Metagenome / Metatranscriptome Family F063869

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063869
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	39 residues
Representative Sequence	QFDPKVVEVFLSIPERHWVELRENLGSPFRLAHLKNL
Number of Associated Samples	110
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.78 %
% of genes near scaffold ends (potentially truncated)	99.22 %
% of genes from short scaffolds (< 2000 bps)	82.17 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.124 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.930 % of family members)
Environment Ontology (ENVO)	Unclassified (27.132 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.488 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.08% β-sheet: 0.00% Coil/Unstructured: 56.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF01041	DegT_DnrJ_EryC1	19.38
PF00510	COX3	8.53
PF00578	AhpC-TSA	3.88
PF13432	TPR_16	3.10
PF13620	CarboxypepD_reg	3.10
PF00155	Aminotran_1_2	2.33
PF00300	His_Phos_1	0.78
PF10263	SprT-like	0.78
PF12704	MacB_PCD	0.78
PF13649	Methyltransf_25	0.78
PF13358	DDE_3	0.78
PF07676	PD40	0.78
PF03840	SecG	0.78
PF13395	HNH_4	0.78
PF07843	DUF1634	0.78
PF00115	COX1	0.78
PF00012	HSP70	0.78
PF00117	GATase	0.78
PF06202	GDE_C	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	19.38
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	19.38
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	19.38
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	19.38
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	19.38
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	19.38
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	8.53
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG1314	Protein translocase subunit SecG	Intracellular trafficking, secretion, and vesicular transport [U]	0.78
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.78
COG4272	Uncharacterized membrane protein	Function unknown [S]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.12 %
Unclassified	root	N/A	3.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.12 %
Unclassified	root	N/A	3.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.12 %
Unclassified	root	N/A	3.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	65.89 %
Unclassified	root	N/A	3.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	24.81 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.30 %
Unclassified	root	N/A	3.88 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.03 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.53 %
Unclassified	root	N/A	3.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.78 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.78 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.53 %
Unclassified	root	N/A	3.88 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.78 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.78 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.03 %
Unclassified	root	N/A	3.88 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.78 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	0.78 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.78 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.03 %
Unclassified	root	N/A	3.88 %
Acidobacteriaceae bacterium KBS 146	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 146	0.78 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	0.78 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.78 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12185351	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300000955\|JGI1027J12803_108640668	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300004082\|Ga0062384_100480836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	819	Open in IMG/M
3300004120\|Ga0058901_1417340	All Organisms → cellular organisms → Bacteria → Acidobacteria	1215	Open in IMG/M
3300004152\|Ga0062386_100321552	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1236	Open in IMG/M
3300004152\|Ga0062386_100966458	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300004479\|Ga0062595_102001553	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300004635\|Ga0062388_102067333	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300005332\|Ga0066388_102169562	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300005332\|Ga0066388_108310603	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	518	Open in IMG/M
3300005454\|Ga0066687_10720279	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005545\|Ga0070695_101406659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	578	Open in IMG/M
3300005556\|Ga0066707_10380871	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300005568\|Ga0066703_10011062	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4348	Open in IMG/M
3300005569\|Ga0066705_10769805	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 146	576	Open in IMG/M
3300005575\|Ga0066702_10354410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	892	Open in IMG/M
3300006162\|Ga0075030_100008285	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9235	Open in IMG/M
3300006176\|Ga0070765_100732004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	934	Open in IMG/M
3300006176\|Ga0070765_101287410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	690	Open in IMG/M
3300006796\|Ga0066665_10016451	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4499	Open in IMG/M
3300006854\|Ga0075425_101478968	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300006871\|Ga0075434_101696813	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300007076\|Ga0075435_100780372	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300007265\|Ga0099794_10283106	All Organisms → cellular organisms → Bacteria → Acidobacteria	857	Open in IMG/M
3300009089\|Ga0099828_10882535	All Organisms → cellular organisms → Bacteria → Acidobacteria	799	Open in IMG/M
3300009137\|Ga0066709_100465309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1772	Open in IMG/M
3300009143\|Ga0099792_11065222	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300009162\|Ga0075423_10170672	All Organisms → cellular organisms → Bacteria	2283	Open in IMG/M
3300010043\|Ga0126380_11017409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300010048\|Ga0126373_10056071	All Organisms → cellular organisms → Bacteria → Acidobacteria	3517	Open in IMG/M
3300010048\|Ga0126373_10242387	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1770	Open in IMG/M
3300010343\|Ga0074044_11136425	Not Available	510	Open in IMG/M
3300010361\|Ga0126378_12924245	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300010362\|Ga0126377_11563286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300010366\|Ga0126379_10001084	All Organisms → cellular organisms → Bacteria → Acidobacteria	16118	Open in IMG/M
3300010371\|Ga0134125_11010049	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300010373\|Ga0134128_10054427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4618	Open in IMG/M
3300010376\|Ga0126381_101723243	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300011120\|Ga0150983_13599827	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1132	Open in IMG/M
3300011120\|Ga0150983_16139328	All Organisms → cellular organisms → Bacteria → Acidobacteria	995	Open in IMG/M
3300011269\|Ga0137392_10198129	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300012199\|Ga0137383_10833773	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300012202\|Ga0137363_11055559	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300012203\|Ga0137399_10833342	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300012203\|Ga0137399_11563628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300012211\|Ga0137377_10204207	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300012349\|Ga0137387_10287244	All Organisms → cellular organisms → Bacteria → Acidobacteria	1188	Open in IMG/M
3300012351\|Ga0137386_10428985	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300012363\|Ga0137390_10864646	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300012363\|Ga0137390_11548037	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300012923\|Ga0137359_10141200	All Organisms → cellular organisms → Bacteria → Acidobacteria	2144	Open in IMG/M
3300012923\|Ga0137359_10304980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1418	Open in IMG/M
3300012924\|Ga0137413_11047898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	642	Open in IMG/M
3300012925\|Ga0137419_10021436	All Organisms → cellular organisms → Bacteria → Acidobacteria	3784	Open in IMG/M
3300012925\|Ga0137419_10122181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1840	Open in IMG/M
3300012925\|Ga0137419_11843751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300012930\|Ga0137407_10094809	All Organisms → cellular organisms → Bacteria	2545	Open in IMG/M
3300012944\|Ga0137410_10293935	All Organisms → cellular organisms → Bacteria → Acidobacteria	1285	Open in IMG/M
3300012960\|Ga0164301_11148907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300015053\|Ga0137405_1237426	All Organisms → cellular organisms → Bacteria → Acidobacteria	847	Open in IMG/M
3300015054\|Ga0137420_1208768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300015241\|Ga0137418_10085493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2855	Open in IMG/M
3300015245\|Ga0137409_10169743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1983	Open in IMG/M
3300015245\|Ga0137409_10302054	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300016270\|Ga0182036_10437946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1025	Open in IMG/M
3300016294\|Ga0182041_10909829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300016341\|Ga0182035_10016940	All Organisms → cellular organisms → Bacteria → Acidobacteria	4428	Open in IMG/M
3300016341\|Ga0182035_10596316	All Organisms → cellular organisms → Bacteria → Acidobacteria	954	Open in IMG/M
3300016341\|Ga0182035_12031198	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300016422\|Ga0182039_10021800	All Organisms → cellular organisms → Bacteria	3968	Open in IMG/M
3300017822\|Ga0187802_10420872	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300017934\|Ga0187803_10298350	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300017942\|Ga0187808_10257718	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300017942\|Ga0187808_10566653	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300018006\|Ga0187804_10214553	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300019882\|Ga0193713_1138885	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300020199\|Ga0179592_10167549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1002	Open in IMG/M
3300020581\|Ga0210399_10042178	All Organisms → cellular organisms → Bacteria	3656	Open in IMG/M
3300020582\|Ga0210395_10165521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1654	Open in IMG/M
3300020583\|Ga0210401_10089270	All Organisms → cellular organisms → Bacteria	2899	Open in IMG/M
3300021171\|Ga0210405_10272338	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300021178\|Ga0210408_10627145	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	850	Open in IMG/M
3300021180\|Ga0210396_10127502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2294	Open in IMG/M
3300021401\|Ga0210393_10918681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300021401\|Ga0210393_11158784	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300021403\|Ga0210397_10252524	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300021407\|Ga0210383_10065982	All Organisms → cellular organisms → Bacteria	3024	Open in IMG/M
3300021559\|Ga0210409_10521835	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300022726\|Ga0242654_10137443	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300024251\|Ga0247679_1033019	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300024287\|Ga0247690_1004627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1648	Open in IMG/M
3300024290\|Ga0247667_1048622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300026467\|Ga0257154_1050535	Not Available	644	Open in IMG/M
3300026481\|Ga0257155_1090280	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300026529\|Ga0209806_1303357	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300026547\|Ga0209156_10212495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300026551\|Ga0209648_10027749	All Organisms → cellular organisms → Bacteria → Acidobacteria	4947	Open in IMG/M
3300027061\|Ga0209729_1026923	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300027064\|Ga0208724_1027713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300027667\|Ga0209009_1023494	All Organisms → cellular organisms → Bacteria → Acidobacteria	1506	Open in IMG/M
3300027853\|Ga0209274_10470912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300027910\|Ga0209583_10065828	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300028047\|Ga0209526_10879599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300029993\|Ga0302304_10238429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300030509\|Ga0302183_10088725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1220	Open in IMG/M
3300030707\|Ga0310038_10271763	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300031057\|Ga0170834_107414011	Not Available	648	Open in IMG/M
3300031122\|Ga0170822_13597443	Not Available	1268	Open in IMG/M
3300031231\|Ga0170824_127430526	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300031561\|Ga0318528_10038930	All Organisms → cellular organisms → Bacteria → Acidobacteria	2369	Open in IMG/M
3300031564\|Ga0318573_10527113	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300031708\|Ga0310686_106658253	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300031719\|Ga0306917_11443969	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300031753\|Ga0307477_11066215	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300031754\|Ga0307475_10258454	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300031771\|Ga0318546_10238419	All Organisms → cellular organisms → Bacteria → Acidobacteria	1250	Open in IMG/M
3300031771\|Ga0318546_11092924	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031820\|Ga0307473_10160665	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300031962\|Ga0307479_10094642	All Organisms → cellular organisms → Bacteria	2899	Open in IMG/M
3300031962\|Ga0307479_10720348	All Organisms → cellular organisms → Bacteria → Acidobacteria	976	Open in IMG/M
3300031962\|Ga0307479_11523376	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300032001\|Ga0306922_11451002	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300032043\|Ga0318556_10222341	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300032160\|Ga0311301_10351605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2304	Open in IMG/M
3300032180\|Ga0307471_100649344	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300032180\|Ga0307471_102861970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300032261\|Ga0306920_103561814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300032893\|Ga0335069_10016544	Not Available	10282	Open in IMG/M
3300033755\|Ga0371489_0011508	All Organisms → cellular organisms → Bacteria	8019	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.90%
Host-Associated	Host-Associated	3.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.37%
Aquatic	Environmental → Aquatic	8.53%
Plants	Host-Associated → Plants	3.10%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.05%
Freshwater	Environmental → Aquatic → Freshwater	6.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.10%
Peat	Environmental → Terrestrial → Peat	2.33%
Sediment	Environmental → Aquatic → Sediment	1.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.42%
Loam	Environmental → Terrestrial → Soil → Loam	10.08%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.10%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.55%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.56%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.30%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.10%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.78%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.43%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.10%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.10%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.55%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.55%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.55%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024287	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029993	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_121853511	3300000789	Soil	DPKVVEVFLSIPDDHWKELRANLGSPFRLAHLRNLQS*
JGI1027J12803_1086406682	3300000955	Soil	QRCSGTQFDPKVVEVFLSIAELHWKELRESLGSPFRLAHLKNLNAS*
Ga0062384_1004808362	3300004082	Bog Forest Soil	KVVEVFMSIPDQHWIELRQNLGSPFRLAHLKSAMRNSLGG*
Ga0058901_14173402	3300004120	Forest Soil	RCSGTQFDPKVVDVFSTIPEGHWVELREHLGSPFRLAHLKNL*
Ga0062386_1003215522	3300004152	Bog Forest Soil	MAIGAFAEVFLSIPENHWIELRENIGSPFHLTHLRNMGFVPH*
Ga0062386_1009664582	3300004152	Bog Forest Soil	QFDPKIVEVFLSIPESHWIELRENIGSPFRLTHLKNMGLVPQ*
Ga0062595_1020015531	3300004479	Soil	TQFDPKVVEVFLSIPEQHWKELRETLGSPFRLAHLKNLDN*
Ga0062388_1020673331	3300004635	Bog Forest Soil	GTQFDPKVVEVFSTIPEEHWIDLREHLGSPFRLAHLKNL*
Ga0066388_1021695621	3300005332	Tropical Forest Soil	AGTQFDPKIVRVFLSIPEQHWHELRENMGSPFRLAHLKNLNN*
Ga0066388_1083106032	3300005332	Tropical Forest Soil	TQFDPKVVNVFLSIPEQHWIDLRENLGSPFRLAHLKSLQTTQ*
Ga0066687_107202792	3300005454	Soil	QFDPKVVEVFLSIPDEHWKELRANLGSPFRLAHLRNLPA*
Ga0070695_1014066592	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	SGTQFDPKVVEVFSTIPEQHWVDLREHLGSPFRLAHLKNL*
Ga0066707_103808711	3300005556	Soil	DPKVVEVFLSIPEEHWKELRENLGSPFRLAHLRNLQP*
Ga0066703_100110626	3300005568	Soil	CSGSQFDPAVVKVFLSIPEQHWIELRENLGSPFRLAHLKNL*
Ga0066705_107698051	3300005569	Soil	IKRCSASQFDPAVVDVFMTIPEQHWLDLREHLGSPFRLAHLKNL*
Ga0066702_103544103	3300005575	Soil	SQFDPAVVKVFLSIPEQHWIELRENLGSPFRLAHLKNL*
Ga0075030_1000082851	3300006162	Watersheds	GSQFDPKVVDVFMTIPEQHWLDLREHLGSPFRLAHLKNL*
Ga0070765_1007320042	3300006176	Soil	QFDPKVVEVFLSIPEEHWIELRENLGSPFRLAHLRNL*
Ga0070765_1012874101	3300006176	Soil	GTQFDPQVVEVFLSIPEEHWLDLRQNLGSPFRLAHLRNL*
Ga0066665_100164514	3300006796	Soil	QFDPRVVEVFLSIPDQHWMTLRENVESPFRQAHFQNF*
Ga0075425_1014789681	3300006854	Populus Rhizosphere	KVVEVFLSIPEQHWTELRETLGSPFRLAHLKNLDN*
Ga0075434_1016968132	3300006871	Populus Rhizosphere	DPKVVEVFLSIPDDHWRELRENLGSPFRLAHLRNLHN*
Ga0075435_1007803721	3300007076	Populus Rhizosphere	FDPKVVKVFLSIPELHWKELRETLGSPFRLAHLKNLEG*
Ga0099794_102831061	3300007265	Vadose Zone Soil	GSQFDPQVVDVFMSIPEQHWLELRENLGSPFRLAHLKSLQV*
Ga0099828_108825353	3300009089	Vadose Zone Soil	DPAVVDVFMTIPEQHWLDLREHLGSPFRLAHLKNL*
Ga0066709_1004653091	3300009137	Grasslands Soil	PKVVDVFLSIPEQHWMDLRENLGSPFRLAHLKSLQTN*
Ga0099792_110652221	3300009143	Vadose Zone Soil	TQFDPKIAEVFLSIPEEHWAELRANLGSPFRLAHLRNLQS*
Ga0075423_101706724	3300009162	Populus Rhizosphere	DPKVVKVFLSIPELHWKELRETLGSPFRLAHLKNLEG*
Ga0126380_110174091	3300010043	Tropical Forest Soil	DPKAVDVFLSIPEQHWIDLRESLGSPFRLAHLKSLQTN*
Ga0126373_100560714	3300010048	Tropical Forest Soil	FDPEVVRVFMSIPERHWVELRENLGSPFRLAHLKNL*
Ga0126373_102423871	3300010048	Tropical Forest Soil	TQFDPKVAEVFLSIPEERWKELRENLGSPFRLAHLRNLHS*
Ga0074044_111364251	3300010343	Bog Forest Soil	QFDPKVVDVFSTIPEGHWVELREHLGSPFRLAHLKNL*
Ga0126378_129242452	3300010361	Tropical Forest Soil	KVAEVFLSIPENHWKELRESLGSPFRLAHLKNLES*
Ga0126377_115632861	3300010362	Tropical Forest Soil	TQFDPKVVEVFLSIPEQHWIDLRENLGSPFRLAHLKSLQATQ*
Ga0126379_100010841	3300010366	Tropical Forest Soil	IVEVFLSIPEDHWIELRENLGSPFRLTHLKNIGLVPQ*
Ga0134125_110100492	3300010371	Terrestrial Soil	PKVVEVFMSIPEEHWVELRENLGSPFRLAHLRNL*
Ga0134128_100544273	3300010373	Terrestrial Soil	CSGTQFDPKVVEVFSTIPEQHWVDLREHLGSPFRLAHLKNL*
Ga0126381_1017232432	3300010376	Tropical Forest Soil	CAGTQFDPKIVRVFLSIPEQHWHELRENMGSPFRLAHLKNLNN*
Ga0150983_135998271	3300011120	Forest Soil	RCSGTQFDPKVVEVFSTIPEQHWIDLREHLGSPFRLAHLKNL*
Ga0150983_161393282	3300011120	Forest Soil	GTQFDPKVVDVFSTIPEGHWVELREHLGSPFRLAHLKNL*
Ga0137392_101981291	3300011269	Vadose Zone Soil	KIAEVFLSIPEEHWAELRANLGSPFRLAHLRNLQS*
Ga0137383_108337731	3300012199	Vadose Zone Soil	QFDPAVVDVFMTIPEEHWLDLREHLGSPFCLAQLKNL*
Ga0137363_110555593	3300012202	Vadose Zone Soil	DPQVVDVFMSIPEQRWLELRENLGSPFRLAHLKNLQV*
Ga0137399_108333421	3300012203	Vadose Zone Soil	SGSQFDPQVVDVFMSIPEEHWLELRESLGSPFRLAHLKNLQV*
Ga0137399_115636281	3300012203	Vadose Zone Soil	QVVDVFMSIPEEHWLELRESLGSPFRLAHLKNLQV*
Ga0137377_102042071	3300012211	Vadose Zone Soil	GTQFDPKVAEVFLSIPEDHWRELRESLGSPFRLTHLSNLHS*
Ga0137387_102872443	3300012349	Vadose Zone Soil	CSASQFDPAVVDVFMTIPEQHWVELREHLGSPFRLAHLKNL*
Ga0137386_104289851	3300012351	Vadose Zone Soil	SGSQFDPAVVDVFMTIPEQHWLDLREHLGSPFRLAHLKNL*
Ga0137390_108646463	3300012363	Vadose Zone Soil	SGTQFDPKVVEVFMSIPEEHWLELRENLGSPFRLAHLKNL*
Ga0137390_115480371	3300012363	Vadose Zone Soil	CSGSQFDPEVVKVFFSIPQQHWLDLRENLGSPFRLAHLKNL*
Ga0137359_101412001	3300012923	Vadose Zone Soil	PKVAEVFLSIPEDHWRELRESLGSPFRLTHLSNLHS*
Ga0137359_103049802	3300012923	Vadose Zone Soil	SQFDPAVVDVFMTIPEQHWLDLREHLGSPFRLAHLKNL*
Ga0137413_110478982	3300012924	Vadose Zone Soil	FDPQVVEVFLSIPEEHWLELRENLGSPFRLAHLRNL*
Ga0137419_100214361	3300012925	Vadose Zone Soil	GSQFDPAVVDVFMTIPEQHWVDLREHLGSPFRLAHLKNL*
Ga0137419_101221813	3300012925	Vadose Zone Soil	CSGSQFDPAVVDVFMTIPEQHWVDLREHLGSPFRLAHLKNL*
Ga0137419_118437511	3300012925	Vadose Zone Soil	FDPKVVEVFMSIPEEHWLELRENLGSPFRLAHLKNL*
Ga0137407_100948094	3300012930	Vadose Zone Soil	KRCAGTQFDPKIAEVFLSIPEEHWAELRANLGSPFRLAHLRNLQS*
Ga0137410_102939353	3300012944	Vadose Zone Soil	GSQFDPQVVDVFMSIPEEHWLELRENLGSPFRLAHLKNLQV*
Ga0164301_111489071	3300012960	Soil	QFDPKVVEVFATIPEQHWVDLREHLGSPFRLAHLRNL*
Ga0137405_12374261	3300015053	Vadose Zone Soil	QFDPKFDPKVVDVFMTIPEQHWLDLREHLGSPFRLAHLKNL*
Ga0137420_12087681	3300015054	Vadose Zone Soil	FDPAVVDVFMTIPEQHWVDLREHLGSPFRLAHLKNL*
Ga0137418_100854933	3300015241	Vadose Zone Soil	QFDPAVVDVFMTIPEQHWVDLREHLGSPFRLAHLKNL*
Ga0137409_101697431	3300015245	Vadose Zone Soil	VDVFLSIPEQHWLDLRESLGSPFRLAHLKSLQTT*
Ga0137409_103020541	3300015245	Vadose Zone Soil	PKVVEVFLSIPEQHWVELRQNLGSPFRLAHLKNLNN*
Ga0182036_104379462	3300016270	Soil	CAGTQFDPKIVEVFMTIPEQHWMELRENLGSPFRLAHLKNLQAQ
Ga0182041_109098291	3300016294	Soil	PRIVEVFLSIPESHLIDLRENLGSPFRLTHLKNTGLVG
Ga0182035_100169405	3300016341	Soil	RRCAGTQFDPKIVSVFLSIPDKHWQELRQNLGSPFRLAHLKNLNN
Ga0182035_105963163	3300016341	Soil	EVFLSIPESHLIDLRENLGSPFRLTHLKSMGLVPQ
Ga0182035_120311982	3300016341	Soil	CSGSQFDPEVVKVFMSIPEQHWVDLRENLGSPFRLAHIKNL
Ga0182039_100218001	3300016422	Soil	KIVEVFLSIPERHWIDLRENLGSPFRLAQLKNLKS
Ga0187802_104208721	3300017822	Freshwater Sediment	QFDPKIVEVFLSIPEQHWIDLRENLGSPFRLAHLKNLKA
Ga0187803_102983501	3300017934	Freshwater Sediment	DPKIVEVFLSIPEQNWLDIRENLGSPFRLTELKNLKA
Ga0187808_102577183	3300017942	Freshwater Sediment	CAGTQFDPKIVEVFMSIPEAHWIELRENLGSPFRLTQLKNLRA
Ga0187808_105666532	3300017942	Freshwater Sediment	SGSQFDPAVVDVFMSIPEQHWIELRENLGSPFRLAHLKNL
Ga0187804_102145531	3300018006	Freshwater Sediment	PKIVDVFQSIPESHWMELRENLGSPFRLAHLKNLKA
Ga0193713_11388852	3300019882	Soil	FDPKIAKVFLSIPEEHWAELRANLGSPFRLAHLRNLQS
Ga0179592_101675492	3300020199	Vadose Zone Soil	PKVVDVFLSIPEQHWMDLRENLGSPFRLAHLKSLQTN
Ga0210399_100421782	3300020581	Soil	GTQFDPKIVEVFLSIPEQHWVELRENLGSPFRLAHLKNLNN
Ga0210395_101655211	3300020582	Soil	QFDPKVVDVFSTIPEGHWVELREHLGSPFRLAHLKNL
Ga0210401_100892703	3300020583	Soil	GTQFDPKIVEVFLSIPENHWIQLRANLGSPFRLTHPRNMAH
Ga0210405_102723382	3300021171	Soil	GTQFDPKVVEVFMSIPEEHWLELRENLGSPFRLAHLRNL
Ga0210408_106271452	3300021178	Soil	SGTQFDPKVVEVFMSIPEEHWVELRENLGSPFRLAHLRNL
Ga0210396_101275022	3300021180	Soil	SGTQFDPKVVDVFSTIPEGHWVELREHLGSPFRLAHLKNL
Ga0210393_109186811	3300021401	Soil	DPKVVEVFSTIPEEHWIDLREHLGSPFRLAHLKNL
Ga0210393_111587841	3300021401	Soil	PRVAEVFLSIPEEHWKELRENLGSPFRLAHLRNLQS
Ga0210397_102525242	3300021403	Soil	TQFDPKVVEVFMSIPEEHWLELRENLGSPFRLAHLRNL
Ga0210383_100659822	3300021407	Soil	QFDPKIVEVFLSIPEQHWVELRENLGSPFRLAHLKNLNN
Ga0210409_105218351	3300021559	Soil	TQFDPQVVEVFMAMPEQHWLDLRKNLGSPFHLAHLRNL
Ga0242654_101374431	3300022726	Soil	GSQFDPAVVDVFMTIPEQHWLDLREHLGSPFRLAHLKNL
Ga0247679_10330191	3300024251	Soil	CSGTQFDPKVVEVFSTIPEQHWVDLREHLGSPFRLAHLKNL
Ga0247690_10046271	3300024287	Soil	RCSGTQFDPKVVEVFSTIPEQHWVDLREHLGSPFRLAHLKNL
Ga0247667_10486222	3300024290	Soil	PKVVDVFLSIPEQHWIDLRENLGSPFRLAHLKSLQTN
Ga0257154_10505351	3300026467	Soil	DPKVVEVFSTIPEEHWLDLREHLGSPFRLAHLKNL
Ga0257155_10902801	3300026481	Soil	QFDPKIAEVFLSIPEEHWAELRANLGSPFRLAHLRNLQS
Ga0209806_13033571	3300026529	Soil	DPAVVKVFLSIPEQHWIELRENLGSPFRLAHLKNL
Ga0209156_102124951	3300026547	Soil	DPQVVRVFSSIPEQHWIELRENLGSPFRLAHLKNL
Ga0209648_100277494	3300026551	Grasslands Soil	QFDPKVVDVFMTIPERHWLDLRENLGSPFRLAHLKNL
Ga0209729_10269231	3300027061	Forest Soil	GTQFDPKIVSVFLGIADPHWQELRDNLGSPFRLAHLKNFGN
Ga0208724_10277131	3300027064	Forest Soil	IVEVFLSIPENHWIDLRANLGSPFRLTHLRNMGLVPQ
Ga0209009_10234943	3300027667	Forest Soil	SGTQFDPKVVEVFMGIPEEHWVELRENLGSPFRLAHLKNLS
Ga0209274_104709122	3300027853	Soil	RCSGTQFDPKVVEVFSTIPEQHWIDLREHLGSPFRLAHLKNL
Ga0209583_100658283	3300027910	Watersheds	ICRCSGTQFDPKVVEVFSTIPEGHWVDLREHLGSPFRLAHLKNL
Ga0209526_108795992	3300028047	Forest Soil	QFDPKVVEVFMGIPEEHWIELRENLGSPFRLAHLKNLS
Ga0302304_102384291	3300029993	Palsa	PKVVDVFLSIPDQHWIDLRQNLGSPFRLAHLKNAMRNAVNS
Ga0302183_100887251	3300030509	Palsa	FLSIPDQHWIELRQNLGSPFRMAHLKNAMRNNVSS
Ga0310038_102717633	3300030707	Peatlands Soil	FDPKIVEVFNTIPEQHWMELRESLASPFKLAHLRNL
Ga0170834_1074140111	3300031057	Forest Soil	NRGGFLSIPETPWIELRESLGSPFRLTHLKNMGLVPQ
Ga0170822_135974431	3300031122	Forest Soil	RCARKQFDPKIVEVFLSIPENHWIELRGNLGSPFGLTHLRNLSMS
Ga0170824_1274305262	3300031231	Forest Soil	VGTQFDPKVAEVFLSIPEDHWRELRESLGSPFRLTQLRNLHS
Ga0318528_100389301	3300031561	Soil	DPKIVRVFLSIPEQHWHELRENMGSPFRLAHLKNLNN
Ga0318573_105271132	3300031564	Soil	CAGTQFDPKVVKVFLSIPQQHWTELRETLGSPFRLAHLKNLDN
Ga0310686_1066582532	3300031708	Soil	VQTCALPICTQFDPKIAEVFLSIPEQNWIQLRESLGSPFRLTQLKNLNA
Ga0306917_114439691	3300031719	Soil	FDPEVVKVFSSIPEQHWIELREHLGSPFRLAHLRNL
Ga0307477_110662151	3300031753	Hardwood Forest Soil	DPKIVEVFLSIPENHWIDLRENLGSPFRLTHLKNMGLVPQ
Ga0307475_102584543	3300031754	Hardwood Forest Soil	QFDPKVVEVFLSIPERHWVELRENLGSPFRLAHLKNL
Ga0318546_102384193	3300031771	Soil	IVEVFMTIPEQHWMELRENLGSPFRLAHLKNLQAQ
Ga0318546_110929241	3300031771	Soil	TQFDPRVVQVFLAIREDHWKELRETLGSPFRLAHLKNLDA
Ga0307473_101606654	3300031820	Hardwood Forest Soil	QFDPKVVSVFMSIPEEHWLELRENLGSPFRLAHLKNL
Ga0307479_100946426	3300031962	Hardwood Forest Soil	FDPRVVNVFMSIPEEHWLELRENLGSPFKLAHLKNL
Ga0307479_107203484	3300031962	Hardwood Forest Soil	TGTQFDPKVSEVFLSIPEQHWLELRENLGSPFRLAELKNL
Ga0307479_115233761	3300031962	Hardwood Forest Soil	DPAVVDVFMTIPEQHWVELREHLGSPFRLAQLKNL
Ga0306922_114510021	3300032001	Soil	PKIVSVFLSIPDKHWQELRQNLGSPFRLAHLKNLNN
Ga0318556_102223412	3300032043	Soil	FDPKVVKVFLSIPQQHWTELRETLGSPFRLAHLKNLDN
Ga0311301_103516051	3300032160	Peatlands Soil	CAGTQFDPQIVEVFNTIPEQHWLELRESLASPFKLAHLRNL
Ga0307471_1006493441	3300032180	Hardwood Forest Soil	PKVVEVFLSIPEEHWAELRANLGSPFRLAHLRNLQS
Ga0307471_1028619703	3300032180	Hardwood Forest Soil	MSIPEQHWLELRENLGSPFRLAHLKNLQDPSATPS
Ga0306920_1035618141	3300032261	Soil	QFDPRIVEVFLSIPESHLIDLRENLGSPFRLTHLKNTGLVG
Ga0335069_100165441	3300032893	Soil	RRCSGAQFDPKVVEVFLSLPESLWVELCKNLRAPFRLG
Ga0371489_0011508_7903_8019	3300033755	Peat Soil	SQFDPKIVEVFQTIPEQHWLELRETLASPFKLAHLRNI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063869

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences