NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F064462

Metagenome Family F064462

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F064462
Family Type Metagenome
Number of Sequences 128
Average Sequence Length 49 residues
Representative Sequence MPADLVAIATLVVLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Number of Associated Samples 78
Number of Associated Scaffolds 128

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 83.59 %
% of genes near scaffold ends (potentially truncated) 18.75 %
% of genes from short scaffolds (< 2000 bps) 85.16 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (88.281 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(18.750 % of family members)
Environment Ontology (ENVO) Unclassified
(23.438 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(28.906 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 57.14%    β-sheet: 0.00%    Coil/Unstructured: 42.86%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 128 Family Scaffolds
PF00466Ribosomal_L10 11.72
PF00687Ribosomal_L1 9.38
PF03946Ribosomal_L11_N 4.69
PF00298Ribosomal_L11 1.56
PF05726Pirin_C 0.78
PF04561RNA_pol_Rpb2_2 0.78
PF00682HMGL-like 0.78
PF03447NAD_binding_3 0.78

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 128 Family Scaffolds
COG0244Ribosomal protein L10Translation, ribosomal structure and biogenesis [J] 11.72
COG0081Ribosomal protein L1Translation, ribosomal structure and biogenesis [J] 9.38
COG0080Ribosomal protein L11Translation, ribosomal structure and biogenesis [J] 6.25
COG0085DNA-directed RNA polymerase, beta subunit/140 kD subunitTranscription [K] 0.78
COG1741Redox-sensitive bicupin YhaK, pirin superfamilyGeneral function prediction only [R] 0.78


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A88.28 %
All OrganismsrootAll Organisms11.72 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003203|JGI25406J46586_10041198Not Available1628Open in IMG/M
3300003373|JGI25407J50210_10007481All Organisms → cellular organisms → Bacteria2737Open in IMG/M
3300003373|JGI25407J50210_10145424Not Available584Open in IMG/M
3300005347|Ga0070668_101186599Not Available691Open in IMG/M
3300005844|Ga0068862_101316083Not Available724Open in IMG/M
3300005981|Ga0081538_10063435Not Available2098Open in IMG/M
3300005981|Ga0081538_10068482Not Available1973Open in IMG/M
3300005981|Ga0081538_10134600All Organisms → cellular organisms → Bacteria1154Open in IMG/M
3300005981|Ga0081538_10325391Not Available560Open in IMG/M
3300005983|Ga0081540_1021960All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00593780Open in IMG/M
3300006853|Ga0075420_100869519Not Available776Open in IMG/M
3300007790|Ga0105679_10349941Not Available1715Open in IMG/M
3300009147|Ga0114129_10677167Not Available1328Open in IMG/M
3300009789|Ga0126307_10091389Not Available2407Open in IMG/M
3300009789|Ga0126307_10108652Not Available2202Open in IMG/M
3300009789|Ga0126307_10218670Not Available1529Open in IMG/M
3300009789|Ga0126307_10465019Not Available1021Open in IMG/M
3300009789|Ga0126307_10552608Not Available929Open in IMG/M
3300009789|Ga0126307_11462891Not Available554Open in IMG/M
3300009840|Ga0126313_10041085Not Available3222Open in IMG/M
3300009840|Ga0126313_10160319Not Available1705Open in IMG/M
3300009840|Ga0126313_10220575Not Available1462Open in IMG/M
3300009840|Ga0126313_10427974Not Available1053Open in IMG/M
3300009840|Ga0126313_11624550Not Available539Open in IMG/M
3300010036|Ga0126305_10018655All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3614Open in IMG/M
3300010036|Ga0126305_10623307Not Available726Open in IMG/M
3300010037|Ga0126304_11118705Not Available539Open in IMG/M
3300010038|Ga0126315_10661225Not Available679Open in IMG/M
3300010038|Ga0126315_10906306Not Available586Open in IMG/M
3300010039|Ga0126309_11168528Not Available527Open in IMG/M
3300010040|Ga0126308_10183294Not Available1339Open in IMG/M
3300010042|Ga0126314_11158985Not Available577Open in IMG/M
3300010044|Ga0126310_11498454Not Available553Open in IMG/M
3300010045|Ga0126311_10978031Not Available691Open in IMG/M
3300014487|Ga0182000_10007556Not Available2539Open in IMG/M
3300014487|Ga0182000_10030983Not Available1491Open in IMG/M
3300014487|Ga0182000_10217707Not Available743Open in IMG/M
3300014487|Ga0182000_10273805Not Available690Open in IMG/M
3300014487|Ga0182000_10305636Not Available665Open in IMG/M
3300014488|Ga0182001_10018244All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1611Open in IMG/M
3300017965|Ga0190266_10057461Not Available1411Open in IMG/M
3300017965|Ga0190266_10112904Not Available1144Open in IMG/M
3300017997|Ga0184610_1046620Not Available1270Open in IMG/M
3300017997|Ga0184610_1075264Not Available1038Open in IMG/M
3300018000|Ga0184604_10010645Not Available1936Open in IMG/M
3300018028|Ga0184608_10014827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2731Open in IMG/M
3300018054|Ga0184621_10222334Not Available676Open in IMG/M
3300018056|Ga0184623_10426165Not Available578Open in IMG/M
3300018066|Ga0184617_1022580Not Available1416Open in IMG/M
3300018066|Ga0184617_1024586Not Available1374Open in IMG/M
3300018066|Ga0184617_1217706Not Available570Open in IMG/M
3300018072|Ga0184635_10062655Not Available1445Open in IMG/M
3300018073|Ga0184624_10373164Not Available637Open in IMG/M
3300018073|Ga0184624_10476104Not Available545Open in IMG/M
3300018074|Ga0184640_10418902Not Available600Open in IMG/M
3300018077|Ga0184633_10191784Not Available1057Open in IMG/M
3300018081|Ga0184625_10096255Not Available1525Open in IMG/M
3300018081|Ga0184625_10100733Not Available1492Open in IMG/M
3300018422|Ga0190265_10116969Not Available2538Open in IMG/M
3300018465|Ga0190269_10503444Not Available787Open in IMG/M
3300018465|Ga0190269_11804985Not Available522Open in IMG/M
3300018466|Ga0190268_10302611Not Available961Open in IMG/M
3300018476|Ga0190274_10037062All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3397Open in IMG/M
3300019377|Ga0190264_10149488Not Available1201Open in IMG/M
3300019767|Ga0190267_10657170Not Available664Open in IMG/M
3300019767|Ga0190267_11339037Not Available538Open in IMG/M
3300019869|Ga0193705_1027568Not Available1226Open in IMG/M
3300021510|Ga0222621_1069909Not Available740Open in IMG/M
3300022756|Ga0222622_11126068Not Available577Open in IMG/M
3300025913|Ga0207695_10997044Not Available717Open in IMG/M
3300027718|Ga0209795_10120397Not Available746Open in IMG/M
3300027750|Ga0209461_10011510Not Available1507Open in IMG/M
3300027809|Ga0209574_10016793Not Available1638Open in IMG/M
3300028596|Ga0247821_11229721Not Available510Open in IMG/M
3300028597|Ga0247820_10809840Not Available659Open in IMG/M
3300028717|Ga0307298_10024312Not Available1586Open in IMG/M
3300028744|Ga0307318_10127791Not Available867Open in IMG/M
3300028755|Ga0307316_10034528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria1662Open in IMG/M
3300028782|Ga0307306_10052724Not Available1016Open in IMG/M
3300028796|Ga0307287_10188949Not Available782Open in IMG/M
3300028809|Ga0247824_10265793Not Available956Open in IMG/M
3300028812|Ga0247825_10086154All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria2116Open in IMG/M
3300028878|Ga0307278_10000721All Organisms → cellular organisms → Bacteria16215Open in IMG/M
3300028878|Ga0307278_10008883All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4734Open in IMG/M
3300028881|Ga0307277_10082260Not Available1349Open in IMG/M
3300028881|Ga0307277_10254154Not Available775Open in IMG/M
3300030496|Ga0268240_10013472Not Available1441Open in IMG/M
3300030499|Ga0268259_10160772Not Available539Open in IMG/M
3300030510|Ga0268243_1000912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4593Open in IMG/M
3300030510|Ga0268243_1031914Not Available1087Open in IMG/M
3300030510|Ga0268243_1077610Not Available750Open in IMG/M
3300030516|Ga0268255_10047612Not Available1390Open in IMG/M
3300030516|Ga0268255_10104791Not Available849Open in IMG/M
3300031548|Ga0307408_100018340All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4696Open in IMG/M
3300031548|Ga0307408_100159334Not Available1791Open in IMG/M
3300031548|Ga0307408_100335772Not Available1278Open in IMG/M
3300031548|Ga0307408_100494505Not Available1069Open in IMG/M
3300031548|Ga0307408_100522739Not Available1042Open in IMG/M
3300031548|Ga0307408_100821596Not Available845Open in IMG/M
3300031731|Ga0307405_10077992Not Available2154Open in IMG/M
3300031852|Ga0307410_10857190Not Available776Open in IMG/M
3300031852|Ga0307410_11972620Not Available520Open in IMG/M
3300031901|Ga0307406_10037946All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2980Open in IMG/M
3300031901|Ga0307406_10048697Not Available2678Open in IMG/M
3300031901|Ga0307406_11825332Not Available541Open in IMG/M
3300031903|Ga0307407_10569701Not Available839Open in IMG/M
3300031911|Ga0307412_10289276Not Available1290Open in IMG/M
3300031911|Ga0307412_11233499Not Available671Open in IMG/M
3300031995|Ga0307409_101262143Not Available763Open in IMG/M
3300031995|Ga0307409_101625359Not Available674Open in IMG/M
3300032002|Ga0307416_103830745Not Available504Open in IMG/M
3300032075|Ga0310890_11398486Not Available574Open in IMG/M
3300032080|Ga0326721_10082409Not Available1492Open in IMG/M
3300032080|Ga0326721_10099735Not Available1386Open in IMG/M
3300032080|Ga0326721_10137174Not Available1224Open in IMG/M
3300032080|Ga0326721_10282598Not Available917Open in IMG/M
3300032126|Ga0307415_100406252Not Available1164Open in IMG/M
3300032126|Ga0307415_101946194Not Available571Open in IMG/M
3300032205|Ga0307472_100993083Not Available786Open in IMG/M
3300033551|Ga0247830_10228495All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1400Open in IMG/M
3300034131|Ga0334911_054627Not Available579Open in IMG/M
3300034172|Ga0334913_014667Not Available1805Open in IMG/M
3300034172|Ga0334913_128395Not Available539Open in IMG/M
3300034174|Ga0334932_071360Not Available600Open in IMG/M
3300034174|Ga0334932_092296Not Available530Open in IMG/M
3300034377|Ga0334931_070259Not Available798Open in IMG/M
3300034377|Ga0334931_143628Not Available572Open in IMG/M
3300034377|Ga0334931_152974Not Available555Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil18.75%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil16.41%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere15.62%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment12.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.81%
Sub-Biocrust SoilEnvironmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil6.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.69%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere4.69%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave3.12%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.56%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.56%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.56%
AgaveHost-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave1.56%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.78%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil0.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.78%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.78%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003203Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300003373Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300007790Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projectsEnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010037Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300014487Bulk soil microbial communities from Mexico - Magueyal (Ma) metaGEnvironmentalOpen in IMG/M
3300014488Bulk soil microbial communities from Mexico - San Felipe (SF) metaGEnvironmentalOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018066Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300019767Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 TEnvironmentalOpen in IMG/M
3300019869Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2EnvironmentalOpen in IMG/M
3300021510Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coexEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027718Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300027750Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300027809Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300028596Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14EnvironmentalOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300028717Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158EnvironmentalOpen in IMG/M
3300028744Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300030496Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)EnvironmentalOpen in IMG/M
3300030499Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)Host-AssociatedOpen in IMG/M
3300030510Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)EnvironmentalOpen in IMG/M
3300030516Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)Host-AssociatedOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032080Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034131Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMSEnvironmentalOpen in IMG/M
3300034172Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMSEnvironmentalOpen in IMG/M
3300034174Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNSEnvironmentalOpen in IMG/M
3300034377Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNSEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25406J46586_1004119823300003203Tabebuia Heterophylla RhizosphereMSADPVVLAILLVVAALAAPLTADWRRRQATRRFDAVYERNLLRRTGRG*
JGI25407J50210_1000748143300003373Tabebuia Heterophylla RhizosphereLPAELVAVATLLVVAALVAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
JGI25407J50210_1014542423300003373Tabebuia Heterophylla RhizosphereMPADLVAIATLVVLATLAAPFTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0070668_10118659913300005347Switchgrass RhizosphereMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0068862_10131608313300005844Switchgrass RhizosphereNAGGTMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0081538_1006343533300005981Tabebuia Heterophylla RhizosphereMPADLVAIAILALAALTAPLAADWRRRLATRRFDAIYERNLLRRTGRG*
Ga0081538_1006848233300005981Tabebuia Heterophylla RhizosphereMPADLVVIAILVMLAALAAPLAADWRRRLANRRFDAVYERNLLRRTGRG*
Ga0081538_1013460023300005981Tabebuia Heterophylla RhizosphereMPTDLVAIAILGLAALAAPLTADWRRRLATRRFDALYERNLLRRTGRG*
Ga0081538_1032539123300005981Tabebuia Heterophylla RhizosphereMPAELVAVATLLVLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0081540_102196013300005983Tabebuia Heterophylla RhizospherePPPSIRSIDPTGGTLSANPVVLAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0075420_10086951923300006853Populus RhizosphereMPADLVAIAALAALADLAPLAADWRRRQATRRFDALYERNLLRRTGRG*
Ga0105679_1034994123300007790SoilMPADLVAIAALLVLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0114129_1067716723300009147Populus RhizosphereMPADLVAIAALAALAALAPLAADWRRRQATRRFDALYERNLLRRTGRG*
Ga0126307_1009138913300009789Serpentine SoilMPADLVVIATLVVLATLAAPLTADWRRRLATRRFDALYERNLLRRTGRG*
Ga0126307_1010865233300009789Serpentine SoilMPADLVAIATLVVLAALAAPFTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0126307_1021867023300009789Serpentine SoilMSADPVLIAILVMLAILAAPLTADWRRRLASRRFDAVYERNLLRRTGRG*
Ga0126307_1046501923300009789Serpentine SoilMSADPVVLAILVVLATLAAPLTADWRRHLATRRFDAVYQRNLLRRTGRG*
Ga0126307_1055260813300009789Serpentine SoilMPADLIAIATLVALATLAAPLTADWRRRLATRRFDAVYERNRLRRTGPS*
Ga0126307_1146289123300009789Serpentine SoilMPADPVLIAILAVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0126313_1004108543300009840Serpentine SoilMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNRLRRTGRS*
Ga0126313_1016031923300009840Serpentine SoilMSADPVLIAILVMLAILAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0126313_1022057523300009840Serpentine SoilMSADPVVLAILVVLATLAAPLTADWRRRLATRRFDAVYQRNLLRRTGRG*
Ga0126313_1042797423300009840Serpentine SoilLVAVAILVVLATLAAPLAADCRRRLATRRFDAVYERNLLRRTAAVSVRPRRGRGR*
Ga0126313_1162455013300009840Serpentine SoilMSADPVLIAILVMLAILAAPLAADWRRRLATRRFDAVYERNLLRRTDPR*
Ga0126305_1001865553300010036Serpentine SoilMPADLIAIATLVALATLAAPLTADWRRRLATRRFDAVYERNRLRRTGRS*
Ga0126305_1062330723300010036Serpentine SoilMPADLVAIATLVALAALAAPFTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0126304_1111870523300010037Serpentine SoilMSADPVLIAILVMLAILAAPLTAGWRRRLATRRFDAVYERNLLRRTGRG*
Ga0126315_1066122523300010038Serpentine SoilMSADPVVLAILVVLATLAAPLTADWRRRLATRRFDALYERNLLRRTGRG*
Ga0126315_1090630623300010038Serpentine SoilMPADLVAIAILVVLATFAAPLAADCRRRLASHRFDAVYERNLLRRTGRG*
Ga0126309_1116852813300010039Serpentine SoilMPADLVAIATLVLAALAAPLAAHWRRRLATRRFDAVYERNLLGRTGRG*
Ga0126308_1018329423300010040Serpentine SoilMPADLVAIAILVVLATFAAPLAADCRRRLASRRFDAVYERNLLRRTGRG*
Ga0126314_1115898523300010042Serpentine SoilLPDELVAIATVLGLAALAAPLTATADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0126310_1149845423300010044Serpentine SoilMSADPVVLAILVVLATLAAPLTADWRRRLATRRFDAVYDRNLLRRTGRG*
Ga0126311_1097803123300010045Serpentine SoilMSADPVVLAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0182000_1000755643300014487SoilMSADPVLIAILVVLAILAAPVAADWRRRLASRRFDAVYERNLLRRTGRG*
Ga0182000_1003098323300014487SoilMSADPVVIAILVVLATLAAPLAADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0182000_1021770723300014487SoilMSANPVLIAIVVVVATLAAPLTADWRRRLATRRFDAVYERNLLRRTSPG*
Ga0182000_1027380523300014487SoilMPTDLVAIAILVVLATLAAPLAADCRRRLATRRFDAVYERNLLRRTGRG*
Ga0182000_1030563613300014487SoilMPADLVAIAVLAVLAALTPLAADWRRRLASRRFDAVYERNLLRRTGRG*
Ga0182001_1001824423300014488SoilMPADLVAIATLVVLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG*
Ga0190266_1005746133300017965SoilMPADLAAIAILVLAALTAPLAADWRRRLATRRFDASYERNLLRRTGRG
Ga0190266_1011290423300017965SoilMPADLVAIVTLVVLAALAAPFTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0184610_104662023300017997Groundwater SedimentMPPDPFVVATLVVLAVIATPLTADVRRRRVARRFDAVYERNLLRRTGRG
Ga0184610_107526413300017997Groundwater SedimentMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRS
Ga0184604_1001064533300018000Groundwater SedimentMPADPVAIAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0184608_1001482713300018028Groundwater SedimentMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0184621_1022233413300018054Groundwater SedimentMPADLAAIVTLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRS
Ga0184623_1042616523300018056Groundwater SedimentMPPDPFVVVTLVVLAAIATPLTADVRRRRVARRFDAVYERNLLRRTGRG
Ga0184617_102258033300018066Groundwater SedimentMPADLVAIATLVALATLAAPLTADWRRRLASRRFDAVYERNLLRRTGRS
Ga0184617_102458643300018066Groundwater SedimentMPADPVAIAILVVLATLAAPLTADWRRRLASRRFDAVYERNLLRRTGRS
Ga0184617_121770623300018066Groundwater SedimentGTMPADPVAIAILVVLATLAAPLTADSRRRLATRCFDAVYERNLLRRTGRG
Ga0184635_1006265533300018072Groundwater SedimentMPADLVAIAALVLAALAPLAAAWRRRQATRRFDALYERNLLRRTGRG
Ga0184624_1037316413300018073Groundwater SedimentMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRR
Ga0184624_1047610423300018073Groundwater SedimentMPADLVAIAALAALAALAPLAADWRRRQATRRFDALYERNLLRRTGRG
Ga0184640_1041890213300018074Groundwater SedimentGGTMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRS
Ga0184633_1019178423300018077Groundwater SedimentMPADLVAIAALAALAALAPLAADWRRRQATRRFDELYERNLLRRTGRG
Ga0184625_1009625513300018081Groundwater SedimentMPADLVAIVTLVALASLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0184625_1010073323300018081Groundwater SedimentMPADLVAIAALAAMAALAPLAADWRRRQATRRFDALYERNLLRRTGRG
Ga0190265_1011696923300018422SoilMPADLVVIATLVVLATLAAPLTADWRRRLATRRFDALYERNLLRRTGRG
Ga0190269_1050344423300018465SoilMSADPVLIAILVMLAILAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0190269_1180498523300018465SoilMPADLVAVAILVMLALAAPLAADCRRRLATRRFDAVYERNLLRRTAAVSARPRRGRGR
Ga0190268_1030261123300018466SoilLPDELVAIATLLGLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0190274_1003706223300018476SoilLPDELVAVATVLGLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0190264_1014948813300019377SoilMPADLVAIAALAAVAALAPLAADWRRRQATRRFDALYERNLLRRTGRG
Ga0190267_1065717023300019767SoilMPADLVAIAALAALAALAPLTADWRRRQATRRFDALYERNLLRRTGRG
Ga0190267_1133903723300019767SoilMSADPAVLAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0193705_102756833300019869SoilMPADPVLIAILVVLATLAAPLGADWRRRLSTRRFDAVYERNRLRRTGRG
Ga0222621_106990923300021510Groundwater SedimentMPADLVAIVTLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRS
Ga0222622_1112606813300022756Groundwater SedimentGGTMPADLVAIVTLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRS
Ga0207695_1099704413300025913Corn RhizosphereSANAGGTMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0209795_1012039723300027718AgavePPVEGTMPADLAAIAILVLAALTAPLAADGRRRLATRRFDAIYERNLLRRTGRS
Ga0209461_1001151013300027750AgavePADLVAFAVLAVLAALTPLAADWRRRLASRRFDAVYERNLLRRTGRG
Ga0209574_1001679323300027809AgaveMPADLVAFAVLAVLAALTPLAADWRRRLASRRFDAVYERNLLRRTGRG
Ga0247821_1122972113300028596SoilMPADLVAIAALAALADLAPLAADWRRRQATRRFDALYERNLLRRTGRG
Ga0247820_1080984013300028597SoilPGGTMPADLVAIAALAALAALAPLAADWRRRQATRRFDALYERNLLRRTGRG
Ga0307298_1002431223300028717SoilMPADLVAIVTLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307318_1012779113300028744SoilMPADLVAIATLVVLAALAAPFTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307316_1003452813300028755SoilMPADLVAIVTLVALATLAATLTADWRRRLATRRFDAVYERNLLRRTGRS
Ga0307306_1005272423300028782SoilMPADPVAIAILVVLATLAAPLTADWRRRLATRRFDAVYERNILRRTGRG
Ga0307287_1018894923300028796SoilMPADLVAIVTLVALASLAAPLTADWRRRLATRRFDAVYERNLLRRTGRS
Ga0247824_1026579323300028809SoilLVAIAALVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0247825_1008615443300028812SoilMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGR
Ga0307278_1000072153300028878SoilMLADPVVIAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307278_1000888383300028878SoilMPADPVAIAILVVLASLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307277_1008226013300028881SoilATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307277_1025415423300028881SoilMSADPVVLAVLVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0268240_1001347223300030496SoilMSADPVVIAIGVVVAATITAPLTADWRRRLATRRFDAVYERNLLRRTGRAWP
Ga0268259_1016077223300030499AgaveMSADPVVIAILVVLATLAAPLAADWRRRLATRRFDAVYERNLLRRTGRG
Ga0268243_100091283300030510SoilPTPSIRILDPTGGSMSADPVLIAILVVLAILAAPVAADWRRRLASRRFDAVYERNLLRRTGRG
Ga0268243_103191423300030510SoilMPTDLVAIAILVVLATLAAPLAVDCRRRLATRRFDAVYERNLLRRTGRG
Ga0268243_107761023300030510SoilMSANPVLIAIVVVVATLAAPLTADWRRRLATRRFDAVYERNLLRRTSPG
Ga0268255_1004761233300030516AgaveMPADLAAIAILVLAALTAPLAADGRRRLATRRFDASYERNLLRRTGRG
Ga0268255_1010479123300030516AgaveMPADLVAIAILVLAALTAPLAADWRRRLATRRFDAIYERNLLRRTGRS
Ga0307408_10001834053300031548RhizosphereMPADLVAIATLVLAALAAHWRRRLATRRFDAVYERNLLGRTGRG
Ga0307408_10015933433300031548RhizosphereMPADLVAVAILVVLATLAAPLAADCRRRLATRRFDAVYERNLLRRTAAVSVRPRRGRGR
Ga0307408_10033577223300031548RhizosphereLPDELVAIATVLGLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307408_10049450513300031548RhizosphereMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLL
Ga0307408_10052273923300031548RhizosphereRGIPPPPSIRSIEPTGETMSADPVVLAILVVLATLAAPLTADWCRRLATRRFDAIYERNLLRRTGRG
Ga0307408_10082159623300031548RhizosphereMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNRLRRTGRS
Ga0307405_1007799233300031731RhizosphereMSADPVVLAILVVLATLAAPLTADWCRRLATRRFDAIYERNLLRRTGRG
Ga0307410_1085719023300031852RhizosphereMSADPVVLAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307410_1197262013300031852RhizosphereTGETMSADPVVLAILVVLATLAAPLTADWCRRLATRRFDAIYERNLLRRTGRG
Ga0307406_1003794613300031901RhizosphereSIRSIEPTGETMSADPVVLAILVVLATLAAPLTADWCRRLATRRFDAIYERNLLRRTGRG
Ga0307406_1004869743300031901RhizosphereMPADLVAIATLVLAALAAPLAAHWRRRLATRRFDAVYERNLLRRTGRG
Ga0307406_1182533223300031901RhizosphereMPANLVAIATVLALATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307407_1056970113300031903RhizospherePSIRSVDPTGGTMSADPVLIAILVMLAILAAPLTADWRRRLATRRFDAVYERNLLRRTGR
Ga0307412_1028927623300031911RhizosphereMPADLVAIATLVVAALAAHWRRRLATRRFDAVYERNLLGRTGRG
Ga0307412_1123349923300031911RhizosphereMSPAPVVLAILVVLATLAAPLAADCRRRLATRRFDAVYERNLLRRTAAVSVRPRRGRGR
Ga0307409_10126214323300031995RhizosphereMPADLVALAILVVLATLAAPLAADCRRRLATRRFDAVYERNLLRRTGRG
Ga0307409_10162535923300031995RhizosphereMSADSVLIAILVMLAILAAPRTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307416_10383074523300032002RhizosphereMSADSVLIAILVMLAMLAAPRTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0310890_1139848613300032075SoilMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLRRT
Ga0326721_1008240933300032080SoilMSADPVLIAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTATPRSRPGPGR
Ga0326721_1009973523300032080SoilMPADLVAIATLVVLATLAPLLTADWRRRLATRRFDALYERNLLRRTGRG
Ga0326721_1013717423300032080SoilMSADPVVLAILVVLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0326721_1028259833300032080SoilMPADLVAIATLVVLATLAAPLAADWRRRLATRRFDALYERNLLRRTGRS
Ga0307415_10040625223300032126RhizosphereMPADLVAIAILVVLATFAAPLAADCRRRLASHRFDAVYERNLLRRTGRG
Ga0307415_10194619423300032126RhizosphereMPADLVAIATLVLAALAAPLAAHWRRRLATRRFDAVYERNLLRRTGPR
Ga0307472_10099308313300032205Hardwood Forest SoilMPADLVAIATLVALATLAAPLTADWRRRLATRRFDAVYERNLLR
Ga0247830_1022849523300033551SoilMPADLVAIAALAALAALAPLAADWRRRQATRRFDALYERNLLCRTGRG
Ga0334911_054627_166_3123300034131Sub-Biocrust SoilMPADLVAIAVLVLAALTAPLAADWRRRLASRRFDAVYERNLLRRTGRG
Ga0334913_014667_343_5013300034172Sub-Biocrust SoilVEEAMPADLVAIAILVLAALTAPLAADFRRRLATRRFDAIYERNLLRRTGRG
Ga0334913_128395_50_1993300034172Sub-Biocrust SoilMSADPVVIAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0334932_071360_325_4713300034174Sub-Biocrust SoilMPADLVAIAILGLAALAAPLAADWRRRLATRRFDAIYERNLLRRTGRG
Ga0334932_092296_318_4673300034174Sub-Biocrust SoilMSASPVLIAILVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0334931_070259_556_7053300034377Sub-Biocrust SoilMPADLVAIATLVVLAALAAPLAADWRRRLATRRFDAVYERNLLRRTGRG
Ga0334931_143628_83_2323300034377Sub-Biocrust SoilMSAGPVLIAILVVLATLAAPLTADWRRRLSTRRFDAVYERNLLRRTGRG
Ga0334931_152974_415_5553300034377Sub-Biocrust SoilVEEAMPADLVAIAILVLAALTAPLAADFRRRLATRRFDAIYERNLLR


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