Metagenome / Metatranscriptome Family F064160

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064160
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	51 residues
Representative Sequence	VKLLLVPLAILAFVLFLLLLGAIGLAISFAVLYVFGRAWRLVSGGPRRDR
Number of Associated Samples	111
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	53.12 %
% of genes near scaffold ends (potentially truncated)	14.73 %
% of genes from short scaffolds (< 2000 bps)	58.14 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.372 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.279 % of family members)
Environment Ontology (ENVO)	Unclassified (51.938 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.814 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF12840	HTH_20	6.20
PF04116	FA_hydroxylase	3.88
PF13450	NAD_binding_8	3.10
PF05187	ETF_QO	3.10
PF00440	TetR_N	1.55
PF00296	Bac_luciferase	1.55
PF02817	E3_binding	1.55
PF00561	Abhydrolase_1	1.55
PF01435	Peptidase_M48	0.78
PF13419	HAD_2	0.78
PF02583	Trns_repr_metal	0.78
PF00890	FAD_binding_2	0.78
PF13581	HATPase_c_2	0.78
PF13420	Acetyltransf_4	0.78
PF05974	DUF892	0.78
PF01594	AI-2E_transport	0.78
PF13738	Pyr_redox_3	0.78
PF13471	Transglut_core3	0.78
PF01625	PMSR	0.78
PF01923	Cob_adeno_trans	0.78
PF00743	FMO-like	0.78
PF01370	Epimerase	0.78
PF13524	Glyco_trans_1_2	0.78
PF00117	GATase	0.78
PF00145	DNA_methylase	0.78
PF01040	UbiA	0.78
PF03853	YjeF_N	0.78
PF00486	Trans_reg_C	0.78
PF02771	Acyl-CoA_dh_N	0.78
PF01196	Ribosomal_L17	0.78
PF12680	SnoaL_2	0.78
PF04343	DUF488	0.78
PF14417	MEDS	0.78
PF02737	3HCDH_N	0.78
PF03364	Polyketide_cyc	0.78
PF00293	NUDIX	0.78
PF00497	SBP_bac_3	0.78
PF01642	MM_CoA_mutase	0.78
PF03538	VRP1	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	3.88
COG2440	Ferredoxin-like protein FixX	Energy production and conversion [C]	3.10
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	3.10
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.55
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	1.55
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.78
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.78
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.78
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.78
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.78
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.78
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	0.78
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	0.78
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.78
COG0062	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain	Nucleotide transport and metabolism [F]	0.78
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.78
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.78
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.78
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.78
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG0203	Ribosomal protein L17	Translation, ribosomal structure and biogenesis [J]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.37 %
Unclassified	root	N/A	11.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.37 %
Unclassified	root	N/A	11.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.37 %
Unclassified	root	N/A	11.63 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	74.42 %
Unclassified	root	N/A	11.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	73.64 %
Unclassified	root	N/A	11.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.93 %
Unclassified	root	N/A	11.63 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	10.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	19.38 %
Unclassified	root	N/A	11.63 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.38 %
Unclassified	root	N/A	11.63 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	3.10 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.38 %
Unclassified	root	N/A	11.63 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	1.55 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.38 %
Unclassified	root	N/A	11.63 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1.55 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104483200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300001405\|JGI20186J14852_1001398	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300002568\|C688J35102_118830074	Not Available	602	Open in IMG/M
3300002568\|C688J35102_120677662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1338	Open in IMG/M
3300002568\|C688J35102_120987136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7185	Open in IMG/M
3300002568\|C688J35102_120988268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8430	Open in IMG/M
3300002906\|JGI25614J43888_10116537	Not Available	696	Open in IMG/M
3300003320\|rootH2_10207288	All Organisms → cellular organisms → Bacteria	1771	Open in IMG/M
3300004643\|Ga0062591_102036813	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005329\|Ga0070683_100009440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8344	Open in IMG/M
3300005330\|Ga0070690_100386754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1024	Open in IMG/M
3300005332\|Ga0066388_104164145	Not Available	737	Open in IMG/M
3300005335\|Ga0070666_10056798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2644	Open in IMG/M
3300005337\|Ga0070682_100000026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	191388	Open in IMG/M
3300005354\|Ga0070675_100000070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	59599	Open in IMG/M
3300005365\|Ga0070688_100000028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	67085	Open in IMG/M
3300005367\|Ga0070667_100699400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	938	Open in IMG/M
3300005434\|Ga0070709_11036936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	654	Open in IMG/M
3300005436\|Ga0070713_100000005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	201526	Open in IMG/M
3300005437\|Ga0070710_11426123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300005535\|Ga0070684_100008294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	8116	Open in IMG/M
3300005535\|Ga0070684_100959710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	802	Open in IMG/M
3300005544\|Ga0070686_101482667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571	Open in IMG/M
3300005548\|Ga0070665_100001275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	30231	Open in IMG/M
3300005548\|Ga0070665_101513085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	679	Open in IMG/M
3300005577\|Ga0068857_100265991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1575	Open in IMG/M
3300005578\|Ga0068854_100000268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35449	Open in IMG/M
3300005578\|Ga0068854_101684923	Not Available	579	Open in IMG/M
3300005587\|Ga0066654_10686981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300005614\|Ga0068856_100000136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	74026	Open in IMG/M
3300005719\|Ga0068861_100053572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	3070	Open in IMG/M
3300005841\|Ga0068863_100177894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2042	Open in IMG/M
3300006163\|Ga0070715_10256738	All Organisms → cellular organisms → Bacteria → Proteobacteria	916	Open in IMG/M
3300006237\|Ga0097621_100161549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1926	Open in IMG/M
3300006804\|Ga0079221_10118853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1332	Open in IMG/M
3300006881\|Ga0068865_100000040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	72979	Open in IMG/M
3300006881\|Ga0068865_100343101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1208	Open in IMG/M
3300009098\|Ga0105245_10000117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	76863	Open in IMG/M
3300009098\|Ga0105245_10150534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2200	Open in IMG/M
3300009174\|Ga0105241_10080653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2547	Open in IMG/M
3300009177\|Ga0105248_10000037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	180751	Open in IMG/M
3300009551\|Ga0105238_12365053	Not Available	567	Open in IMG/M
3300009840\|Ga0126313_10051481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2905	Open in IMG/M
3300009840\|Ga0126313_10301044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1254	Open in IMG/M
3300009840\|Ga0126313_10557744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	921	Open in IMG/M
3300010335\|Ga0134063_10525953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300010371\|Ga0134125_10172639	All Organisms → cellular organisms → Bacteria	2409	Open in IMG/M
3300010375\|Ga0105239_10448224	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300010375\|Ga0105239_10549379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1315	Open in IMG/M
3300012496\|Ga0157353_1032967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300012892\|Ga0157294_10102275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	737	Open in IMG/M
3300012929\|Ga0137404_12167909	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300012955\|Ga0164298_10796010	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300012961\|Ga0164302_10693253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300012961\|Ga0164302_11707042	Not Available	528	Open in IMG/M
3300012977\|Ga0134087_10127102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1090	Open in IMG/M
3300012988\|Ga0164306_10066307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2246	Open in IMG/M
3300013100\|Ga0157373_10184721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1469	Open in IMG/M
3300013102\|Ga0157371_10004648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11895	Open in IMG/M
3300013105\|Ga0157369_10000051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	165672	Open in IMG/M
3300013296\|Ga0157374_10437460	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300013296\|Ga0157374_10455796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1280	Open in IMG/M
3300013306\|Ga0163162_10311292	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300013307\|Ga0157372_10000146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	77952	Open in IMG/M
3300013308\|Ga0157375_12770275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	586	Open in IMG/M
3300014326\|Ga0157380_10463486	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300014487\|Ga0182000_10097425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M
3300014968\|Ga0157379_11778515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300014969\|Ga0157376_12590878	Not Available	547	Open in IMG/M
3300015197\|Ga0167638_1079480	Not Available	660	Open in IMG/M
3300015200\|Ga0173480_10073156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1600	Open in IMG/M
3300015264\|Ga0137403_10985766	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300015374\|Ga0132255_105133318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	554	Open in IMG/M
3300018433\|Ga0066667_10519951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	983	Open in IMG/M
3300018920\|Ga0190273_10222040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1201	Open in IMG/M
3300019356\|Ga0173481_10247250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	801	Open in IMG/M
3300019889\|Ga0193743_1035870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2311	Open in IMG/M
3300020061\|Ga0193716_1066717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1630	Open in IMG/M
3300020070\|Ga0206356_10121768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3049	Open in IMG/M
3300020081\|Ga0206354_11297909	Not Available	686	Open in IMG/M
3300020082\|Ga0206353_10368780	Not Available	1010	Open in IMG/M
3300020181\|Ga0196958_10058522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1207	Open in IMG/M
3300021339\|Ga0193706_1000347	All Organisms → cellular organisms → Bacteria	28432	Open in IMG/M
3300021339\|Ga0193706_1089114	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300021363\|Ga0193699_10085430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1261	Open in IMG/M
3300022883\|Ga0247786_1000480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6831	Open in IMG/M
3300024055\|Ga0247794_10004379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2991	Open in IMG/M
3300024426\|Ga0196960_10000054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42593	Open in IMG/M
3300025321\|Ga0207656_10000285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17446	Open in IMG/M
3300025504\|Ga0208356_1000005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	131014	Open in IMG/M
3300025903\|Ga0207680_10002080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9381	Open in IMG/M
3300025905\|Ga0207685_10217052	Not Available	907	Open in IMG/M
3300025913\|Ga0207695_10587833	All Organisms → cellular organisms → Bacteria → Terrabacteria group	994	Open in IMG/M
3300025924\|Ga0207694_11577223	Not Available	553	Open in IMG/M
3300025926\|Ga0207659_10000018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	156920	Open in IMG/M
3300025927\|Ga0207687_10000070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	77432	Open in IMG/M
3300025927\|Ga0207687_10087299	All Organisms → cellular organisms → Bacteria	2266	Open in IMG/M
3300025928\|Ga0207700_10000003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	500797	Open in IMG/M
3300025938\|Ga0207704_10000079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	58183	Open in IMG/M
3300025938\|Ga0207704_11000692	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300025941\|Ga0207711_10000011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	518817	Open in IMG/M
3300025944\|Ga0207661_10000239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36056	Open in IMG/M
3300025986\|Ga0207658_10453790	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300026067\|Ga0207678_11149229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	687	Open in IMG/M
3300026078\|Ga0207702_10000202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	70333	Open in IMG/M
3300026116\|Ga0207674_11099927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	764	Open in IMG/M
3300026118\|Ga0207675_100076031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	3143	Open in IMG/M
3300026142\|Ga0207698_10002679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10595	Open in IMG/M
3300026308\|Ga0209265_1167685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300026319\|Ga0209647_1025976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3518	Open in IMG/M
3300027164\|Ga0208994_1046588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300027895\|Ga0209624_10007072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7379	Open in IMG/M
3300028379\|Ga0268266_10001389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29082	Open in IMG/M
3300028379\|Ga0268266_10795391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	913	Open in IMG/M
3300028712\|Ga0307285_10000004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	246966	Open in IMG/M
3300028721\|Ga0307315_10143089	Not Available	723	Open in IMG/M
3300028754\|Ga0307297_10044884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1346	Open in IMG/M
3300028768\|Ga0307280_10000021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51932	Open in IMG/M
3300028778\|Ga0307288_10000004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	219644	Open in IMG/M
3300028790\|Ga0307283_10079882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	827	Open in IMG/M
3300028876\|Ga0307286_10261460	Not Available	635	Open in IMG/M
3300030510\|Ga0268243_1026695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1170	Open in IMG/M
3300032080\|Ga0326721_10000051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	96017	Open in IMG/M
3300032205\|Ga0307472_100017886	All Organisms → cellular organisms → Bacteria	3795	Open in IMG/M
3300034000\|Ga0334918_004875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1807	Open in IMG/M
3300034172\|Ga0334913_060134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	802	Open in IMG/M
3300034173\|Ga0334925_116913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300034687\|Ga0334905_000676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4998	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.69%
Host-Associated	Host-Associated	40.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.69%
Plants	Host-Associated → Plants	40.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.18%
Roots	Host-Associated → Plants → Roots	0.78%
Rhizome	Host-Associated → Plants → Rhizome	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.05%
Loam	Environmental → Terrestrial → Soil → Loam	16.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.40%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.53%
Sand	Environmental → Terrestrial → Soil → Sand	2.33%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	1.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.78%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.05%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.10%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.33%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	2.33%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.55%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.55%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	1.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.78%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.78%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.28%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.20%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.10%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.33%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.55%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.55%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.55%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.78%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.78%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil	0.78%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.78%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001405	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020181	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300024426	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034000	Biocrust microbial communities from Mojave Desert, California, United States - 14HMC	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034173	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC	Environmental	Open in IMG/M
3300034687	Soil microbial communities from Mojave Desert, California, United States - 1NOC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1044832001	3300000364	Soil	YGRVKLLLVPFAILAFILFLIVVGAIGLGVAFAVIYVFGRIWRLLNRGGPRLRS*
JGI20186J14852_10013983	3300001405	Arctic Peat Soil	VKFLLVPFAIVAFVLFLLLLGAIGLVVSMAVLSVSGRIWRLVMRR*
C688J35102_1188300742	3300002568	Soil	VKLLLIPFAILAFVLFLLVLGAIGFAVAFAVLAVLGRAWRLVSSGRPSRR*
C688J35102_1206776622	3300002568	Soil	VKLLFVPIAIVAFMIFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGRARTR*
C688J35102_1209871367	3300002568	Soil	VKLLLIPVVIVAFVIFLLVLGAIGFAVAFGVLALLGRAWRLVAGGRHSR*
C688J35102_1209882685	3300002568	Soil	VKLILVPFAVIAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLISGARPRPR*
JGI25614J43888_101165372	3300002906	Grasslands Soil	VKFLLIPLGILAFVLFLLLLGAIGLAAAMSVLWVVGRVWRFVTGVGRARSA*
rootH2_102072883	3300003320	Sugarcane Root And Bulk Soil	GRRRAPRSLVPSLLPSPLQDYAAVHILLIPFAVIAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGRARTR*
Ga0062591_1020368132	3300004643	Soil	MVKVLLVPLAILAFVVFLLVLGAVGMAVSLAVLWVLGRVWRFVTRADRRDRRRQQT*
Ga0070683_1000094408	3300005329	Corn Rhizosphere	LPLQDYGGVKLLLVPLAIVAFVLFLLLLGAIGLAISFAVLYVCGAAWRLVAGGRRHNR*
Ga0070690_1003867542	3300005330	Switchgrass Rhizosphere	LQDYAGVKLLLVPLAIVAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVSGGRRRDR*
Ga0066388_1041641451	3300005332	Tropical Forest Soil	VKLLLVPLAIVAFVVFLLVLGAIGFAVAFAVLAVLGRVWRLVTGGRRSP*
Ga0070666_100567982	3300005335	Switchgrass Rhizosphere	VKLLLVPLAIVAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVSGGRRRDR*
Ga0070682_100000026105	3300005337	Corn Rhizosphere	VKLLLVPFAIVAFILFLLLLGAIGFAVAFAVLAVLGRAWRLVFRRAH*
Ga0070675_10000007055	3300005354	Miscanthus Rhizosphere	VKLLLVPLAILAFVLFLLLLGAIGLAISFAVLYVFGRAWRLVSRDPRRNR*
Ga0070688_10000002822	3300005365	Switchgrass Rhizosphere	LKLLFVPIVVIAFVVFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRSRGT*
Ga0070667_1006994002	3300005367	Switchgrass Rhizosphere	VVKVLLVPLAILAFVVFLLVLGAIGMAVSLAVLWVFGRIWRFVSRVDRRDRRRQQT*
Ga0070709_110369362	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VCVKFLLIPLAIVAFILFLLLLGAIGLVVAMGVLAFFGRIWRFVSGGSRGRTRSA*
Ga0070713_10000000544	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLLIPLAIVAFVIFLLILGAIGLAVAFAVLYVLGKFWRLISRAGRPRRRRASA*
Ga0070710_114261232	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LIPLAVIAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGRSRTR*
Ga0070684_1000082942	3300005535	Corn Rhizosphere	VKLLLVPLAIVAFVLFLLLLGAIGLAISFAVLYVCGAAWRLVAGGRRHNR*
Ga0070684_1009597102	3300005535	Corn Rhizosphere	MAILAFVLFLLLLGAIGLAVSFAVLYVLGQAWRLVAGGRPRRR*
Ga0070686_1014826672	3300005544	Switchgrass Rhizosphere	VKLLLVPLAIVAFVLFLLLLGAIGLAISFAVIYVVGGAWRLVSGGRRRDR*
Ga0070665_1000012758	3300005548	Switchgrass Rhizosphere	LQDYAGVKLLLVPLAIVAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVSGGRRRAS*
Ga0070665_1015130852	3300005548	Switchgrass Rhizosphere	VKLLLVPLAVVAFVLFLLLLGAIGLAISFAVIYVVGGAWRLVTGGRRRNR*
Ga0068857_1002659912	3300005577	Corn Rhizosphere	LQDYAGVKLLLVPLAIVAFVLFLLLLGAIGLAISFAVLYAFGRAWRLVSRDPRPRR*
Ga0068854_10000026832	3300005578	Corn Rhizosphere	VKLLLIPFAIVAFILFLLLLGAIGFAVAFAVLAVFGRAWRLVFRRSH*
Ga0068854_1016849232	3300005578	Corn Rhizosphere	LQDYAGVKLLLVPLAIVAFVLFLLVLGTIGLAIAFAVIYVVGGAWRFVSGGRRRGR*
Ga0066654_106869812	3300005587	Soil	DVKLLLIPFAVIAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGHARTHGTR*
Ga0068856_10000013633	3300005614	Corn Rhizosphere	VKLLLIPFVVIAFVVFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGRARSGRSA*
Ga0068861_1000535723	3300005719	Switchgrass Rhizosphere	VKVLFVPLAILAFVLFLLLLGAIGMAISMAVISAVGKLWRVASRADRRDRRRQQA*
Ga0068863_1001778942	3300005841	Switchgrass Rhizosphere	VKLLFVPLAIVAFVLFLLVLGAIGLVVSMGVLAFFGKIWRVVMRR*
Ga0070715_102567382	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLLVPFAIVAFVLFLLLLGAIGFAVAFAVLAVVGRAWRLVFRRGTS*
Ga0097621_1001615492	3300006237	Miscanthus Rhizosphere	VKVLFVPLAILAFVLFLLVLGAIGMAISMAVISAFGKIWRVASRADRRDRRRQQA*
Ga0079221_101188532	3300006804	Agricultural Soil	VKLLLIPFAVIAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGRARTR*
Ga0068865_10000004049	3300006881	Miscanthus Rhizosphere	VKLLLIPFAILAFVIFLLVLGAIGFAVAFAVLAVLGRAWRLVSGGRPGRRRKAA*
Ga0068865_1003431012	3300006881	Miscanthus Rhizosphere	VKLLFVPCAIVAFVLFLLLLGAIGLVVSMAVLAFFGKLWRLVMRR*
Ga0105245_1000011757	3300009098	Miscanthus Rhizosphere	LKLLFVPILVIAFVVFLLVLGAIGFAVSFAVLAVLGRAWRLLSGGRSRGA*
Ga0105245_101505342	3300009098	Miscanthus Rhizosphere	VKLLLIPFAIVAFVLFLLLLGAIGFAVAFAVLAVVGRAWRLVFRRGTG*
Ga0105241_100806533	3300009174	Corn Rhizosphere	VKLLLVPFAIVAFIFFLLLLGAIGFAVAFAVLAVVGRAWRLVFRRGH*
Ga0105248_10000037111	3300009177	Switchgrass Rhizosphere	VKILFVPIVIVAFVLFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRSRGA*
Ga0105238_123650531	3300009551	Corn Rhizosphere	LQDYAGVKLLLVPLAIVAFVLFLLVLGTIGLAIAFAVIYVVGGAWRFVSGGRRRAG*
Ga0126313_100514814	3300009840	Serpentine Soil	MEDYGGVKLLFVPIVAVAFLIFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRPRRR*
Ga0126313_103010442	3300009840	Serpentine Soil	VKLLLVPLAIVAFVLFLLLLGAIGLAISFAVIYVVGGAWRLVAGGRRRNR*
Ga0126313_105577442	3300009840	Serpentine Soil	VKVLFVPLAILAFIVFLLVLGTIGMAVSLAVLSVLGRLWRFVTGAKRRDRRRRQT*
Ga0134063_105259531	3300010335	Grasslands Soil	SPESPVPSPLPLPLQDYAAVKLLLVPFAILAFVIFLLVLGAIGFAVAFAVLAVLGRAWRLVSGGRARTR*
Ga0134125_101726393	3300010371	Terrestrial Soil	VKLLFVPFAIVAFVLFLLLLGAIGLVVSMGVLAFFGKIWRVVMRRY*
Ga0105239_104482242	3300010375	Corn Rhizosphere	VKFVLIPLGIVAFVLFLLMLGAIGLVAAMGVLSVFGRLWRVVMRR*
Ga0105239_105493792	3300010375	Corn Rhizosphere	VKLLLVPFAIVAFVLFLLLLGAIGFAVAFAVLAVLGRAWRLVFRGGGAR*
Ga0157353_10329672	3300012496	Unplanted Soil	VKLLLVPLAIFAFVLFLLVLGAIRLAVAFAVLAALGRAWRLAFRGRAPR*
Ga0157294_101022751	3300012892	Soil	ITCRSAAVGPITLQDYGGVKLLLVPLAIIAFVLFLLILGAIGLAISFAVLYVFSGAWRLVSGGRARGR*
Ga0137404_121679092	3300012929	Vadose Zone Soil	VENRGVTLLLIPAAIVAFVLFLLLLGAIGLIVAMGVLWFFGRIWRLVMRR*
Ga0164298_107960101	3300012955	Soil	VKLLLVPFAILAFIIFLIVVGAIGLGVAFAVIYVFGRIWRLLNRGGPRLRS*
Ga0164302_106932532	3300012961	Soil	PIAIVAFVVFLLVLGAIGLAVAFAVLAVLGRLWRLVFRRGAAA*
Ga0164302_117070422	3300012961	Soil	LPLQDYADVKLLLIPFAILAFVIFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRSAGA*
Ga0134087_101271022	3300012977	Grasslands Soil	VKLLLIPFAILAFVLFLLLLGAIGFAVAFAVLAVLGRAWRLVSGGRPSRR*
Ga0164306_100663072	3300012988	Soil	VKLLFVPLAIVAFVLFLLLLGAIGLVISMGVLAFFGKVWRVIMRR*
Ga0157373_101847212	3300013100	Corn Rhizosphere	VKLLLIPFAILAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLISGGRPGRRRKTA*
Ga0157371_1000464813	3300013102	Corn Rhizosphere	VHILLVPFAVVAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLVAGGRARPR*
Ga0157369_10000051120	3300013105	Corn Rhizosphere	LEDYGALKFLFVPIVVIAFVVFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRSRGS*
Ga0157374_104374601	3300013296	Miscanthus Rhizosphere	VKLLFVPLAVVAFVLFLLVLGAIGLVVSVGVLAFFGKIWRVVMRR*
Ga0157374_104557962	3300013296	Miscanthus Rhizosphere	VKLLLIPFAVIAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGRSGRRRKAA*
Ga0163162_103112922	3300013306	Switchgrass Rhizosphere	VVKVLLVPLAILAFVVFLLVLGAIGMAVSLAVLWVFGRVWRLISRADRRGRRRQQT*
Ga0157372_1000014664	3300013307	Corn Rhizosphere	VKLLLIPFAIVAFILFLLLLGAIGFAVAFAVLAVFGRAWRLVFRRGH*
Ga0157375_127702752	3300013308	Miscanthus Rhizosphere	MKILFVPFAILAFLLFLLLLGAIGLAVATAVLAMLGRVWRFVMRR*
Ga0157380_104634863	3300014326	Switchgrass Rhizosphere	LPLQDYAGVKLLLVPLAILAFVFFLLVLGAIGLAISFAVIYVVGGAWRLVSGGRRRAG*
Ga0182000_100974252	3300014487	Soil	VKLLFVPIVVAAFLVFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRSRGA*
Ga0157379_117785151	3300014968	Switchgrass Rhizosphere	IIAFVVFLLILGAIGLAISFGILYVLGGAWRLVTGGRSRNR*
Ga0157376_125908782	3300014969	Miscanthus Rhizosphere	LQDYAGVKLLLVPLAIVAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVSGGRRRNR*
Ga0167638_10794802	3300015197	Glacier Forefield Soil	VKFLLVPFAIVAFVLFLLLLGAIGLLASMAVLSVFGRIWRLVMRR*
Ga0173480_100731562	3300015200	Soil	VKLLLVPLAIIAFVLFLLILGAIGLAISFAVLYVFSGAWRLVSGGRARGR*
Ga0137403_109857662	3300015264	Vadose Zone Soil	VTLLLIPAAIVAFVLFLLLLGAIGLIVAMGVLWFFGRIWRLVMRR*
Ga0132255_1051333182	3300015374	Arabidopsis Rhizosphere	VKFLLVPFAIAAFVAFLLLLGAIGLVIAMTVLSAFGRLWRFLNRSGRRQRS*
Ga0066667_105199512	3300018433	Grasslands Soil	VLPWVPSPLQDYAGVKLLLIPFAVIAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGRARAR
Ga0190273_102220403	3300018920	Soil	VKFLLIPLAIIAFVLFLLILGAIGLAIAFGVIYVVGGAWRLVSGGRPARR
Ga0173481_102472502	3300019356	Soil	AIIAFILFLLILGAIGLAISFAVLYVFGGAWRLISGGRARGR
Ga0193743_10358703	3300019889	Soil	VAKLLLIPFAVVAFVLFLLLLGAIGLTIALGVLWVFGRAWGLVSRGGRRRRS
Ga0193716_10667172	3300020061	Soil	VKVLLIPFAIVLFVLFLLLLGAIGLAVSMTVLSAFGRLWRLLNRSAQPRRS
Ga0206356_101217684	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MAIAAFVVFLLVLGAIGLAISFAILYLLSGAWRLVSGLGRLGRTRSR
Ga0206354_112979091	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	FAIVAFILFLLLLGAIGFAVAFAVLAVVGRAWRLVFRRGTS
Ga0206353_103687802	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLLVPFAIVAFILFLLLLGAIGFAVAFAVLAVVGRAWRLVFRRGTS
Ga0196958_100585222	3300020181	Soil	VKFLLIPLAILAFVLFLLLLGAIGLAISFAVLYVFGRAWRLLTGGRAGRR
Ga0193706_10003479	3300021339	Soil	VKFLLVPFAIVAFVAFLLLLGAIGLVIAMGVLAVFGRIWRLVMRR
Ga0193706_10891141	3300021339	Soil	AGGQSRRVKFLLVPFAILAFVLFLLLLGAIGLVIAMTVLSAFGRIWRLVMRR
Ga0193699_100854302	3300021363	Soil	VKFLLVPFAIVALVLLLLLLGAIGLVVSMAVLTVFGKIWRLVMRR
Ga0247786_10004809	3300022883	Soil	LQDYAGVKLLLVPFAILAFVLFLLLLGAIGLAIAFAVLYVFGRAWRLVGGGPRRDR
Ga0247794_100043793	3300024055	Soil	VKLLLIPFAVIAFVIFLLVLGAIGFAVAFSVLAVLGRGWRLVSGGRARTR
Ga0196960_1000005424	3300024426	Soil	VKFLLIPLAIIAFVIFLLILGAIGLAISFAVLYVFGRAWRLVTGGGPGRR
Ga0196960_101385332	3300024426	Soil	FVLFLLVLGAIGLAISFGVIYVFGRIWRLITGGRPGRRGRGSAMS
Ga0207656_1000028520	3300025321	Corn Rhizosphere	VKLLLIPFAIVAFILFLLLLGAIGFAVAFAVLAVFGRAWRLVFRRSH
Ga0208356_100000544	3300025504	Arctic Peat Soil	VKFLLVPFAIVAFVLFLLLLGAIGLVVSMAVLSVSGRIWRLVMRR
Ga0207680_100020804	3300025903	Switchgrass Rhizosphere	VKLLLVPLAIVAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVSGGRRRDR
Ga0207685_102170522	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLLVPFAIVAFVLFLLLLGAIGFAVAFAVLAVVGRAWRLVFRRGTS
Ga0207695_105878332	3300025913	Corn Rhizosphere	VKLLFVPLAIVAFVLFLLVLGAIGLVVSMGVLAFFGKIWRVVMRR
Ga0207694_115772232	3300025924	Corn Rhizosphere	LVPLAIVAFVLFLLVLGTIGLAIAFAVIYVVGGAWRFVSGGRRRAG
Ga0207659_100000189	3300025926	Miscanthus Rhizosphere	LQDYAGVKLLLVPLAILAFVLFLLLLGAIGLAISFAVLYVFGRAWRLVSRDPRRNR
Ga0207687_1000007038	3300025927	Miscanthus Rhizosphere	LKLLFVPILVIAFVVFLLVLGAIGFAVSFAVLAVLGRAWRLLSGGRSRGA
Ga0207687_100872992	3300025927	Miscanthus Rhizosphere	VKLLLIPFAIVAFVLFLLLLGAIGFAVAFAVLAVVGRAWRLVFRRGTG
Ga0207700_10000003234	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLLIPLAIVAFVIFLLILGAIGLAVAFAVLYVLGKFWRLISRAGRPRRRRASA
Ga0207704_1000007917	3300025938	Miscanthus Rhizosphere	VKLLLIPFAILAFVIFLLVLGAIGFAVAFAVLAVLGRAWRLVSGGRPGRRRKAA
Ga0207704_110006922	3300025938	Miscanthus Rhizosphere	IVAFVLFLLLLGAIGLVVSMAVLAFFGKLWRLVMRR
Ga0207711_10000011432	3300025941	Switchgrass Rhizosphere	VKILFVPIVIVAFVLFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRSRGA
Ga0207661_100002394	3300025944	Corn Rhizosphere	VKLLLVPLAIVAFVLFLLLLGAIGLAISFAVLYVCGAAWRLVAGGRRHNR
Ga0207658_104537902	3300025986	Switchgrass Rhizosphere	VVKVLLVPLAILAFVVFLLVLGAIGMAVSLAVLWVFGRIWRFVSRVDRRDRRRQQT
Ga0207678_111492292	3300026067	Corn Rhizosphere	LQDYAGVKLLLVPLAILAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVTGGRHRGR
Ga0207702_1000020247	3300026078	Corn Rhizosphere	VKLLLIPFVVIAFVVFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGRARSGRSA
Ga0207674_110999272	3300026116	Corn Rhizosphere	LQDYAGVKLLLVPLAIVAFVLFLLLLGAIGLAISFAVLYAFGRAWRLVSRDPRPRR
Ga0207675_1000760313	3300026118	Switchgrass Rhizosphere	VKVLFVPLAILAFVLFLLLLGAIGMAISMAVISAVGKLWRVASRADRRDRRRQQA
Ga0207698_100026797	3300026142	Corn Rhizosphere	LQDYAALKLLLVPVAIVAFVLFLLVLGAIGLAISFAVIYVVGGAWRLVSGGRRRR
Ga0209265_11676851	3300026308	Soil	DVKLLLIPFAVIAFVIFLLVLGAIGFAVAFAVLAVLGRGWRLVSGGHARTHGTR
Ga0209647_10259765	3300026319	Grasslands Soil	VKFLLIPLGILAFVLFLLLLGAIGLAAAMSVLWVVGRVWRFVTGVGRARSA
Ga0208994_10465882	3300027164	Forest Soil	VKFLLIPLGIIAFILFLLLLGAIGLAIAMGVLSALGRIWRLLSRRGYPQRS
Ga0209624_100070728	3300027895	Forest Soil	VKLLLVPFAIVAFVLFLLMLGAIGLLIAMGVLAVCGRVWRLVMRR
Ga0268266_1000138911	3300028379	Switchgrass Rhizosphere	LQDYAGVKLLLVPLAIVAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVSGGRRRAS
Ga0268266_107953912	3300028379	Switchgrass Rhizosphere	VKLLLVPLAVVAFVLFLLLLGAIGLAISFAVIYVVGGAWRLVTGGRRRNR
Ga0307285_1000000473	3300028712	Soil	LQDYAGVKLLLVPLAILAFVLFLLLLGAIGLAISFAVLYVFGRAWRLVSGGPRRDR
Ga0307315_101430892	3300028721	Soil	MEDYGGVKLLLVPFAVLAFVVFLLVLGAIGFAVAFAVLAVLGRAWRLVSGGRSRGA
Ga0307297_100448841	3300028754	Soil	VKFLFVPIVVVAFLIFLLVLGAIGFAVSFAVLAVLGRAWRLISG
Ga0307280_1000002121	3300028768	Soil	LQDYAAVKLLLVPLAIIAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVSGGRRRNR
Ga0307288_10000004213	3300028778	Soil	LQDYAGVKLLLVPLAILAFVLFLLLLGSIGLAISFAVLYVFGWAWRLVSGGRRRGR
Ga0307283_100798822	3300028790	Soil	AIIAFVLFLLVLGTIGLAISFAVIYVVGGAWRLVSGGRRRNR
Ga0307286_102614602	3300028876	Soil	VKLLLVPLAILAFVLFLLLLGAIGLAISFAVLYVFGRAWRLVSGGPRRDR
Ga0268243_10266952	3300030510	Soil	VKLLFVPIVVAAFLVFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRSRGA
Ga0326721_1000005195	3300032080	Soil	VKFLLIPLAILAFVLFLLILGAIGLAIAFGVIYVVGGAWRLVSGGRPGRRKASG
Ga0307472_1000178865	3300032205	Hardwood Forest Soil	QVPPSLPSSLQDYAGVHILLVPFAVIAFVIFLLVLGAIGFAVSFAVLAVLGRAWRLVSGGRSRTP
Ga0334918_004875_1669_1806	3300034000	Hypolithic Biocrust	LIPLAILAFVCFLLLLGAIGLAISFAVIYLVVGAWRLVSGGHRRG
Ga0334913_060134_596_763	3300034172	Sub-Biocrust Soil	LQDYAGVKLLLIPLAILAFVCFLLLLGAIGLAISFAVIYLVGGAWRLVSGGHRRG
Ga0334925_116913_352_522	3300034173	Hypolithic Biocrust	LQDYGAVKLLLVPIAILAFAVFLLVLGAIGFAVSFAVLAVLGRAWRVVSAGRPRRR
Ga0334905_000676_1350_1502	3300034687	Soil	VKVLFVPIVAIAFVVFLLVLGAIGFAVSFAVLAALGRLWRLVSGGSSRSG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064160

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences