Basic Information | |
---|---|
Family ID | F062591 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 130 |
Average Sequence Length | 39 residues |
Representative Sequence | VGLGDVLFGRKKLKGANLERLFALSTAQITLETELGLKP |
Number of Associated Samples | 121 |
Number of Associated Scaffolds | 130 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 39.23 % |
% of genes near scaffold ends (potentially truncated) | 98.46 % |
% of genes from short scaffolds (< 2000 bps) | 94.62 % |
Associated GOLD sequencing projects | 121 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.51 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (67.692 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.769 % of family members) |
Environment Ontology (ENVO) | Unclassified (25.385 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (48.462 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.33% β-sheet: 0.00% Coil/Unstructured: 65.67% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Groundwater Sediment Freshwater Lake Soil Polar Desert Sand Natural And Restored Wetlands Soil Groundwater Sediment Soil Soil Vadose Zone Soil Tropical Forest Soil Serpentine Soil Grasslands Soil Terrestrial Surface Soil Soil Soil Agricultural Soil Permafrost Soil Grasslands Soil Forest Soil Hardwood Forest Soil Soil Soil Rice Paddy Soil Permafrost Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Soil Groundwater Sand Sediment Soil Arabidopsis Rhizosphere Avena Fatua Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Arabidopsis Rhizosphere Avena Fatua Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
AP72_2010_repI_A001DRAFT_10674911 | 3300000893 | Forest Soil | VGLADVLFGRKKLKGPAGERLFAISTARITLESELD |
C688J14111_101589241 | 3300001305 | Soil | VGLRDVLFGRKQLKEAAGERLFAISTARITLETELD |
Ga0055469_103079242 | 3300003999 | Natural And Restored Wetlands | MGLWNILSGGRKLRGPKRDRLFALSTAQVTLEGELGLRPAG |
Ga0062590_1009721432 | 3300004157 | Soil | LGLGDVLFGRKKLKGANLDRLFALSTAQITLETELGLKPAGVA |
Ga0062590_1019232841 | 3300004157 | Soil | VGLRDVLLGRKQLKDAAGERLFAISTARITLETELDLKPA |
Ga0063356_1041417871 | 3300004463 | Arabidopsis Thaliana Rhizosphere | LGLADVLFGRKKLKAPEKERLFALATAGVTLSVELGLHAVA |
Ga0066809_100976212 | 3300005168 | Soil | LGLGDVLFGRKRLRRANVDRLFALSTAQVTLQAELGLTSAGVAT |
Ga0066680_106041452 | 3300005174 | Soil | MGLTDILFGRKKLKGPAEERLFALSTAAVTLQTDLNLTTA |
Ga0068869_1001329623 | 3300005334 | Miscanthus Rhizosphere | LGLGNVLFGRKKLKDAAGERLFAISTARITLEAELGLKST |
Ga0068869_1021141991 | 3300005334 | Miscanthus Rhizosphere | LGLRDILSGRKKLKDPARERLFAISTARITLQTELDLKPS |
Ga0066682_109668471 | 3300005450 | Soil | VGLANVLFGRKKLKAPARERLFALSTAGVTLDTELGLKPVSAAVVFK |
Ga0070697_1013689601 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | LGLTDVLFGRKRLKPPAEDRLFALATATVTLQTELGLKPAGV |
Ga0070732_101954371 | 3300005542 | Surface Soil | LGLGDVLFGRKKLKAPAAERLFAISTAAVTLDTACSL |
Ga0066706_113013892 | 3300005598 | Soil | MGLTDILFGRKKLKGPAEERLFALSTAAVTLQTDLNLTTAGVA |
Ga0068856_1007890652 | 3300005614 | Corn Rhizosphere | VGLRDVLFGRKKLKDPARERLFAISTARITLETEL |
Ga0075269_100236072 | 3300005905 | Rice Paddy Soil | VPLLDVLFGRKKLKDASEERIFALSTAQVTLQTELGL |
Ga0066659_104588802 | 3300006797 | Soil | LGLRDVLFGRKKVKDPVRERLFAISTARITLESELDL |
Ga0079220_104940362 | 3300006806 | Agricultural Soil | VGLTDVLFGRKKLKGPNEDSLFALTTACVTLQSELGLK |
Ga0075431_1004389181 | 3300006847 | Populus Rhizosphere | VGLTDVLFGGRKRLKGAKLDKLFALSTAQITLETELGL |
Ga0075433_111586351 | 3300006852 | Populus Rhizosphere | VGFTDVLFGRKKLKSPAGERLFALSTARVTLDAELGLKS |
Ga0075436_1013760861 | 3300006914 | Populus Rhizosphere | VGLLDVLFGRKRLKDASVERLFALSTAQVTLDVDLG |
Ga0105244_105048112 | 3300009036 | Miscanthus Rhizosphere | LGLRDVLFGRKKLKDPARERLFAISTARITLETEL |
Ga0099829_116286391 | 3300009038 | Vadose Zone Soil | MGLGNVLFGRKQLKGPNEDTLFALTTACVTLQTELGLTPAGVGAVTYKS |
Ga0105240_112293442 | 3300009093 | Corn Rhizosphere | MGLTDVLFGRKKLKGPNQDSLFALTTACVTLQTEL |
Ga0105240_121462452 | 3300009093 | Corn Rhizosphere | VGLTDVLFGRKKLKGPNEDSLFALTTACVTLQSELGLKPA |
Ga0075418_102939983 | 3300009100 | Populus Rhizosphere | LGLADVLFGRKKLKKADEQKLFAIATARITLETELGLK |
Ga0066709_1022306432 | 3300009137 | Grasslands Soil | VGLTDVLFGRKRLKGAARDRLFALSTARVTLELEGVK |
Ga0066709_1045462832 | 3300009137 | Grasslands Soil | MGLRDVLFGRNKLKDPARERLFAISTARITMQAELNLK |
Ga0105243_101409913 | 3300009148 | Miscanthus Rhizosphere | LGLGNVLFGRKKLKDAAGERLFAISTARITLETELELRP |
Ga0114970_101754371 | 3300009163 | Freshwater Lake | VGVFDVMFGRKRLKGAAQDRLFALATAQVTLEVELALKP |
Ga0105858_12417001 | 3300009661 | Permafrost Soil | VALRDVLFGRKKLPGPREDRLFALSTASVTLETECGLTTAG |
Ga0105080_10440522 | 3300009797 | Groundwater Sand | VGLGSILFGGRKRLKGAKLDKIFALSSAQVQLEAELGLK |
Ga0105067_10034783 | 3300009812 | Groundwater Sand | VGLTDVLFGGRKRLKGARLDKLFALSTAQITLQTELGLDSAGVAAVVFK |
Ga0105058_11766001 | 3300009837 | Groundwater Sand | VGLGNILFGGRKRLKGAKLDKIFALSSAQVQLEAELGLKPAGVAAV |
Ga0126313_104862902 | 3300009840 | Serpentine Soil | LGLTNVLFGRKKLKKAVQERLFALATARISLETELGLK |
Ga0126309_100051941 | 3300010039 | Serpentine Soil | VGLTDILFGRKRLKGAKLDKLFALSTAQVTLDAEL |
Ga0126380_101147393 | 3300010043 | Tropical Forest Soil | VGLADVLFGRKKLKGPAGERLFAISTARITLETELD |
Ga0126310_101133701 | 3300010044 | Serpentine Soil | VGLTDILFGRKKLKGAVREQLFAISTAHVTMEVELGLRFAR |
Ga0127481_10379911 | 3300010101 | Grasslands Soil | VGLADILLGRKKLKGPAQDRLFALSTARVTLDAEL |
Ga0127446_11035002 | 3300010104 | Grasslands Soil | VGLGDVLFGRKKLKGANLDRLFALSTAQITLETGTSLRTGVRS* |
Ga0127503_108344241 | 3300010154 | Soil | VGLRDVLSGRKKLQDPAQDRLFAISTARITLETDLDLKSAGS |
Ga0134109_105054241 | 3300010320 | Grasslands Soil | VGLRDVLLGRKKLQAPAGERLFAISTARITLATELDL |
Ga0126376_127161312 | 3300010359 | Tropical Forest Soil | VGLADVLFGRKKLKGPAGERLFAISTARITLETELDLK |
Ga0126376_128912902 | 3300010359 | Tropical Forest Soil | VGLGNILFGRKKLKAAASERLFALSTAQVTLDVELGLK |
Ga0126379_116580381 | 3300010366 | Tropical Forest Soil | VGLADVLFGRKKLKGPNEDSLFALTTACVTLQTELGLTP |
Ga0138514_1001581262 | 3300011003 | Soil | LGLGNVLFGRKKLKDAAGERLFAISTARITLEAELGLK |
Ga0137325_10301681 | 3300011415 | Soil | VGLGDVLFGRKRLKGAKLDKLFALSTAQITLETELGLRTAGV |
Ga0120146_10340561 | 3300011992 | Permafrost | LGFRDVLFGRKQLKEAAAERLFALSTARVTLDSD* |
Ga0120191_100479551 | 3300012022 | Terrestrial | MGLGDVLFGRKKLKEPSGDRIFALSTARITLETELGL |
Ga0136632_104221802 | 3300012093 | Polar Desert Sand | VGFTDILFGRKRLKEASGERLFALSTARITLETDLGLTPAESGLKHTAAV |
Ga0136618_102411301 | 3300012188 | Polar Desert Sand | VGFTDILFGRKRLKEASGERLFALSTARITLETDL |
Ga0137365_103690812 | 3300012201 | Vadose Zone Soil | VGLADVLFGRKKLKDPARARLFALRTARVTLEAERGLKPAGV |
Ga0137377_111637911 | 3300012211 | Vadose Zone Soil | LGLRDVLSGRKQLKAPAAERLFAMSTAAITLDVSCGLR |
Ga0150985_1223647091 | 3300012212 | Avena Fatua Rhizosphere | VGLTDILFGRKRLSKPKADRLFALSTAAITLDTELG |
Ga0137370_109574071 | 3300012285 | Vadose Zone Soil | VGLTDVLFGRKKLKGPSEDSLFALTTACVTLQTELGLKP |
Ga0137372_107533001 | 3300012350 | Vadose Zone Soil | VGLRDVLFGRKQLKAAKGERLFALSTAAVTLDVAL |
Ga0134046_10368891 | 3300012386 | Grasslands Soil | VGLADILLGRKKLKGPAQDRLFALSTARVTMDTELGLK |
Ga0150984_1047689862 | 3300012469 | Avena Fatua Rhizosphere | VGLGDVLFGRRKLKEASRERIFALSTATITLETELG |
Ga0150984_1056477081 | 3300012469 | Avena Fatua Rhizosphere | LGFTDVLFGRKKLKSPAQERLFALSTARVTLEGELGLKSAGAGG |
Ga0136613_100747831 | 3300012681 | Polar Desert Sand | VGFTDILFGRKRLKEASGERLFALSTARITLETDLG |
Ga0157308_100852531 | 3300012910 | Soil | VGLRDVLFGRKQLKDAAGERLFAISTARITLETELDLKPAGAA |
Ga0157373_104996772 | 3300013100 | Corn Rhizosphere | VGLADVLFGRKKLKGPAGERLFAISTARITLEIELDL |
Ga0157378_126205451 | 3300013297 | Miscanthus Rhizosphere | LGLGDVLFGRKKLKGANLDRLFALSTAQVTLETELGLKPDRVAA |
Ga0157375_128791022 | 3300013308 | Miscanthus Rhizosphere | LGLGDVLFGRKKLKSANLDRLFALSTARITLEAELGLKPDDV |
Ga0120172_10649702 | 3300013765 | Permafrost | VGLKDVLFGRKQLKDAAAERIFALSTAAVTLETEL |
Ga0134081_100113284 | 3300014150 | Grasslands Soil | MGFTDVLFGRKKLKGPAQERMFALSTARVTLDAELGLK |
Ga0132256_1002540031 | 3300015372 | Arabidopsis Rhizosphere | VGLGNILFGRKKLSGAKLDKLFALPSAAVTMDAELGLRSDRVAAV |
Ga0132257_1014552741 | 3300015373 | Arabidopsis Rhizosphere | LGLGDVLFGRKKLKGANLDRLFALSTAQVTLETELGLKPDR |
Ga0134069_12292431 | 3300017654 | Grasslands Soil | VGLGNILFGRKKLKPAASERLFALSTAQVTLEVELGLKSAGK |
Ga0180121_102297101 | 3300017695 | Polar Desert Sand | VGLGDILFGRKKLKEAVPEKLFALATACVTLEAELGLKP |
Ga0136617_100777414 | 3300017789 | Polar Desert Sand | VGLRDLLFGRSKLKEASPEQLFALSTARVTLETELGLRSSGRA |
Ga0184618_100537111 | 3300018071 | Groundwater Sediment | MGLTDVLFGRKKLKKADEQRLFAITTARITLETDLG |
Ga0184635_103111891 | 3300018072 | Groundwater Sediment | VGLGNILFGRKKLSGAKLDKLFALPSAAITMDAELGLR |
Ga0190269_102051902 | 3300018465 | Soil | VGLGNVLFGRKKLKGANLDKLFALSTAAITLETEGNLKPAGV |
Ga0190271_112225141 | 3300018481 | Soil | VGLTDVLFGGRKRLKGAKLDKLFALSTAQVTLQAELGLK |
Ga0190264_100807201 | 3300019377 | Soil | VGLGNVLFGRKKLKKAAGDKLFALSAARVTLEVEL |
Ga0193738_11242412 | 3300020020 | Soil | VGFTDVLFGRKKLREAQGERLFAISTARVTLDVELG |
Ga0210381_102156391 | 3300021078 | Groundwater Sediment | LGLADVLLGRKKLKSPAGEKLFALSTARVTLETEL |
Ga0247801_10648051 | 3300023064 | Soil | LGLGDVLFGRKKLKGASLDRLFALSTAQITLETELGLKPDRVAAVVFK |
Ga0247799_10487001 | 3300023072 | Soil | LGLTDVLFGRKRLKKAVQEKLFAITTARITLETDLGLK |
Ga0209642_103316682 | 3300025167 | Soil | VGLGNILFGRKKLKEAAPEQLFALATACVTLDVELGLKP |
Ga0209323_102126353 | 3300025314 | Soil | VGLGNILFGKKRLGRANLDKLFALSTAEITLKTALG |
Ga0209751_113503012 | 3300025327 | Soil | VGLGDILFGKKRLGGAKLDKLFALSTAHVTLQAEL |
Ga0207688_101603653 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | LGLGDVLFGRKKLKSANLDRLFALSTARITLEAELG |
Ga0207652_112675362 | 3300025921 | Corn Rhizosphere | VGLADVLFGRKKLKGPAGERLFAISTARITLETEL |
Ga0207700_102889443 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | VGLRDVLFGRKQLKDAAGERLFAISTARITLETELDLKPAGS |
Ga0207670_113615902 | 3300025936 | Switchgrass Rhizosphere | LGLGDVLFGRKKLKGANLDRLFALSTAQITLETELGLKPDR |
Ga0207711_102282201 | 3300025941 | Switchgrass Rhizosphere | VGLRDVLFGRKQLKDAAGERLFAISTARITLETELDLRSTGAAG |
Ga0207661_119929852 | 3300025944 | Corn Rhizosphere | MGLGDVLFGRKKLKGANLDRLFALSTAQITLQAELGLK |
Ga0207676_121272671 | 3300026095 | Switchgrass Rhizosphere | LGLGDVLFGRKKLKGANLDRLFALSTAQVTLETELGLK |
Ga0209470_13475681 | 3300026324 | Soil | VGLGDVLFGRKKLKEPAADRLFAITTAAVTLDVECGLK |
Ga0209886_10091191 | 3300027273 | Groundwater Sand | VGLTDVLFGGRKRLKGARLDKLFALSTAQITLQTELGLD |
Ga0207601_1002853 | 3300027461 | Soil | LGLRDVLFGRKKLKDAAPERVFAISTARITLETELNLK |
Ga0209887_10518002 | 3300027561 | Groundwater Sand | VGLGDVLFGRKKLKGAKPDKLFALSTAQVTLETELDL |
Ga0209818_10488502 | 3300027637 | Agricultural Soil | MGLTDVLFGRKKLKEAQGERLFALSTARVTLDVELGLRPGKR |
Ga0209689_13731491 | 3300027748 | Soil | LGLRDILSGRKRLKGPAAERLFALSTAAITLEVDCG |
Ga0209814_101047451 | 3300027873 | Populus Rhizosphere | VGFTDVLFGRKKLKSPAGERLFALSTARVTLDAELGLK |
Ga0207428_101960401 | 3300027907 | Populus Rhizosphere | VGFTDVLFGRKKLKSPAGERLFALSTARVTLDAELGLKSAGSG |
Ga0307276_101174022 | 3300028705 | Soil | VGLTDVLFGRKKLKSPAQERLFALSTARVTLEGELGLKSAGAG |
Ga0307285_101818912 | 3300028712 | Soil | LTDVLFGRKKLAKAQQEKLFAISTARITLETEFGLK |
Ga0307313_100013366 | 3300028715 | Soil | VGLGNVLFGRKKLKGANLDKLFALSTAAITLETELGLKPAGV |
Ga0307298_100406701 | 3300028717 | Soil | VGLGNVLFGRKKLKDASGERLFAISTARITLETELELR |
Ga0307301_100713761 | 3300028719 | Soil | MGLGNVLFGRKKLKGANLDKLFALSTAAITLETESNLKPAGVAA |
Ga0307317_101266601 | 3300028720 | Soil | VGLRDVLLGRKKLQDPARERLFAISTARITLETEL |
Ga0307319_102308261 | 3300028722 | Soil | VGLGNIIFGRKKLSGAKLDKLFALPSAAVTMDAELGLRSDGV |
Ga0307320_102385681 | 3300028771 | Soil | LGLGNVLFGRKKLKGANLDKLFALSTAAITLETEGNLKPAG |
Ga0307282_100068571 | 3300028784 | Soil | VGLGNVLFGRKKLKGANLDKLFALSTAAITLETELG |
Ga0307282_102937402 | 3300028784 | Soil | LGLADVLLGRKKLKSPAGEKLFALSTARVTLEAELGL |
Ga0307281_102685282 | 3300028803 | Soil | VALTDVLFGRKKLKEAKGERLFALSTARVTLEVELG |
Ga0307296_104185381 | 3300028819 | Soil | LGLGNVLFGRKKLKDAAGERLFAISTARITLETELGLKPTG |
Ga0307296_106610801 | 3300028819 | Soil | LGLADVLLGRKKLKSPAGEKLFALSTARVTLETELGL |
Ga0307310_102318472 | 3300028824 | Soil | LGLRDVLSGRKKLQEPARERLFAISTARITLETELDLKPA |
Ga0307300_1000082310 | 3300028880 | Soil | MGLGDVLFGRKKLKGAKLDKLFALSTAQVTLESELG |
Ga0299907_103567802 | 3300030006 | Soil | VALTDILFGRKRLKGAKLEKLFALSTARITLEVELGLKSAGVA |
Ga0268386_106532862 | 3300030619 | Soil | VALTDILFGRKRLKGAKLEKLFALSTARITLEVELGL |
Ga0308205_10276482 | 3300030830 | Soil | VGLRDVLFGRKQLKGPADERLFALATAQVTLETEL |
Ga0308178_10201661 | 3300030990 | Soil | LGLRDVLFGRKKLKDPAQERLFAISTARITLQTELD |
Ga0308190_10414001 | 3300030993 | Soil | VGLADILLGRKKLKGPAQDRLFALSTARVTLDTEL |
Ga0299914_109622092 | 3300031228 | Soil | VALTDILFGRKRLKGAKLEKLFALSTARITLEVELGLKP |
Ga0299914_115328922 | 3300031228 | Soil | VGLGNILFGKKKLSGAKLDKLFALSTAHVAMQAELGLRSAGGA |
Ga0299913_112694192 | 3300031229 | Soil | VALTDILFGRKRLKGAKLEKLFALSTARITLEVELGLK |
Ga0308186_10282212 | 3300031422 | Soil | LGLGNVLFGRKKLKDSSGERLFAISTARITLETELDLKS |
Ga0170818_1075608901 | 3300031474 | Forest Soil | LGLGDVLFGRKKLKAPAAERLFAITTAAVTLDTECSLQ |
Ga0307477_107777712 | 3300031753 | Hardwood Forest Soil | LFGRKKLKGPAEDRLFALATACVTLDTECSLKPAGVAAVTY |
Ga0310900_110144142 | 3300031908 | Soil | LGDVLFGRKKLKGANLDRLFALSTAQITLQTELNLKPDRVAAVV |
Ga0308175_1013281951 | 3300031938 | Soil | VGLGDVLFGRKKLKGANLERLFALSTAQITLETELGLKP |
Ga0307470_104863912 | 3300032174 | Hardwood Forest Soil | LGLGNVLFGRKKLKDAAGERLFAMSTARITLETELGLKPT |
Ga0247829_104181741 | 3300033550 | Soil | VGLRDVLFGRKQLKDAAGERLFAISTARITLETELDLRSTG |
Ga0364945_0186768_2_139 | 3300034115 | Sediment | VGLGNVLFGRKKLKKAAGDKLFALSAGRVTLEVELGLKAAGTAAVL |
Ga0370548_062219_2_109 | 3300034644 | Soil | LGLADVLLGRKKLKSPAGEKLFALSTARVTLETELG |
⦗Top⦘ |