NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F063916

Metagenome / Metatranscriptome Family F063916

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F063916
Family Type Metagenome / Metatranscriptome
Number of Sequences 129
Average Sequence Length 44 residues
Representative Sequence RAIPVGVIEISDQQTRFVPITDRKKLTGAVLAGIGFGMWLGWRRRR
Number of Associated Samples 116
Number of Associated Scaffolds 129

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.69 %
% of genes near scaffold ends (potentially truncated) 92.25 %
% of genes from short scaffolds (< 2000 bps) 90.70 %
Associated GOLD sequencing projects 112
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (89.922 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(16.279 % of family members)
Environment Ontology (ENVO) Unclassified
(24.806 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.364 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.
1E4A_09563650
2JGI12703J13194_1085481
3JGIcombinedJ26739_1006272891
4JGIcombinedJ26739_1010073131
5JGIcombinedJ51221_102561231
6Ga0062389_1000911953
7Ga0066395_101790772
8Ga0066673_105882981
9Ga0066671_102338543
10Ga0068869_1002095593
11Ga0070707_1012220522
12Ga0070699_1010781792
13Ga0070735_104876761
14Ga0070735_108007242
15Ga0070733_104448411
16Ga0070732_107200172
17Ga0066692_109681341
18Ga0066707_107212222
19Ga0066700_107065092
20Ga0066702_100534654
21Ga0066691_100785123
22Ga0070717_100286148
23Ga0075015_1000820361
24Ga0070712_1007119651
25Ga0070765_1006865971
26Ga0068871_1019135821
27Ga0066660_102141023
28Ga0066710_1018626772
29Ga0099829_110540461
30Ga0105247_104973051
31Ga0105248_107239542
32Ga0116222_11659581
33Ga0116221_13103873
34Ga0116220_102537482
35Ga0116217_105840381
36Ga0126373_126217241
37Ga0126378_128261561
38Ga0126381_1020669442
39Ga0126381_1025541701
40Ga0134124_102244783
41Ga0137392_104122611
42Ga0137382_112554211
43Ga0137363_110877471
44Ga0137395_104734883
45Ga0137396_102425821
46Ga0137407_115193892
47Ga0157369_102794854
48Ga0163162_104086672
49Ga0182015_109433212
50Ga0182024_107012211
51Ga0181525_100758152
52Ga0182038_111578751
53Ga0187820_13278531
54Ga0187806_10451614
55Ga0187809_100856531
56Ga0187781_101772602
57Ga0187882_13886261
58Ga0187889_104230063
59Ga0187784_107720692
60Ga0187772_104373742
61Ga0210403_1000269517
62Ga0210403_107628461
63Ga0210403_110311741
64Ga0210399_104503752
65Ga0210395_103886211
66Ga0210395_108886241
67Ga0210395_113284262
68Ga0210406_110147791
69Ga0210385_102961582
70Ga0210386_101791501
71Ga0210383_116294041
72Ga0210394_107156851
73Ga0210384_104286852
74Ga0210391_107071662
75Ga0210409_105834431
76Ga0210409_112692291
77Ga0126371_138280832
78Ga0242669_11012632
79Ga0212123_102135094
80Ga0242665_101462312
81Ga0224562_10174901
82Ga0209171_101045765
83Ga0207656_102771411
84Ga0208691_10481501
85Ga0207692_110614702
86Ga0207646_105388294
87Ga0209577_104395352
88Ga0209222_10430002
89Ga0209329_11119852
90Ga0209076_10883861
91Ga0209009_11233101
92Ga0209248_100451114
93Ga0209039_101114601
94Ga0209580_102623522
95Ga0209380_104940522
96Ga0209624_101261672
97Ga0209624_107716072
98Ga0209168_106550282
99Ga0265351_10071032
100Ga0268266_1000644815
101Ga0268266_100868236
102Ga0268264_106023251
103Ga0137415_101530451
104Ga0302267_102693402
105Ga0222749_105704221
106Ga0311368_100346421
107Ga0302150_102713462
108Ga0302183_104010981
109Ga0265746_10145962
110Ga0073994_123589891
111Ga0074036_107792551
112Ga0170823_149400473
113Ga0170824_1278686961
114Ga0302307_102086301
115Ga0302324_1002743924
116Ga0310686_1104519971
117Ga0265314_103668631
118Ga0310813_105501573
119Ga0307474_101649671
120Ga0307474_104267972
121Ga0307474_106794662
122Ga0307468_1017047961
123Ga0307475_104125681
124Ga0307479_100768677
125Ga0307479_101106242
126Ga0306922_104780451
127Ga0307471_1041858361
128Ga0348332_116451032
129Ga0335080_114125652
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 31.08%    β-sheet: 0.00%    Coil/Unstructured: 68.92%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

51015202530354045RAIPVGVIEISDQQTRFVPITDRKKLTGAVLAGIGFGMWLGWRRRRExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
89.9%10.1%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Soil
Grasslands Soil
Grass Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Palsa
Permafrost
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Palsa
Bog
Plant Litter
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
3.9%7.0%3.9%4.7%3.1%6.2%16.3%6.2%7.0%4.7%3.1%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E4A_095636502170459003Grass SoilGGGARAIPVGFIEVSDQQARFVPITDRKKLAGAAAIGIGLGMWLGWRRRR
JGI12703J13194_10854813300001100Forest SoilVRTIPVGVIEVSDQPTRFVPITDRKKLTGAVLASIGLGMLLGWRRRR*
JGIcombinedJ26739_10062728913300002245Forest SoilGVIEVSDQQTRFIPITSRKKMAGAVFVGSLLGIFLGWRKRR*
JGIcombinedJ26739_10100731313300002245Forest SoilIEVSDQQTRFIPITNRKKMAGVALAGTLLGIVLSWRKRR*
JGIcombinedJ51221_1025612313300003505Forest SoilVRAIPVGVIEISEQRTCFVPITDRKKLTGAVVTGIGLGILLGWRSRRR*
Ga0062389_10009119533300004092Bog Forest SoilTIPVGVIEISDQPTRFIPITSRKKLAAAIVGGILFGLLFARRRRR*
Ga0066395_1017907723300004633Tropical Forest SoilIRAVPVGVIEVSSNQPTRFVPITDRKKLGAAAMAGIVVGMWLGWRRRR*
Ga0066673_1058829813300005175SoilGVVRAVPVGVFEVGSHGTRFVSITERRKLASVLATGVALGMWLGWRRRH*
Ga0066671_1023385433300005184SoilIEVSSQPTRFVPISDRKKLTAAVFLGLGLGMLLGFRRRR*
Ga0068869_10020955933300005334Miscanthus RhizosphereAVPVGVIEVSIHQTRFVPITDRRKLTGALLAGIGLGMWLGWRRRR*
Ga0070707_10122205223300005468Corn, Switchgrass And Miscanthus RhizosphereVPVGVIEVSEQHTCFVPITDRKKLTGALLAGIAFGMWLGWRRLR*
Ga0070699_10107817923300005518Corn, Switchgrass And Miscanthus RhizosphereHAVPVGVVEVSDQQTRFVPISDRKKLTGMLLLGVGMGMWLNRRRRS*
Ga0070735_1048767613300005534Surface SoilRTCFVPITDRKKLTGAVVTGIGLGILLGWRSRRR*
Ga0070735_1080072423300005534Surface SoilVGVVEVSAQNTRFVPISDRKKLAGAVALGALLGVP*
Ga0070733_1044484113300005541Surface SoilVIEISDQQTCFVPITDRKKLTGALLAGIGFGMWLGWRNRR*
Ga0070732_1072001723300005542Surface SoilAIPVGVIEVSDQQTRFVPITDHKKLAGAVLAGIGLGMWLGWRRRR*
Ga0066692_1096813413300005555SoilVGVIEISDQQTRFVQITDRKKLTGAILAGIGLGMWLG*
Ga0066707_1072122223300005556SoilVGVIEVSDQQTRFVPISDRKKLTGVLLLGVGLGMWLGYRR*
Ga0066700_1070650923300005559SoilVGVIEISDQQTRFVPITDRKKLTGAVLVGIGLGMFLGWRRRH*
Ga0066702_1005346543300005575SoilQQTRFVPITDRKKLTGAVLVGIGLGMFLGWRRRH*
Ga0066691_1007851233300005586SoilVRAIPVGVIEISDQQTRFVPITDRKKLTGAVLAGIGFGMWLGWRRRGRGV*
Ga0070717_1002861483300006028Corn, Switchgrass And Miscanthus RhizosphereGGGARAIPVGVIEVSEQPTRFVPITDRKKLTGAVLVGIGLGLWLGWRRRKFNS*
Ga0075015_10008203613300006102WatershedsVRAVPVGVIEISDHPTRFVPVTDRKKLAGAVLVGIGLGVWLGWRRWR*
Ga0070712_10071196513300006175Corn, Switchgrass And Miscanthus RhizosphereEVSNQQTRFVPISDKRKLVGAVLAGISFGIWWGWRRHR*
Ga0070765_10068659713300006176SoilRAIPVGVIEISDQQTSFVPITDRKKLTGAVLAGIGLGVLLGWRTRR*
Ga0068871_10191358213300006358Miscanthus RhizospherePVGVIEISDQQTRFVPITDRKKLTGAVVVGIGLGLWLGWRRRH*
Ga0066660_1021410233300006800SoilRAVPVGVIEVSDQPTRFVPISDRKKLTGAVLVGLALGMLMSLRRR*
Ga0066710_10186267723300009012Grasslands SoilVIEISDQQTRFVPITDRKKLTGAVLAGIGLGVWLGWRRWR
Ga0099829_1105404613300009038Vadose Zone SoilVIEVSDQQTRFVPISDRKKLTGVLLLGVGLGMWLGHRR*
Ga0105247_1049730513300009101Switchgrass RhizosphereEVSNQQTRFIPITDRRKLAGALLAGIGFGMWLGWRRRR*
Ga0105248_1072395423300009177Switchgrass RhizosphereGAVRAVPVGVIEVSIHQTRFVPITDRRKLTGALLAGIGLGMWLGWRRRR*
Ga0116222_116595813300009521Peatlands SoilGVVEISDQQTCFVPITSRKKLAVAVLAGIVLGIWVGWRRRG*
Ga0116221_131038733300009523Peatlands SoilGARTVPVGVIEISDQPTCFVPITDRKKLTEALLAGIGFGMWLGWRNRR*
Ga0116220_1025374823300009525Peatlands SoilVRAVPVGVIEISDQQTCFVPITDRKKLTGAVLAGIGLGVLLGWRARR*
Ga0116217_1058403813300009700Peatlands SoilEGGGGAGGVRAVPVGVIEISDQPTRFVPISNHKKLTGAVLAGIGFGMLLGWRRR*
Ga0126373_1262172413300010048Tropical Forest SoilGVIEISDHQTRFVPITDRRKLSAAILIGAGFGMWLARSRRH*
Ga0126378_1282615613300010361Tropical Forest SoilGVQAVPIGVIEVSKQQTRFVPITDRKKLGGAVLAGMVLGMFWRWQRRH*
Ga0126381_10206694423300010376Tropical Forest SoilVEVSEQQTRFVPISDRKKLTAAAFGGIVLGMWLGWRRRR*
Ga0126381_10255417013300010376Tropical Forest SoilSKQQTRFVPISDRKKLSAAVLTGMVIGMFWRWRRRH*
Ga0134124_1022447833300010397Terrestrial SoilGGGVRAIPVGVIEVSHQSTRFIPITDRKKLTGAVLAGIGVGIWLAWTRRR*
Ga0137392_1041226113300011269Vadose Zone SoilVIEISDQQFRFVPITDSKKLTGAVLAGIGFGMWLGWRRRR*
Ga0137382_1125542113300012200Vadose Zone SoilQQTRFVPITDRKRLAGAVLAGIGLGMWLGWRRRR*
Ga0137363_1108774713300012202Vadose Zone SoilQQTRFVPITDRKKMTGALLAGIGFGMWLGWRRHR*
Ga0137395_1047348833300012917Vadose Zone SoilRAVPVGIIEISDQQTRFVPITDRKKLAAATLVGIGLGMWLGWCRRR*
Ga0137396_1024258213300012918Vadose Zone SoilRAIPVGVIEISDQQTRFVPITDRKKLTGAVLAGIGFGMWLGWRRRR*
Ga0137407_1151938923300012930Vadose Zone SoilGVRAIPVGVIEISDQQTRFVPITDRKKLTGAVLAGIGLGMWLGWRRRR*
Ga0157369_1027948543300013105Corn RhizospherePVGVIEVSHQQTRFVPITDRKKLTGTLLAGIGLGMWLAWSRRR*
Ga0163162_1040866723300013306Switchgrass RhizosphereVIEVSNQQTRFIPITDRRKLAGALLAGIGFGMWLGWRRRR*
Ga0182015_1094332123300014495PalsaRAVPVGVIEISEQRTCFVPVTDRKKLAGAVVAGIGLGILLSWRSRRR*
Ga0182024_1070122113300014501PermafrostEVSDQQTRFVPITDRKRFAGAVLAGIGLGMLLGWRRRR*
Ga0181525_1007581523300014654BogGGARVVPLGVIEISEQQTTFVPITSRKKLTGVLLGGIGLGMLLGWRRLRSR*
Ga0182038_1115787513300016445SoilSAQQTRFVPISDQKKLGSVLLAGIGLGLLMAWRRKR
Ga0187820_132785313300017924Freshwater SedimentPVGVVEVSDQQTRFVPINDRKKVAGAIAMGVGLGIFLAWRRRR
Ga0187806_104516143300017928Freshwater SedimentGGGVRTVPVGVIEISDQPTCFVPITDRKKLTGALLAGIGFGMWLGWRNRR
Ga0187809_1008565313300017937Freshwater SedimentGGGARTVPVGVIEISDQPTCFVPITDRKKLTGALLAGIGFGMWLGWRNRR
Ga0187781_1017726023300017972Tropical PeatlandEISGQATRFVPISDRKKLTGAVVAGIGLGLWLGWRRRR
Ga0187882_138862613300018021PeatlandRAIPVGVIEISDQQETRFVPITDRKKLTGAILAGIGLGMWLGWRRRR
Ga0187889_1042300633300018023PeatlandIDISDQQETRCVPITDRKKLTGAILAGIGLGMWLGWRRRR
Ga0187784_1077206923300018062Tropical PeatlandGGGGARAIPVGVIEISDQQTRFVPITDRKKLTAATVAGIGLGIWLSWRRRH
Ga0187772_1043737423300018085Tropical PeatlandIPVGVIEISDQQTRFVPITDRKKLTAATVAGIGLGIWLSWRRRH
Ga0210403_10002695173300020580SoilVGVIEVSDQQTRFVPITDRKKLTGAVLTGIGLGMFLGWRRRR
Ga0210403_1076284613300020580SoilRAVAVGVIEVSDRQTRFVPITDRKRLAGAVLVGIGLGMLLGWRRRR
Ga0210403_1103117413300020580SoilEISEHQTRFIPITSRKKLTGAVIAGILLGISFGWRRRRR
Ga0210399_1045037523300020581SoilVGVIEISDQPTCFVPITDRKKLTGAAVAGIGLGILLGWRSRRR
Ga0210395_1038862113300020582SoilVGVIEISDLRTCFVPITDRKKLTGAVLAGVGLGILLGWSARR
Ga0210395_1088862413300020582SoilSARSEGRGGVGGVRAIPVGVIEVSDQQIHFVPITDRKRLAGAVLAGIGLGMLLGWRRRH
Ga0210395_1132842623300020582SoilGGGGAVRAVPIGVIEISDQPARFVPISNHKKLTAAVLAGIGFGMLMGWRRRR
Ga0210406_1101477913300021168SoilQTRFVPITDRKKLTGAVLAGIVLGMWVGWRRVRRH
Ga0210385_1029615823300021402SoilIPVGVIEISDQHTCFIPITSRKKLAGAIVVGALLGIFLGWRRRRR
Ga0210386_1017915013300021406SoilIPVGVIEVTDQHTRFIPITSSKKLAGFVLAGALLGMIFGRRKRR
Ga0210383_1162940413300021407SoilEGGGGGCGVRAVPVGVIDVSDQGTVFVPITSRHKLAGAVVAGVGLGIFLSWRRRKK
Ga0210394_1071568513300021420SoilPVGVIEISEQRTCFVPITDRKKLTGAVVAGIGLGILLGWRSRRR
Ga0210384_1042868523300021432SoilVSTGQTRFVPITSRKKLVAASFGGIVVGALIGWLGRRR
Ga0210391_1070716623300021433SoilISDQQTSFVPITDRKKLTGAVLAGIGLGVLLGRRRRR
Ga0210409_1058344313300021559SoilGGVRAIPVGVIEISDQQTRFVPITDRTKLTGAVLAGIGLGMWLGWRRRG
Ga0210409_1126922913300021559SoilPVGVIEISEQRTCFVPITDRKKLTGAVVTGIGLGILLGWRSRRR
Ga0126371_1382808323300021560Tropical Forest SoilAIPVGVIEISDLQTRFVPITDRKKLTAAAVAGIGLGIWLSWRRRH
Ga0242669_110126323300022528SoilGGGGAGVRAIPVGVIEISDQHTCFIPITSRKKLAGAIVVGALLGIFLSWRRRRR
Ga0212123_1021350943300022557Iron-Sulfur Acid SpringARAIPVGVIEISDLRTCFVPITDRKKLTGAVLAGVGLGILLVWSARR
Ga0242665_1014623123300022724SoilGGAVRAVPIGVIEISDQPARFVPISNHKKLTAAVLAGIGFGMLMGWRKRR
Ga0224562_101749013300022733SoilGVRAIPVGVIEISDHPTSFVPITDRKKLTGAVLAGIGLGILLGWRTRR
Ga0209171_1010457653300025320Iron-Sulfur Acid SpringPIGVIEVSDQQTRFVPITDRKRLAGAVLAGIGLGMLLGWRRRR
Ga0207656_1027714113300025321Corn RhizosphereAVPVGVIEVSNQQTRFVPITDRKKLTGALLAGIGFGMWLAWSRRR
Ga0208691_104815013300025612PeatlandVRAIPVGVIEISDQQTRFIPITSRKKLTGAVVAGILLGISLGWRRRRR
Ga0207692_1106147023300025898Corn, Switchgrass And Miscanthus RhizosphereGGARAIPVGVIEVSEQPTRFVPITDRKKLTGAVLVGIGLGLWLGWRRRKFNS
Ga0207646_1053882943300025922Corn, Switchgrass And Miscanthus RhizosphereATPVGVIEISDQQTRFVPITDRKRLAGAVLAGIGLGIFLGWRRRR
Ga0209577_1043953523300026552SoilRAIPVGVIEISDQQTRFVPITDRKKLAGAILAGIGFGMWLGWRGGRR
Ga0209222_104300023300027559Forest SoilPVGVIEVSDQQTRFIPITSRKKMAGAVFVGSLLGIFLGWRKRR
Ga0209329_111198523300027605Forest SoilVQNLIAQQTRFVPITDRKKLTGAVLAGIGIGMWLGWRRRR
Ga0209076_108838613300027643Vadose Zone SoilGGGVRAIPVGVIEISDQQTRFVPITDRKKLTGAVLVGIGLGVWLGWRRRR
Ga0209009_112331013300027667Forest SoilGVIEVSDQQTRFVPITDRKRLAGAVLAGIGLGILLGWRRRH
Ga0209248_1004511143300027729Bog Forest SoilGCGGAGVRAIPVGVIEISDQQTRFIPITSRKKLAGAILGGILLGITLGWRRRRR
Ga0209039_1011146013300027825Bog Forest SoilPLGVIEVSAEQTRFVPITSRRKLAGALVAGVGFGILLAWRRLRSR
Ga0209580_1026235223300027842Surface SoilVIEISDHQTRFVPIATDRRKLAGAIATGIGMGLWLARLRR
Ga0209380_1049405223300027889SoilLAIPAGVMEISDQQTRFVPITDRKKLAGAVLAGISFGMWLGWRRRR
Ga0209624_1012616723300027895Forest SoilVGVIEIGDQQTRFVPITDRKKLTGAVLVGTGFGMRLGWRKRR
Ga0209624_1077160723300027895Forest SoilEISDRRTCFVPITDRKKLTGAVLAGVGLGILLGWSARR
Ga0209168_1065502823300027986Surface SoilVGVVEVSAQNTRFVPISDRKKLAGAVALGALLGVP
Ga0265351_100710323300028020SoilEVSDQHTRFVPITDRKRLVGAVLAGIGLGMWLGWRRRR
Ga0268266_10006448153300028379Switchgrass RhizosphereRAVPVGVIEVSNQQTRFVPITDRKKLTGALLAGIGFGMWLAWSRRR
Ga0268266_1008682363300028379Switchgrass RhizosphereGVIEVSHQQTRFVPITDRKKLTGTLLAGIGLGMWLAWSRRR
Ga0268264_1060232513300028381Switchgrass RhizosphereGVRAVPVGVIEVSNQPTRFVPITDRRKLTGAVLAGIGFGMWLGWRRRR
Ga0137415_1015304513300028536Vadose Zone SoilSDQQTRFVPITDRKTLTGAVLAGIGLGMWLGWRRRR
Ga0302267_1026934023300028745BogVRAIPVGVIEVSDQQTRFVPITDRKRFAGAVLAGIGLGMLLGWRRRR
Ga0222749_1057042213300029636SoilVRAVPVGVIEVSEQQTRFVPITDRKKLTGAVLAGIGFGMWVGWRRLRRHESVAQ
Ga0311368_1003464213300029882PalsaGAAVRTIPVGVIEVSDQQTRFIPITSRKKLAAAALVGTLLGISLGWRKRR
Ga0302150_1027134623300029956BogVIELSDQQTRFVPITDRKRFAGAVLAGIGLGMLLGWRRRR
Ga0302183_1040109813300030509PalsaPVGVIEVSDQQTRFIPITSRKKLAGAVFVGSLLGIFLGWRKRR
Ga0265746_101459623300030815SoilGVIDITEKETRFVPITDRKRLGGAVLVGVGLGMLLSWRRRR
Ga0073994_1235898913300030991SoilIEISDQQTRFVPITDRKKLTGVLLAGIGFGMWLGWNRRR
Ga0074036_1077925513300031049SoilAWAIPMGVIEVSDQQTRFVPITDRKRLAGAVLAGIGLGMLLGWRRRR
Ga0170823_1494004733300031128Forest SoilVSDQQTRFVPITDRKRLAGAVLVGIGLGMLLDWRRRR
Ga0170824_12786869613300031231Forest SoilGVIEVSDQQTRFVPITDRKRLAGAVLAGIGLGILLGWRRRR
Ga0302307_1020863013300031233PalsaGVIEISGQQTRFIPITSRKKLTGAVIAGILLGISLGWRRRRR
Ga0302324_10027439243300031236PalsaLRAIPVGVIEISGQQTRFIPITSRKKLTGAVIAGILLGISLGWRRRRR
Ga0310686_11045199713300031708SoilGVRAIPVGVIEVSDQQTRFIPITSRKKMAGALFAGSLLGIFLGWRRRR
Ga0265314_1036686313300031711RhizosphereTVPVGVIEISGQRTCFVPITDRKKLAGAILAGIGLGLWLGWRRRL
Ga0310813_1055015733300031716SoilGVRAVPVGVIEVSNQQTRFVPITDRKKLTGALLAGIGFGMWLAWSRRR
Ga0307474_1016496713300031718Hardwood Forest SoilGVIEVSQEQTRFIPITSRRKLAGAVFAGIVLGLTLSLRRRRH
Ga0307474_1042679723300031718Hardwood Forest SoilEGGSGGGGVLAIPAGVMEISDQQTRFVPITDRKKLAGAVLAGIGFGMWLGWRRRR
Ga0307474_1067946623300031718Hardwood Forest SoilRAVPVGVIEVSHQQTRFVPITDRKKLSGAVLAGIGLGMWLGWRRRR
Ga0307468_10170479613300031740Hardwood Forest SoilGGGVRAVPVGVIEVSDQQTRFVPITDRKKLTGAVLAGIGIGMWLSWHRRR
Ga0307475_1041256813300031754Hardwood Forest SoilVGVIEVSEQQTRFVPISDRKKLTGAVLAGIVFGMWMGWRGLRRH
Ga0307479_1007686773300031962Hardwood Forest SoilGVRAIPVGVIEVSDQQTRFVPITDRKKLTGAVLAGIGLGMFLGWRRRR
Ga0307479_1011062423300031962Hardwood Forest SoilMARAVPVGVVEVSKAANRFVPITDRKKLAGTLRTGIGLGILFGRRRRH
Ga0306922_1047804513300032001SoilGAGGVRAIPVGVIEVSNQQTRFVPITDRKKLTGAVLTGVGLGIWLGWRRRR
Ga0307471_10418583613300032180Hardwood Forest SoilVSNQQTRFVPISDKRKLVGAVLAGISFGIWWGWRRHR
Ga0348332_1164510323300032515Plant LitterAGVRAIPVGVIEVSDQQTRFIPITSRKKMAGAVFVGSLLGIFLGWRKRR
Ga0335080_1141256523300032828SoilGVRAVPVGVIEISNQPTRFVSINDKKKLTGAVIAGIGLGMWLGWRRRR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.