Metagenome / Metatranscriptome Family F063204

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063204
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	46 residues
Representative Sequence	PETYEQDMEVLRLPFTEALNAALEGQIVHSGSVTALCRAARALKLL
Number of Associated Samples	102
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.77 %
% of genes near scaffold ends (potentially truncated)	98.46 %
% of genes from short scaffolds (< 2000 bps)	90.77 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.462 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (26.923 % of family members)
Environment Ontology (ENVO)	Unclassified (44.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.308 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.73% β-sheet: 0.00% Coil/Unstructured: 70.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF13205	Big_5	73.85
PF08281	Sigma70_r4_2	5.38
PF01061	ABC2_membrane	2.31
PF09195	Endonuc-BglII	1.54
PF00206	Lyase_1	0.77
PF00293	NUDIX	0.77
PF07676	PD40	0.77
PF00440	TetR_N	0.77
PF00005	ABC_tran	0.77
PF02785	Biotin_carb_C	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.46 %
Unclassified	root	N/A	1.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.46 %
Unclassified	root	N/A	1.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.46 %
Unclassified	root	N/A	1.54 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.23 %
Unclassified	root	N/A	1.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	54.62 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.08 %
Unclassified	root	N/A	1.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	53.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.31 %
Unclassified	root	N/A	1.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	53.08 %
Unclassified	root	N/A	1.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.77 %
Chloroflexi bacterium 13_1_20CM_4_66_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_4_66_7	0.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig180470	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300001359\|A3035W6_1022234	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300001359\|A3035W6_1344251	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300001418\|JGI20188J14859_1025262	Not Available	599	Open in IMG/M
3300002911\|JGI25390J43892_10002792	All Organisms → cellular organisms → Bacteria	3784	Open in IMG/M
3300002916\|JGI25389J43894_1046804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	735	Open in IMG/M
3300004479\|Ga0062595_100879125	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005167\|Ga0066672_10551755	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300005167\|Ga0066672_10950122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	528	Open in IMG/M
3300005174\|Ga0066680_10235891	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300005406\|Ga0070703_10487639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	552	Open in IMG/M
3300005435\|Ga0070714_101990186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	567	Open in IMG/M
3300005445\|Ga0070708_100256086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1645	Open in IMG/M
3300005467\|Ga0070706_100682190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	953	Open in IMG/M
3300005467\|Ga0070706_101105906	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300005468\|Ga0070707_100183135	All Organisms → cellular organisms → Bacteria	2042	Open in IMG/M
3300005468\|Ga0070707_100688408	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300005471\|Ga0070698_101748378	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300005518\|Ga0070699_100410059	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300005536\|Ga0070697_100093367	All Organisms → cellular organisms → Bacteria	2491	Open in IMG/M
3300005537\|Ga0070730_10088179	All Organisms → cellular organisms → Bacteria	2164	Open in IMG/M
3300005540\|Ga0066697_10576221	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300005542\|Ga0070732_10737447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	600	Open in IMG/M
3300005552\|Ga0066701_10436599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	812	Open in IMG/M
3300005554\|Ga0066661_10287634	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300005555\|Ga0066692_10368931	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300005555\|Ga0066692_10684394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	637	Open in IMG/M
3300005555\|Ga0066692_10884884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	547	Open in IMG/M
3300005558\|Ga0066698_10159775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1526	Open in IMG/M
3300005558\|Ga0066698_11063963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	512	Open in IMG/M
3300005566\|Ga0066693_10098646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1051	Open in IMG/M
3300005566\|Ga0066693_10328329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	614	Open in IMG/M
3300005568\|Ga0066703_10125580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1529	Open in IMG/M
3300005568\|Ga0066703_10197826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1218	Open in IMG/M
3300005569\|Ga0066705_10943128	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005598\|Ga0066706_10386304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1113	Open in IMG/M
3300006031\|Ga0066651_10532876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	622	Open in IMG/M
3300006050\|Ga0075028_100719590	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300006794\|Ga0066658_10343004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	798	Open in IMG/M
3300006796\|Ga0066665_10372860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1171	Open in IMG/M
3300006797\|Ga0066659_10109670	All Organisms → cellular organisms → Bacteria	1894	Open in IMG/M
3300006797\|Ga0066659_11491892	All Organisms → cellular organisms → Bacteria → Terrabacteria group	566	Open in IMG/M
3300006914\|Ga0075436_101417049	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300007258\|Ga0099793_10053118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1793	Open in IMG/M
3300007265\|Ga0099794_10741240	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300009012\|Ga0066710_101592554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1001	Open in IMG/M
3300009088\|Ga0099830_10294594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1294	Open in IMG/M
3300009088\|Ga0099830_11165218	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300009088\|Ga0099830_11780151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	514	Open in IMG/M
3300009089\|Ga0099828_10471893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1132	Open in IMG/M
3300009089\|Ga0099828_11329816	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300009090\|Ga0099827_10813644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	809	Open in IMG/M
3300009137\|Ga0066709_104177053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	526	Open in IMG/M
3300010104\|Ga0127446_1050251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	592	Open in IMG/M
3300010114\|Ga0127460_1109655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1306	Open in IMG/M
3300010120\|Ga0127451_1110055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	547	Open in IMG/M
3300010130\|Ga0127493_1084239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1041	Open in IMG/M
3300010132\|Ga0127455_1121501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	772	Open in IMG/M
3300010361\|Ga0126378_13056952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	533	Open in IMG/M
3300010366\|Ga0126379_13185795	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300011269\|Ga0137392_10065329	All Organisms → cellular organisms → Bacteria	2783	Open in IMG/M
3300011269\|Ga0137392_11377585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	564	Open in IMG/M
3300011271\|Ga0137393_10694754	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300011271\|Ga0137393_10958719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	729	Open in IMG/M
3300011271\|Ga0137393_11593288	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300011999\|Ga0120148_1032657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1109	Open in IMG/M
3300012010\|Ga0120118_1119495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	635	Open in IMG/M
3300012014\|Ga0120159_1203681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	526	Open in IMG/M
3300012096\|Ga0137389_10405488	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300012096\|Ga0137389_11812748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_4_66_7	506	Open in IMG/M
3300012189\|Ga0137388_10576359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1046	Open in IMG/M
3300012199\|Ga0137383_10163912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1628	Open in IMG/M
3300012199\|Ga0137383_10898930	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300012200\|Ga0137382_10266670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1189	Open in IMG/M
3300012202\|Ga0137363_10278104	All Organisms → cellular organisms → Bacteria	1368	Open in IMG/M
3300012202\|Ga0137363_11507685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	563	Open in IMG/M
3300012209\|Ga0137379_11352355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	617	Open in IMG/M
3300012211\|Ga0137377_10073868	All Organisms → cellular organisms → Bacteria	3196	Open in IMG/M
3300012349\|Ga0137387_10371068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1037	Open in IMG/M
3300012353\|Ga0137367_10275401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1207	Open in IMG/M
3300012357\|Ga0137384_10372329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1182	Open in IMG/M
3300012363\|Ga0137390_10643856	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300012363\|Ga0137390_11979426	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300012379\|Ga0134058_1058581	All Organisms → cellular organisms → Bacteria	2784	Open in IMG/M
3300012390\|Ga0134054_1026530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	865	Open in IMG/M
3300012390\|Ga0134054_1055223	All Organisms → cellular organisms → Bacteria	2937	Open in IMG/M
3300012395\|Ga0134044_1117018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2505	Open in IMG/M
3300012398\|Ga0134051_1202128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3036	Open in IMG/M
3300012402\|Ga0134059_1360919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1511	Open in IMG/M
3300012405\|Ga0134041_1031425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	533	Open in IMG/M
3300012972\|Ga0134077_10510817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	533	Open in IMG/M
3300014052\|Ga0120109_1037896	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300014150\|Ga0134081_10211389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	663	Open in IMG/M
3300014154\|Ga0134075_10339432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	657	Open in IMG/M
3300015164\|Ga0167652_1090054	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300017930\|Ga0187825_10200341	Not Available	719	Open in IMG/M
3300018433\|Ga0066667_11580718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	583	Open in IMG/M
3300018433\|Ga0066667_12026712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
3300018482\|Ga0066669_10527342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1026	Open in IMG/M
3300018482\|Ga0066669_12309229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	513	Open in IMG/M
3300020002\|Ga0193730_1062432	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300021046\|Ga0215015_10479382	All Organisms → cellular organisms → Bacteria → Terrabacteria group	882	Open in IMG/M
3300021046\|Ga0215015_10695694	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300021046\|Ga0215015_10804550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	690	Open in IMG/M
3300021432\|Ga0210384_11644917	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300025457\|Ga0208850_1081904	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300025922\|Ga0207646_10000247	All Organisms → cellular organisms → Bacteria	73874	Open in IMG/M
3300025922\|Ga0207646_10219408	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300026306\|Ga0209468_1070233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1175	Open in IMG/M
3300026308\|Ga0209265_1121443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	659	Open in IMG/M
3300026317\|Ga0209154_1146133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	985	Open in IMG/M
3300026318\|Ga0209471_1259786	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300026322\|Ga0209687_1033718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1666	Open in IMG/M
3300026324\|Ga0209470_1310569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	579	Open in IMG/M
3300026324\|Ga0209470_1312146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	577	Open in IMG/M
3300026326\|Ga0209801_1116877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1145	Open in IMG/M
3300026330\|Ga0209473_1150163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	944	Open in IMG/M
3300026334\|Ga0209377_1028242	All Organisms → cellular organisms → Bacteria	2724	Open in IMG/M
3300026334\|Ga0209377_1189327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	703	Open in IMG/M
3300026480\|Ga0257177_1018293	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300026528\|Ga0209378_1266012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	545	Open in IMG/M
3300026552\|Ga0209577_10476158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	850	Open in IMG/M
3300027633\|Ga0208988_1153984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	551	Open in IMG/M
3300027651\|Ga0209217_1045690	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300027842\|Ga0209580_10146260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1161	Open in IMG/M
3300027862\|Ga0209701_10089522	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300027915\|Ga0209069_10848982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	549	Open in IMG/M
3300031954\|Ga0306926_11207121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	888	Open in IMG/M
3300031962\|Ga0307479_10992364	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300032180\|Ga0307471_100375689	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.23%
Host-Associated	Host-Associated	0.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.92%
Aquatic	Environmental → Aquatic	2.31%
Plants	Host-Associated → Plants	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.92%
Sediment	Environmental → Aquatic → Sediment	1.54%
Freshwater	Environmental → Aquatic → Freshwater	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.15%
Loam	Environmental → Terrestrial → Soil → Loam	10.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.23%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.15%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.08%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.54%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.77%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
3300001359	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-35cm)- 6 month illumina	Environmental	Open in IMG/M
3300001418	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010104	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010114	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010120	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010130	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011999	Permafrost microbial communities from Nunavut, Canada - A28_65cm_6M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012395	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_01823650	2124908032	Soil	MEVLRIPFKEALEAALGGTIVHSGSVTALCRAARALKV
A3035W6_10222342	3300001359	Permafrost	DMEVRRLPFKAALHAALDGAIAHSGSVTALVRAAHTLKLL*
A3035W6_13442512	3300001359	Permafrost	DMEVRRLPFKEALQAALDGAIAHSGSVTALVRAAHALKLL*
JGI20188J14859_10252621	3300001418	Arctic Peat Soil	MPFADALEAALGGTIVHSGSVTALCRASRTLKLT*
JGI25390J43892_100027921	3300002911	Grasslands Soil	TYEQDMEVLRLPFAEALNAALEGEIVHSGSVTALCRAAQALKLL*
JGI25389J43894_10468042	3300002916	Grasslands Soil	DMEVLRLPFAEAWSAALDGQIIHSGSVTALCRAAHALKLL*
Ga0062595_1008791251	3300004479	Soil	RNPETYEQDMEVLRLPFTEAFEAALQGAIAHSGSVTALTRAARALKIL*
Ga0066672_105517551	3300005167	Soil	RSPETYEQDMEVLRIPFSEALNAALEGEIVHSGSVTALCRAARALKLV*
Ga0066672_109501221	3300005167	Soil	RSPETYEQDMEVLRVPFIEALDAALEGQIVHSGSVTALCRAARGLKLI*
Ga0066680_102358912	3300005174	Soil	ASERNPESYEQDMEVMRLPFVDALQSALDGGIAHSGSVTSLVRAARALKLI*
Ga0070703_104876392	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	DRNPESYEQDMEVLRMPFADAFEAALDGTIAHSGSVTALCRAARTLKLV*
Ga0070714_1019901862	3300005435	Agricultural Soil	YEQDMEVLRLPFAEAFEAALGGQIVHSGSVTALSRTARALKLI*
Ga0070708_1002560862	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AEGLTESKRTPETYEQDMEVLRLPFTEALHAALEGEIVHSGSVTALCRAARALKIL*
Ga0070706_1006821902	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	YEQDMEVLRLPFTEALEAAVSGEIVHAGSVIALIRAARKLTLL*
Ga0070706_1011059061	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MEVLRLPFVEALHAALDGGIAHSGSVTALVRAARALNLL*
Ga0070707_1001831354	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	ITESARAPETYEQDMEVLRLPFTEALNAALEGQIVHSGSITALCRAARALKLI*
Ga0070707_1006884081	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	ERNPETYEQDMEVLRLPFTDALQAALEGDIAHSGSITALTRAARALKLL*
Ga0070698_1017483781	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	DMEVLRLPLVEALEAALDGGIAHSGSVTALVRAARALDLL*
Ga0070699_1004100592	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TESARAPEAYEQDMEVLRLPFTEALNAALDGQILHSGSITALCRAARTLKLL*
Ga0070697_1000933673	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	EAYEQDMEVLRLPFVDAWHAALDGQIIHSGSVTALCRAARALKLLRPR*
Ga0070730_100881792	3300005537	Surface Soil	EVLRLPFAEALEAALSGAIVHSGSVTALCRAARMLKVI*
Ga0066697_105762211	3300005540	Soil	DMEVMRLPLQEALEAALSGDIGHSTSVTSLARAARALKLI*
Ga0070732_107374472	3300005542	Surface Soil	NPETYEQDMEVLRLSFADALDAALEGEIVHSGSITALCRAARALKLL*
Ga0066701_104365992	3300005552	Soil	RLTESERSPETYEQDMEVLRIPFSEALNAALEGEIVHSGSVTALCRAARALSLL*
Ga0066661_102876341	3300005554	Soil	ERSPETYEQDMEVLRLPFTEALNAALEGDIVHSGSVTALCRAARALKLL*
Ga0066692_103689311	3300005555	Soil	YEQDMEVMRLPLQEALEAALSGDIGHSTSVTSLARAARALKLI*
Ga0066692_106843942	3300005555	Soil	SPETYEQDMEVLRLPLGEALNAALEGQIVHSGSVTALCRAARALKLL*
Ga0066692_108848843	3300005555	Soil	GLTEAERSPETYEQDMEVLRVPFIEALDAALEGQIVHSGSVTALCRAARGLKLI*
Ga0066698_101597751	3300005558	Soil	NPETYEQDMEVLRLPFTDALQAALEGQIVHSGSVTALCRAAHALELP*
Ga0066698_110639632	3300005558	Soil	RQPETYEQDMEVLRIPLREAVDAALNGEIEHSGSVTSLVRAAVALNLIKF*
Ga0066693_100986461	3300005566	Soil	MRLSLLDALNAALDGEIVHSGSVTALARAAKALRLV*
Ga0066693_103283291	3300005566	Soil	PETYEQDMEVLRLPFAEAWSAALDGQIIHSGSVTALCRAAHALKLL*
Ga0066703_101255801	3300005568	Soil	YEQDMEVLRLPFTEALNAALEGQIVHSGSVTALCRAARALKLL*
Ga0066703_101978262	3300005568	Soil	YEQDMEVLRVPFIEALDAALEGQIVHSGSVTALCRAARGLKLI*
Ga0066705_109431281	3300005569	Soil	RSPETYEQDMEVLRLPLREAIEAALAGEIAHSGSVTSLLRAASALGLISLR*
Ga0066706_103863042	3300005598	Soil	SKQNREAYEQDMEVMRLPLQEALEAALSGDIGHSTSVTSLARAARALKLI*
Ga0066651_105328762	3300006031	Soil	SARSPETYEQDMEVLRLPFTEALNAALEGQIVHSGSVTALCRAARAMGLL*
Ga0075028_1007195902	3300006050	Watersheds	ERNPEAYEQDMDMLRLPFGDALQAALDGEIAHSGSVTALARAARVLKV*
Ga0066658_103430041	3300006794	Soil	EQDMEVLRIPFSEALNAALEGEIVHSGSVTALCRAARALKLI*
Ga0066665_103728601	3300006796	Soil	TYEQDMEVLRVPFIEALDAALEGQIVHSGSVTALCRAARGLKLI*
Ga0066659_101096701	3300006797	Soil	PETYEQDMEVLRIPFSEALNAALEGEIVHSGSVTALCRAARALKLV*
Ga0066659_114918921	3300006797	Soil	PETYEQDMEVLRIPFSEALNAALEGEIVHSGSVTALCRAARSLKLV*
Ga0075436_1014170491	3300006914	Populus Rhizosphere	PEAYEQDMEVLRLPFAEALNAALEGQIVHSGSITALCRAARALKLL*
Ga0099793_100531181	3300007258	Vadose Zone Soil	PETYEQDMVVLRLPFTEALDAALEGQIVHSGSVTALCRVGRALKVL*
Ga0099794_107412401	3300007265	Vadose Zone Soil	DMEVLRLPFADALQAALDGEITHSGSVTALARAARALKLL*
Ga0066710_1015925541	3300009012	Grasslands Soil	EAARQPETYEQDMEVLRIPLREAVDAALNSEIEHSGSVTSLVRAAVALNLIKF
Ga0099830_102945942	3300009088	Vadose Zone Soil	AYEQDMEVMRLPLTEALEAALSGDIGHSTSVTSLARAARALKLI*
Ga0099830_111652181	3300009088	Vadose Zone Soil	ERHPETYEQDMEVLRLPFTDALQAALDGEITHSGSVTALARAARALKLL*
Ga0099830_117801512	3300009088	Vadose Zone Soil	EQDMVVLRLPFTEALDAALEGQIVHSGSVTALCRAARALEVL*
Ga0099828_104718931	3300009089	Vadose Zone Soil	PERYEQDMEVLRTPFAEALEAAISGEIVHAGSVIALIRAARALKVL*
Ga0099828_113298162	3300009089	Vadose Zone Soil	ETYEQDMEVLRLPFTDALQAALDGEITHSGSVTALARAARALKLL*
Ga0099827_108136441	3300009090	Vadose Zone Soil	EQDMEVLRLPFHEALGAALDGRTVHSGSVTALCRATRALELL*
Ga0066709_1041770531	3300009137	Grasslands Soil	TESKQNREAYEQDMEVMRLPLQEALEAALSGDIGHSTSVTSLARAARALKLI*
Ga0127446_10502511	3300010104	Grasslands Soil	QDMEVLRLPFTDALQAALEGQIVHSGSVTALCRAAHALELP*
Ga0127460_11096552	3300010114	Grasslands Soil	EELTESNRNPERYEQDMEVMRLPFRDALDAALEGEIMHSGSITALCRAARALTIL*
Ga0127451_11100552	3300010120	Grasslands Soil	LRLPFTGALQAALEGQIVHSGSVTALCRAAHALELP*
Ga0127493_10842391	3300010130	Grasslands Soil	MEVMRLPFRDALDAALEGEIMHSGSITALCRAARALTIL*
Ga0127455_11215011	3300010132	Grasslands Soil	ERYEQDMEVMRLPFRDALDAALEGEIMHSGSITALCRAARALTIL*
Ga0126378_130569522	3300010361	Tropical Forest Soil	LTEAARSPEAYEQDMEMLRLPFSEALDEALWGGIVHSGSVTALCRAARALKVF*
Ga0126379_131857951	3300010366	Tropical Forest Soil	AYEQDMDVMRLPFVDALNAALSGEIVHSGSVTALCRAARALKVI*
Ga0137392_100653291	3300011269	Vadose Zone Soil	EQDMEVRRLPFKEALQAALDGAIAHSGSVTALVRAAHALKLL*
Ga0137392_113775851	3300011269	Vadose Zone Soil	LRLPFTEALDAALEGQIVHSGSVTALCRAARALKVL*
Ga0137393_106947542	3300011271	Vadose Zone Soil	RLPFAEALHAALDGGIAHSGSVTALVRAARALNLL*
Ga0137393_109587191	3300011271	Vadose Zone Soil	ERNPETYEQDMEVLRLPFKEAFEAALSGAIAHSGSVTALSRSARALKLI*
Ga0137393_115932881	3300011271	Vadose Zone Soil	DMEVLRLPFVEALHAALDGGIAHSGSVTALVRAARALNLL*
Ga0120148_10326571	3300011999	Permafrost	DMEVLRMPFAEALEAALDGTIVHSGSVTALCRAARTLKVL*
Ga0120118_11194951	3300012010	Permafrost	SITQAERNPETYEQDMEVLRLTFTDALEAALSGQIAHSGSVTALSRAARALKLL*
Ga0120159_12036812	3300012014	Permafrost	EQDMEMLRLPFAEAFEAALSGQIAHSGSVPALSRSARALKLI*
Ga0137389_104054881	3300012096	Vadose Zone Soil	TSERKPETYEQDMEVLRLPFVEALQAALDGDIAHSGSVTCLVRAARALKVV*
Ga0137389_118127481	3300012096	Vadose Zone Soil	ESARSPETYEQDMEVMRVPFGEALNAALEGDIVHSGSVTALCRAARALKLI*
Ga0137388_105763592	3300012189	Vadose Zone Soil	RLPFAEALNAALEGQIVHSGSITALCRAARALRLL*
Ga0137383_101639122	3300012199	Vadose Zone Soil	AKQNLEPYEQDMDVMRLPLTEALEAALTGDIGHSTSVTSLARAARALKLI*
Ga0137383_108989301	3300012199	Vadose Zone Soil	RLPFVDALQSALDGGIAHSGSVTSLVRAARALKLI*
Ga0137382_102666702	3300012200	Vadose Zone Soil	YEQDMEVLRLPFGEALHAALEGQIVHSGSVTALCRAARALKLL*
Ga0137363_102781041	3300012202	Vadose Zone Soil	QDMEVLRLPFVEALHAALDGGIAHSGSVTALVRAARALNLL*
Ga0137363_115076852	3300012202	Vadose Zone Soil	RLPFSEALSAALEGQIVHSGSVTALCRAARALKLI*
Ga0137379_113523552	3300012209	Vadose Zone Soil	VLRLPFTDALQAALQGQIVHSGSVTALCRAAHALEVF*
Ga0137377_100738684	3300012211	Vadose Zone Soil	ESARNPETYEQDMEVLRLPFTDALQAALEGQIVHSGSVTALCRAAHALELP*
Ga0137387_103710681	3300012349	Vadose Zone Soil	QGITESARAPEAYEQDMEVLRLPMLEALRAALEGEIEHSGSVTSLARAAMALNLIQI*
Ga0137367_102754012	3300012353	Vadose Zone Soil	LTETARSPETYEQDMEVLRLPFTEAVNAALEGQIVHSGSVTALCRAARALGLL*
Ga0137384_103723292	3300012357	Vadose Zone Soil	QNREAYEQDMEVMRLPLQEALEAAFSGDIGHSTSVTSLARAARALRLI*
Ga0137390_106438562	3300012363	Vadose Zone Soil	SDRNPETYEQDMEVRRLPFKAALQAALDGAIAHSGSVTALVRAAHALKLL*
Ga0137390_119794261	3300012363	Vadose Zone Soil	RNPETYEQDMEVRRLPFKEALQAALDGAIAHSGSVTALVRAAHALKLL*
Ga0134058_10585811	3300012379	Grasslands Soil	ETYEQDMEVLRLPFTDALQAALEGQIVHSGSVTALCRAAHALELP*
Ga0134054_10265302	3300012390	Grasslands Soil	RSPERYEQDMEVMRLPFREALDAALEGEIMHSGSITALCRAARALTIL*
Ga0134054_10552233	3300012390	Grasslands Soil	PETYEQDMEVLRLPFTDALQAALEGQIVHSGSVTALCRAAHALELP*
Ga0134044_11170183	3300012395	Grasslands Soil	LRLPFTEALNAALEGQIVHSGSVTALCRAARALKLL*
Ga0134051_12021281	3300012398	Grasslands Soil	QDMEVLRLPLTDALQAALEGQIVHSGSVTALCRAAHALELP*
Ga0134059_13609191	3300012402	Grasslands Soil	MRLPFRDALDAALAGEIMHSGSITALCRAARALTIL*
Ga0134041_10314251	3300012405	Grasslands Soil	LTESAPNPETYEQDMEVLRLPFTDALQAALEGQIVHSGSVTALCRAAHALELP*
Ga0134077_105108171	3300012972	Grasslands Soil	SPERYEQDMEVMRLPFREALDAALEGEIMHSGSITALCRAARALTIL*
Ga0120109_10378962	3300014052	Permafrost	MEVLRMPFSEALEAALDGTIAHSGSVTALCRAARRLKLI*
Ga0134081_102113891	3300014150	Grasslands Soil	PETYEQDMEVLRLPFTEALNAALEGQIVHSGSVTALCRAARALKLL*
Ga0134075_103394321	3300014154	Grasslands Soil	DMEVMRLPFREALDAALEGEIMHSGSITALCRAARALTIL*
Ga0167652_10900541	3300015164	Glacier Forefield Soil	DRHPEAYEQDMEVVRLPFAEALEAALDGTIAHSGSVTALCRAARTLKLV*
Ga0187825_102003412	3300017930	Freshwater Sediment	ARMPLQDAVAAALDGSIAHATSVTALLRAARALKLI
Ga0066667_115807182	3300018433	Grasslands Soil	AEGLTESARNPETYEQDMEVLRLPFTHALQAALEGQIVHSGSVTALCRAAHALELP
Ga0066667_120267122	3300018433	Grasslands Soil	AEGLTESKRSPETYEQDMEVLRLPFGEALHAALEGQIVHSGSVTALSRAARALKLL
Ga0066669_105273421	3300018482	Grasslands Soil	KPEKYEQDMEVLRLPFREALDAALDGQIVHSGSVTALCRAARALRLS
Ga0066669_123092292	3300018482	Grasslands Soil	EVLRLPFAEALNAALEGEIVHSGSVTALCRAARALKLL
Ga0193730_10624321	3300020002	Soil	TQSDRNPESYEQDMEVLRMPFADALEAALDGTIAHSGSVTALCRAARTLDLV
Ga0215015_104793821	3300021046	Soil	MEVLRLPFVDAFNAALEGQIVHSGSVTALSRAARALKLV
Ga0215015_106956942	3300021046	Soil	MCIRDSTASDRNPETYEQDMEVRRLPFKAALQAALDGAIAHSGSVTALVRAAHALKVL
Ga0215015_108045501	3300021046	Soil	EQDMEVLRLPFKEAFEAAMTGEIAHSGSVTALSRTARALKLI
Ga0210384_116449171	3300021432	Soil	PESYEQDMEVLRLPFQDALEAAMSGEIAHSGSVTALSRTARALKLI
Ga0208850_10819042	3300025457	Arctic Peat Soil	NLETYEQDMEMLRLPFIEAFEAALGGQIAHSGSVTALTRAGRFLKLI
Ga0207646_100002471	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ESITESARAPETYEQDMEVLRLPFTEALNAALEGQIVHSGSITALCRAARALKLL
Ga0207646_102194083	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ESITESARAPETYEQDMEVLRLPFTEALNAALEGQIVHSGSITALCRAARALKLI
Ga0209468_10702331	3300026306	Soil	ESLTEAARSPETYEQDMEVLRLPFTEALNAALEGQIVHSGSVTALCRAARALKLL
Ga0209265_11214432	3300026308	Soil	RIPFSEALNAALEGEIVHSGSVTALCRAARALKLI
Ga0209154_11461331	3300026317	Soil	QDMEVLRVPFIEALDAALEGQIVHSGSVTALCRAARGLKLI
Ga0209471_12597861	3300026318	Soil	VLRLPFTDALQAALEGGIAHSGSITALVRAARALKLL
Ga0209687_10337181	3300026322	Soil	DMEVLRLPFTEALNAALEGQIVHSGSVTALCRAARALKLV
Ga0209470_13105691	3300026324	Soil	AYEQDMEVMRLPLQEALEAALSGDIGHSTSVTSLARAARALKLI
Ga0209470_13121462	3300026324	Soil	YEQDMEVMRLPLQEALEAALSGDIGHSTSVTSLARAARALRLI
Ga0209801_11168772	3300026326	Soil	EDLTEAARSPETYEQDMEVLRLPFDQALSAALEGQIVHSGSVTAVCRAARALKIL
Ga0209473_11501631	3300026330	Soil	LTESARAPETYEQDMEVLRLPFTEALNAALEGQIVHSGSVTALCRAARALKLV
Ga0209377_10282423	3300026334	Soil	ETYEQDMEVLRLPFVEALHAALDGGIAHSGSVTALVRAARALNLL
Ga0209377_11893272	3300026334	Soil	EVMRLPFTEALNAALEGEIVHSGSVTALCRAARALSLL
Ga0257177_10182931	3300026480	Soil	DMEVLRLPFAEALHAALDGGIAHSGSVTALVRAARALNLL
Ga0209378_12660121	3300026528	Soil	EVMRLPLQEALEAALSGDIGHSTSVTSLARAARALKLI
Ga0209577_104761582	3300026552	Soil	AEELEESERSPETYEQDMEMLRLPFPEAWSAALDGQIVHSGSVTALCRAARALKLL
Ga0208988_11539842	3300027633	Forest Soil	EVLRLSFAEAFDAALDGQIVHSGSVTALSRAARALKLI
Ga0209217_10456901	3300027651	Forest Soil	SPETYEQDMEVLRLPFTDALQAALEGDIAHSGSITALARAARALKLL
Ga0209580_101462601	3300027842	Surface Soil	AERSPETYEQDMEVLRLPFAEAFQAAMQGGIAHSGSVTALTRAARALKLL
Ga0209701_100895221	3300027862	Vadose Zone Soil	TGSDRNPETYEQDMEVRRLPFKEALQAALDGAIAHSGSVTALVRAAHALKLL
Ga0209069_108489822	3300027915	Watersheds	ESERHPETYEQDMEVLRLPFGEALQAALDGQIVHAGSVTALTRAARALKLL
Ga0306926_112071212	3300031954	Soil	ESARSPETYEQDMEVLRLSFRDALEAALDGQIMHSGSVTALCRAARSLRLI
Ga0307479_109923641	3300031962	Hardwood Forest Soil	DRNPETYEQDMEVLRLPFAEALHAALDGGIAHSGSVTALVRAARALNLL
Ga0307471_1003756892	3300032180	Hardwood Forest Soil	RERSPETYEQDMEMRRLPFADALKAALDGDIAHSGSITALMRAAHALKLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063204

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences