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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F062128 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 131 |
| Average Sequence Length | 49 residues |
| Representative Sequence | QLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPHDRSLRR |
| Number of Associated Samples | 111 |
| Number of Associated Scaffolds | 131 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 1.53 % |
| % of genes near scaffold ends (potentially truncated) | 96.95 % |
| % of genes from short scaffolds (< 2000 bps) | 86.26 % |
| Associated GOLD sequencing projects | 104 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.22 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (76.336 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.030 % of family members) |
| Environment Ontology (ENVO) | Unclassified (29.008 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.802 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 28.57% β-sheet: 0.00% Coil/Unstructured: 71.43% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.22 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 131 Family Scaffolds |
|---|---|---|
| PF07690 | MFS_1 | 32.82 |
| PF00156 | Pribosyltran | 3.82 |
| PF13511 | DUF4124 | 2.29 |
| PF00692 | dUTPase | 0.76 |
| PF02441 | Flavoprotein | 0.76 |
| COG ID | Name | Functional Category | % Frequency in 131 Family Scaffolds |
|---|---|---|---|
| COG0717 | dCTP deaminase | Nucleotide transport and metabolism [F] | 0.76 |
| COG0756 | dUTP pyrophosphatase (dUTPase) | Defense mechanisms [V] | 0.76 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 76.34 % |
| All Organisms | root | All Organisms | 23.66 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 16.03% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 12.98% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 10.69% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 6.11% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 5.34% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 5.34% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 5.34% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 4.58% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.82% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.82% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.05% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.29% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 2.29% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 2.29% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 1.53% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 1.53% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 1.53% |
| Ectomycorrhiza | Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza | 1.53% |
| Host-Associated | Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated | 1.53% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.76% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.76% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.76% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.76% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.76% |
| Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 0.76% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.76% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.76% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.76% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.76% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.76% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001454 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 | Environmental | Open in IMG/M |
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300005994 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 | Environmental | Open in IMG/M |
| 3300006050 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006172 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 | Environmental | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009643 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 | Environmental | Open in IMG/M |
| 3300009709 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
| 3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014164 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG | Environmental | Open in IMG/M |
| 3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
| 3300014169 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG | Environmental | Open in IMG/M |
| 3300014200 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG | Environmental | Open in IMG/M |
| 3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
| 3300014489 | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG | Environmental | Open in IMG/M |
| 3300014493 | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300015264 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300016730 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017935 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 | Environmental | Open in IMG/M |
| 3300018017 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40 | Environmental | Open in IMG/M |
| 3300018034 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10 | Environmental | Open in IMG/M |
| 3300018035 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10 | Environmental | Open in IMG/M |
| 3300018037 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10 | Environmental | Open in IMG/M |
| 3300018043 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 | Environmental | Open in IMG/M |
| 3300019185 | Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019787 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction) | Environmental | Open in IMG/M |
| 3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300021086 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300024290 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08 | Environmental | Open in IMG/M |
| 3300027000 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes) | Environmental | Open in IMG/M |
| 3300027698 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028021 | Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 | Environmental | Open in IMG/M |
| 3300028036 | Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 | Host-Associated | Open in IMG/M |
| 3300028037 | Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 | Environmental | Open in IMG/M |
| 3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028138 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25 | Environmental | Open in IMG/M |
| 3300028146 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23 | Environmental | Open in IMG/M |
| 3300028762 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3 | Environmental | Open in IMG/M |
| 3300028775 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2 | Environmental | Open in IMG/M |
| 3300028789 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3 | Environmental | Open in IMG/M |
| 3300028801 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3 | Environmental | Open in IMG/M |
| 3300028806 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1 | Environmental | Open in IMG/M |
| 3300028879 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3 | Environmental | Open in IMG/M |
| 3300029636 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300029882 | III_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300029883 | I_Bog_E2 coassembly | Environmental | Open in IMG/M |
| 3300029911 | III_Bog_N2 coassembly | Environmental | Open in IMG/M |
| 3300029939 | I_Bog_E3 coassembly | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300029990 | I_Fen_N2 coassembly | Environmental | Open in IMG/M |
| 3300029999 | I_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030013 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3 | Environmental | Open in IMG/M |
| 3300030020 | II_Bog_N1 coassembly | Environmental | Open in IMG/M |
| 3300030399 | II_Palsa_E2 coassembly | Environmental | Open in IMG/M |
| 3300030503 | III_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030617 | II_Palsa_N2 coassembly | Environmental | Open in IMG/M |
| 3300030693 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2 | Environmental | Open in IMG/M |
| 3300030740 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly | Environmental | Open in IMG/M |
| 3300030741 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly | Environmental | Open in IMG/M |
| 3300030841 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030906 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3 | Environmental | Open in IMG/M |
| 3300031028 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Host-Associated | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Host-Associated | Open in IMG/M |
| 3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
| 3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| 3300033486 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A | Environmental | Open in IMG/M |
| 3300033824 | Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9 | Environmental | Open in IMG/M |
| 3300034199 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14 | Environmental | Open in IMG/M |
| 3300034282 | Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI20204J15135_10142462 | 3300001454 | Arctic Peat Soil | FESWNEHLWDDLIEAADAPEDWSGAIDVESEDLGREFEDNARSAWSNPHERSMRR* |
| JGI12635J15846_108503192 | 3300001593 | Forest Soil | GTVAEMEFDSWNEQLLDELIDAAHAPEDWSGAVDVEAEDLDREFEDNARTLWSLPNDRSLRR* |
| Ga0062384_1000935461 | 3300004082 | Bog Forest Soil | EMEFDSWNEQLLDELIDGADAPEDWSGAVDVESEDLDREFEDNARGLWSSPNDRSLRR* |
| Ga0062387_1000094605 | 3300004091 | Bog Forest Soil | EMEFDSWNEQLLDELIDAADAPEDWSGAVDVESEDLDREFEDNARGLWSTPNDRSLRR* |
| Ga0062387_1007055991 | 3300004091 | Bog Forest Soil | SWNEHLWDDLIEVADAPEDWSGAIDVEAEDLGREFEDNSRTAWSNPHDRSLRR* |
| Ga0062389_1034697391 | 3300004092 | Bog Forest Soil | DELIDAADAPEDWSGAIDVEAEDLDRDFEDNARASWSSSHDRSLRR* |
| Ga0062386_1001935941 | 3300004152 | Bog Forest Soil | AADAPEDWSGAVDVEAEDLDRDFEDNARGLWSTPNDRSLRR* |
| Ga0062388_1002497932 | 3300004635 | Bog Forest Soil | QLLDDVIEAADAPEDWSGAIDVETEDLDRDFEDNARTLWSDPHDRSLRR* |
| Ga0062388_1019945782 | 3300004635 | Bog Forest Soil | SWNEQLLDELIDAADAPEDWSGAVDVESEDLDREFEDNARGLWSTPNDRSLRR* |
| Ga0070762_100741463 | 3300005602 | Soil | EDWSGAVDMEAEDLDRDFEDNARGSWSIPNDRSLRR* |
| Ga0070763_107799021 | 3300005610 | Soil | AADAPEDWSGAIDVEAEDLGREFEDNARTSWSSHHDRSMRR* |
| Ga0066789_100297284 | 3300005994 | Soil | DWSGAVDVESEDLDRDFEDTPRTAWSTPQDRALRR* |
| Ga0075028_1003315621 | 3300006050 | Watersheds | EMDFDSWNEQLLDRMLDAADAPEDWSGAVDVEAEDLDRDFEDNARTAWSTPEDRSIRR* |
| Ga0075030_1002221292 | 3300006162 | Watersheds | FDSWNEQLLDDIIEAADAPEDWSGAVDVEAEDLDREFEDNARTSWSDPHDRSLRR* |
| Ga0075018_105135502 | 3300006172 | Watersheds | PEDWSGAVDMEAEDLDREFEDTARSLWSSPHDRSMRR* |
| Ga0105240_111171681 | 3300009093 | Corn Rhizosphere | MEYDSWNDQLLDELIDPADAPEDWSGAVDVEAEDLDREFEDNARSLWSIPSDRSLRR* |
| Ga0116110_11654062 | 3300009643 | Peatland | QMLDAADAPEDWSGAIDVETEDLDRDFEDNARMAWSTPQDRSLRR* |
| Ga0116227_100204831 | 3300009709 | Host-Associated | IDTADAPEDWSGAVDVEAEDLHREFEDNARGAWSTPRDRSVRREPR* |
| Ga0116227_109228251 | 3300009709 | Host-Associated | DFDAWNEQLFDRMLDAADAPEDWSGAVDMEAEDLGREFEDNARTQWSLPRDRASRRY* |
| Ga0074046_109026041 | 3300010339 | Bog Forest Soil | IDAADAPEDWSGAVDVEAEDLDREFEDNSRTAWSSPQDRSLRR* |
| Ga0136449_1020375081 | 3300010379 | Peatlands Soil | GDIEVASAPEDWSGSVDIGPEDLDREFEDHARAAWTDPNGPKL* |
| Ga0150983_156876412 | 3300011120 | Forest Soil | MDFDAWNEQLLDHMLDAADAPEDWSGAVDVEVEDLDRDFEDSARTAWSLPQDRSLRR* |
| Ga0137391_106515551 | 3300011270 | Vadose Zone Soil | EVDFDSWNEQLLDELIDAADAPEDWSGAVDVETEDLDREFEDNARSLWSTPYDRSLRR* |
| Ga0137391_112434542 | 3300011270 | Vadose Zone Soil | EDWSGAVDVEAEDLDREFEDNARSLWSTPYDRSLRR* |
| Ga0137388_103297571 | 3300012189 | Vadose Zone Soil | TVTEVDFDSWNEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPHDRSLRR* |
| Ga0137385_105573383 | 3300012359 | Vadose Zone Soil | MLDAADAPEDWSGAVDVESEDLDRDFEDTPRTAWSTPEDRSLRR* |
| Ga0137360_118791191 | 3300012361 | Vadose Zone Soil | ADAPEDWSGAIDVESEDLERDFEDTPRTAWSTPEDRSLRR* |
| Ga0137390_111834431 | 3300012363 | Vadose Zone Soil | LLDRMLDAADAPEDWSGAVDVESEDLDRDFEDTPRTAWSTPQDRSLRR* |
| Ga0137413_102500161 | 3300012924 | Vadose Zone Soil | EHLRDDLIEVADAPEDWSGAVDVEAEDLGREFEDNARTAWSNPHERTLRR* |
| Ga0137416_103545192 | 3300012927 | Vadose Zone Soil | DFDSWNEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPYDRSMRR* |
| Ga0137416_121792432 | 3300012927 | Vadose Zone Soil | FDAWNEQLLDRMLDVADAPEDWSGAVDVESEDLDRDFEDTPRTAWSTPEDRSLRR* |
| Ga0137404_107264361 | 3300012929 | Vadose Zone Soil | APEDWSGAVDVEAEDLGREFEDNARTLWSNPRERSLRR* |
| Ga0181532_100778671 | 3300014164 | Bog | EQLLDDLIDAADAPEDWSGAVDVEAEDLDREFEDNPRSAWSIPQDRSLRR* |
| Ga0181523_104304462 | 3300014165 | Bog | FDAWNEQLLDELIDAADAPEDWSGAVDMEAEDLDREFEDNVRSAWSNPQDRSLRR* |
| Ga0181523_105897591 | 3300014165 | Bog | WSGAVDVEAEDLDREFEDNPRSAWSSPQDRSLRR* |
| Ga0181531_101984932 | 3300014169 | Bog | TEMEFDSWNEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNTRSLWSTPNDRSLRR* |
| Ga0181526_110043951 | 3300014200 | Bog | VTEIEFDSWNEQLLDELIDVANAPEDWSGAVDVEAEDLDREFEDNARTAWSTPQDRSLRR |
| Ga0181537_108289921 | 3300014201 | Bog | PEDWSGAVDVEAEDLDREFEDNTRTAWSSPQDRSLRR* |
| Ga0182018_104797432 | 3300014489 | Palsa | VTEVEFDSWNEQLLDDLIDAADAPEDWSGAVDVEAEDLDREFEDNARSAWSSPQDRSLRR |
| Ga0182016_106239891 | 3300014493 | Bog | EAPEDWSGAIDVETEDLDREFEDNVRTAWSNPLDRSMRR* |
| Ga0182024_125997222 | 3300014501 | Permafrost | VTEMEFDSWNEQLLDELIDGADAPEDWSGAVDMEAEDLDREFEDNARGLWSTPHDRSLRR |
| Ga0137403_100878805 | 3300015264 | Vadose Zone Soil | NEQLLDELIDAADAPEDWSGAVDVEAEDLDRDFEDTARSLWSTPHDRSLRR* |
| Ga0181515_15098092 | 3300016730 | Peatland | MDDLIDAADAPEDWSGSVDVEAEDLGREPEDNAQPGWTNPHDRLARR |
| Ga0187848_101963511 | 3300017935 | Peatland | DSWNEQLLDELIDMANAPEDWSGAIDVESEDLDREFEDTGRTAWSVPQDRSLRR |
| Ga0187872_104641901 | 3300018017 | Peatland | EDWSGAIDVEAEDLDREFEDNARGAWSNPQDRSLRR |
| Ga0187863_105097102 | 3300018034 | Peatland | ADAPEDWSGAVDMEAEDLDREFEDNARSLWSTPHDRSLRR |
| Ga0187875_100303441 | 3300018035 | Peatland | EQLLDELIDVADAPEDWSGAVDVEAEDLDREFEDNARASWSTSQDRSLRR |
| Ga0187883_100729521 | 3300018037 | Peatland | MLDAADAPEDWSGAIDVETEDLDRDFEDNARMAWSTPQDRSLRR |
| Ga0187887_103025701 | 3300018043 | Peatland | EFDSWNEQLLDEQIDAADAPEDWSGAVDVEAEDLDRQFEDNARGAWSIPHDRSMRR |
| Ga0184587_1069501 | 3300019185 | Soil | EHLWDDLIEAADAPEDWSGAIDVESEDLGREFEDNARTAWSSPNDRSMRR |
| Ga0182031_13144752 | 3300019787 | Bog | LDELIDAADPPEDWSGAVDVEAEDLDREFEDNARSLWSTPNDRSLRR |
| Ga0179592_100452451 | 3300020199 | Vadose Zone Soil | DAWNEQLLDELIDSADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPYDRSLRR |
| Ga0210403_108856112 | 3300020580 | Soil | DLIEVADAPEDWSGAIDVEAEDLGREFEDNARTAWSNPHERSLRR |
| Ga0210403_109941912 | 3300020580 | Soil | MEFDSWNEQMLDDLIDAADAPEDWSGAVDVEAEDLDREFEDNARTLWSTPNDRSLRR |
| Ga0179596_102910792 | 3300021086 | Vadose Zone Soil | SWNEQLLDRMLDAADAPEDWSGAVDVEAEDLDRDFEDNVRTAWSNPEDRSLRR |
| Ga0179596_104454642 | 3300021086 | Vadose Zone Soil | QLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPHDRSLRR |
| Ga0210400_105610292 | 3300021170 | Soil | TVTEVDFDSWNEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPSDRSLR |
| Ga0210396_113973031 | 3300021180 | Soil | NEHLWDDLIEAADAPEDWSGAIDVEAEDLGREFEDNARTSWSSPHDRSARR |
| Ga0210388_117625231 | 3300021181 | Soil | GTVTEVDFDSWNDQLLDELIDSADAPEDWSGAVDVEAEDLDRDFEDTARSLWSTPHDRSLRR |
| Ga0210393_107002081 | 3300021401 | Soil | FDSWNEHLRDDLIEVADAPEDWSGAVDVEAEDLGREFEDNARSAWSNPHERSLRR |
| Ga0210387_113373222 | 3300021405 | Soil | DDLIEVADAPEDWSGAVDVEAEDLGREFEDNARTVWSNPNERSMRR |
| Ga0210386_104219962 | 3300021406 | Soil | EFDSWNEQLLDELIDMADAPEDWSGAVDVESEDLDREFEDNARTAWSSHQDRSLRR |
| Ga0210383_110423021 | 3300021407 | Soil | WDDLIEAADAPEDWSGAIDVESEDLGREFEDNARTAWSSPNDRSLRR |
| Ga0210384_112780091 | 3300021432 | Soil | MEFDAWNEQLLDRMLDVADAPEDWSGAVDVESEDLDRDFEDTPRTAWSTPQDRSLRR |
| Ga0210391_100359405 | 3300021433 | Soil | VAEMEFDSWNEQLLDELIDSADAPEDWSGAVDVEAEDLDREFEDNARTLWSTPNDRSLRR |
| Ga0210391_113187952 | 3300021433 | Soil | QLLDDIIESADAPEDWSGAIDVEAEDLDREFEDNARTSWSDPHDRSLRR |
| Ga0210390_107992661 | 3300021474 | Soil | EQLLDELIDAADAPEDWSGAIDVEAEDLDREFEDNGRASWSSSDDRSLRR |
| Ga0210390_113999591 | 3300021474 | Soil | DELIDVADAPEDWSGAIDVEAEDLDREFEDNARTSWSNPQDRSLRR |
| Ga0247667_10557931 | 3300024290 | Soil | QLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPNDRSLRR |
| Ga0207803_10384762 | 3300027000 | Tropical Forest Soil | ELIEAADAPEDWSGAIDVEAEDLGREFEDNARTSWSDPNDRSLRR |
| Ga0209446_10065721 | 3300027698 | Bog Forest Soil | FDSWNEHLLDDVIEAADAPEDWSGAIDVEAEDLDREFEDNARTAWSDPHDRSLRR |
| Ga0209275_100825302 | 3300027884 | Soil | EDWSGAVDMEAEDLDRDFEDNARGSWSIPNDRSLRR |
| Ga0265352_10091542 | 3300028021 | Soil | DDLIEAADAPEDWSGAIDVESEDLGREFEDNARTAWSSPNDRSLRR |
| Ga0265355_10099232 | 3300028036 | Rhizosphere | EDWSGAIDVEAEDLGREFEDNARTSWSSHHDRSMRR |
| Ga0265349_10150631 | 3300028037 | Soil | WDDLIEAADAPEDWSGAIDVEAEDLGREFEDNPRTAWSNPHDRSMRR |
| Ga0209526_106933431 | 3300028047 | Forest Soil | PEDWSGAVDVEAEDLDREFEDNARTLWSTPNDRSLRR |
| Ga0209526_107362012 | 3300028047 | Forest Soil | WNEQLLDELIDAADAPEDWSGAVDVEAEDLDRDFEDTARSLWSTPHDRSLRR |
| Ga0247684_10553561 | 3300028138 | Soil | EFDSWNEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPNDRSLRR |
| Ga0247682_10530481 | 3300028146 | Soil | NEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPNDRSLRR |
| Ga0302202_105151542 | 3300028762 | Bog | IDGADAPEDWSGAVDVEAEDLDREFEDNARGLWSTPNDRSMRR |
| Ga0302231_102527792 | 3300028775 | Palsa | GTVTEMEFDAWNEHLLDELIDDADAPEDWSGAVDVETEDLDREFEDTARAVWASPNERSLRR |
| Ga0302232_103369041 | 3300028789 | Palsa | LIDAADAPEDWSGAVDVEAEDLDREFEDNARATWSSSHDRSLRR |
| Ga0302226_100960002 | 3300028801 | Palsa | TVAEMDFDSWNEQLLDELIDSADAPEDWSGAVDVEAEDLDREFEDNARGLWSTPHDRSLR |
| Ga0302221_105286161 | 3300028806 | Palsa | NEHLWDDLIEAADAPEDWSGAIDVEAEDLGREFEDNARSAWSSPNDRSMRR |
| Ga0302229_104975301 | 3300028879 | Palsa | DAPEDWSGAVDVEAEDLDRDFEDNARAAWSSSHDRSMRR |
| Ga0222749_107397651 | 3300029636 | Soil | DFDSWNEQLLDDIIESADAPEDWSGAIDVEAEDLDREFEDNARTSWSDPHDRSLRR |
| Ga0311368_103697761 | 3300029882 | Palsa | FDRMLDAADAPEDWSGAIDVETEDLDREFEDNVRTAWSNPQDRSLRR |
| Ga0311327_108855731 | 3300029883 | Bog | DIADAPEDWSGAIDVEAEDLDREFEDNARTLWSNPQDRSARR |
| Ga0311361_101001225 | 3300029911 | Bog | EMEFESWNEQLLDELIDGADAPEDWSGAVDVEAEDLDREFEDNARGLWSTPNDRSMRR |
| Ga0311361_101961461 | 3300029911 | Bog | SWNEQLLDEQIDAADAPEDWSGAVDVEAEDLDREFEDNTRTAWSSPHDRSMRR |
| Ga0311328_108246771 | 3300029939 | Bog | IADAPEDWSGAIDVEAEDLDREFEDNARTLWSNPQDRSARR |
| Ga0311371_108757911 | 3300029951 | Palsa | WHEQLFDRMLDAADAPEDWSGAIDVETEDLDREFEDNVRTAWSSPQDRSLRR |
| Ga0311336_105781152 | 3300029990 | Fen | AEMEFDSWNEHLLDELIDAADAPEDWSGAVDMEAEDLDREFEDTARSLWSTPHDRSMRR |
| Ga0311339_106081111 | 3300029999 | Palsa | TEIEFDSWNEQLLDELIDVADAPEDWSGAVDVEAEDLDREFEDNARASWSTSQDRSLRR |
| Ga0311339_119396762 | 3300029999 | Palsa | AAYAPEDWSGAIDVEAEDLDREFEDTARPSWSRHADRSMRR |
| Ga0302178_105379761 | 3300030013 | Palsa | TVTEVEFDSWNEQLLDELIDVADAPEDWSGAVDVEVEDLDRDFEDNARASWSTSQDRSLR |
| Ga0311344_103977582 | 3300030020 | Bog | EVEFDSWNEQLLDELIDIADAPEDWSGAIDVEAEDLDREFEDNARTLWSNPQDRSARR |
| Ga0311344_105130661 | 3300030020 | Bog | DAPEDWSGAVDVESEDLDREFEDTARAVWATPNERSLRR |
| Ga0311353_115736241 | 3300030399 | Palsa | VTEVEFDSWNEQLLDELIEAADAPEYWSGAVDVEAEDLDRDFEDNARAAWSSSHDRSMRR |
| Ga0311370_101646995 | 3300030503 | Palsa | DAADAPEDWSGAIDVETEDLDREFEDNVRTAWSSPQDRSLRR |
| Ga0311356_111762701 | 3300030617 | Palsa | APEDWSGAIDVETEDLDREFEDNVRTAWSSPQDRSLRR |
| Ga0302313_101884272 | 3300030693 | Palsa | AEMDFDSWNEQLLDELIDSADAPEDWSGAVDVEAEDLDREFEDNARGLWSTPHDRSLRR |
| Ga0265460_124737342 | 3300030740 | Soil | WNEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNTRSLWSTPNDRSLRR |
| Ga0265459_116884242 | 3300030741 | Soil | VRLLDELIDDADAPEDWSGAVDVETEDLDREFEDTGRAVWASPKERSLRR |
| Ga0075384_112648721 | 3300030841 | Soil | DAPEDWSGAVDVEAEDLDREFEDNARSLWSTPSDRSLRR |
| Ga0302314_102537591 | 3300030906 | Palsa | AWHEQLFDRMLDAADAPEDWSGAIDVETEDLDREFEDNVRTAWSSPQDRSLRR |
| Ga0302180_100978772 | 3300031028 | Palsa | GTVAEMEFDSWNEQLLDELIDSADAPEDWSGAVDVEAEDLDREFEDNARGLWSTPHDRSLRR |
| Ga0170834_1088389361 | 3300031057 | Forest Soil | AWNEQLLDRMLDVADAPEDWSGAVDVESEDLDRDFEDTPRTAWSTPEDRSLRR |
| Ga0170824_1064916445 | 3300031231 | Forest Soil | DAPEDWSGAVDVEAEDLDREFEDNARSLWSTPHDRSLRR |
| Ga0170824_1088435742 | 3300031231 | Forest Soil | LWDNLIEAADAPEDWSGAIDVEAEDLGREFEDNARTAWSSPHDRSMRR |
| Ga0170824_1092698551 | 3300031231 | Forest Soil | ADAPEDWSGAIDVESEDLDREFEDTARPPWSTHADRSLRR |
| Ga0170824_1247958992 | 3300031231 | Forest Soil | EFECWNEQLLDRTLDAADAPEDWSGAVDVEAEDLDREFEDNARMAWSSPEDRSLLR |
| Ga0170820_120784661 | 3300031446 | Forest Soil | IEAADAPEDWSGAIDVEAEDLGREFEDNARTAWSSPHDRSMRR |
| Ga0170818_1152389832 | 3300031474 | Forest Soil | LDRMLDVADAPEDWSGAVDVESEDLDRDFEDTPRTAWSTPEDRSLRR |
| Ga0302326_111571291 | 3300031525 | Palsa | DSWNEQLLDELIDVADAPEDWSGAVDVEAEDLDREFEDNARASWSTSQDRSLRR |
| Ga0265313_101453961 | 3300031595 | Rhizosphere | IEAADAPEDWSGAVDVEAEDLDREFEDTARAVWSSPTDRSVGR |
| Ga0265313_104383471 | 3300031595 | Rhizosphere | DELIEAADAPEDWSGAVDIEAEDLDREFEDNTRTAWSTPSARPLDR |
| Ga0310686_1005457201 | 3300031708 | Soil | ADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPNDRSMRR |
| Ga0310686_1098937851 | 3300031708 | Soil | LIDAADAPEDWSGAVDVEAEDLDREFEDNARGAWSSPQDRSLRR |
| Ga0307476_104368352 | 3300031715 | Hardwood Forest Soil | APEDWSGAVDVEAEDLDRDFEDNARASWSSSQDRSLRR |
| Ga0307474_101419163 | 3300031718 | Hardwood Forest Soil | DRMLDVADAPEDWSGAVDVESEDLDRDFEDTPRTAWSTPDDRSLGR |
| Ga0307516_100325891 | 3300031730 | Ectomycorrhiza | APEDWSGAVDVENEDLDRDFEDTPRTAWSTPEDRSLRR |
| Ga0307516_107617731 | 3300031730 | Ectomycorrhiza | VTEMEFDSWNEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPNDRSLRR |
| Ga0307478_114212192 | 3300031823 | Hardwood Forest Soil | SWNEQLLDELIDMADAPEDWSGAVDVESEDLDREFEDNVRTAWSSHQDRSLRR |
| Ga0307479_118934292 | 3300031962 | Hardwood Forest Soil | ADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPNDRSLRR |
| Ga0307470_107431772 | 3300032174 | Hardwood Forest Soil | SWNEQLLDELIDAADAPEDWSGAVDVEAEDLDREFEDNARSLWSTPNDRSLRR |
| Ga0335073_107248042 | 3300033134 | Soil | DAPEDWSGAVDVESEDLDRDFEDNARTAWSAHQDRSLRR |
| Ga0316624_100165526 | 3300033486 | Soil | EQMLDGSIDNADAPEDWSGSVDVGIEDLDREFEDTAQIPWATRSDRDLRR |
| Ga0334840_020605_1996_2163 | 3300033824 | Soil | FDSWNEQLLDELIDMANAPEDWSGAIDVETEDLDREFEDTGRTAWSVPQDRSLRR |
| Ga0370514_106890_2_163 | 3300034199 | Untreated Peat Soil | SWNEQLLDELIDMANAPEDWSGAIDVESEDLDREFEDTGRTAWSVPQDRSLRR |
| Ga0370492_0097501_1027_1200 | 3300034282 | Untreated Peat Soil | VEFDSWNEQLLDELIDMANAPEDWSGAIDVETEDLDREFEDTGRTAWSVPQDRSLRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |