Metagenome / Metatranscriptome Family F064390

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064390
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	70 residues
Representative Sequence	MVTEIASLDIASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Number of Associated Samples	75
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	87.50 %
% of genes from short scaffolds (< 2000 bps)	93.75 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (87.500 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (96.094 % of family members)
Environment Ontology (ENVO)	Unclassified (96.094 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (99.219 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1Ga0075462_100697283 2Ga0075480_104192922 3Ga0129343_10210251 4Ga0182045_14044192 5Ga0182051_12096181 6Ga0182094_12739341 7Ga0182057_10025583 8Ga0182042_13155921 9Ga0182074_11247331 10Ga0182074_11273522 11Ga0182074_15200131 12Ga0182074_15478842 13Ga0182076_10992161 14Ga0182079_12936881 15Ga0182079_14557172 16Ga0182079_16155311 17Ga0182079_17162491 18Ga0182055_11647602 19Ga0182055_14206941 20Ga0182055_14244223 21Ga0182078_103662742 22Ga0182078_106309282 23Ga0182053_14878582 24Ga0182062_12294881 25Ga0182062_12549031 26Ga0182062_12678231 27Ga0182062_13125341 28Ga0182062_13744802 29Ga0182072_15181442 30Ga0182070_10048402 31Ga0182070_11441073 32Ga0182084_11719141 33Ga0182084_14942531 34Ga0182084_15664512 35Ga0182091_15511973 36Ga0182082_11810182 37Ga0182082_12434582 38Ga0182082_14596451 39Ga0182063_12559601 40Ga0182063_13203011 41Ga0182080_11922132 42Ga0182080_15677812 43Ga0181565_110008282 44Ga0181552_104126642 45Ga0181584_104313201 46Ga0181584_107014872 47Ga0181584_107925411 48Ga0181583_103661903 49Ga0181580_106265542 50Ga0181571_108832922 51Ga0181582_104587492 52Ga0181590_110561362 53Ga0181587_103542301 54Ga0181585_107314172 55Ga0181579_106813281 56Ga0181572_108285732 57Ga0181558_101168481 58Ga0181567_106337862 59Ga0181567_108054682 60Ga0181567_109339321 61Ga0181592_100982644 62Ga0181592_105097201 63Ga0181566_108435181 64Ga0181568_106427543 65Ga0181568_111615282 66Ga0182066_13649091 67Ga0182066_15606092 68Ga0182066_16073782 69Ga0182066_16329211 70Ga0182061_11796102 71Ga0182061_15744992 72Ga0182061_16820321 73Ga0182059_12988091 74Ga0182059_14553571 75Ga0182067_10352301 76Ga0182067_16184811 77Ga0182067_16298562 78Ga0182081_13243451 79Ga0182081_15703791 80Ga0182081_16245451 81Ga0182068_13893072 82Ga0182077_11954741 83Ga0182077_12897152 84Ga0182077_16306191 85Ga0182075_11193931 86Ga0182075_14472932 87Ga0182075_16074531 88Ga0182058_12219803 89Ga0182058_14417501 90Ga0182058_15383763 91Ga0182058_16535582 92Ga0182058_17211902 93Ga0194024_11123182 94Ga0181555_11092613 95Ga0181595_103083251 96Ga0181603_102662121 97Ga0181599_10414124 98Ga0181578_101859623 99Ga0181578_104941471 100Ga0181570_105076191 101Ga0255775_12605752 102Ga0255758_102287522 103Ga0255780_102668821 104Ga0255770_100666321 105Ga0255770_101173793 106Ga0255754_105167392 107Ga0255764_100626172 108Ga0255774_104769121 109Ga0255784_101379373 110Ga0255784_103186512 111Ga0255784_104053042 112Ga0255743_103759652 113Ga0255760_101237091 114Ga0255760_103076451 115Ga0255751_101174743 116Ga0255751_105194792 117Ga0255757_101614141 118Ga0255762_105675862 119Ga0255761_102075973 120Ga0255761_105871881 121Ga0255766_103869832 122Ga0255766_105148452 123Ga0255759_101376723 124Ga0255759_105002151 125Ga0255768_102230803 126Ga0255763_12113191 127Ga0208004_10859422 128Ga0233450_100257084
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1Ga0075462_100697283 2Ga0075480_104192922 3Ga0182042_13155921 4Ga0182079_16155311 5Ga0182055_14206941 6Ga0182062_12294881 7Ga0182063_12559601 8Ga0181567_109339321 9Ga0182059_12988091 10Ga0182075_16074531
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1Ga0075462_100697283 2Ga0075480_104192922 3Ga0182042_13155921 4Ga0182079_16155311 5Ga0182055_14206941 6Ga0182062_12294881 7Ga0182063_12559601 8Ga0181567_109339321 9Ga0182059_12988091 10Ga0182075_16074531
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.90% β-sheet: 0.00% Coil/Unstructured: 83.10%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF00719	Pyrophosphatase	90.62
PF01612	DNA_pol_A_exo1	4.69
PF01467	CTP_transf_like	2.34
PF00570	HRDC	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	90.62

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	12.50 %
Unclassified	root	N/A	87.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	12.50 %
Unclassified	root	N/A	87.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	12.50 %
Unclassified	root	N/A	87.50 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.94 %
Unclassified	root	N/A	87.50 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10.16 %
Unclassified	root	N/A	87.50 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	8.59 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.78 %
Unclassified	root	N/A	87.50 %

Name	Rank	Taxonomy	Distribution
Candidatus Thioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	8.59 %
Unclassified	root	N/A	87.50 %
unclassified Oceanospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → unclassified Oceanospirillales	0.78 %

Name	Rank	Taxonomy	Distribution
Candidatus Thioglobus autotrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → Candidatus Thioglobus autotrophicus	4.69 %
Oceanospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → unclassified Oceanospirillales → Oceanospirillales bacterium	0.78 %
Unclassified	root	N/A	87.50 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006027\|Ga0075462_10069728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → unclassified Oceanospirillales → Oceanospirillales bacterium	1107	Open in IMG/M
3300008012\|Ga0075480_10419292	Not Available	656	Open in IMG/M
3300012967\|Ga0129343_1021025	Not Available	1015	Open in IMG/M
3300016726\|Ga0182045_1404419	Not Available	772	Open in IMG/M
3300016727\|Ga0182051_1209618	Not Available	842	Open in IMG/M
3300016731\|Ga0182094_1273934	Not Available	637	Open in IMG/M
3300016732\|Ga0182057_1002558	Not Available	828	Open in IMG/M
3300016733\|Ga0182042_1315592	Not Available	502	Open in IMG/M
3300016735\|Ga0182074_1124733	Not Available	846	Open in IMG/M
3300016735\|Ga0182074_1127352	Not Available	597	Open in IMG/M

Showing 1 to 10 of 125 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.78%
Marine	Environmental → Aquatic → Marine	99.22%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	3.12%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	96.09%
River	Environmental → Aquatic → Freshwater → River	0.78%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	96.09%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.12%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.12%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.78%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	96.09%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300012967	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016726	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011504BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016727	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011510BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016731	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016732	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101403AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016733	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011501AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016735	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071406BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016739	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071408BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0075462_100697283	3300006027	Aqueous	SDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELI*
Ga0075480_104192922	3300008012	Aqueous	ASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFKPLNNPELIRNEF*
Ga0129343_10210251	3300012967	Aqueous	TMVTEIASLDIASNASDPLHEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF*
Ga0182045_14044192	3300016726	Salt Marsh	LDIASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIVLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0182051_12096181	3300016727	Salt Marsh	TIVNEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0182094_12739341	3300016731	Salt Marsh	ASDPLPEKRSRTFDPGIPNCNQLNKVSLTIVLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0182057_10025583	3300016732	Salt Marsh	SLDIDSKASDPLPEKRSNTFEPLIENCNQLNRVSLTIDFVDRSPSIVGNLNFDPLSNPELIRNEF
Ga0182042_13155921	3300016733	Salt Marsh	LEFFFKESKTVLSFSTMVTEIASLDIASNASDPLPEKRSKTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0182074_11247331	3300016735	Salt Marsh	DIASLDIDSKASDPLPEKRSNTFESLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0182074_11273522	3300016735	Salt Marsh	KTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF
Ga0182074_15200131	3300016735	Salt Marsh	KKLEFFFKESKTFLSFSTMVTDIAPLDIASNASDPLPEKRSRTFDPEIENCIQLNRVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0182074_15478842	3300016735	Salt Marsh	VFTLLEFFFKESKTVLSFSTIVTDIASLDIASNASDPLPEKRSKTFEPGIENRNQLKRVSLTIDLVGLSPSLEGNLNFNPLNNPELILNEF
Ga0182076_10992161	3300016739	Salt Marsh	TDIASLDNASNASDPLPEKRSRTFDPGIANCNQLNRVSLTIDLVGLNPSLEGNLNFNPLYNPELIRNEF
Ga0182079_12936881	3300016741	Salt Marsh	SFSTIVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPFNNPELIRNEF
Ga0182079_14557172	3300016741	Salt Marsh	LDTASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEF
Ga0182079_16155311	3300016741	Salt Marsh	KRSKTFEPGIENCNQLKRVSLINDLVGLNPSLEGNVNFNPLSNPALIRNEF
Ga0182079_17162491	3300016741	Salt Marsh	ASDPLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSIEGNLNFNPLNNPELIRNEF
Ga0182055_11647602	3300016746	Salt Marsh	EKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEF
Ga0182055_14206941	3300016746	Salt Marsh	SDPLPEKRSKTFEPVIENCNQLKRVSLTNDFVGLSSSLEGNLNFDPLNNPELIRNEL
Ga0182055_14244223	3300016746	Salt Marsh	PLPEKRSNTFEPLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNHELIRNEF
Ga0182078_103662742	3300016747	Salt Marsh	EIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEF
Ga0182078_106309282	3300016747	Salt Marsh	VTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELI
Ga0182053_14878582	3300016749	Salt Marsh	ASLDIASNANDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0182062_12294881	3300016751	Salt Marsh	AVLFFSTMVTVIASLEIASNASDPLPENRSKTLEPLIENCNQLNRVSFTDDLVGLSPSIEGNLNFSPLNKPELIRNEF
Ga0182062_12549031	3300016751	Salt Marsh	AVFKLLKFFFKESKTVLSFSTMVTDIASLDIASNASDPLPEKRSKTFEPGVENCNQLKRVSLTIDFVGLSPSLEGNLNFDPLNNPELIRNEL
Ga0182062_12678231	3300016751	Salt Marsh	LLEFFFKESKTVLSFSTMVTDNASLDIASKASDPLPEKRSKTFEPEIENCNQLKRVSLTIDLVGLSPSLEGNLNFNPLNNPEFI
Ga0182062_13125341	3300016751	Salt Marsh	MVTDIASLDIASNASDPLPEKRSKTFEPVIENCNQLKRVSLTNDFVGLSSSLEGNLNFDPLNNPELIRNEL
Ga0182062_13744802	3300016751	Salt Marsh	MVTDIAFLDIASNASDPLPEKRSRTFEPEIENCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNDPELIRNEF
Ga0182072_15181442	3300016754	Salt Marsh	KTFLSFSTMVTDIASLDNASNASDPLPEKRSRTFDPGIANCNQLNRVSLTIDLVGLNPSLEGNLNFNPLYNPELIRNEF
Ga0182070_10048402	3300016758	Salt Marsh	EKRSRTFDPEIENCIQLNRVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0182070_11441073	3300016758	Salt Marsh	PLPEKRSNTFEPLIENCNQLNRVSLTIDFVGLSPSIVGNLNFDPLSNPELIRNEF
Ga0182084_11719141	3300016762	Salt Marsh	AALFFSTRVTDIASLDIDSKASDPLPEKRSNTFESLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0182084_14942531	3300016762	Salt Marsh	ASLDIASNASDPLPEKRSKTFEPGIENRNQLKRVSLTIDLVGLSPSLEGNLNFNPLNNPELILNEF
Ga0182084_15664512	3300016762	Salt Marsh	VLSFSTMVTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLNNPELIRNEF
Ga0182091_15511973	3300016766	Salt Marsh	EIASLDIASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIVLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0182082_11810182	3300016771	Salt Marsh	ASDPLPEKRSRTFEPEIENCNQLKRVSLTIDLVGLSPSLEGNWNFNPLNNPELILNEF
Ga0182082_12434582	3300016771	Salt Marsh	PEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEL
Ga0182082_14596451	3300016771	Salt Marsh	VFKLLEFFFKESKTVLSFSTIVTDIASLDIASNASDPLPEKRSKTFEPGIENRNQLKRVSLTIDLVGLSPSLEGNLNFNPLNNPELILNEF
Ga0182063_12559601	3300016781	Salt Marsh	VFSTRVTDVASLDIDSKASDPLPEKRSNTFEPLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0182063_13203011	3300016781	Salt Marsh	DVVVFKLLEFFFKESKATLSFSTMVTDIASLDIASNASDPLPEKRSKTFEPVIENCNQLKRVSLTNDFVGLSSSLEGNLNFDPLNNPELIRNEL
Ga0182080_11922132	3300016787	Salt Marsh	VLSFSTIVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPFNNPELIRNEF
Ga0182080_15677812	3300016787	Salt Marsh	FFKKSKAVLFFSTIVTDIASLEIASNASDPLPENRSKTFEPWIENCNQLNRVSFTADLVGLSPSIEGNLNFNPLYNPELTRNEF
Ga0181565_110008282	3300017818	Salt Marsh	LEFFFKESKTVLSFSTIVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPFNNPELIRNEF
Ga0181552_104126642	3300017824	Salt Marsh	FFKESNTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLNPSLEGNLNFNPLYSPELIRNEF
Ga0181584_104313201	3300017949	Salt Marsh	KLEFFFKESKTILSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLIIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0181584_107014872	3300017949	Salt Marsh	DPLPEKRSKTFEPVIENCNQLKRVSLTNDFVGLSSSLEGNLNFDPLNNPELIRNEL
Ga0181584_107925411	3300017949	Salt Marsh	LEFFFKESKTVLSFSTIVTEIASLDIASNASDPLPEKRSRTFDPVISNCNQLNKVSLTIDLVGLSPSLEGNLNFKPLNNPELIRNEF
Ga0181583_103661903	3300017952	Salt Marsh	VLVFKLLEFFFKESKTVLSFSTIVTDIASLDIASNAREPLPAKRSKTLEPLIENCNQLNRVSFTDDLVGLSPSIEGNLNFSPLNKPELIRNEF
Ga0181580_106265542	3300017956	Salt Marsh	PLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYKPELIRNEF
Ga0181571_108832922	3300017957	Salt Marsh	SDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEL
Ga0181582_104587492	3300017958	Salt Marsh	MVTDIAPLDIASNASDPLPEKRSRTFDPEIENCIQLNRVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0181590_110561362	3300017967	Salt Marsh	DIASNASDPLPEKRSKTFEPGIENCNQLKRVSLTIDLVGLSPSLDGNLNFNPLNNPELILNEF
Ga0181587_103542301	3300017968	Salt Marsh	NASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEF
Ga0181585_107314172	3300017969	Salt Marsh	DIASNASDPLPEKRSKTFEPGIENCNQLKRVSLINDLVGLNPSLEGNVNFNPLSNPALIRNEF
Ga0181579_106813281	3300018039	Salt Marsh	KLEFFFKESKTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF
Ga0181572_108285732	3300018049	Salt Marsh	SDPLPEKRSKTFEPGIENCNQLNRVSLTIDLVGLSPSLEGNLNFKPLNNPELIRNEF
Ga0181558_101168481	3300018417	Salt Marsh	TVLSFSTMVTEIASLDIASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0181567_106337862	3300018418	Salt Marsh	LVFKLLELFFNESKTILSFSTMVTDIAFLDIASNASDPLPEKRSRTFEPEIENCNQLNKVSLIIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0181567_108054682	3300018418	Salt Marsh	FFFKESKTVLSFSTMVTEIASLDIASNASDPLPEKRSKTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0181567_109339321	3300018418	Salt Marsh	VLSFSTIVTETASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEFWIKLVFGNSHKRLKVLV
Ga0181592_100982644	3300018421	Salt Marsh	MVTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLAGNLNVNPLYNPELIRNEF
Ga0181592_105097201	3300018421	Salt Marsh	KAVLFFSTIVTDIASLEIASNASDPLPENRSKTLEPWIENCNQLNRVSFTADFVGLSPSIEGNLNLNPLNNPEFILNEF
Ga0181566_108435181	3300018426	Salt Marsh	EIASLDIASNASDPLPEKRSRTFDPVISNCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYKPELIRNEF
Ga0181568_106427543	3300018428	Salt Marsh	FSTMVTDIAPLDIASNASDPLPEKRSRTFDPEIENCIQLNRVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0181568_111615282	3300018428	Salt Marsh	VTDIASLEIASNASDPLPENRSKTLEPWIENCNQLNRVSFTADFVGLSPSIEGNLNLNLLNNPEFILNEF
Ga0182066_13649091	3300019262	Salt Marsh	TMVTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEL
Ga0182066_15606092	3300019262	Salt Marsh	LDIASNASDPLPEKRSKTFEPGIENCNQLKRVSLTIDLVGLSPSLEGNLNFNPLNNPELILNEF
Ga0182066_16073782	3300019262	Salt Marsh	SKATLSFSTMVTDIASLDIASNASDPLPEKRSKTFEPVIENCNQLKRVSLTNDFVGLSSSLEGNLNFDPLNNPELIRNEL
Ga0182066_16329211	3300019262	Salt Marsh	SNASDPLPENKSKTLEPLIENCNQLNRVSFTDDLVGLSPSIEGNLNFSPLNKPELIRNEF
Ga0182061_11796102	3300019266	Salt Marsh	PEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEF
Ga0182061_15744992	3300019266	Salt Marsh	SLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLIIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0182061_16820321	3300019266	Salt Marsh	SNASDPLPEKRSKTFEPGIENCNQLKRVSLTNDFVGLSSSLEGNLNFDPLNNPELIRNEL
Ga0182059_12988091	3300019272	Salt Marsh	SKTLEPLIENCNQLNRVSFTDDLVGLSPSIEGNLNFSPLNKPELIRNEF
Ga0182059_14553571	3300019272	Salt Marsh	PEKRSKTFEPVIENCNQLKRVSLTNDFVGLSSSLEGNLNFDPLNNPELIRNEL
Ga0182067_10352301	3300019276	Salt Marsh	NASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEL
Ga0182067_16184811	3300019276	Salt Marsh	AALFFSTRVTDIASLDIDSKASDPLPEKRSNTFEPLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0182067_16298562	3300019276	Salt Marsh	MVTDIASLDIASNASAPLPEKRSRTFEPVIENCNQLNRVSLTIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0182081_13243451	3300019277	Salt Marsh	PLPEKRSNTFESLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0182081_15703791	3300019277	Salt Marsh	KAVLFFSTIVTDIASLEIASNASDPLPENRSKTFEPWIENCNQLNRVSFTADLVGLSPSIKGNLNLNPLYNPELTRNEF
Ga0182081_16245451	3300019277	Salt Marsh	LDIASNASDPLPEKRSKTFEPGIENRNQLKRVSLTIDLVGLSPSLEGNLNFNPLNNPELILNEF
Ga0182068_13893072	3300019280	Salt Marsh	IASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELI
Ga0182077_11954741	3300019281	Salt Marsh	LPEKRSNTFEPLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0182077_12897152	3300019281	Salt Marsh	SLDIASNASEPLPEKRSKTFEPRIENCNQLNRVSLTIDLVGLSPSIEGNLNFNPLNNPELIRNEF
Ga0182077_16306191	3300019281	Salt Marsh	TMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF
Ga0182075_11193931	3300019282	Salt Marsh	TEIASLDIASNASDPLPEKRSRTFDPVISNCNQLNKVSLTIDLVGLSPSLEGNLNFKPLNNPELIRNEL
Ga0182075_14472932	3300019282	Salt Marsh	LSFSTMVTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEL
Ga0182075_16074531	3300019282	Salt Marsh	KRSNTFESLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0182058_12219803	3300019283	Salt Marsh	MVTDIASLDNASNASDPLPEKRSRTFDPGIANCNQLNRVSLTIDLVGLNPSLEGNLNFNPLYNPELIRNEF
Ga0182058_14417501	3300019283	Salt Marsh	IASLDIASNASDPLPEKRSRTFDPVISNCNQLNKVSLTIDLVGLSPSLEGNLNFKPLNNPELIRNEF
Ga0182058_15383763	3300019283	Salt Marsh	KTVLSFSTMVTDIAPLDIASNASDPLPEKRSRTFDPEIENCIQLNRVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0182058_16535582	3300019283	Salt Marsh	VTDIASLDIASNASDPLPEKRSKTFEPVIENCNQLKRVSLTNDFVGLSSSLEGNLNFDPLNNPELIRNEL
Ga0182058_17211902	3300019283	Salt Marsh	KESKTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIVLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0194024_11123182	3300019765	Freshwater	PLPEKRSRTFDPVISNCNQLNKVSLTIDLVGLSPSLEGNLNFKPLNNPELIRNEF
Ga0181555_11092613	3300020051	Salt Marsh	EKRSKTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0181595_103083251	3300020053	Salt Marsh	VLSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF
Ga0181603_102662121	3300020174	Salt Marsh	SLDIASNASDPLPEKRSKTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0181599_10414124	3300020178	Salt Marsh	ASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELI
Ga0181578_101859623	3300020189	Salt Marsh	SLDIDSKASDPLPEKRSNTFESLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0181578_104941471	3300020189	Salt Marsh	FKELKTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF
Ga0181570_105076191	3300020207	Salt Marsh	AFKKLEFFFKESKTVLSFSTIVTEIASLDIASNASDPLPEKRSRTFDPVISNCNQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEF
Ga0255775_12605752	3300022907	Salt Marsh	SDPLPEKRSRTFDPGIANCNQLNKVSLTIVLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0255758_102287522	3300022928	Salt Marsh	NTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF
Ga0255780_102668821	3300022935	Salt Marsh	SNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFKPLYNPELIRNEL
Ga0255770_100666321	3300022937	Salt Marsh	DPLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYKPELIRNEF
Ga0255770_101173793	3300022937	Salt Marsh	ASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLAGNLNFNPLYNPELIRNEF
Ga0255754_105167392	3300022939	Salt Marsh	TMVTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNRVSLTIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0255764_100626172	3300023081	Salt Marsh	MVTVIASLEIASNASDPLPENKSKTLEPLIENCNQLNRVSFTDDLVGLSPSIEGNLNFSPLNKPELIRNEF
Ga0255774_104769121	3300023087	Salt Marsh	SNASDPLPEKRSRTFEPGIANCNQLNKVSLIIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0255784_101379373	3300023108	Salt Marsh	IASNASDPLPENRSKTLEPLIENCNQLNRVSFTDDLVGLSPSIEGNLNFSPLNKPELIRNEF
Ga0255784_103186512	3300023108	Salt Marsh	IASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYKPELIRNEF
Ga0255784_104053042	3300023108	Salt Marsh	MVTEIASLDNASNASDPLPEKRSRTFDPVISNCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0255743_103759652	3300023110	Salt Marsh	MVTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0255760_101237091	3300023115	Salt Marsh	FSTMVTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLAGNLNFNPLYNPELIRNEF
Ga0255760_103076451	3300023115	Salt Marsh	LAFFFKKSKAVLFFSTIVTDIASLEIASNASDPLPENRSKTFEPWIENCNQLNRVSFTADLVGLSPSIEGNLNLNPLYNPELTRNEF
Ga0255751_101174743	3300023116	Salt Marsh	KLFEFFFKESKTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLAGNLNFNPLYNPELIRNEF
Ga0255751_105194792	3300023116	Salt Marsh	MVTEIAALDIASNASDPLPEKRSRIFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0255757_101614141	3300023117	Salt Marsh	TDIASLDIDSKASDPLPEKRSNTFEPLIENCNQLNRVSLTIDFVGRSPSIVGNLNFDPLSNPELIRNEF
Ga0255762_105675862	3300023119	Salt Marsh	SIIVTDIASLDIASNASDPLPEKRSRTLEPEIENCNQLNRVSLTIDLVGLSPSLEGNLNFKPLNNPELILNEF
Ga0255761_102075973	3300023170	Salt Marsh	KKLEFFFKESKTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF
Ga0255761_105871881	3300023170	Salt Marsh	FKKLEFFFKQSKTFLSFSTMVTEIAALDIASNASDPLPEKRSRIFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0255766_103869832	3300023172	Salt Marsh	SNASDPLPENRSKTLEPLIENCNQLNRVSFTDDLVGLSPSIEGNLNFSPLNKPELIRNEF
Ga0255766_105148452	3300023172	Salt Marsh	MVTEIASLDIASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0255759_101376723	3300023178	Salt Marsh	FFKESKTILSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLIIDLVGLSPSLEGNLNFNPLYNPELIRNEF
Ga0255759_105002151	3300023178	Salt Marsh	FNESKTILSFSTMVTDIAFLDIASNASDPLPEKRSRTFEPEIENCNQLNKVSLIIDLVGLSPSLEGNLNFNPLNNPELIRNEF
Ga0255768_102230803	3300023180	Salt Marsh	EFFFKESKTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFEPGIANCNQLNKVSLTIDLVGLSPSLEGNLNFNPLYSPELIRNEF
Ga0255763_12113191	3300023273	Salt Marsh	ASLDIASNASDPLPEKRSRTFDPGIANCSQLNKVSLTIDLVGLSPSLEGNLNFNPLYNPELI
Ga0208004_10859422	3300025630	Aqueous	ASNASDPLPEKRSRTFDPGIANCNQLNKVSLTIDLVGLSPLLEGNLNFNPLYNPELIRNE
Ga0233450_100257084	3300028115	Salt Marsh	SKTVLSFSTMVTEIASLDIASNASDPLPEKRSRTFDPGIENCNQLNKVSLTIDLVGLSPSLEGNLNFNPLNNPELIRNEF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064390

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences