Metagenome Family F063058

Basic Information
Family ID	F063058
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	44 residues
Representative Sequence	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGTQVTPVLDGTR
Number of Associated Samples	99
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.77 %
% of genes near scaffold ends (potentially truncated)	35.38 %
% of genes from short scaffolds (< 2000 bps)	82.31 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (56.923 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (19.231 % of family members)
Environment Ontology (ENVO)	Unclassified (36.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.769 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. 1ICCgaii200_07061482 2JGI11643J12802_122710221 3JGI11615J12901_111444392 4JGIcombinedJ43975_101029071 5soilL2_100578022 6soilH2_100619491 7Ga0062593_1001183982 8Ga0062593_1004872601 9Ga0062593_1005760762 10Ga0062593_1007858852 11Ga0062593_1008003392 12Ga0062593_1010235191 13Ga0063356_1028054951 14Ga0062595_1012687721 15Ga0062592_1023498021 16Ga0062591_1003682221 17Ga0070658_100922641 18Ga0070658_106275642 19Ga0070683_1014757171 20Ga0068869_1007982121 21Ga0070660_1013472911 22Ga0070689_1005272821 23Ga0070692_101140162 24Ga0070671_1001260291 25Ga0070671_1008241262 26Ga0070673_1000847263 27Ga0070703_104275492 28Ga0070678_1018672781 29Ga0070698_1006292091 30Ga0073909_100597082 31Ga0070665_1000418363 32Ga0070665_1025078032 33Ga0068857_1005694792 34Ga0068852_1027190662 35Ga0068870_109363902 36Ga0082029_14125132 37Ga0082029_16693353 38Ga0097621_1009305241 39Ga0075428_1000406413 40Ga0075428_1001000422 41Ga0075428_1003399722 42Ga0075428_1011582652 43Ga0075428_1012640691 44Ga0075421_1000204816 45Ga0075421_1000221464 46Ga0075421_1001271442 47Ga0075421_1018743461 48Ga0075430_1000013089 49Ga0075430_1006761731 50Ga0075431_1004985561 51Ga0075434_1011412902 52Ga0079217_101538312 53Ga0079217_102815902 54Ga0079217_110516142 55Ga0075429_1019855802 56Ga0079215_100369912 57Ga0079219_104666541 58Ga0079218_119931242 59Ga0075418_113728272 60Ga0111538_134796382 61Ga0126314_104179571 62Ga0126310_104442171 63Ga0126311_117391581 64Ga0126306_101194101 65Ga0157352_10793731 66Ga0157301_104472321 67Ga0126369_105797762 68Ga0157370_121222571 69Ga0157369_109917752 70Ga0182007_100285092 71Ga0132258_100126388 72Ga0132257_1004133341 73Ga0132255_1046897371 74Ga0163161_108473022 75Ga0190270_104724192 76Ga0190274_100825291 77Ga0190264_114507841 78Ga0190264_114609401 79Ga0182009_107867681 80Ga0207656_101432132 81Ga0207642_100930382 82Ga0207642_109769932 83Ga0207647_100334973 84Ga0207643_100120733 85Ga0207643_111301601 86Ga0207657_100305204 87Ga0207649_102035332 88Ga0207650_106419102 89Ga0207644_108879062 90Ga0207670_105113872 91Ga0207669_109838652 92Ga0207689_108477221 93Ga0207661_113138071 94Ga0207668_113564882 95Ga0207641_100282693 96Ga0207641_109413632 97Ga0207641_111162242 98Ga0207674_113467082 99Ga0207683_101488393 100Ga0209818_11028621 101Ga0209485_10121373 102Ga0209461_100946662 103Ga0209481_102589681 104Ga0209481_102985581 105Ga0209486_104961692 106Ga0209486_105854001 107Ga0207428_102986501 108Ga0207428_111772042 109Ga0207428_112788272 110Ga0209382_100087479 111Ga0209382_101201273 112Ga0209382_102669013 113Ga0209382_107996952 114Ga0268266_100629642 115Ga0247822_116285721 116Ga0310888_100277553 117Ga0307408_1020921011 118Ga0307405_103119792 119Ga0255338_1000107168 120Ga0310893_101683912 121Ga0307407_107476252 122Ga0307412_109544532 123Ga0310885_102862082 124Ga0307409_1008023562 125Ga0310903_101078671 126Ga0310906_100743922 127Ga0310899_100990142 128Ga0308173_118383911 129Ga0310810_103126622 130Ga0364925_0085528_541_675
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. 1ICCgaii200_07061482 2Ga0070703_104275492 3Ga0075428_1011582652 4Ga0111538_134796382 5Ga0126314_104179571 6Ga0207641_111162242 7Ga0255338_1000107168 8Ga0310893_101683912
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44 1Ga0062593_1008003392 2soilL2_100578022 3Ga0062593_1005760762 4Ga0062591_1003682221 5Ga0070660_1013472911 6Ga0082029_16693353 7Ga0097621_1009305241 8Ga0075428_1000406413 9Ga0075434_1011412902 10Ga0079217_101538312 11Ga0075418_113728272 12Ga0126314_104179571 13Ga0157301_104472321 14Ga0157369_109917752 15Ga0190264_114507841 16Ga0190264_114609401 17Ga0255338_1000107168 18Ga0310903_101078671 19Ga0310810_103126622
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.89% β-sheet: 0.00% Coil/Unstructured: 61.11%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF02824	TGS	30.00
PF04972	BON	27.69
PF07973	tRNA_SAD	14.62
PF00133	tRNA-synt_1	6.15
PF13620	CarboxypepD_reg	0.77
PF13443	HTH_26	0.77
PF00587	tRNA-synt_2b	0.77
PF10458	Val_tRNA-synt_C	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	6.15
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	6.15
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	6.15
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	6.15

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.92 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.92 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.92 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	53.85 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	53.85 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	17.69 %
Unclassified	root	N/A	43.08 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	3.85 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	17.69 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	17.69 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	0.77 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	10.00 %
Unclassified	root	N/A	43.08 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	10.00 %
Unclassified	root	N/A	43.08 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	0.77 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300031825\|Ga0255338_1000107	All Organisms → cellular organisms → Bacteria	378180	Open in IMG/M
2228664021\|ICCgaii200_c0706148	Not Available	612	Open in IMG/M
3300000890\|JGI11643J12802_12271022	Not Available	595	Open in IMG/M
3300000953\|JGI11615J12901_11144439	Not Available	618	Open in IMG/M
3300002899\|JGIcombinedJ43975_10102907	Not Available	524	Open in IMG/M
3300003319\|soilL2_10057802	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2310	Open in IMG/M
3300003324\|soilH2_10061949	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1386	Open in IMG/M
3300004114\|Ga0062593_100118398	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1922	Open in IMG/M
3300004114\|Ga0062593_100487260	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1138	Open in IMG/M
3300004114\|Ga0062593_100576076	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1066	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	44.62%
Host-Associated	Host-Associated	55.38%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	55.38%
Terrestrial	Environmental → Terrestrial	44.62%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.77%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.92%
Roots	Host-Associated → Plants → Roots	0.77%
Soil	Environmental → Terrestrial → Soil	43.85%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.08%
Loam	Environmental → Terrestrial → Soil → Loam	5.38%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.77%
Sand	Environmental → Terrestrial → Soil → Sand	0.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.54%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.31%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	16.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.31%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.54%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.77%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.31%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	19.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.77%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.54%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.77%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.77%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07061482	2228664021	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRFGTQVTPLLDGTR
JGI11643J12802_122710221	3300000890	Soil	PPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
JGI11615J12901_111444392	3300000953	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLILYFRYGAQVTPLLNGTR*
JGIcombinedJ43975_101029071	3300002899	Soil	VSYPMPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
soilL2_100578022	3300003319	Sugarcane Root And Bulk Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGAQVTPLLNSTR*
soilH2_100619491	3300003324	Sugarcane Root And Bulk Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLILYFRYGAQVTPLLDGTR*
Ga0062593_1001183982	3300004114	Soil	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
Ga0062593_1004872601	3300004114	Soil	MAPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0062593_1005760762	3300004114	Soil	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR*
Ga0062593_1007858852	3300004114	Soil	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR*
Ga0062593_1008003392	3300004114	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGTQVTPVLDGTR*
Ga0062593_1010235191	3300004114	Soil	MPPQERVPIGRVIPWVVLVVLLFAGLVLYFRYGSQVTSLIDGPR*
Ga0063356_1028054951	3300004463	Arabidopsis Thaliana Rhizosphere	MPPQDRVPMGRVIPWVVLVVLLIAGLVLYFKYGTQVTPLLDGTR*
Ga0062595_1012687721	3300004479	Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0062592_1023498021	3300004480	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQVTPLLDGTR*
Ga0062591_1003682221	3300004643	Soil	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDATR*
Ga0070658_100922641	3300005327	Corn Rhizosphere	LTLYHTMPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR*
Ga0070658_106275642	3300005327	Corn Rhizosphere	PQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
Ga0070683_1014757171	3300005329	Corn Rhizosphere	LTVSHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0068869_1007982121	3300005334	Miscanthus Rhizosphere	LTVSHTMPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR*
Ga0070660_1013472911	3300005339	Corn Rhizosphere	MPPQERVPIGRVIPWVILVVLLFAGLVLYFLYGSQVTSLIDGPR*
Ga0070689_1005272821	3300005340	Switchgrass Rhizosphere	PMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLNSTR*
Ga0070692_101140162	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLNSTR*
Ga0070671_1001260291	3300005355	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLLAGLVLYFRYGPQVTSLLDGTR*
Ga0070671_1008241262	3300005355	Switchgrass Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPVLNSTR*
Ga0070673_1000847263	3300005364	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDG
Ga0070703_104275492	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LELTVSYPMPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR*
Ga0070678_1018672781	3300005456	Miscanthus Rhizosphere	MPPQERVPIGRVIPWVILVVLLFAGLVLYFRYGSQVTSLLDGPR*
Ga0070698_1006292091	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGTKVTPLLDGTR*
Ga0073909_100597082	3300005526	Surface Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGGQVTPLLDSTR*
Ga0070665_1000418363	3300005548	Switchgrass Rhizosphere	MPPQDRVPIGRVIPWVVLVLLLIAGVVLYFRYGTQITPLLDGTR*
Ga0070665_1025078032	3300005548	Switchgrass Rhizosphere	LYHTMPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR*
Ga0068857_1005694792	3300005577	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTP
Ga0068852_1027190662	3300005616	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITP
Ga0068870_109363902	3300005840	Miscanthus Rhizosphere	TVSHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0082029_14125132	3300006169	Termite Nest	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTRVTPILDSTR*
Ga0082029_16693353	3300006169	Termite Nest	MPPQDRVPIGRVIPWVILVVLLIVGLVLYFQYGADVTPLVDGTR*
Ga0097621_1009305241	3300006237	Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLQHALSG
Ga0075428_1000406413	3300006844	Populus Rhizosphere	MPPQDRAPIGRVIPWVVLIVLLLAGLVLYFRYGARVTPILDSTR*
Ga0075428_1001000422	3300006844	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPILDSTR*
Ga0075428_1003399722	3300006844	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRFGTQVTPLLDGTR*
Ga0075428_1011582652	3300006844	Populus Rhizosphere	IGRVIPWVVLIVLLLAGLVLYFRYGTGVTPVLNSTR*
Ga0075428_1012640691	3300006844	Populus Rhizosphere	MPPQDRIPIGRVIPWVVLVVLLIGGLVLYFTYGSRVTPLLDGTR*
Ga0075421_1000204816	3300006845	Populus Rhizosphere	MLPQDRVPIGRVIPWVILVVLLVVGLVLYFQYGADVTPLVDGTR*
Ga0075421_1000221464	3300006845	Populus Rhizosphere	MPPQDRVPIGRVIPWVILVVLLVVGLVLYFRYGADVTPLVDGTR*
Ga0075421_1001271442	3300006845	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLLVLLVAGVVLYFRYGTQITPLLDGTR*
Ga0075421_1018743461	3300006845	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYLRYGVQVTPLLDGTR*
Ga0075430_1000013089	3300006846	Populus Rhizosphere	MPPQDRVPIGRVIPWVILVVLLIAGLVLYFSYGSDVTPLLDGTR*
Ga0075430_1006761731	3300006846	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYLRYGVQVTPLLDGT
Ga0075431_1004985561	3300006847	Populus Rhizosphere	MPPQDRIPIGRVIPWVVLVVLLIGGLVLYFTYGSRVTPLLDGT
Ga0075434_1011412902	3300006871	Populus Rhizosphere	VPIGRVIPWVVLVILLVAGLVLYFRYGNQVTPLLDGTR*
Ga0079217_101538312	3300006876	Agricultural Soil	MPPQERVPIGRVIPWVILVVLLIAGLVLYFSYGSDVTPLLDGSR*
Ga0079217_102815902	3300006876	Agricultural Soil	MPPQDRVPIGRVIPWVILVVLLLAGIVLYFRYGTQVTPLLDGTP*
Ga0079217_110516142	3300006876	Agricultural Soil	MPPQDRVPLGRVIPWVVLVVLLITGLVLYFRYGTQVTPLLDGTR*
Ga0075429_1019855802	3300006880	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTGVTPVLNSTR*
Ga0079215_100369912	3300006894	Agricultural Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGAQVTPLLDGTR*
Ga0079219_104666541	3300006954	Agricultural Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFLYGGHVTPLLDGT
Ga0079218_119931242	3300007004	Agricultural Soil	IGRVIPWVVLVVLLLAGLVLYLRYGAQVTPLLNGTR*
Ga0075418_113728272	3300009100	Populus Rhizosphere	MPPQDRIPIGRVIPWVVLVVLLIEGLVLYFTYGSRVTPLLDGTR*
Ga0111538_134796382	3300009156	Populus Rhizosphere	RVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR*
Ga0126314_104179571	3300010042	Serpentine Soil	GRVIPWVVVLVLLIAGVVLYLRYGTQMTPLLDGTR*
Ga0126310_104442171	3300010044	Serpentine Soil	MPPQERVPIGRVIPWVVLVVLLFAGLVLYFRYGSQVTSLLDGPR*
Ga0126311_117391581	3300010045	Serpentine Soil	HTMPPQERVPIGRVIPWVILVVLLFAGLVLYFRYGPQVTSLLDGPR*
Ga0126306_101194101	3300010166	Serpentine Soil	MPPQDRVPIGRVIPWVVLVALLIAGVVLYFRYGTQITPLLDGTR*
Ga0157352_10793731	3300012519	Unplanted Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGARVTPILDSTR*
Ga0157301_104472321	3300012911	Soil	MPPQDRVPIGRVIPWIVLVVLLLAGVVLYFRYGTQVTPLLDGTC*
Ga0126369_105797762	3300012971	Tropical Forest Soil	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0157370_121222571	3300013104	Corn Rhizosphere	MAPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLDSTR*
Ga0157369_109917752	3300013105	Corn Rhizosphere	MAPQDRVPIGRVIPLVVLVVLLLAGLVLYFRYGTQVAPVLDSTR*
Ga0182007_100285092	3300015262	Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFLYGRQVTPLLDGTR*
Ga0132258_100126388	3300015371	Arabidopsis Rhizosphere	MSPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGGQVTPLLDSTR*
Ga0132257_1004133341	3300015373	Arabidopsis Rhizosphere	MPPQDRAPIGRVIPWVVLVVLLLAGLVLYFRYGARVTPILDSTR*
Ga0132255_1046897371	3300015374	Arabidopsis Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLVAGLVLYFRYGGQVTPLLDGTR*
Ga0163161_108473022	3300017792	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR
Ga0190270_104724192	3300018469	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQVTPLLDGTR
Ga0190274_100825291	3300018476	Soil	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR
Ga0190264_114507841	3300019377	Soil	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGAGTTPLLDGTR
Ga0190264_114609401	3300019377	Soil	MSPQDRVPIGRVIPWVVLVVLLIAGLVLYFRFVTQVTPLLDATR
Ga0182009_107867681	3300021445	Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLD
Ga0207656_101432132	3300025321	Corn Rhizosphere	MAPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR
Ga0207642_100930382	3300025899	Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPVLNSTR
Ga0207642_109769932	3300025899	Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQV
Ga0207647_100334973	3300025904	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR
Ga0207643_100120733	3300025908	Miscanthus Rhizosphere	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDATR
Ga0207643_111301601	3300025908	Miscanthus Rhizosphere	APQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR
Ga0207657_100305204	3300025919	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLNSTR
Ga0207649_102035332	3300025920	Corn Rhizosphere	QSMPPQERVPIGRVIPWVVLVVLLFAGLVLYFRYGSQVTSLIDGPR
Ga0207650_106419102	3300025925	Switchgrass Rhizosphere	TVSHTMPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR
Ga0207644_108879062	3300025931	Switchgrass Rhizosphere	MPPQERVPIGRVIPWVILVVLLFAGLVLYFRYGSQVTSLLDGPR
Ga0207670_105113872	3300025936	Switchgrass Rhizosphere	LTVYHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVTPVLNSTR
Ga0207669_109838652	3300025937	Miscanthus Rhizosphere	QDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPVLNSTR
Ga0207689_108477221	3300025942	Miscanthus Rhizosphere	MPPQERVPIGRVIPWVILVVLLFAGLVLYFRYGSQVTSLLDGP
Ga0207661_113138071	3300025944	Corn Rhizosphere	LTVSHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR
Ga0207668_113564882	3300025972	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGTQVTSLLD
Ga0207641_100282693	3300026088	Switchgrass Rhizosphere	SYPMPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTEVTPVLNSTR
Ga0207641_109413632	3300026088	Switchgrass Rhizosphere	MPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLD
Ga0207641_111162242	3300026088	Switchgrass Rhizosphere	LLLTLYHTMPPQERIPIGRVIPWVVLVVLLFAGLVLYFRYGPQVTSLLDGTR
Ga0207674_113467082	3300026116	Corn Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFLYGRQVTPLLDGTR
Ga0207683_101488393	3300026121	Miscanthus Rhizosphere	MPPQERVPIGRVIPWVVLVVLLFAGLVLYFRYGSQVTSLLDGPR
Ga0209818_11028621	3300027637	Agricultural Soil	QDRVPIGRVIPWVILVVLLLAGIVLYFRYGTQVTPLLDGTP
Ga0209485_10121373	3300027691	Agricultural Soil	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGAQVTPLLDGTR
Ga0209461_100946662	3300027750	Agave	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQITPLLDGTR
Ga0209481_102589681	3300027880	Populus Rhizosphere	TMPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDGTR
Ga0209481_102985581	3300027880	Populus Rhizosphere	HPMPPQDRAPIGRVIPWVVLIVLLLAGLVLYFRYGARVTPILDSTR
Ga0209486_104961692	3300027886	Agricultural Soil	MPPQDRVPMGRVIPWVVLVVLLIAGLVLYFKYGTQVTPLLDGTR
Ga0209486_105854001	3300027886	Agricultural Soil	MPPQDRVPIGRVIPWVILVVLLLAGIVLYFRYGTQVTPLLDGTP
Ga0207428_102986501	3300027907	Populus Rhizosphere	MPPQDRAPIGRVIPWVVLIVLLLAGLVLYFRYGARVTPILDSTR
Ga0207428_111772042	3300027907	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTGVTP
Ga0207428_112788272	3300027907	Populus Rhizosphere	EGHLELTVSHPMPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTGVTPVLNSTR
Ga0209382_100087479	3300027909	Populus Rhizosphere	MLPQDRVPIGRVIPWVILVVLLVVGLVLYFQYGADVTPLVDGTR
Ga0209382_101201273	3300027909	Populus Rhizosphere	MPPQDRVPIGRVIPWVILVVLLVVGLVLYFRYGADVTPLVDGTR
Ga0209382_102669013	3300027909	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLLVLLVAGVVLYFRYGTQITPLLDGTR
Ga0209382_107996952	3300027909	Populus Rhizosphere	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTQVTPILDSTR
Ga0268266_100629642	3300028379	Switchgrass Rhizosphere	MPPQDRVPIGRVIPWVVLVLLLIAGVVLYFRYGTQITPLLDGTR
Ga0247822_116285721	3300028592	Soil	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTGVTPVLNSTR
Ga0310888_100277553	3300031538	Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGGQVTPLLDSTR
Ga0307408_1020921011	3300031548	Rhizosphere	GRVIPWVVLVVLLIAGVVLYFRYGTQVTPLLDGTR
Ga0307405_103119792	3300031731	Rhizosphere	MPPQDRVPIGRVIPWVVVLVLLIAGVVLYLRYGTQITPLLDGTR
(restricted) Ga0255338_1000107168	3300031825	Sandy Soil	VPTGRVIPWVILLVLLVAGLVLYFRYGGGVSPLLDGTR
Ga0310893_101683912	3300031892	Soil	MPPQDRVPIGRVIPWVVLIVLLLAGLVLYFRYGTE
Ga0307407_107476252	3300031903	Rhizosphere	MPPQDRVPMGRVIPWVVLVLLLIAGLVLYFKYGTQVTPLLDGTR
Ga0307412_109544532	3300031911	Rhizosphere	MPSPDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQVTPLLDGTR
Ga0310885_102862082	3300031943	Soil	MPPQDRVPIGRVIPWVVLVVLLLAGLVLYLRYGAQVTPLLDGTR
Ga0307409_1008023562	3300031995	Rhizosphere	MPPQDRVPIGRVIPWVVLVVLLIAGLVLYFRYGTKVTPVLDGTR
Ga0310903_101078671	3300032000	Soil	MPPQDRVPIGRVIPWIVLIVLLLAGLVLYFRYGTEVTPVLNSTR
Ga0310906_100743922	3300032013	Soil	HLELTVSHTMPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLDATR
Ga0310899_100990142	3300032017	Soil	MPPQDRVPIGRVIPWVVLLVLLIAGVVLYFRYGTQITPLLD
Ga0308173_118383911	3300032074	Soil	LELTVSHPMPPQDRVPIGRVIPWVVLVVLLLAGLVLYFRYGTQVAPVLDSTR
Ga0310810_103126622	3300033412	Soil	MPPQDRVPIGRVIPWVVLIVLLIAGLVLYFRYGSHATPLLDGTR
Ga0364925_0085528_541_675	3300034147	Sediment	MPPQDRVPIGRVIPWVVLVVLLIAGVVLYFRYGTQVTPLIDGTR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters