Metagenome / Metatranscriptome Family F062596

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062596
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	105 residues
Representative Sequence	MTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAEKLEEKYARFFQQSGLFVERLAEEKPRYQAVSEARLQELAAKLGAAGPLSEVIVAERGRN
Number of Associated Samples	98
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.15 %
% of genes near scaffold ends (potentially truncated)	27.69 %
% of genes from short scaffolds (< 2000 bps)	87.69 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (31.539 % of family members)
Environment Ontology (ENVO)	Unclassified (36.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.385 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.96% β-sheet: 0.00% Coil/Unstructured: 45.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF01850	PIN	15.50
PF01266	DAO	2.33
PF05685	Uma2	2.33
PF13091	PLDc_2	1.55
PF01724	DUF29	1.55
PF03167	UDG	1.55
PF08369	PCP_red	1.55
PF00211	Guanylate_cyc	1.55
PF00528	BPD_transp_1	1.55
PF13641	Glyco_tranf_2_3	1.55
PF01844	HNH	0.78
PF05448	AXE1	0.78
PF11848	DUF3368	0.78
PF13424	TPR_12	0.78
PF00296	Bac_luciferase	0.78
PF07592	DDE_Tnp_ISAZ013	0.78
PF05168	HEPN	0.78
PF00145	DNA_methylase	0.78
PF00596	Aldolase_II	0.78
PF03050	DDE_Tnp_IS66	0.78
PF00496	SBP_bac_5	0.78
PF04365	BrnT_toxin	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	2.33
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	1.55
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	1.55
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.55
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	1.55
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.78
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.78
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.78
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.78
COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.78
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.78
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.78
COG3458	Cephalosporin-C deacetylase or related acetyl esterase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.38 %
Unclassified	root	N/A	14.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.38 %
Unclassified	root	N/A	14.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.38 %
Unclassified	root	N/A	14.62 %

Name	Rank	Taxonomy	Distribution
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	64.62 %
Unclassified	root	N/A	14.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.54 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	64.62 %
Unclassified	root	N/A	14.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.54 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.77 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	64.62 %
Unclassified	root	N/A	14.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.54 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.77 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	64.62 %
Unclassified	root	N/A	14.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.54 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.77 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	64.62 %
Unclassified	root	N/A	14.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.54 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.77 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	64.62 %
Unclassified	root	N/A	14.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.54 %
Thiocapsa marina	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina	0.77 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11679963	Not Available	1074	Open in IMG/M
3300000955\|JGI1027J12803_100921585	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	602	Open in IMG/M
3300004463\|Ga0063356_100339298	All Organisms → cellular organisms → Bacteria	1891	Open in IMG/M
3300004798\|Ga0058859_10622599	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	603	Open in IMG/M
3300005176\|Ga0066679_10137442	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1520	Open in IMG/M
3300005181\|Ga0066678_10359695	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	961	Open in IMG/M
3300005294\|Ga0065705_10149927	All Organisms → cellular organisms → Bacteria	1957	Open in IMG/M
3300005294\|Ga0065705_10905416	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300005295\|Ga0065707_10063254	Not Available	654	Open in IMG/M
3300005332\|Ga0066388_100472909	All Organisms → cellular organisms → Bacteria → Proteobacteria	1893	Open in IMG/M
3300005332\|Ga0066388_101213313	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1291	Open in IMG/M
3300005444\|Ga0070694_101912047	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	507	Open in IMG/M
3300005447\|Ga0066689_10326268	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	955	Open in IMG/M
3300005467\|Ga0070706_100171798	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2024	Open in IMG/M
3300005468\|Ga0070707_100100929	All Organisms → cellular organisms → Bacteria	2796	Open in IMG/M
3300005544\|Ga0070686_100402854	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1041	Open in IMG/M
3300005719\|Ga0068861_101749338	Not Available	616	Open in IMG/M
3300005981\|Ga0081538_10294770	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300006796\|Ga0066665_10866921	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	703	Open in IMG/M
3300006844\|Ga0075428_100586016	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1191	Open in IMG/M
3300006845\|Ga0075421_100601535	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1292	Open in IMG/M
3300006845\|Ga0075421_101462070	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	749	Open in IMG/M
3300006845\|Ga0075421_102202127	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	582	Open in IMG/M
3300006865\|Ga0073934_10041691	All Organisms → cellular organisms → Bacteria	4148	Open in IMG/M
3300006876\|Ga0079217_11602577	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	520	Open in IMG/M
3300009012\|Ga0066710_100351494	All Organisms → cellular organisms → Bacteria	2180	Open in IMG/M
3300009038\|Ga0099829_10010444	All Organisms → cellular organisms → Bacteria → Proteobacteria	6003	Open in IMG/M
3300009081\|Ga0105098_10623735	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	564	Open in IMG/M
3300009089\|Ga0099828_10204052	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1765	Open in IMG/M
3300009090\|Ga0099827_10389530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina	1190	Open in IMG/M
3300009090\|Ga0099827_10723416	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	860	Open in IMG/M
3300009090\|Ga0099827_11495660	Not Available	588	Open in IMG/M
3300009090\|Ga0099827_11991792	Not Available	504	Open in IMG/M
3300009100\|Ga0075418_10646973	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1139	Open in IMG/M
3300009137\|Ga0066709_100627831	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1534	Open in IMG/M
3300009137\|Ga0066709_101469729	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	986	Open in IMG/M
3300009146\|Ga0105091_10328327	Not Available	751	Open in IMG/M
3300009147\|Ga0114129_11389378	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	867	Open in IMG/M
3300009147\|Ga0114129_11850711	Not Available	733	Open in IMG/M
3300009147\|Ga0114129_12901328	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	567	Open in IMG/M
3300009168\|Ga0105104_10034425	All Organisms → cellular organisms → Bacteria	2820	Open in IMG/M
3300009444\|Ga0114945_10248992	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300009444\|Ga0114945_10460333	Not Available	763	Open in IMG/M
3300009811\|Ga0105084_1082243	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	595	Open in IMG/M
3300009816\|Ga0105076_1108868	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	543	Open in IMG/M
3300009818\|Ga0105072_1076708	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	654	Open in IMG/M
3300010043\|Ga0126380_10892806	Not Available	737	Open in IMG/M
3300010043\|Ga0126380_11780631	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	556	Open in IMG/M
3300010043\|Ga0126380_11795905	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	554	Open in IMG/M
3300010047\|Ga0126382_10514884	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	965	Open in IMG/M
3300010047\|Ga0126382_10606427	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	902	Open in IMG/M
3300010047\|Ga0126382_10823959	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	794	Open in IMG/M
3300010047\|Ga0126382_12090685	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	542	Open in IMG/M
3300010359\|Ga0126376_10453611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1172	Open in IMG/M
3300010359\|Ga0126376_11074872	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	811	Open in IMG/M
3300010360\|Ga0126372_11188033	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	786	Open in IMG/M
3300010361\|Ga0126378_10598322	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1217	Open in IMG/M
3300010361\|Ga0126378_10874717	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1006	Open in IMG/M
3300010362\|Ga0126377_10171845	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2054	Open in IMG/M
3300010362\|Ga0126377_13436280	Not Available	512	Open in IMG/M
3300010397\|Ga0134124_10610098	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1070	Open in IMG/M
3300011271\|Ga0137393_11423048	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	583	Open in IMG/M
3300012189\|Ga0137388_11435518	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	628	Open in IMG/M
3300012199\|Ga0137383_10797548	Not Available	689	Open in IMG/M
3300012201\|Ga0137365_10255821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1302	Open in IMG/M
3300012201\|Ga0137365_10913925	Not Available	640	Open in IMG/M
3300012201\|Ga0137365_11224080	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	536	Open in IMG/M
3300012204\|Ga0137374_10321421	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300012204\|Ga0137374_10583437	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	855	Open in IMG/M
3300012206\|Ga0137380_10048433	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3899	Open in IMG/M
3300012207\|Ga0137381_10154268	All Organisms → cellular organisms → Bacteria	1977	Open in IMG/M
3300012209\|Ga0137379_10544672	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1068	Open in IMG/M
3300012209\|Ga0137379_11288781	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	636	Open in IMG/M
3300012211\|Ga0137377_10661263	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	980	Open in IMG/M
3300012212\|Ga0150985_114172316	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300012350\|Ga0137372_10448752	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	968	Open in IMG/M
3300012353\|Ga0137367_10754681	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	676	Open in IMG/M
3300012355\|Ga0137369_10356648	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1066	Open in IMG/M
3300012358\|Ga0137368_10075524	All Organisms → cellular organisms → Bacteria	2709	Open in IMG/M
3300012359\|Ga0137385_11019081	Not Available	682	Open in IMG/M
3300012362\|Ga0137361_10140761	All Organisms → cellular organisms → Bacteria	2146	Open in IMG/M
3300012469\|Ga0150984_113028148	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	540	Open in IMG/M
3300012685\|Ga0137397_10123411	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1909	Open in IMG/M
3300012922\|Ga0137394_10478636	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1058	Open in IMG/M
3300012922\|Ga0137394_11043649	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300012929\|Ga0137404_10047537	All Organisms → cellular organisms → Bacteria	3273	Open in IMG/M
3300012930\|Ga0137407_10485782	Not Available	1152	Open in IMG/M
3300012944\|Ga0137410_10932041	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	736	Open in IMG/M
3300012948\|Ga0126375_11049889	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	667	Open in IMG/M
3300015053\|Ga0137405_1160800	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	543	Open in IMG/M
3300015053\|Ga0137405_1343735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5163	Open in IMG/M
3300015053\|Ga0137405_1343735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5163	Open in IMG/M
3300015245\|Ga0137409_10596982	Not Available	934	Open in IMG/M
3300015245\|Ga0137409_10663629	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	875	Open in IMG/M
3300015372\|Ga0132256_101529192	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	778	Open in IMG/M
3300017659\|Ga0134083_10332574	Not Available	650	Open in IMG/M
3300018063\|Ga0184637_10315545	Not Available	945	Open in IMG/M
3300018077\|Ga0184633_10386849	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	701	Open in IMG/M
3300018422\|Ga0190265_12244540	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	648	Open in IMG/M
3300018466\|Ga0190268_10187725	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1110	Open in IMG/M
3300019259\|Ga0184646_1193467	Not Available	851	Open in IMG/M
3300019487\|Ga0187893_10793157	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	576	Open in IMG/M
3300020170\|Ga0179594_10261308	Not Available	653	Open in IMG/M
3300022195\|Ga0222625_1321261	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	815	Open in IMG/M
3300022563\|Ga0212128_10121216	All Organisms → cellular organisms → Bacteria → Proteobacteria	1688	Open in IMG/M
3300022563\|Ga0212128_10210655	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1237	Open in IMG/M
3300025910\|Ga0207684_10354730	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1262	Open in IMG/M
3300025922\|Ga0207646_10086224	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2809	Open in IMG/M
3300026035\|Ga0207703_10410774	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1258	Open in IMG/M
3300027577\|Ga0209874_1082609	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300027743\|Ga0209593_10005199	All Organisms → cellular organisms → Bacteria	5427	Open in IMG/M
3300027846\|Ga0209180_10044675	All Organisms → cellular organisms → Bacteria	2430	Open in IMG/M
3300027882\|Ga0209590_10539225	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	752	Open in IMG/M
3300027882\|Ga0209590_10788024	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	604	Open in IMG/M
3300027882\|Ga0209590_10950796	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	538	Open in IMG/M
3300027909\|Ga0209382_10718562	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1073	Open in IMG/M
3300027909\|Ga0209382_11315192	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	732	Open in IMG/M
3300027909\|Ga0209382_12062461	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	545	Open in IMG/M
3300028380\|Ga0268265_12066401	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	577	Open in IMG/M
3300030006\|Ga0299907_10152488	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1911	Open in IMG/M
3300030570\|Ga0247647_1176600	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	595	Open in IMG/M
3300030600\|Ga0247659_1136679	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	590	Open in IMG/M
3300030619\|Ga0268386_10779213	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	614	Open in IMG/M
3300030620\|Ga0302046_11281043	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	574	Open in IMG/M
3300030785\|Ga0102757_11282288	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	792	Open in IMG/M
3300030903\|Ga0308206_1043550	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	866	Open in IMG/M
3300031093\|Ga0308197_10176711	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	708	Open in IMG/M
3300031114\|Ga0308187_10062336	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1062	Open in IMG/M
3300032002\|Ga0307416_102634670	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	600	Open in IMG/M
3300034681\|Ga0370546_032063	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	751	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.85%
Host-Associated	Host-Associated	16.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.85%
Plants	Host-Associated → Plants	15.38%
Aquatic	Environmental → Aquatic	10.00%
Human	Host-Associated → Human	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.77%
Freshwater	Environmental → Aquatic → Freshwater	4.62%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%
Sediment	Environmental → Aquatic → Sediment	1.54%
Cave	Environmental → Terrestrial → Cave	0.77%
Digestive System	Host-Associated → Human → Digestive System	0.77%
Roots	Host-Associated → Plants → Roots	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.23%
Loam	Environmental → Terrestrial → Soil → Loam	6.15%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.62%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.08%
Sand	Environmental → Terrestrial → Soil → Sand	3.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.54%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.54%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.77%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.77%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.62%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	3.08%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.77%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.77%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	31.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.08%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	3.08%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.08%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.31%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.54%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.77%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.77%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.77%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030570	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb12 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030600	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb12 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300030785	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_116799632	3300000787	Soil	MTQLTIELPEALARHLAWLASAQQKSVEQVVVEQLESLLAPAAEHLEXKYAQFFQQXGLFVERLAEEKSLYHAVSEARLKELAAKLGAAGPLSXVIVAERGQN*
JGI1027J12803_1009215851	3300000955	Soil	MTQLTIEIPEALAQRLAWLASEQKKSVEQVVVEQLESLLEPTAANLEEKYARFVQQSGLFVERLTAEKQHYQAVSEARLQELSAKLGAAGPLSEVIIAERDRH*
Ga0063356_1003392981	3300004463	Arabidopsis Thaliana Rhizosphere	MTRLTIDIPDALAWRLSRLASEQNKSVEQVAIEQLELLLGPATANLGEQYERFFRQSGLFVERLAGDKPRYQAVSEERLKELAAKLGRAEPLSEVIMAE*
Ga0058859_106225992	3300004798	Host-Associated	MTQLTIEIPEALARHLAWVASEQNKSVEQVAVEQLESLLAPAAENLGEKYARFFQQSGLFVERLAEEKPRYQAVSEARLKELAAKLGAAGPLSEVIVAERGQN*
Ga0066679_101374422	3300005176	Soil	MTQLTIEIPDVLARRLAWLASEQKKSVEQVAMEHLESLLEPAAEKLEEKYARFFQQSGLFIERLAEEKPRYQAVSEERLQALAAKLGAAGPLSEVIVAERGRN*
Ga0066678_103596952	3300005181	Soil	MTQLTIEIPDALARRLAWLASEQKKSVEQVAVEHLESLLAPAAEKLEEKYARFFQQSGLFVERLAEEKPRYQAVSEERLQALAAKLGAAGPLSEVIVAERG*
Ga0065705_101499273	3300005294	Switchgrass Rhizosphere	MTQLTIEIPEALARRLAWLASEQNKSVEQVAVEQLESLLAPAAENLEEKYARFFQQSSLFVERLAEEKPRYHAVSEARLKELAAKLGAAGPLSEVIVAERGQS*
Ga0065705_109054161	3300005294	Switchgrass Rhizosphere	MTQLTIEIPEALAQRLARLASEQHKSVEQVAVEQLESLLAPLAQEKLEEKYAQFFQQSGLFVERLAEEKARYQAVSEARSKELAAKLGAAGPLSEVIVAERGQN*
Ga0065707_100632542	3300005295	Switchgrass Rhizosphere	MTQLTIEIPEALARRLAWLASEQNKSVEQVTVEQLESLLAPAAENLEEKYARFFQQSSLFVERLAEEKPRYHAVSEARLKELAAKLGAA
Ga0066388_1004729092	3300005332	Tropical Forest Soil	MTMALWQEVTAMTQLTIEIPEALAQRLARLASEQHKSIEQVAVEQLESLLAPPAQENLEEKYAQFFQQSGLFVERLAEEKARYQAVSEARLKELAAKLGAAGPLSEVIVAERGQN*
Ga0066388_1012133132	3300005332	Tropical Forest Soil	MTQLTIEIPEALARRLAWLASEQKKSVEQVVVEQLESILEPAAANLEERYARFFQESGLFVERLTAEKQPYQAVSEARLKELSAKLGAAGPLSEVIIAERDRR*
Ga0070694_1019120471	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	EIPDALAQHLAWLASEQKKSVEQVAVEQLESLLAPAAENLEEKYERFFQQSGLFVERLSEEKQHSQTISETQLKELAAKLGAAGPLSEVIIEERGRN*
Ga0066689_103262682	3300005447	Soil	MRKEVAAMTQLTIEISDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAWKLGAAGPLSEVIVAERDLN*
Ga0070706_1001717982	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTQLTIEISDALARRLAWLASEQKKSVAQVAIEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAGKLGAAGPLSEVIVAERDLN*
Ga0070707_1001009291	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	QLTIEIPEALAQRLAWLAAEQKKSVEQVALEQLASLLEPPTENLAERYNRFFKESGLFAEVSEEEKQRYQPVSEERLKELAAKLGAAGPLSEVMIEERGRS*
Ga0070686_1004028542	3300005544	Switchgrass Rhizosphere	MTQLTIEIPEALARHLAWVASEQNKSVEQVAVEQLESLLAPAAENLGEKYARFFQQSGLFVERLAEEKPRYQAVSEARLKELVAKLGAAGPLSEVIVAERGQN*
Ga0068861_1017493382	3300005719	Switchgrass Rhizosphere	MTQLTIEIPEALARHLAWVASEQNKSVEQVAVEQLESLLAPAAENLGEKYARFFQQSGLFVERLAEEKPRYQAVSEARLKELAAKLGAAGPLSEVIVA
Ga0081538_102947701	3300005981	Tabebuia Heterophylla Rhizosphere	MTQLTIEIPDALARRLAFLASEQNKSVEQVAVEQLASLLESAAENLEERYERFLRQSGLFVERLAEEKQRYQAVSEERLKELAAKLGAAGPLSDVIVAARGRN*
Ga0066665_108669211	3300006796	Soil	MTQLTIEIPDALARRLAWLASEQKKSVAQVAIEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAGKLGAAGPLSEVIVAERDLN*
Ga0075428_1005860163	3300006844	Populus Rhizosphere	LEIPDALAQHLAWLASEQKKSVEQVAVEQLESLLAPAAENLEERYERFFQQSGLFVERLAEEKQPSQSISETQLKELAAKLGAAGPLSEVIVEERGRN*
Ga0075421_1006015352	3300006845	Populus Rhizosphere	MTQLTIDIPEAVARHLARLASEQNKSVEQVAIEQLELLLGTAPANLGEHYERFFRQSGLFAGRLAEEKLRYQAVSEERLRELAAKLGRVGPLSEVIMAERDRT*
Ga0075421_1014620702	3300006845	Populus Rhizosphere	MIHLTLEIPDALARHLAWLASAQKKSVEQVAVEQLESLLEPAAESLEEKYARFFQQSGLFVERLAEEKQRYQAISEARLQELAAKLGAAGPLSDVIVAERGQH*
Ga0075421_1022021272	3300006845	Populus Rhizosphere	AWLASEQKKSVEQVAVEHLESLLEPAPANLEEKYERFFQQSGLFVEGLTAEKPCYQAASEARLKELAAKLGAAGPLSELIVAERDRL*
Ga0073934_100416916	3300006865	Hot Spring Sediment	MSQVVIEIPDPLAQRLASLAAEQKKSVEQLVLEHLTSLFEPLRENLKKRYEQFFKESRLFVEVSKEEKSQCQPVSEARLKELAAKLGAAGPLSEVIIEERRGS*
Ga0079217_116025772	3300006876	Agricultural Soil	MAQLTIELPDALARHLARLASEQKKSVEQVAVEQLESLLEPAAENLAEKYARFFQQSGLFVERLAEEKQRSQAVSEARLQELAAKLGAAGPLSEVIIAERDRH*
Ga0066710_1003514943	3300009012	Grasslands Soil	MTQLTIEIPDALAQRLAWLAAEQKKSVEQVAVEQLESLLTPAVEKLEEKYGRFFQQSGLFVERPAEEKPHYQAVSEARLKELAAKLGAAGPLSEVNVAERDRN
Ga0099829_100104442	3300009038	Vadose Zone Soil	MSETAIRKEATAMTQLTIEIPDALAQHLAWLASEQKKSVEQVAVEQLESLLESAAENLEEKYERFFQQSGLFVERLAEEKQHRQTVSETRLKELAAKLGAAGPLSEVIVEERGRH*
Ga0105098_106237351	3300009081	Freshwater Sediment	MTQLTIEISDALAQHLAWLASEQKKSVEQVAVEQLASLLEPAAENLEDKYERFFQQSGLFVKRLGEEQQRYQAVSDERLKELAAKLGAAGPLSEVIVAERGRT*
Ga0099828_102040523	3300009089	Vadose Zone Soil	MTQLTIEIPDALAQHLAWLASEQKKSVEQVAVEQLESLLESAAENLEEKYERFFQQSGLFVERLAEEKQHRQTVSETRLKELAAKLGAAGPLSEVIVEERGRH*
Ga0099827_103895303	3300009090	Vadose Zone Soil	AQLTIEIPDALARRLAWLASEQRKTVEQVAVEQLESLLEPAAENLEEKYERFFQQSGLFVERLAAEQQRYQAVSAERLKELAAKLGAAGPLSEVIVAERDRH*
Ga0099827_107234162	3300009090	Vadose Zone Soil	MTRALRKEVTAMTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLGPAAEKLEEKYERFFQQSGLFTERLAEEKPRYQAVSEERLQELAAKLGAAGPLSEVIVAERGRN*
Ga0099827_114956601	3300009090	Vadose Zone Soil	MTRALRREVTTVTQLTIEIPEALARRLAWLASEQKKSVEQVAVEQLESLLEPATENLEEKYARFFQQSGLFVERLAAEKQRYPAVPEERLKELAAKLGAAGPLSE
Ga0099827_119917921	3300009090	Vadose Zone Soil	MTRALWKEVTTMTQLTLEIPEALAQRLAWLASEQKKSVEQVAAEQLASLLEPAAENLEGKYARFFQQSGLFVERLAEEKSRYQAVSEARLQELAAKLGAAGPLSEVIVAERGQN*
Ga0075418_106469733	3300009100	Populus Rhizosphere	LAWLASEQKKSVEQVAVEQLESLLAPAAENLEERYERFFQQSGLFVERLAEEKQPSQSISETQLKELAAKLGAAGPLSEVIVEERGRN*
Ga0066709_1006278312	3300009137	Grasslands Soil	MRKEVAAMTQLTIEISDALARRLAWLASEQKKSVAQVAIEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAGKLGAAGPLSEVIVAERDLN*
Ga0066709_1014697292	3300009137	Grasslands Soil	MTQLTIEIPDALAQRLAWLAAEQKKSVEQVAVEQLESLLTPAVEKLEEKYGRFFQQSGLFVERPAEEKPHYQAVSEARLKELAAKLGAAGPLSEVIVAERDRN*
Ga0105091_103283271	3300009146	Freshwater Sediment	MTQLTIEISDALAQHLAWLASEQKKSVEQVAVEQLASLLEPGGENLEEQYERFFQQSGLFVERLAVEKQRYQAVSEERLKELAAMLGAAGPLSEVIVAERGRN*
Ga0114129_113893781	3300009147	Populus Rhizosphere	MSKRAIRKEATAMTQLTLEIPDALAQHLAWLASEQKKSVEQVAVEQLESLLAPAAENLEERYERFFQQSGLFVERLAEEKQPSQSISETQLKELAAKLGAAGPLSEVIVEERGRN*
Ga0114129_118507111	3300009147	Populus Rhizosphere	MTQLTIDIPEAVAWHLARLASEQNKSVEQVAIEQLELLLGTVPANLEEQYERFFRQSGLFVERLAGDKPRYQAVSEERLKELAAKLGRAEPLSEVIMAE*
Ga0114129_129013281	3300009147	Populus Rhizosphere	MTRALWKEVTAMTQLTIEIPEALAQRLARLALEQHKSVEQVAVEQLESLLAPPATENLEEKYAQFFQQSGLFVERLAEEKARYQAVSEARLKELAAKLGAAGPLSAVIVAERGQN*
Ga0105104_100344254	3300009168	Freshwater Sediment	MTQLTIEISGALAKHLAGLASEQKKSVEQVAVEQLASLLEPAAENLEDKYERFFQQSGLFVKRLGEEQQRYQAVSDERLKELAAKLGAAGPLSDVIVAERGQT*
Ga0114945_102489922	3300009444	Thermal Springs	MTKAARKEVTAMTQLTIEISDALARRLAWLASEQRKSVEHVAVEQLESVLEAAAGNLEEKYERFFQQTDLFVERPAEEQPQSRAVSEERLKELAAKRGAAGPLSDVIIAERGRH*
Ga0114945_104603331	3300009444	Thermal Springs	ISDALARRLAWLASEQKKSVEQVAVEQLEALLEPAAENLAEKYARFFQQSGLFVERLAEEKERYQAVSEERLKERAAKLRAAGPLSEVIED*
Ga0105084_10822432	3300009811	Groundwater Sand	MTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEAAAENLEEKYVRFFQQSGLFVERLAEEKPRYQAVSEVRLQELAAKLGAAGPLSEVIVAERGQN*
Ga0105076_11088682	3300009816	Groundwater Sand	ARRLAWLASEQKKSVEQVAVEQLTSLLERATENLEERYERFFQQSGLFVERLAAEKQRYQAVSEARLKELAAKLGAAGPLSEVIVAERGRN*
Ga0105072_10767081	3300009818	Groundwater Sand	MTRALRKEVTAMTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAEKLEEKYARFFQQSGLFVERLAEEKPHYQAVSEERLQELAAKLGAAGPLSEVIVAERGRN*
Ga0126380_108928061	3300010043	Tropical Forest Soil	MSKRAIRKEATAMTQLTIEIPDALAQYLAWLASEQKKSVEQVAVEQLESLLAPAAESLEEKYEGFFRQSGLLVEGFQEEKRHSQPVSKTQLKELAAKLRAAGPL
Ga0126380_117806312	3300010043	Tropical Forest Soil	MTGALRKEVTAMTQLTIEIPEALAQRLAWLASEQKKSVAQVVVEQLESLLEPTAANLEEKYSRFVQQSGLFVERLTAEKQPYQAVSEARLKELSAKLGAAGPLSEVIIAERDRH*
Ga0126380_117959051	3300010043	Tropical Forest Soil	MSRAFRKEVTAMTQLTIELPEALARHLAWLASAQQKSVEQVVVEQLESLLAPAAEHLEEKYAQFFQQSGLFVDRLAEEKSLYHAVSEARLQELAAKLGAAGPLSEVIVAERGQN*
Ga0126382_105148842	3300010047	Tropical Forest Soil	MPQLTIEIPEALAQRLAWLASEQKKSVEQVAVEQLESLLEPAVESPEEKYERFFQQSGLFVERLAEEKQRYQAVSEARLKELAAKLGAAGPLSDVILAERDRT*
Ga0126382_106064271	3300010047	Tropical Forest Soil	MSKRAMRKEATAMTQLTIEIPDALAQYLAWLASEQKKSVEQVAVEQLESLLAPAAENLEKKYERFFQQSGLFVERLAEEKQHAQTVSETRLKEPAVKLGAAGPLSEVIVEERGRN*
Ga0126382_108239592	3300010047	Tropical Forest Soil	MTRALWKEVTAMTQLTIEIPEALAQRLARLAAEQHKSVEQVAVEQLESLLAPLAQENLEEKYAQFFQQSGLFVERLAEEKARYQAVSEARLKELAAKLGAAGPLSEVIVAERGQN*
Ga0126382_120906851	3300010047	Tropical Forest Soil	MTRLTIEITDALAQRLAWLASEQKKSVEQVAVEQLESLLEPAAENLEERYARFFQQSGLFVERPAEVKQRYQAVSEERLQELAAKLGAAGPLSEVIIAERDRL*
Ga0126376_104536112	3300010359	Tropical Forest Soil	MTQLTLELPEALVQRLAWLASEQKKSVEQVAVEQLQSLLEQAAENLEEKYAQFLQQSGLFIERLAEKQQPYHLVSGERLQALAAKLGAAGPLSEVIIAERDRL*
Ga0126376_110748721	3300010359	Tropical Forest Soil	MTQLTIEIPEALAQRLARLASEQHKSIEQVAVEQLESLLAPPAQENLEEKYAQFFQQSGLFVERLAEEKACYQAVSEVRLKELAAKLGAAGPLSEVIVAERGQN*
Ga0126372_111880331	3300010360	Tropical Forest Soil	MTQLTIEIPEALAQRLARLAAEQHKSVEQVAVEQLESLLAPPAQENLEEKYAQFFQQSGLFVERLAEEKACYQAVSEVRLKELAAKLGAAGPLSEVIVAERGQN*
Ga0126378_105983221	3300010361	Tropical Forest Soil	NHARVERMSSGGTQPMVAWMFPIRIITRALRKEVTAMPQLTIEIPEALAQRLAWLASEQKKSVEQVAVEQLESLLEPAAEHLEETYERFFRQSGLFVERLAEEKQHYQAVSEERLKELAAKLGAAGPLSDVILAERDRT*
Ga0126378_108747172	3300010361	Tropical Forest Soil	MSKRAMRKEATAMTQLTIEIPDALAQYLAWLASEQKKSVEQVAVEQLESLLAPAAENLEKKYEQFFQQSGLFVERLSEERQHSQTISETQLKELAAKLGAAGPLSEVIIEERGR
Ga0126377_101718451	3300010362	Tropical Forest Soil	MTGALRKEVTAMTQLTIEIPEALARRLAWLASEQKKSVEQVVVEQLESILEPAAANLEERYARFFQESGLFVERLTAEKQPYQAVSEARLKELSAKLGAAGPLSEVIIAERDRR*
Ga0126377_134362802	3300010362	Tropical Forest Soil	MTRVLWKEVTAMTQLTIEIPDTLARRLAWLASEQNKSVEQVAVEQLESLLAPAAEHLEEKYAQFFQQSGLFVERLAEEKSLYHAVSEARLKELAAKLGAAGPLSEVIVAERGQN*
Ga0134124_106100981	3300010397	Terrestrial Soil	MTQLTIEIPEALARHLAWVASEQNKSVEQVAVEQLESLLAPAAENLGEKYARFFQQSGLFVERLAEEKPRYQAVSEARLKELAAKLGAAGPLSEVIVAERDRN*
Ga0137393_114230481	3300011271	Vadose Zone Soil	EIPDALARRLAWLASEQKKSVEQVAVEQLESLLAPAAEKLEEKYARFFQQSGLFVERLAEEKPRYQAVSEERLQELAAKLGAAGPLSEVIVAERGRN*
Ga0137388_114355182	3300012189	Vadose Zone Soil	MTRALWKEVTTMTQLTLEIPEALAQRLAWLASEQKKSVEQVAAEQLASLLEPAAENLEGKYARFFQQSGLFVERLAEEKSRYQAVSEARLQELAAKLGAAGPLSEVIVAERGRN*
Ga0137383_107975481	3300012199	Vadose Zone Soil	MSKRAIWKEAIAMTQLTIEIPDALAQHLAWLASEQKKSVEQVAVEQLESLLAPAAENLEEKYERFFQQSGLFVERLAEEKQHSQTVSETRLKELAAKLGAAGPL
Ga0137365_102558212	3300012201	Vadose Zone Soil	MTKALRKEVTAMTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLETILEPAAEKLEEKYARFFHQSGLFVERLAEEKPCYQAVSEERLQALAAKLGAAGPLSEVIVAERGRN*
Ga0137365_109139251	3300012201	Vadose Zone Soil	MTQLTIEIPDALAQRLAWLAAEQKKSVEQVAVEQLESLLTPAVEKLEEKYGRFFQQSGLFVERPAEEKPHYQAVSEARLKELAAKLGAAGP
Ga0137365_112240802	3300012201	Vadose Zone Soil	ALARRLACLAAEQKKSVEQVAVEQLESLLAPAAEHLEEKYARFFQQSGLFVERMAEEKPRYQAVSEARLKELAAKLGAAGPLSEVIVAERGRN*
Ga0137374_103214212	3300012204	Vadose Zone Soil	MTQLTIEIPDALAQRLAWLAAEQKKSVEQVAVEQLESLLTPAVEKLEEKYARFFQQSGLFVEQLEEEKQRYRAVSEERLKELATKLGAAGPLSEVIVAERGR
Ga0137374_105834372	3300012204	Vadose Zone Soil	MMRQLNLEVPDSLAQRLAQWAAKQKKSVEQMALELLASADEPSNHSLDARYQHFLDESGLFVKVTEEEKKRYQPASEERLKELADKLGAAGPLSQVIIEERGPR*
Ga0137380_100484335	3300012206	Vadose Zone Soil	MTQLTIEISDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAGKLGAAGPLSEVIVAERDLN*
Ga0137381_101542683	3300012207	Vadose Zone Soil	MRKEVAAMTQLTIEISDALARRLAWLASEQKKSVAQVAVEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAGKLGAAGPLSEVIVAERDLN*
Ga0137379_105446721	3300012209	Vadose Zone Soil	MTKARRKEVLAMTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAEKLEEKYARFFHQSGLFVERLAEEKPCYQAVSEERLQALAAKLGAAGPLSEVIVAERGRN*
Ga0137379_112887811	3300012209	Vadose Zone Soil	MRKEVAAMTQLTIEISDALARRLAWLASEQKKSVAQVAIEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAGKLGAAGPLSEVIVAERDLH*
Ga0137377_106612632	3300012211	Vadose Zone Soil	NAFKVPIRKAMRKEVAAMTQLTIEISDALARRLAWLASEQKKSVAQVAIEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAGKLGAAGPLSEVIVAERDLH
Ga0150985_1141723161	3300012212	Avena Fatua Rhizosphere	MIRALRKEVTAMTQLTIEIPEALARHLAWVASEQNKSVEQVAVEQLESLLAPAAENLGEKYARFFQQSGLFVERLAEEKPRYQAVSEARLKELGEAGGGGASL*
Ga0137372_104487521	3300012350	Vadose Zone Soil	MSKRAIWKEATAMTQLTIEIPDALAQHLAWLASEQKKSVEQVAVEQLESLLASAAENLEEKYERFFQQSGLFVERLAEEKQHPQTVSETRLQELAAKLGAAGPLSEVIVAERDRN*
Ga0137367_107546812	3300012353	Vadose Zone Soil	QLTIEIPDALAQRLAWLAAEQKKSVEQVAVEQLESLLTPAVEKLEEKYARFFQQSGLFVERPAEEKPHYQAVSEARLKELAAKLGAAGPLSEVIVAERDRN*
Ga0137369_103566482	3300012355	Vadose Zone Soil	MTQLTIEIPDALARRLACLASEQKKSVEQVAVEQLESLLAPAAEHLEEKYARVFQQSGLFVARMAEEKPRYQAVSEARLKELAAKLGAAGPLSEVIVAERDRN*
Ga0137368_100755242	3300012358	Vadose Zone Soil	MTQLTIEIPDALAQRLAWLAAEQKKSVEQVAVEQLESLLTPAVEKLEEKYARFFQQSGLFVERPAEEKPHYQAVSEARLKELAAKLGAAGPLSEVIVAERDRN*
Ga0137385_110190811	3300012359	Vadose Zone Soil	MSKRAIWKEATAMTQLTIEIPDALAQHLAWLASEQKKSVEQVAVEQLESLLASAAENLEEKYERFFQQSGLFVERLAEEKQHPQTVSETRLQELAAKLGAA
Ga0137361_101407613	3300012362	Vadose Zone Soil	MTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAEKLEEKYARFFQQSGLFVERLAEEKPRYQAVSEARLQELAAKLGAAGPLSEVIVAERGRN*
Ga0150984_1130281482	3300012469	Avena Fatua Rhizosphere	MIRALRKEVTAMTQLTIEIPEALARHLAWVASEQNKSVEQVAVEQLESLLAPAAENLGEKYARFFQQSGLFVERLAEEKPRYQAVSEARLKELAAKLGAAGPLSEVIVAERGQN*
Ga0137397_101234112	3300012685	Vadose Zone Soil	MVAWMFLIRTMTRALRKEVTAMAQLTIEIHDALARRLAWLASEQNKSVEQVAIEQLEALLEPATENLEEQYERFFQQSGLFVERRAEDKPRYQAVSEKRLKELAAKLGAAGPLSEVIIAERTRT*
Ga0137394_104786362	3300012922	Vadose Zone Soil	MVAWMFLIRTMTRALRKEVTAMAQLTIEIHDALARRLAWLASEQNKSVEQVAIEQLEALLEPATENLEEQYERFFQQSGLFVERRAEDKPRYQAVSEKRLKELAAKLGAAGPLSEVIIAERERT*
Ga0137394_110436492	3300012922	Vadose Zone Soil	MTAMTQLTIEISDALAQHLAWLASEQKKSVEQVAVEQLASLLEPAAENLEEKYKRFFQQSGLFVEQLAEEKQRYRAVSEERLKELAAKLGAAGPLSEVIVAERGRA
Ga0137404_100475373	3300012929	Vadose Zone Soil	MVAWMFLIRTMTRALRKEVTAMAQLTIEIHDALARRLAWLASEQNKSVEQVAIEQLEALLEPATENLEEQYERFFQQSGLFVERRAEDKPRYQAVSEKRLKELAAKLGAAGLLSEVIVAERGRT*
Ga0137407_104857822	3300012930	Vadose Zone Soil	MTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAEKLEEKYARFFQQSGLFAERLAEEKPRYQAVAEARLQELAAKLGAAGPLSEVIVAERGRN*
Ga0137410_109320411	3300012944	Vadose Zone Soil	RKNGFKVPICPMTRALRKEVTAVTQLTIELPDALARHLAWLASEQQKSVEQVVVEQLESLLAPAVENLEEKYARFFQQSGLFVERLAEEQARYQAVSEARLQELAAKLGAAGPLSEVIVAERGQN*
Ga0126375_110498891	3300012948	Tropical Forest Soil	MTQLTLEIPDALAQRLAWLASEQKKSVEQVAVEQLESLLEPAAENLEDKYARFFQQSGLFVERLAEEKQRYQAVSEARLKELATKLGAAGPLSEVIIAERDRL*
Ga0137405_11608001	3300015053	Vadose Zone Soil	MTRALRKEVTAMTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAEKLEEKYARFFQQSGLFVERLAEEKPRYQAVSEARLQELAAKLGAAGPLSEVIVAERGRN*
Ga0137405_13437351	3300015053	Vadose Zone Soil	MTTMAQLTIEIPDAPARRLAWLASEQKKKRRASGCGTTRVFTGAAAENLEEKYARFFQQSGLFVERLAEEQPRYQAVSEARLQELAAKLGAAGPLSEVIVAERGRN*
Ga0137405_134373511	3300015053	Vadose Zone Soil	MTRALWKEMTTMAQLTIEIPDAPARRLAWLASEQKKSVEQVAVEQLESLLEPAAENLEEKYARFFQQSGLFVERLAEEQPRYQAVSEARLQELLRSWEQRGLSLK*
Ga0137409_105969822	3300015245	Vadose Zone Soil	MVAWMFLIRTMTRALRKEVTAMAQLTIEIHDALARRLAWLASEQNKSVEQVAIEQLEALLEPAAENLEEQYERFFQQSGLFVERRAEDKPRYQAVSEKRLKELAAKLGAAGLLSEVIVAERGRT*
Ga0137409_106636292	3300015245	Vadose Zone Soil	ARKNVFKVPIRSMTRALWKEVTTMTQLTLEIPEALAQRLAWLASEQQKSVEQVVVEQLESLLAPAVENLEEKYARFFQQSGLFVERLAEEQARYQAVSEARLQELAAKLGAAGPLSEVIVAERGQN*
Ga0132256_1015291922	3300015372	Arabidopsis Rhizosphere	EALAQRLARLASEQHKSVEQVAVEQLESLLTPPATEGLEEKYEQFFQQSGLFVECLTEEKSRYHAVSEARLKALAAKLGAAGPLPEVIVAERGQN*
Ga0134083_103325741	3300017659	Grasslands Soil	MTAMTQLTIEIPDALAQRLAWLAAEQKKSVEQVAVEQLESLLTPAVEKLEEKYGRFFQQSGLFVERLAEEKQHSQTVSETRLKELAAKL
Ga0184637_103155451	3300018063	Groundwater Sediment	MTQLTIAIPDALARCLASLASEQQKSVEQVAVEQLASLLAPAVEHLEEKYERFCQESGLFVARLAEEKQHYQAVSEERLQELAAKLGAVGPLSAVIVDERGQH
Ga0184633_103868491	3300018077	Groundwater Sediment	MTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLEFLLGPAAEHQPAAEHLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAAKLGVAGPLSEVIVAERDRN
Ga0190265_122445402	3300018422	Soil	TQLTIEIPDALARRLAWLASERSKSVEQVAIEQLESLLEPATKNLEEQYERFFQQSGLFVERSAEEKPRYQAVSEARLKELAAKLGAVGPLSEVIIAERDRT
Ga0190268_101877252	3300018466	Soil	MTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLTSLLERATENLEERYERFFQQSGLFVERLAEEKSLYRAVSEARLKELAAKLGAAGPLSEVIVAERGQN
Ga0184646_11934672	3300019259	Groundwater Sediment	MTQLTIEIPDALARCLAWLASEQKKSVEQVAVEQRESLLEPAAEHLAEKYERFSQQSGLFVERLAEEKPHYQAVSEARLKELASLHHRSNLWGSAVGASSMGKAL
Ga0187893_107931572	3300019487	Microbial Mat On Rocks	MLQLTIEIPETLAQRLAWLATEQKKSVEQVVLERLVSLLELPVETLKEKYERFFKESGLFVETPEEEKRRHQPVSEERLKELAAKLGAAGPLSEVIIEERGGS
Ga0179594_102613081	3300020170	Vadose Zone Soil	MAQLTIEIHDALARRLAWLASEQNKSVEQVAIEQLEALLEPATENLEEQYERFFQQSGLFVERRAEDKPRYQAVSEKRLKELAAKLGAAGLLSEVIVAERGRT
Ga0222625_13212611	3300022195	Groundwater Sediment	MTQLTIEISDALARRLAWLASEQNKSVEQVAVEQLGALLESVAENLEEKYERFFQQSGLFVERLAKEKTRYQAVSEERLKELAAKLGAAGPLSEVIVAERGPN
Ga0212128_101212162	3300022563	Thermal Springs	MTQLTIEISDALARRLAWLASEQRKSVEHVAVEQLESVLEAAAGNLEEKYERFFQQTDLFVERPAEEQPQSRAVSEERLKELAAKRGAAGPLSDVIIAERGRH
Ga0212128_102106551	3300022563	Thermal Springs	MRQLTIEIPDVLAQRLAWLAAEQKKSVEQVALERLASLLEPPTENLQEQYERFFKESGLFIEVPEEEKRRYQPVSEERLRELAAKLGAAGPLSEVIIEERERS
Ga0207684_103547302	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTQLTIEISDALARRLAWLASEQKKSVAQVAIEQLESLLEPAAKNLEEKYARFFQQSGLFVERLAEEKQRYQAVSEERLKELAGKLGAAGPLSEVIVAERDLN
Ga0207646_100862241	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	QLTIEIPEALAQRLAWLAAEQKKSVEQVALEQLASLLEPPTENLAERYNRFFKESGLFAEVSEEEKQRYQPVSEERLKELAAKLGAAGPLSEVMIEERGRS
Ga0207703_104107742	3300026035	Switchgrass Rhizosphere	MTQLTIEIPEALARHLAWVASEQNKSVEQVAVEQLESLLAPAAENLGEKYARFFQQSGLFVERLAEEKPRYQAVSEARLKELAAKLGAAGPLSEVIVAERGQN
Ga0209874_10826092	3300027577	Groundwater Sand	MTQLTIEIPDALARRLARLASEQKKSVEQVAVEQLESLLEPTVENLAEKYARFFQQSGLFIEPLAEEKQRYQAVSEARLQELAAKLGAAGPLSEVIIAERDRH
Ga0209593_100051995	3300027743	Freshwater Sediment	MTQLTIEISGALAKHLAGLASEQKKSVEQVAVEQLASLLEPAAENLEDKYERFFQQSGLFVKRLGEEQQRYQAVSDERLKELAAKLGAAGPLSDVIVAERGQT
Ga0209180_100446752	3300027846	Vadose Zone Soil	MTQLTIEIPDALAQHLAWLASEQKKSVEQVAVEQLESLLESAAENLEEKYERFFQQSGLFVERLAEEKQHRQTVSETRLKELAAKLGAAGPLSEVIVEERGRH
Ga0209590_105392251	3300027882	Vadose Zone Soil	MTRALRREVTTVTQLTIEIPEALARRLAWLASEQKKSVEQVAVEQLESLLEPAAENLEEKYERFFQQSGLFVERLAAEQQRYQAVSAERLKELAAKLGAAGPLSEVIVAERDRH
Ga0209590_107880241	3300027882	Vadose Zone Soil	IPDALARRLAWLASEQKKSVEQVAVEQLESLLAPAAEKLEEKYARFFQQSGLFAERLAEEKPRYQAVAEARLQELAAKLGAAGPLSEVIVAERGRN
Ga0209590_109507961	3300027882	Vadose Zone Soil	LARRLAWLASEQKKSVEQVAVEHLESLLAPAAEKLEEKYARFFQQSGLFVERLAEEKPRYQAVSEERLQALAAKLGAAGPLSEVIVAERG
Ga0209382_107185623	3300027909	Populus Rhizosphere	MTQLTIDIPEAVARHLARLASEQNKSVEQVAIEQLELLLGTAPANLGEHYERFFRQSGLFAGRLAEEKLRYQAVSEERLRELAAKLGRVGPLSEVIMAERDRT
Ga0209382_113151922	3300027909	Populus Rhizosphere	MTQLTIEIPEALARRLAWLASEQKKSVEQVAVEHLESLLEPAPANLEEKYERFFQQSGLFVEGLTAEKPCYQAASEARLKELAAKLGAAGPLSELIVAERDRL
Ga0209382_120624612	3300027909	Populus Rhizosphere	MIHLTLEIPDALARHLAWLASAQKKSVEQVAVEQLESLLEPAAESLEEKYARFFQQSGLFVERLAEEKQRYQAISEARLQELAAKLGAAGPLSDVIVAERGQH
Ga0268265_120664012	3300028380	Switchgrass Rhizosphere	MTQLTIEIPEALARRLAWLASEQNKSVEQVAVEQLESLLAPAAENLGEKYARFFQQSGLFVERLAEEKPRYQAVSEARLKELVAKLGAAGPLSEVIVAERGQN
Ga0299907_101524881	3300030006	Soil	MTQLTIEIPDALARRLASLALEQNKSVEQVCVEQLASLLLEPAGENLEEKYERFFQHSGLFTERSAEEKQRYQAVSEERCKELAAKLGAAGPLSEVIVAERGRN
Ga0247647_11766001	3300030570	Soil	TLEIPEALARRLAWLASEQKKSVEQVAIEQLESLLEPAARNLEEKYKRFFQQSDLFVERLAAEQQRYQAVSEERLQELAAKLGAAGPLSEVIIAERDRH
Ga0247659_11366791	3300030600	Soil	MIQLTLEIPEALARRLAWLASEQKKSVEQVAIEQLESLLEPAARNLEEKYKRFFQQSDLFVERLAAEQQRYQAVSEERLQELAAKLGAAGPLSEVIIAERDRH
Ga0268386_107792131	3300030619	Soil	MTQLTIEIPDAVARRLARLASEQNKSVEQVVVEQLASLLEPGGENLEEQYERFFQQSGLFVERLAVVKQRYQAVSEERLKELAAKLGAAGPLSEVIVAERGRN
Ga0302046_112810432	3300030620	Soil	MTQLTIEIPDALARRLVWLASEQKKSVEQVAVEQLESLLEPVAESLEEKYARFFQQSGLFVERLAEEKQRYQVVSEERLKELAAKLGAAGPLSEVIVAERDRN
Ga0102757_112822881	3300030785	Soil	AWLASEQKKSVEQVAAEQLTSLLEPAAENLEGKYERFFQQTGLFVERLAEEKPRYQAVSEERLKELAAKLGAAGPLSEVIVAERGRT
Ga0308206_10435501	3300030903	Soil	KEVAAMTQLTIEIPDALARRLAWLATEQKKSVEQVAVEQLESLLEPAVENLEEKYERFFQQSGLFVERLAEEKPRYQAVSEERLQELAAKLGAAGPLSKVIVAERGRN
Ga0308197_101767112	3300031093	Soil	VTAMTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAEHLEEKYAQFFQQSGLFVERLAEEKPRYQAVSEARLKELAAKLGAAGPLSEVIVAERGLH
Ga0308187_100623362	3300031114	Soil	MTQLTIEIPDALARRLAWLASEQKKSVEQVAVEQLESLLEPAAEKLEEKYARFFQQSGLFVERLAEEKLRYHAVSEARLKELAAKLGAAGPLSEVIVVERDRH
Ga0307416_1026346701	3300032002	Rhizosphere	TQLTIEIPDALARRLARIASEQNKSVEQVCVEQLASLLLEPAGQNLEEKYGRFFQQSGLFVERLEEEKQRYQDVSEERLKELAAKLGAAGPLSEVIVAER
Ga0370546_032063_160_504	3300034681	Soil	MTRALWKEVTTMTQLTLEIPEALAQRLAWLASEQKKSVEQVAAEQLASLLEPAAENLEGKYARFFQQSGLFVERLAEEKLRYHAVSEARLKELAAKLGAAGPLSEVIVVERDRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062596

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences