Metagenome / Metatranscriptome Family F063423

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F063423
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	51 residues
Representative Sequence	MDETGMSEADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDE
Number of Associated Samples	72
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.29 %
% of genes near scaffold ends (potentially truncated)	32.56 %
% of genes from short scaffolds (< 2000 bps)	96.12 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (59.690 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (27.132 % of family members)
Environment Ontology (ENVO)	Unclassified (37.209 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.713 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.11% β-sheet: 0.00% Coil/Unstructured: 57.89%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00805	Pentapeptide	5.43
PF00589	Phage_integrase	1.55
PF07592	DDE_Tnp_ISAZ013	1.55
PF13358	DDE_3	1.55
PF11294	DUF3095	1.55
PF09954	DUF2188	1.55
PF13737	DDE_Tnp_1_5	0.78
PF00171	Aldedh	0.78
PF00724	Oxidored_FMN	0.78
PF02657	SufE	0.78
PF13340	DUF4096	0.78
PF03330	DPBB_1	0.78
PF13683	rve_3	0.78
PF03120	DNA_ligase_OB	0.78
PF13546	DDE_5	0.78
PF00239	Resolvase	0.78
PF09361	Phasin_2	0.78
PF07332	Phage_holin_3_6	0.78
PF07929	PRiA4_ORF3	0.78
PF03992	ABM	0.78
PF02371	Transposase_20	0.78
PF02201	SWIB	0.78
PF03050	DDE_Tnp_IS66	0.78
PF13610	DDE_Tnp_IS240	0.78
PF00106	adh_short	0.78
PF00072	Response_reg	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	5.43
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.78
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.78
COG0272	NAD-dependent DNA ligase	Replication, recombination and repair [L]	0.78
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.78
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	0.78
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.78
COG2166	Sulfur transfer protein SufE, Fe-S cluster assembly	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.78
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.78
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.78
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.78
COG5531	DNA-binding SWIB/MDM2 domain	Chromatin structure and dynamics [B]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
All Organisms	root	All Organisms	40.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
cellular organisms	root	All Organisms → cellular organisms	40.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.05 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.10 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.55 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.55 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.55 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.78 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.78 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1.55 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.78 %
Roseomonas wenyumeiae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas wenyumeiae	0.78 %
Microvirga lupini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	0.78 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.69 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1.55 %
Methylobacterium sp. J-072	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. J-072	0.78 %
Roseomonas wenyumeiae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas wenyumeiae	0.78 %
Microvirga lupini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	0.78 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.78 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105766342	Not Available	543	Open in IMG/M
3300001305\|C688J14111_10230389	Not Available	579	Open in IMG/M
3300001686\|C688J18823_10575691	Not Available	719	Open in IMG/M
3300002568\|C688J35102_117817000	Not Available	508	Open in IMG/M
3300002568\|C688J35102_119954999	Not Available	826	Open in IMG/M
3300002568\|C688J35102_120277674	Not Available	964	Open in IMG/M
3300002568\|C688J35102_120737207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	1452	Open in IMG/M
3300002568\|C688J35102_120856249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1844	Open in IMG/M
3300003575\|Ga0007409J51694_1055139	Not Available	691	Open in IMG/M
3300003576\|Ga0007413J51701_1074749	Not Available	647	Open in IMG/M
3300004153\|Ga0063455_100296104	Not Available	884	Open in IMG/M
3300004153\|Ga0063455_100376223	Not Available	824	Open in IMG/M
3300004479\|Ga0062595_100186724	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300004479\|Ga0062595_102221463	Not Available	538	Open in IMG/M
3300005093\|Ga0062594_101799187	All Organisms → cellular organisms → Bacteria → Proteobacteria	645	Open in IMG/M
3300005337\|Ga0070682_101654946	Not Available	555	Open in IMG/M
3300005347\|Ga0070668_101027163	Not Available	742	Open in IMG/M
3300005355\|Ga0070671_100393792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1185	Open in IMG/M
3300005356\|Ga0070674_100065502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2550	Open in IMG/M
3300005367\|Ga0070667_100973376	Not Available	791	Open in IMG/M
3300005455\|Ga0070663_101997780	Not Available	522	Open in IMG/M
3300005457\|Ga0070662_101126542	Not Available	674	Open in IMG/M
3300005543\|Ga0070672_100170544	Not Available	1809	Open in IMG/M
3300005577\|Ga0068857_100281526	Not Available	1530	Open in IMG/M
3300005618\|Ga0068864_102132772	Not Available	567	Open in IMG/M
3300005834\|Ga0068851_10754256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300005842\|Ga0068858_101447934	Not Available	677	Open in IMG/M
3300005842\|Ga0068858_102308515	Not Available	532	Open in IMG/M
3300005844\|Ga0068862_102137774	Not Available	571	Open in IMG/M
3300006881\|Ga0068865_100018416	All Organisms → cellular organisms → Bacteria	4505	Open in IMG/M
3300006881\|Ga0068865_101933311	Not Available	535	Open in IMG/M
3300006881\|Ga0068865_102186450	Not Available	503	Open in IMG/M
3300007004\|Ga0079218_12636532	Not Available	598	Open in IMG/M
3300007790\|Ga0105679_10606960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1082	Open in IMG/M
3300007790\|Ga0105679_10718681	Not Available	1070	Open in IMG/M
3300009098\|Ga0105245_10521375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1207	Open in IMG/M
3300009098\|Ga0105245_11273973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	784	Open in IMG/M
3300009101\|Ga0105247_11000257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	653	Open in IMG/M
3300009789\|Ga0126307_10098641	All Organisms → cellular organisms → Bacteria	2314	Open in IMG/M
3300009789\|Ga0126307_10156440	All Organisms → cellular organisms → Bacteria	1826	Open in IMG/M
3300009840\|Ga0126313_11106909	Not Available	651	Open in IMG/M
3300009840\|Ga0126313_11112226	Not Available	650	Open in IMG/M
3300009840\|Ga0126313_11253210	Not Available	612	Open in IMG/M
3300010036\|Ga0126305_10018235	All Organisms → cellular organisms → Bacteria	3651	Open in IMG/M
3300010036\|Ga0126305_10169375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1370	Open in IMG/M
3300010036\|Ga0126305_10192181	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300010036\|Ga0126305_10820476	Not Available	633	Open in IMG/M
3300010036\|Ga0126305_11088030	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300010037\|Ga0126304_10111659	All Organisms → cellular organisms → Bacteria	1738	Open in IMG/M
3300010037\|Ga0126304_10244282	Not Available	1180	Open in IMG/M
3300010037\|Ga0126304_10346615	Not Available	987	Open in IMG/M
3300010037\|Ga0126304_10734160	Not Available	668	Open in IMG/M
3300010039\|Ga0126309_10196420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1114	Open in IMG/M
3300010039\|Ga0126309_10944454	Not Available	575	Open in IMG/M
3300010040\|Ga0126308_10373075	Not Available	948	Open in IMG/M
3300010040\|Ga0126308_10525157	Not Available	802	Open in IMG/M
3300010040\|Ga0126308_11157800	Not Available	546	Open in IMG/M
3300010040\|Ga0126308_11170769	Not Available	543	Open in IMG/M
3300010041\|Ga0126312_10859251	Not Available	660	Open in IMG/M
3300010041\|Ga0126312_10939064	Not Available	631	Open in IMG/M
3300010042\|Ga0126314_10436967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	945	Open in IMG/M
3300010042\|Ga0126314_11002052	Not Available	620	Open in IMG/M
3300010044\|Ga0126310_10261975	Not Available	1172	Open in IMG/M
3300010044\|Ga0126310_10376012	Not Available	1004	Open in IMG/M
3300010044\|Ga0126310_11543303	Not Available	546	Open in IMG/M
3300010045\|Ga0126311_10215171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1409	Open in IMG/M
3300010045\|Ga0126311_10457336	Not Available	992	Open in IMG/M
3300010045\|Ga0126311_10807400	Not Available	757	Open in IMG/M
3300010045\|Ga0126311_11262564	Not Available	613	Open in IMG/M
3300010101\|Ga0127481_1097906	Not Available	653	Open in IMG/M
3300010115\|Ga0127495_1031745	Not Available	709	Open in IMG/M
3300010115\|Ga0127495_1085516	Not Available	722	Open in IMG/M
3300010125\|Ga0127443_1128743	Not Available	528	Open in IMG/M
3300010146\|Ga0126320_1056411	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300010166\|Ga0126306_10122646	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300010166\|Ga0126306_10351881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. J-072	1144	Open in IMG/M
3300010166\|Ga0126306_10638643	Not Available	850	Open in IMG/M
3300010166\|Ga0126306_11837489	Not Available	508	Open in IMG/M
3300010371\|Ga0134125_10665200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1149	Open in IMG/M
3300010373\|Ga0134128_12452495	Not Available	575	Open in IMG/M
3300010401\|Ga0134121_11700968	Not Available	654	Open in IMG/M
3300011119\|Ga0105246_11425779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	647	Open in IMG/M
3300012212\|Ga0150985_100211240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	570	Open in IMG/M
3300012212\|Ga0150985_107354093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	957	Open in IMG/M
3300012212\|Ga0150985_114569718	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300012212\|Ga0150985_114748027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1799	Open in IMG/M
3300012212\|Ga0150985_115544248	Not Available	620	Open in IMG/M
3300012212\|Ga0150985_118169423	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300012212\|Ga0150985_121340830	Not Available	759	Open in IMG/M
3300012469\|Ga0150984_100326846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	955	Open in IMG/M
3300012469\|Ga0150984_100969878	Not Available	1309	Open in IMG/M
3300012469\|Ga0150984_102961878	Not Available	552	Open in IMG/M
3300012469\|Ga0150984_103189809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1210	Open in IMG/M
3300012469\|Ga0150984_103630201	Not Available	759	Open in IMG/M
3300012469\|Ga0150984_105330850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300012469\|Ga0150984_106136147	Not Available	500	Open in IMG/M
3300012469\|Ga0150984_106365831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	702	Open in IMG/M
3300012469\|Ga0150984_110722252	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300012897\|Ga0157285_10360703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	512	Open in IMG/M
3300013306\|Ga0163162_10346409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1618	Open in IMG/M
3300013308\|Ga0157375_11806949	Not Available	725	Open in IMG/M
3300014497\|Ga0182008_10226528	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300014497\|Ga0182008_10254215	Not Available	907	Open in IMG/M
3300014968\|Ga0157379_11832197	Not Available	597	Open in IMG/M
3300015265\|Ga0182005_1250143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas wenyumeiae	548	Open in IMG/M
3300015374\|Ga0132255_105113264	Not Available	555	Open in IMG/M
3300017792\|Ga0163161_11736230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	554	Open in IMG/M
3300018466\|Ga0190268_10336173	Not Available	931	Open in IMG/M
3300019767\|Ga0190267_10289516	Not Available	841	Open in IMG/M
3300019767\|Ga0190267_10478366	Not Available	727	Open in IMG/M
3300025899\|Ga0207642_10620152	Not Available	675	Open in IMG/M
3300025901\|Ga0207688_10068484	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300025901\|Ga0207688_10746462	Not Available	620	Open in IMG/M
3300025901\|Ga0207688_10833230	Not Available	584	Open in IMG/M
3300025914\|Ga0207671_11387126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300025919\|Ga0207657_10168566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1775	Open in IMG/M
3300025927\|Ga0207687_10384372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1151	Open in IMG/M
3300025927\|Ga0207687_10442971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1076	Open in IMG/M
3300025927\|Ga0207687_11156734	Not Available	665	Open in IMG/M
3300025927\|Ga0207687_11486509	Not Available	582	Open in IMG/M
3300025933\|Ga0207706_10815211	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300025938\|Ga0207704_11890930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300025940\|Ga0207691_11721796	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300025942\|Ga0207689_10183451	Not Available	1726	Open in IMG/M
3300025961\|Ga0207712_11016264	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300026067\|Ga0207678_10278068	Not Available	1436	Open in IMG/M
3300026095\|Ga0207676_10208641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1732	Open in IMG/M
3300028380\|Ga0268265_11483122	Not Available	682	Open in IMG/M
3300034007\|Ga0334936_058005	Not Available	800	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.39%
Host-Associated	Host-Associated	49.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.61%
Plants	Host-Associated → Plants	49.61%
Aquatic	Environmental → Aquatic	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.13%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.48%
Freshwater	Environmental → Aquatic → Freshwater	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.53%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.63%
Loam	Environmental → Terrestrial → Soil → Loam	7.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.75%
Sand	Environmental → Terrestrial → Soil → Sand	1.55%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.78%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.10%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.55%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.78%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	27.13%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	6.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	6.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.55%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.78%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003575	Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003576	Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010101	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010115	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010125	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1057663422	3300000364	Soil	MDETGMSDADKIEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLXLQPQH*
C688J14111_102303892	3300001305	Soil	LPILDEAAMDETGMSEADKREFVEDVLLTWGEEAAQEVAERYGVDLLALTQEHGDIGPPSRH*
C688J18823_105756911	3300001686	Soil	MAQGEVMMDETGMTYADKVGMIADVLLTWGEEAAQELADRYAVDLEALKDEGERSHRQ*
C688J35102_1178170001	3300002568	Soil	MDDTGMSETDKIGFVEDVLLTWGEEAAQELAERYEVDLDALKREGARS*
C688J35102_1199549992	3300002568	Soil	MDETGMSYADKLEFVDDVLRTWGEEAAREVAERYAVDLEALKREPDGLDRQPRH*
C688J35102_1202776742	3300002568	Soil	MAQGEVMMDETGMTYADKVGMIADVLLTWGEEAAQELAERYAVDLEALKDEGERSHRQ*
C688J35102_1207372071	3300002568	Soil	MDETGMSEADKREFVEDVLLTWGEEAAQEVAERYGVDLLALTQEHGDIGPPSRH*
C688J35102_1208562491	3300002568	Soil	RKMAQGEVMMDETGMTYADKVGMIADVLLTWGEEAAQELADRYAVDLEALKDEGERSHRQ
Ga0007409J51694_10551392	3300003575	Avena Fatua Rhizosphere	MDDTGMSHADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDEQA*
Ga0007413J51701_10747492	3300003576	Avena Fatua Rhizosphere	MDDTGMSHADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRE
Ga0063455_1002961042	3300004153	Soil	MAQGEVMMDETGMTYADKVGMIADVLLTWGEEAAQELAERYAVDLEALKGEGERSHRQ*
Ga0063455_1003762231	3300004153	Soil	MDETGMTYADKVGMIADVLLTWGEEAAQELADRYAIDLEALKDEGERSHRQ*
Ga0062595_1001867241	3300004479	Soil	PEEAAMDETGMSEADKREFVDDVLLTWGEEAAQEVAERYGVDLLALKQEHGDMGPPSRH*
Ga0062595_1022214632	3300004479	Soil	MDETGMSDADKIEFVDDVLRTWGEEAAREFAERYRIDFDALKRE
Ga0062594_1017991872	3300005093	Soil	MDETGMTDADKLEFVDDVLRTWGEEAAREVAERFEVDLDALKREPDGLERQPHR*
Ga0070682_1016549462	3300005337	Corn Rhizosphere	MDETGISYADKLEFVDDVLRTWGEEAAREVAERYAVDLEALKREP
Ga0070668_1010271631	3300005347	Switchgrass Rhizosphere	MDETGMSEADKREFIDDVVLTWGEEAAQEVAERYGVDLLALKPEHGDGPPSRP*
Ga0070671_1003937921	3300005355	Switchgrass Rhizosphere	MDETGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQPQQVNIPRQSRGL*
Ga0070674_1000655023	3300005356	Miscanthus Rhizosphere	MDETGMSEADKREFVDDVLLTWGEEAAQEVAERYGVDLLALKPEHGDMGPPSRH*
Ga0070667_1009733761	3300005367	Switchgrass Rhizosphere	MDETGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNL
Ga0070663_1019977801	3300005455	Corn Rhizosphere	MDETGISYADKLEFVDDVLRTWGEEAAREVAERYAVDLEALKREPDGLDRQPRH*
Ga0070662_1011265422	3300005457	Corn Rhizosphere	MDETGMSDADKIEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQPQH*
Ga0070672_1001705441	3300005543	Miscanthus Rhizosphere	MDETGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQPQH*
Ga0068857_1002815261	3300005577	Corn Rhizosphere	MDETGMSEADKIEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQPQH*
Ga0068864_1021327721	3300005618	Switchgrass Rhizosphere	MDDTGMSHADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDE*
Ga0068851_107542562	3300005834	Corn Rhizosphere	DDTGMSHADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDE*
Ga0068858_1014479342	3300005842	Switchgrass Rhizosphere	MDETGISYADKLEFVDDGLRTWGEEAAREVAERYAVDLEALKREPDGLDRQPRH*
Ga0068858_1023085153	3300005842	Switchgrass Rhizosphere	MDETGMSEADKREFVDDVLLTWGEEAAQEVAERYGVDLLALKPEPGDMGPPSRH*
Ga0068862_1021377741	3300005844	Switchgrass Rhizosphere	MDEAGMSEADKREFVEDVLLTWGEEAAQEVAERYGVDLLALKQEHGDMGPPSRH*
Ga0068865_1000184163	3300006881	Miscanthus Rhizosphere	MDEAGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQPQH*
Ga0068865_1019333112	3300006881	Miscanthus Rhizosphere	MDETGMSEADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDE*
Ga0068865_1021864501	3300006881	Miscanthus Rhizosphere	AAMDETGMSEADKREFVDDVLLTWGEEAAQEVAERYGVDLLALKPEHGDGPPSRP*
Ga0079218_126365321	3300007004	Agricultural Soil	MDETDETGMSYADKIGFVEDVLRTWGEEAAQEIAERYAIDLQALKQEPACT
Ga0105679_106069602	3300007790	Soil	MDDTGMSHADKIGFVEDVLMTWGEEAAREFAERYDVDLDALKREGEVSDPQ*
Ga0105679_107186811	3300007790	Soil	MDETGMSYPEKVEFVDDVLRTWGEEAAQEVAERYAVDLQALKREGSDPQPQH*
Ga0105245_105213751	3300009098	Miscanthus Rhizosphere	MDETGMSEADKREFVDDVLLTWGEEAAQEVAERYGVDLLALKQEHGDMGPPSRH*
Ga0105245_112739731	3300009098	Miscanthus Rhizosphere	MDETGMSEADKIEFVDDVLRTWGEEAAQELAERYGVDLQALKHEHGDMDPPSSH*
Ga0105247_110002572	3300009101	Switchgrass Rhizosphere	MDETGMSEADKIGFVEDVLLTWDEEAAQELAERYEV
Ga0126307_100986416	3300009789	Serpentine Soil	MDDTGMSHTDKIGFVEDVLVTWGEEAAREFAERYDVDLDALKREGEVSDPQ*
Ga0126307_101564401	3300009789	Serpentine Soil	MSYADKVGFVEDVLLTWGEEAAQELAERYEVDLQVLKRGGEPSDSQSRH*
Ga0126313_111069091	3300009840	Serpentine Soil	AAMDETGMSDADKVEFVDDVLLTWGEEAAQELAERYGVDLQALKHEHGDMDPPSRP*
Ga0126313_111122262	3300009840	Serpentine Soil	MDDETGMSDADKIEFVDDVLRTWGEEAAREVAERYAVDLPALKREGSDLPSRR*
Ga0126313_112532101	3300009840	Serpentine Soil	MDDTGMTYADKAGFVEDVLLTWGEEAAQELAERYAVDLDALRREGSAPQSRH*
Ga0126305_100182357	3300010036	Serpentine Soil	MDDTGMSHADKIGFVEDVLVTWGEGAAREFAERDDVDLNALKREGEVSDLQ*
Ga0126305_101693752	3300010036	Serpentine Soil	MDDTGMTYADKVGFVEDVLLTWGEEAAQELAERYEVDLDALKREHEGSTTH*
Ga0126305_101921813	3300010036	Serpentine Soil	MDETGMSDADKREFVDDVLRIWGEEAAQEIAERFAIDLQALKQE
Ga0126305_108204761	3300010036	Serpentine Soil	MVDDTGMTYADKAGFVEDVLLTWGEEAAQELADRYAVDLGALKRDHEDSGWH*
Ga0126305_110880301	3300010036	Serpentine Soil	MDHTGMTEADKAGLIEDVLVIWGEDAAQELAERYGVKLQALEHAAATDS*
Ga0126304_101116594	3300010037	Serpentine Soil	AAMDETGMSDADKIEFVDDVLLTWGEEAAQELAERYGVDLQALKHEHGDMDPPSRP*
Ga0126304_102442822	3300010037	Serpentine Soil	MDDTGMTYADKVGFVEDVLLTWGEEAAQELAERYEADLDALKREHEGSTAH*
Ga0126304_103466151	3300010037	Serpentine Soil	DADKLEFVDDVLRTWGEEAAQEVAERYAIDLQALKREGSDPQLQH*
Ga0126304_107341601	3300010037	Serpentine Soil	MDETGMSDADKLEFVDDVLRIWGEEAAQEIAERFAI
Ga0126309_101964201	3300010039	Serpentine Soil	MDETGMSDADKMEFVDDVLRTWGEEAAQEVAEPYEVDLAVLKRPQAGSTLQPPN*
Ga0126309_109444541	3300010039	Serpentine Soil	MDNTGMTDADKAGFVEDVLLTWGEEAAQELADRYAVDLDALKRDHEGSG*
Ga0126308_103730752	3300010040	Serpentine Soil	MDETGMSDADKREFVDDVLRIWGEEAAQEIAERFAIDL
Ga0126308_105251572	3300010040	Serpentine Soil	MDDETGMSDADKIEFVDDVLRTWGEEAAQEVAERYAVDL*
Ga0126308_111578001	3300010040	Serpentine Soil	MDDTGMSHADKIGFVEDVLVTWGEEAAREFAERYDVDLDALKREGEVSDPQ*
Ga0126308_111707691	3300010040	Serpentine Soil	MDDTGMTYADMVEFVDDVLRTWGEEAAQELAERYDVDLDALRRESGLSELQQQC*
Ga0126312_108592512	3300010041	Serpentine Soil	MDETGMSDADKLEFVDDVLRTWGEEAAQEVAERYAVDLPALMREGSDPQLQH*
Ga0126312_109390641	3300010041	Serpentine Soil	MDDTGMTYADKAGFVEDVLLTWGEEAAQELAERYAVDLAALRREGSAPQSRH*
Ga0126314_104369672	3300010042	Serpentine Soil	MDDTGMTYADKAGFVEDVLLTWGEEAAQELAERYAVDLDALKGENAQA*
Ga0126314_110020522	3300010042	Serpentine Soil	MDETGMSDADKIEFVDDVLLTWGEEAAQELAERYGVDLQALKHEHGDMDPPS*
Ga0126310_102619751	3300010044	Serpentine Soil	MSYADKVGFVEDVLLTWGEEAAQELAECYEIDLPALKRGGEPSDSQSRH*
Ga0126310_103760121	3300010044	Serpentine Soil	MDETGMSEADKIEFVDDVLLTWGEEAAQELAERYGVDLLALKHKHGDMDPPS*
Ga0126310_115433031	3300010044	Serpentine Soil	NRHKEATMDDTGMSHTDKIGFVEDVLVTWGEEAAREFAERYDVDLDALKREGEVSDPQ*
Ga0126311_102151711	3300010045	Serpentine Soil	MDETGMSEADKIEFVDDVLLTWGEEAAQELAERYGVDLQALKHEHGDMDPPS*
Ga0126311_104573362	3300010045	Serpentine Soil	MDETGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRHQEGLNLQPQH*
Ga0126311_108074001	3300010045	Serpentine Soil	MDDTGMSEADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESARS*
Ga0126311_112625642	3300010045	Serpentine Soil	MDDIGMTYADKAGFVEDVLLTWGEEAAQELADRYAVDLGALKRDHEDSGWH*
Ga0127481_10979062	3300010101	Grasslands Soil	EGMDETGMSRADKIGIVKDALRTWGEEAAQELAERYAVDIQLLSENATADSQAQN*
Ga0127495_10317451	3300010115	Grasslands Soil	MDDTGMSHADKIEFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDE*
Ga0127495_10855161	3300010115	Grasslands Soil	AMDETGMSEADKIGFVEDVLLTWDEEAAQELAERYEVDLDALRREGARS*
Ga0127443_11287432	3300010125	Grasslands Soil	MDDTGMSHADKIGFVEDVLLTWGKEAAQELAERYAVDLDALKRESPDE*
Ga0126320_10564111	3300010146	Soil	AAMDETGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQPQH*
Ga0126306_101226462	3300010166	Serpentine Soil	MDETGMSDADKIEFVDDVLLTWGEEAAQELAERYGVDLQALKHEHGDMDPPSRP*
Ga0126306_103518812	3300010166	Serpentine Soil	MDDTGMTYADKVGFVEDVLLTWGEEAAQELAERYEVDLDGLKREHEGSTTH*
Ga0126306_106386432	3300010166	Serpentine Soil	MDDTGMTYADMVEFVDEVLRTWGEEAAQELAERYDVDLDALRRESGLSELQQQC*
Ga0126306_118374891	3300010166	Serpentine Soil	MMDDTGMTYADKAGFVEDVLLTWGEEAAQELADRYAVDLDALKRDHEDSGWH*
Ga0134125_106652004	3300010371	Terrestrial Soil	MDETGMSEADKREFVEDVLLTWGEEAAQEVAERYGVDLLALKQERGDAGPPSRH*
Ga0134128_124524951	3300010373	Terrestrial Soil	MDETGMSDADKIEFVDDVLRTWGEEAAREFAERYRIDFDA
Ga0134121_117009681	3300010401	Terrestrial Soil	MDDTGMSHADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDK*
Ga0105246_114257792	3300011119	Miscanthus Rhizosphere	MDETGMSEADKIGFVEDVLLTWGEEAAQELAERYAVDLDALRREDARS*
Ga0150985_1002112402	3300012212	Avena Fatua Rhizosphere	MDETGMSEADKIEFVDDVLRTWGEEAAQELAERYGVDLQALKHEHGDMDPPS*
Ga0150985_1073540931	3300012212	Avena Fatua Rhizosphere	RREATMDDTGMSHGDKIGFVEDVLLTWGEEAAQELAERYAVDLDALKREGEVSDPQ*
Ga0150985_1145697181	3300012212	Avena Fatua Rhizosphere	ADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQAQH*
Ga0150985_1147480272	3300012212	Avena Fatua Rhizosphere	MDETGMSEADKIGFVEDVLLTWDEEAAQELAERYEVDLDALRREGARS*
Ga0150985_1155442481	3300012212	Avena Fatua Rhizosphere	AMDETGMTYADKAGFVEDVLLTWGEEAAQELAERYEVDLDALRREDARS*
Ga0150985_1181694231	3300012212	Avena Fatua Rhizosphere	MDDTGMSEADKIGFVEDVLLTWGEEAAQEVAERYGVDLEALKQEHGGTAAPSRH*
Ga0150985_1213408302	3300012212	Avena Fatua Rhizosphere	MDETGMTDADKLEFVDDVLRTWGEEAAREVAERFEIDLEALKREPDGLDRQPRR*
Ga0150984_1003268461	3300012469	Avena Fatua Rhizosphere	ERYREAAMDETGMSEADKIGFVEDVLLTWDEEAAQELAERYEVDLDALRREGARS*
Ga0150984_1009698783	3300012469	Avena Fatua Rhizosphere	MDETGMSYADKLEFVDDVLRTWGEEAAREVAERFEVDLDALKHEPDGLERQPRC*
Ga0150984_1029618781	3300012469	Avena Fatua Rhizosphere	ETGMTDADKVGHVEEVLLTWGTEAAQELADRYEVKLDALERKREGSDPQRGS*
Ga0150984_1031898091	3300012469	Avena Fatua Rhizosphere	ETGMTDADKVGHVEEVLLTWGTEAAQELADRYEVKLDALEREREGSDPKRGS*
Ga0150984_1036302011	3300012469	Avena Fatua Rhizosphere	DDTGMSEADKIGLVEEALLIWGEEAAQELADRYAVDLDALKREDAPV*
Ga0150984_1053308502	3300012469	Avena Fatua Rhizosphere	MDETGMTDETGMTYADKAGFVEDVLLTWGEEAAQELAERYEVDLDALKGENAQA*
Ga0150984_1061361471	3300012469	Avena Fatua Rhizosphere	EEAAMDETGMSEADKREFVEDVLLTWGEEAAQEVAERYGVDLLALKPEPGDMGPPSRP*
Ga0150984_1063658311	3300012469	Avena Fatua Rhizosphere	MDETGMSEADKIEFVDDVLLTWGEEAAQELAERYGVDLQALKHEHGDKDPPS*
Ga0150984_1107222522	3300012469	Avena Fatua Rhizosphere	MDDTGMSEADKIGLVEDALLIWGEEAAQELADRYAVDLQALKREDAPA*
Ga0157285_103607032	3300012897	Soil	GMSEADKREFIDDVLLTWGEEAAQEVAERYGVDLLALKPEHEDAGAPSRP*
Ga0163162_103464094	3300013306	Switchgrass Rhizosphere	MDETGMSEADKREFVDDVLLTWGEEVAQEVAERYGVDLLALKQEHGDMGPPSRH*
Ga0157375_118069492	3300013308	Miscanthus Rhizosphere	MDDTGMSHADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDEQ
Ga0182008_102265282	3300014497	Rhizosphere	MDDTGMSETDKIGFVEDVLLTWGEEAAQELGERYAVDLDALKRESPDEQA*
Ga0182008_102542152	3300014497	Rhizosphere	MDETGMSDADKMEFVDDVLRTWGEEAAHEVAERYEVDLEVLKRQQEGLTLQPQH*
Ga0157379_118321971	3300014968	Switchgrass Rhizosphere	MDETGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNHQPQH*
Ga0182005_12501432	3300015265	Rhizosphere	MSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLTRQQEGLNLPPQH*
Ga0132255_1051132642	3300015374	Arabidopsis Rhizosphere	MDETGMTDADKLEFVDDVLRTWGEEAAREVAERFEVDLEALKREPDGLDCQPQH*
Ga0163161_117362302	3300017792	Switchgrass Rhizosphere	MDETGMSDADKIEFVDDVLRTWGEEAAQEVAERYAVDLKVLK
Ga0190268_103361731	3300018466	Soil	MSYADKVGFVEDVLLTWGEEAAQELAERYEVDLQALKRGGEPSDSQSRH
Ga0190267_102895161	3300019767	Soil	MDETGMSEADKVEFVDDVLRTWGEEAAQEVAERYAVD
Ga0190267_104783661	3300019767	Soil	MDETGMSYGDKLEFVDDVLRTWGEEAAREVAERFEVDLEALKREPDGLDRQLQH
Ga0207642_106201521	3300025899	Miscanthus Rhizosphere	MDETGMSEADKIGFVEDVLLTWDEEAAQELAERYEVYLDALRREGARS
Ga0207688_100684843	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MDDTGMSHADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDEQA
Ga0207688_107464621	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MDETGMSDADKIEFVDDVLRTWGEEAAREFAERYRIDFDALKRERETSAE
Ga0207688_108332301	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MDETGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQPQH
Ga0207671_113871262	3300025914	Corn Rhizosphere	MDDTGMSEADKIGLVEDALLIWSEEAAQELADRYAVDLDALKREDAPA
Ga0207657_101685662	3300025919	Corn Rhizosphere	MDETGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQRP
Ga0207687_103843723	3300025927	Miscanthus Rhizosphere	MDETGMSEADKREFVDDVLLTWGEEAAQEVAERYGVDLLALKQEHGDMGPPSRH
Ga0207687_104429711	3300025927	Miscanthus Rhizosphere	MDETGMSEADKIEFVDDVLRTWGEEAAQELAERYGV
Ga0207687_111567342	3300025927	Miscanthus Rhizosphere	MDETGMSDADKIEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLTLQPQH
Ga0207687_114865092	3300025927	Miscanthus Rhizosphere	MDETGMSDADKIEFVDDVLRTWGEEAAREFAERYRIDFD
Ga0207706_108152111	3300025933	Corn Rhizosphere	MDETGMSEADKIEFVDDVLRTWGEEAAQELAERYGVDLQALKHEHG
Ga0207704_118909302	3300025938	Miscanthus Rhizosphere	TGMSHADKIGFVEDVLLTWGEEAAQELAERYAVDLDALKRESPDE
Ga0207691_117217961	3300025940	Miscanthus Rhizosphere	MDETGMSEADKREFVEDVLLTWGEEAAQEVAERYGVDLLALKPEHGGMGPP
Ga0207689_101834512	3300025942	Miscanthus Rhizosphere	MDEAGMSDADKMEFVDDVLRTWGEEAAQEVAERYEVDLEVLKRQQEGLNLQPQH
Ga0207712_110162641	3300025961	Switchgrass Rhizosphere	DETGMSEADKREFVEDVLLTWGEEAAQEVAERYGVDLLALKPEHGGMGPPSRP
Ga0207678_102780682	3300026067	Corn Rhizosphere	MDETGISYADKLEFVDDVLRTWGEEAAREVAERYAVDLEALKREPDGLDRQPRH
Ga0207676_102086411	3300026095	Switchgrass Rhizosphere	MDETGMSYADKLEFVGDVLRTWGEEAAREVAERYAVDLEALKREPDGLDRQPRR
Ga0268265_114831222	3300028380	Switchgrass Rhizosphere	MDEAGMSEADKREFVEDVLLTWGEEAAQEVAERYGVDLLALKQEHGDMGPPSRH
Ga0334936_058005_599_775	3300034007	Biocrust	MDEAGMSYADKVEFVDDVLRTWGEEAAREVAERYAVDLQALTREGSDPQPNPGENRVC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063423

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences