NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F061931

Metagenome / Metatranscriptome Family F061931

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F061931
Family Type Metagenome / Metatranscriptome
Number of Sequences 131
Average Sequence Length 42 residues
Representative Sequence MKEMTANDDFERFRTGAAKYAAYLETPEGQLRLDLAFANL
Number of Associated Samples 118
Number of Associated Scaffolds 131

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 80.92 %
% of genes near scaffold ends (potentially truncated) 99.24 %
% of genes from short scaffolds (< 2000 bps) 91.60 %
Associated GOLD sequencing projects 113
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (93.130 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(12.977 % of family members)
Environment Ontology (ENVO) Unclassified
(24.427 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(58.779 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.59%    β-sheet: 0.00%    Coil/Unstructured: 54.41%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 131 Family Scaffolds
PF01841Transglut_core 6.11
PF07944Glyco_hydro_127 6.11
PF00528BPD_transp_1 5.34
PF14559TPR_19 2.29
PF00561Abhydrolase_1 1.53
PF00005ABC_tran 1.53
PF08439Peptidase_M3_N 1.53
PF00152tRNA-synt_2 1.53
PF07992Pyr_redox_2 1.53
PF07228SpoIIE 1.53
PF07969Amidohydro_3 0.76
PF13495Phage_int_SAM_4 0.76
PF01400Astacin 0.76
PF13641Glyco_tranf_2_3 0.76
PF14871GHL6 0.76
PF07676PD40 0.76
PF01914MarC 0.76
PF12840HTH_20 0.76
PF00069Pkinase 0.76
PF02574S-methyl_trans 0.76
PF05711TylF 0.76
PF07730HisKA_3 0.76
PF12697Abhydrolase_6 0.76
PF04185Phosphoesterase 0.76
PF13365Trypsin_2 0.76
PF13185GAF_2 0.76
PF13545HTH_Crp_2 0.76
PF00294PfkB 0.76
PF00196GerE 0.76
PF16757Fucosidase_C 0.76
PF04055Radical_SAM 0.76
PF13776DUF4172 0.76
PF00400WD40 0.76
PF00578AhpC-TSA 0.76
PF13602ADH_zinc_N_2 0.76
PF05694SBP56 0.76
PF04261Dyp_perox 0.76
PF04454Linocin_M18 0.76
PF00665rve 0.76
PF07722Peptidase_C26 0.76
PF04986Y2_Tnp 0.76
PF07715Plug 0.76
PF13590DUF4136 0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 131 Family Scaffolds
COG3533Beta-L-arabinofuranosidase, GH127 familyCarbohydrate transport and metabolism [G] 6.11
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.05
COG0173Aspartyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 1.53
COG0017Aspartyl/asparaginyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 1.53
COG1164Oligoendopeptidase FAmino acid transport and metabolism [E] 1.53
COG1190Lysyl-tRNA synthetase, class IITranslation, ribosomal structure and biogenesis [J] 1.53
COG2269Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway)Translation, ribosomal structure and biogenesis [J] 1.53
COG4585Signal transduction histidine kinase ComPSignal transduction mechanisms [T] 0.76
COG4584TransposaseMobilome: prophages, transposons [X] 0.76
COG4564Signal transduction histidine kinaseSignal transduction mechanisms [T] 0.76
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 0.76
COG3850Signal transduction histidine kinase NarQ, nitrate/nitrite-specificSignal transduction mechanisms [T] 0.76
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.76
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.76
COG2837Periplasmic deferrochelatase/peroxidase EfeBInorganic ion transport and metabolism [P] 0.76
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.76
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.76
COG2095Small neutral amino acid transporter SnatA, MarC familyAmino acid transport and metabolism [E] 0.76
COG2040Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)Amino acid transport and metabolism [E] 0.76
COG0646Methionine synthase I (cobalamin-dependent), methyltransferase domainAmino acid transport and metabolism [E] 0.76


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.13 %
UnclassifiedrootN/A6.87 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002245|JGIcombinedJ26739_100122767All Organisms → cellular organisms → Bacteria2446Open in IMG/M
3300002562|JGI25382J37095_10280239All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300002910|JGI25615J43890_1056105All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium657Open in IMG/M
3300004080|Ga0062385_10438576All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300004479|Ga0062595_100188864All Organisms → cellular organisms → Bacteria → Acidobacteria1258Open in IMG/M
3300004479|Ga0062595_101949031All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300005176|Ga0066679_10022951All Organisms → cellular organisms → Bacteria3335Open in IMG/M
3300005330|Ga0070690_100192546All Organisms → cellular organisms → Bacteria1414Open in IMG/M
3300005451|Ga0066681_10627207All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300005542|Ga0070732_10542251All Organisms → cellular organisms → Bacteria → Acidobacteria705Open in IMG/M
3300005553|Ga0066695_10137398All Organisms → cellular organisms → Bacteria → Proteobacteria1516Open in IMG/M
3300005563|Ga0068855_102160215All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium560Open in IMG/M
3300005569|Ga0066705_10252660All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1117Open in IMG/M
3300005842|Ga0068858_101715312All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium620Open in IMG/M
3300005921|Ga0070766_10218870All Organisms → cellular organisms → Bacteria1198Open in IMG/M
3300006237|Ga0097621_101105376All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium744Open in IMG/M
3300006796|Ga0066665_10536613All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300006893|Ga0073928_10859452All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium624Open in IMG/M
3300007258|Ga0099793_10240327All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium873Open in IMG/M
3300009011|Ga0105251_10209297All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300009088|Ga0099830_11883230All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300009089|Ga0099828_11027729All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium734Open in IMG/M
3300009137|Ga0066709_104409445All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium514Open in IMG/M
3300010048|Ga0126373_10093746All Organisms → cellular organisms → Bacteria2763Open in IMG/M
3300010048|Ga0126373_10307630All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1583Open in IMG/M
3300010048|Ga0126373_11426202All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium758Open in IMG/M
3300010301|Ga0134070_10002618All Organisms → cellular organisms → Bacteria5357Open in IMG/M
3300010303|Ga0134082_10009715All Organisms → cellular organisms → Bacteria → Acidobacteria3460Open in IMG/M
3300010366|Ga0126379_12677771All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300010376|Ga0126381_102792730All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300011120|Ga0150983_10382781All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium556Open in IMG/M
3300011120|Ga0150983_10812737All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300011269|Ga0137392_10695434All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium842Open in IMG/M
3300011270|Ga0137391_10527351All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium997Open in IMG/M
3300011270|Ga0137391_10796711All Organisms → cellular organisms → Bacteria → Acidobacteria779Open in IMG/M
3300011271|Ga0137393_10250534All Organisms → cellular organisms → Bacteria1503Open in IMG/M
3300012202|Ga0137363_11478660All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300012203|Ga0137399_10753693All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium820Open in IMG/M
3300012205|Ga0137362_10492365All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1061Open in IMG/M
3300012205|Ga0137362_11367611All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300012205|Ga0137362_11440347All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300012212|Ga0150985_122111259All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300012361|Ga0137360_11407015All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300012362|Ga0137361_10196230All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1824Open in IMG/M
3300012362|Ga0137361_11004728All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300012469|Ga0150984_115228730All Organisms → cellular organisms → Bacteria → Acidobacteria618Open in IMG/M
3300012971|Ga0126369_10608465All Organisms → cellular organisms → Bacteria1163Open in IMG/M
3300012984|Ga0164309_10054597All Organisms → cellular organisms → Bacteria2332Open in IMG/M
3300013297|Ga0157378_10245926All Organisms → cellular organisms → Bacteria → Acidobacteria1711Open in IMG/M
3300015206|Ga0167644_1081750All Organisms → cellular organisms → Bacteria → Acidobacteria1021Open in IMG/M
3300015245|Ga0137409_10117183All Organisms → cellular organisms → Bacteria2457Open in IMG/M
3300015372|Ga0132256_100350368Not Available1570Open in IMG/M
3300015373|Ga0132257_100668578All Organisms → cellular organisms → Bacteria1288Open in IMG/M
3300016341|Ga0182035_11603466All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300016371|Ga0182034_11407486All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300017823|Ga0187818_10567047All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium512Open in IMG/M
3300017932|Ga0187814_10041307All Organisms → cellular organisms → Bacteria1703Open in IMG/M
3300017943|Ga0187819_10036438All Organisms → cellular organisms → Bacteria2908Open in IMG/M
3300017947|Ga0187785_10440806All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300017955|Ga0187817_10185236All Organisms → cellular organisms → Bacteria1326Open in IMG/M
3300017955|Ga0187817_10988704All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300017970|Ga0187783_10298072All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1176Open in IMG/M
3300017972|Ga0187781_11486946All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300017975|Ga0187782_11551096All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium522Open in IMG/M
3300017994|Ga0187822_10063487All Organisms → cellular organisms → Bacteria1064Open in IMG/M
3300018090|Ga0187770_10719772All Organisms → cellular organisms → Bacteria797Open in IMG/M
3300018433|Ga0066667_12080382All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300018468|Ga0066662_11059280All Organisms → cellular organisms → Bacteria → Acidobacteria807Open in IMG/M
3300020579|Ga0210407_10827824All Organisms → cellular organisms → Bacteria713Open in IMG/M
3300020579|Ga0210407_11010163All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300020582|Ga0210395_10452399All Organisms → cellular organisms → Bacteria966Open in IMG/M
3300020582|Ga0210395_10518906All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium896Open in IMG/M
3300020583|Ga0210401_10964566All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156711Open in IMG/M
3300021046|Ga0215015_10732400All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium829Open in IMG/M
3300021171|Ga0210405_10131668All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae1978Open in IMG/M
3300021401|Ga0210393_10294612All Organisms → cellular organisms → Bacteria1318Open in IMG/M
3300021404|Ga0210389_10543603Not Available914Open in IMG/M
3300021406|Ga0210386_11772545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panacis509Open in IMG/M
3300021407|Ga0210383_11311769Not Available605Open in IMG/M
3300021420|Ga0210394_10383565All Organisms → cellular organisms → Bacteria → Acidobacteria1236Open in IMG/M
3300021433|Ga0210391_11041667All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300021439|Ga0213879_10043980All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1164Open in IMG/M
3300021477|Ga0210398_11060172Not Available645Open in IMG/M
3300021560|Ga0126371_12556482All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300022528|Ga0242669_1040993All Organisms → cellular organisms → Bacteria → Acidobacteria762Open in IMG/M
3300023259|Ga0224551_1008102All Organisms → cellular organisms → Bacteria → Acidobacteria1750Open in IMG/M
3300024246|Ga0247680_1019940All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium970Open in IMG/M
3300024249|Ga0247676_1074143All Organisms → cellular organisms → Bacteria → Acidobacteria562Open in IMG/M
3300025899|Ga0207642_10330352All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium893Open in IMG/M
3300025903|Ga0207680_10795241All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300025907|Ga0207645_10263387All Organisms → cellular organisms → Bacteria1142Open in IMG/M
3300025919|Ga0207657_10291135All Organisms → cellular organisms → Bacteria1295Open in IMG/M
3300025937|Ga0207669_11343815All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300026004|Ga0208416_1015181All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300026022|Ga0208649_1021618All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300026323|Ga0209472_1267607All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300026515|Ga0257158_1101976All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium567Open in IMG/M
3300026538|Ga0209056_10044971All Organisms → cellular organisms → Bacteria → Proteobacteria4004Open in IMG/M
3300026547|Ga0209156_10201568All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300026557|Ga0179587_10161949All Organisms → cellular organisms → Bacteria1399Open in IMG/M
3300026990|Ga0207824_1033715Not Available544Open in IMG/M
3300027172|Ga0208098_1018928All Organisms → cellular organisms → Bacteria → Acidobacteria676Open in IMG/M
3300027497|Ga0208199_1125042All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300027570|Ga0208043_1060905All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1081Open in IMG/M
3300027576|Ga0209003_1105723All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium533Open in IMG/M
3300027629|Ga0209422_1128597All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium576Open in IMG/M
3300027654|Ga0209799_1136216All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium559Open in IMG/M
3300027654|Ga0209799_1154059Not Available523Open in IMG/M
3300027680|Ga0207826_1178647All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300027698|Ga0209446_1042733All Organisms → cellular organisms → Bacteria1143Open in IMG/M
3300027783|Ga0209448_10284561All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium543Open in IMG/M
3300027889|Ga0209380_10195570All Organisms → cellular organisms → Bacteria1187Open in IMG/M
3300027905|Ga0209415_10263456All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1533Open in IMG/M
3300027986|Ga0209168_10144380All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1209Open in IMG/M
3300028016|Ga0265354_1006307All Organisms → cellular organisms → Bacteria → Acidobacteria1180Open in IMG/M
3300029944|Ga0311352_10900067Not Available686Open in IMG/M
3300031231|Ga0170824_104071953Not Available768Open in IMG/M
3300031236|Ga0302324_100027666All Organisms → cellular organisms → Bacteria10796Open in IMG/M
3300031474|Ga0170818_108822102All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium986Open in IMG/M
3300031708|Ga0310686_100375573Not Available1867Open in IMG/M
3300031740|Ga0307468_102572102All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300031754|Ga0307475_10499781All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300031754|Ga0307475_11539714All Organisms → cellular organisms → Bacteria → Acidobacteria509Open in IMG/M
3300031823|Ga0307478_11338569All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium595Open in IMG/M
3300031954|Ga0306926_11663051All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300031962|Ga0307479_11726111All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300032076|Ga0306924_11289564All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300032261|Ga0306920_100083031All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4715Open in IMG/M
3300032898|Ga0335072_10259625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1988Open in IMG/M
3300033134|Ga0335073_12145971All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium504Open in IMG/M
3300033402|Ga0326728_11170696All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium513Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil12.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil12.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.11%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.34%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.58%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.58%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.82%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.82%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.05%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.29%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.29%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.53%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.53%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.53%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.53%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.53%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.53%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.53%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.53%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.53%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.76%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.76%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.76%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.76%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.76%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.76%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.76%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.76%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.76%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.76%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.76%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.76%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.76%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.76%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.76%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.76%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.76%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.76%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.76%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002910Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cmEnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300015206Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021439Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03EnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022528Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023259Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24EnvironmentalOpen in IMG/M
3300024246Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21EnvironmentalOpen in IMG/M
3300024249Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026004Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302 (SPAdes)EnvironmentalOpen in IMG/M
3300026022Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_201 (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026990Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)EnvironmentalOpen in IMG/M
3300027172Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)EnvironmentalOpen in IMG/M
3300027497Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027570Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027576Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027629Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028016Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1Host-AssociatedOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10012276733300002245Forest SoilMQKIAKAGSEHFQSGADKYAAYLETPEGRLRSDLAFAHLQEFLPLPRTR
JGI25382J37095_1028023923300002562Grasslands SoilMQMTAKADSGCFQSGADKYAAYLETPEGRLRCDLVFANLQDFLPLPQTKLSLR
JGI25615J43890_105610513300002910Grasslands SoilMKTSAKPDTGFRSDAGKYAAYLATPEGRLRLDLAFANLQE
Ga0062385_1043857613300004080Bog Forest SoilMTIASNDERFQHGAQDYAAYLQSPEGRWRADLALANLQDF
Ga0062595_10018886413300004479SoilMTANSNSDSNDDLERFQTGAPKYAAYLETPEGRLRLDLAFA
Ga0062595_10194903113300004479SoilMEMTATTDIERFRAGATQYAAYLETPEGRLRLDLAFDTLQEFLPQATQSSH
Ga0066679_1002295113300005176SoilMKEMTVNDDFERFRTGAAKYAAYLETPEGRLRLDLAFSNLQDFLPQATRSLLA
Ga0070690_10019254613300005330Switchgrass RhizosphereMKEMTANDDCERFRTGAAKYAAYLETPEGRLRLDLALANLQDFLPRAT
Ga0066681_1062720713300005451SoilMQMTAKPASEGFQSGADKYAAYLEILEGRLRCGLVFANLQDFLVLPQSRRSLR
Ga0070732_1054225123300005542Surface SoilMKKLTANADREHFQSEADKYATYLETPEGRLRLDLPFSNLQEFLALPQGKA
Ga0066695_1013739833300005553SoilMKKMTADGERFRTGAAKYAAYLETPEGQLRLDLAFANL
Ga0068855_10216021513300005563Corn RhizosphereMMQMTAANDDFERFRTGAAKYAAYLETPEGRLRLDL
Ga0066705_1025266033300005569SoilMKEMTADDDFERFRTGTAKYAGYLETPEGRLRLDLAFA
Ga0068858_10171531223300005842Switchgrass RhizosphereMLREKMSTHTDSERFLSGAGKYAAYLETPEGRLRLDLA
Ga0070766_1021887013300005921SoilMNTANDDPERFQREAHEYAAYLETPEGRLRLDLPFANLQESLPL
Ga0097621_10110537623300006237Miscanthus RhizosphereMIINAADERFLSDAARYAAYLETPEGRLRLDIAFANLQ
Ga0066665_1053661313300006796SoilMQMTAKADSGCFQSGADKYAAYLETPEGRLRCDLVFANLQDF
Ga0073928_1085945223300006893Iron-Sulfur Acid SpringMKVPAKAASERFQGGAHDYAAYLETPEGRLRSDLTLANLQDFLPLLQAKG
Ga0099793_1024032723300007258Vadose Zone SoilMKMTAEADSERFQSGANQYAVYLETPEGRLRSDLAF
Ga0105251_1020929713300009011Switchgrass RhizosphereMKEMTANDDCERFRTGAAKYAAYLETPEGQLRLDLALAN
Ga0099830_1188323013300009088Vadose Zone SoilMTAKADSGRFQSGADKYAAYLETPEGRLRCDLSFANLQDFLPLPQTKL
Ga0099828_1102772913300009089Vadose Zone SoilMKTSAQTDSERFQSGADKYAAYLETPEGRLRLDLAF
Ga0066709_10440944513300009137Grasslands SoilLPEWRKKEMIANDDFERFRSGAAKYAAYLETPEGQLRLDLAF
Ga0126373_1009374643300010048Tropical Forest SoilMNMMAKADRNRFQTDAGKYAAYLETPEGRLRLDLAFANLQ
Ga0126373_1030763023300010048Tropical Forest SoilVKASAKTDRRFQSDAGKYAAYLETPEGRLRLDLTFAN
Ga0126373_1142620223300010048Tropical Forest SoilMTITTNSDDERFRAGAEKYASYLETREGRLRMDLTFLNLQEFLPVK
Ga0134070_1000261863300010301Grasslands SoilMKEMTADDDFERFRTGAAKYAGYLETPEGRLRLDLAFAN
Ga0134082_1000971513300010303Grasslands SoilMKEMTANDDFERFRTGAAKYAAYLETPEGQLRLDLAFANL
Ga0126379_1267777123300010366Tropical Forest SoilMKRIAPNAGHERFQSGAEKYAAYLETPEGRLRLDLTFANLRESLPKSAQ
Ga0126381_10279273023300010376Tropical Forest SoilMNVKEDFERFGNGAEKYAAYLETPEGRLRLDLPLA
Ga0150983_1038278113300011120Forest SoilMTTSPECDRFQSGADKYAAYLDTPDGRLHLDLTLANLQEFLPQAT
Ga0150983_1081273713300011120Forest SoilMKKLTANADREHFQSEADKYATYLETPEGRLRLDLPFSNLQEF
Ga0137392_1069543423300011269Vadose Zone SoilMKMIAKADSGRFQSGADKYAAYLETPEGRLRCDLTFANLQDFLPLPQT
Ga0137391_1052735123300011270Vadose Zone SoilMTANDDFERFRTGAAKYAAYLETPEGQLRLDLAFANLQ
Ga0137391_1079671113300011270Vadose Zone SoilMKEMTANDDFERFRTGAAKYAAYLETPEGQLRLDLAFA
Ga0137393_1025053423300011271Vadose Zone SoilMMMTAEAESERFQSGASKYAVYLETPEGRLRSDLAFADLQDFLLLPAKASLCAL
Ga0137363_1147866013300012202Vadose Zone SoilMKEMIANDDFERFRTGAAKYAPYLETPEGQLRLDLAVANLQDFFP
Ga0137399_1075369323300012203Vadose Zone SoilMPLTAKPDGDRFQNGADKYAAYLETPEGRLRCGLAF
Ga0137362_1049236513300012205Vadose Zone SoilMQMTAKPDSDRFQSGADKYAAYLETPEGRLRCGLA
Ga0137362_1136761123300012205Vadose Zone SoilMKEMIVNDDFERFRTGAAKYAAYLETPEGQLRLDLAFAN
Ga0137362_1144034713300012205Vadose Zone SoilMTANDDLERFRTGAAKYAAYLETPDGQLRLDLAFANLQ
Ga0150985_12211125913300012212Avena Fatua RhizosphereMTCNDTLERFRTGAAKYSMYLGTPEGRLRIDLALANLQDFLPQDPR
Ga0137360_1140701523300012361Vadose Zone SoilMQMTAKPDSDRFQSGADKYAAYLETPEGRLRCGLAFAN
Ga0137361_1019623033300012362Vadose Zone SoilMKEMTAHDDFERFRTGAAKYAAYLETPEGQLRLDL
Ga0137361_1100472813300012362Vadose Zone SoilMKEMIANDDFERFRTGAAKYAAYLDTPEGRLRLDLAFANL
Ga0150984_11522873013300012469Avena Fatua RhizosphereMKIMAGNAEDERFQTGAARYATYLETPEGRLRIDLA
Ga0126369_1060846523300012971Tropical Forest SoilMSTTVRSDSERFRSDAQKYAAYLETPEGRLRLDLA
Ga0164309_1005459713300012984SoilMKEMTANDDCERFRTGAAKYAAYLETPEGQLRLDLALANLQDFLP
Ga0157378_1024592623300013297Miscanthus RhizosphereMEMTATTDIERFRAGATQYAAYLETPEGRLRLDLAFDTLQEFLP
Ga0167644_108175023300015206Glacier Forefield SoilLKIPTNADGERFQSDANKYAAYLETPDGRLRSGLALANLLDFLPLQ
Ga0137409_1011718323300015245Vadose Zone SoilMMAETDINRFQSDANKYAAYLETPEGRLRADLSP*
Ga0132256_10035036813300015372Arabidopsis RhizosphereMKELTADADFERFRTGAAKYAASLGTPEGRLRLDLALA
Ga0132257_10066857813300015373Arabidopsis RhizosphereMKELTADADFERFRTGAAKYAAYLGTPEGRLRLDL
Ga0182035_1160346623300016341SoilMSTTARSDSERFRSDAQKYAAYLETPEGRLRLDLALANVREFLPVPAAN
Ga0182034_1140748613300016371SoilMTTTSDAERFRAEAAKYAAYLETPEGRLRIDLAIANLQEFLPR
Ga0187818_1056704713300017823Freshwater SedimentMQMTAKVDSEHFQSGADKYAAYLETPEGRLRSDLAF
Ga0187814_1004130743300017932Freshwater SedimentMKKVASNADRQRFQSGADKYAAYLKTPEGRLRLDLAFASLQEFLPP
Ga0187819_1003643823300017943Freshwater SedimentMKKIASKADSQRFQSGADKYAAYLKTPEGRLRLDLAFA
Ga0187785_1044080623300017947Tropical PeatlandMNRIVANTECERFQSGVEKYAAYLKTSEGRLRLDLTFANMQEFLP
Ga0187817_1018523623300017955Freshwater SedimentMQMTAKADSEGFQSGASKYAVYLETPEGRLRSDLAFTNLQDFLPQ
Ga0187817_1098870413300017955Freshwater SedimentMKKVASNADRQRFQSGADKYAAYLKTPEGRLRLDLAFASLQEFLPPP
Ga0187783_1029807233300017970Tropical PeatlandMKKMTANADRERFRSGADKYAAYLETPEGRLRLDLAFAYLQEFLPQATGSLRA
Ga0187781_1148694613300017972Tropical PeatlandMKKMGTNPDAERFQREADKYASYLETPEGRLRIDLAFAN
Ga0187782_1155109613300017975Tropical PeatlandMKKMSTNADAERFQREADKYATYLGTPEGRLRIDLAFAN
Ga0187822_1006348713300017994Freshwater SedimentMKETTADDLERFRSGAAKYAAYLETPLGRLRLDLSFANLQDFLPPATRPLSA
Ga0187770_1071977213300018090Tropical PeatlandMKKMTANADGERFQSGADKYAAYLETPEGRLRLDLTFANLQEF
Ga0066667_1208038213300018433Grasslands SoilMKEITANDDFERFRTGAAKYAAYLETPEGQLRLDLAFAN
Ga0066662_1105928013300018468Grasslands SoilMKKLTANADSEHFQSEADKYATYLETPEGRLRLGLPFSNLQELLPLPQ
Ga0210407_1082782423300020579SoilMKMTAKADSERFQSGANEYAVYLDTPEGRLRSDLAFRNL
Ga0210407_1101016313300020579SoilMQLTAKPDSNRFQSDADKYAAYLETPEGRLRCGLAFANVQDFLVLPRSGRALRGL
Ga0210395_1045239913300020582SoilMKETTANDEDDFERFRTGAAKYAAYLETPEGRLRL
Ga0210395_1051890623300020582SoilMQMTAKADSEGFQSGANKYADYLETPEGRLRSDLA
Ga0210401_1096456623300020583SoilMKEITANHDLERFRAGAAKYAAYLETPEGRLRVDLAFANLR
Ga0215015_1073240013300021046SoilMKMTAKADSERFQSGADKYAAYLETPEGRLRSDVAFANLQDFLPLEAKPSLCALD
Ga0210405_1013166813300021171SoilMKMTAKADAERFHSGANQYGAYLETPEGRLRSDLAFTNLQDFLPKRP
Ga0210393_1029461213300021401SoilMQKIAKAGSEHFQSGADKYAAYLETPEGRLRSDLA
Ga0210389_1054360313300021404SoilMAVNADRERFQNDADKYAAYLETAEGRLRLDLSFANLQESLPHK
Ga0210386_1177254513300021406SoilMKETTANDDLERFRTGVAKFAAYLETPEGKLRLNLAFA
Ga0210383_1131176913300021407SoilMTAKADSERFQSGADKYAAYLVGTPEGRLRSDLAFA
Ga0210394_1038356513300021420SoilMKEMTANNNDDFDRFRTGAAKYAAYLETPEGRLRLDLAF
Ga0210391_1104166713300021433SoilMKETNVSDDDDFERFRTGADQYAAYLETPEGRLRLDLAFA
Ga0213879_1004398013300021439Bulk SoilMIANPDSERFRSGAEKYAAYLETTEGRLRLDLTFANVQEFLPKT
Ga0210398_1106017213300021477SoilMQMTAKADSEGFQSGANKYADYLETPEGRLRSDLAFTNL
Ga0126371_1255648223300021560Tropical Forest SoilMKIGAQADNRFQADAGKYAAYLQTPEGRLRLDLAFAN
Ga0242669_104099323300022528SoilMKGRTANADFERFLTGAAKYAAYLETPEGRLRLDLAF
Ga0224551_100810233300023259SoilMKEMTANDDFERFRTGAAKYAAYLETPEGKLRLDLTFANLQ
Ga0247680_101994013300024246SoilMKEMTANDDCERFRTGAAKYAAYLETPEGQLRLDLAFA
Ga0247676_107414323300024249SoilMTTNSSGERFLTGAAQYAAYLETPEGRLRLDLTFANV
Ga0207642_1033035213300025899Miscanthus RhizosphereMKEMTANDDCERFRTGAAKYAAYLETPEGQLRLDLALANLQDFLPG
Ga0207680_1079524113300025903Switchgrass RhizosphereMKEMTANDDCERFRTGAAKYAAYLETPEGRLRLDLALANLQDFLPRATRS
Ga0207645_1026338713300025907Miscanthus RhizosphereMKEMTANDDCERFRTGAAKYAAYLETPEGQLRLDLALANLQDFLPRATRSLR
Ga0207657_1029113513300025919Corn RhizosphereMKEMTANDDCERFRTGAAKYAAYLETPEGQLRLDLAL
Ga0207669_1134381513300025937Miscanthus RhizosphereMKEMTANDDCERFRTGAAKYAAYLETPEGRLRLDLALANLQDF
Ga0208416_101518123300026004Rice Paddy SoilMNKVTANADRDRFQSEADKYAAYLETAEGRLRLDLPLANLQEFLQLPRDES
Ga0208649_102161813300026022Rice Paddy SoilMKNGSANADSERFQSEADKYAAYLETPEGGLRLDLAFVNLQEFLPQDTASLRAL
Ga0209472_126760713300026323SoilMQMTAKPASEGFQSGADKYAAYLEILEGRLRCGLVFANLQDFLVLPQSRRSL
Ga0257158_110197613300026515SoilMKMTAKADSERFQSGANEYAVYLDTPEGRLRSDLAF
Ga0209056_1004497113300026538SoilMQMTAKPASEGFQSGADKYAAYLEILEGRLRCGLVF
Ga0209156_1020156813300026547SoilMNKMTASADSECFLSGSEKYAAYLETPEGRLRLDLAF
Ga0179587_1016194913300026557Vadose Zone SoilMQMTAKPDSDRFQSGADKYAAYLETPEGRLRCGLAFAYLQDFLVLPQSRRSLRG
Ga0207824_103371513300026990Tropical Forest SoilMVTKSDDERFQSGAQDYALYLKTPEGRLRVDLLFT
Ga0208098_101892823300027172Forest SoilMVAHTDSERFQSDAEKYAAYLETPEGRLRIDLAFAN
Ga0208199_112504213300027497Peatlands SoilMKMSAKADSERFQSDANKYAVYLETPEGRLRSDLA
Ga0208043_106090523300027570Peatlands SoilMSECGMKMKMTANVDKERFQSGSEKYAAYLETPEG
Ga0209003_110572313300027576Forest SoilMQMTAKADSGRFQSGAGKYAAYLETPEGRLRSDLALANLQDFLPLPQTEL
Ga0209422_112859723300027629Forest SoilMKMTAKADSERFQSGANEYAVYLDTPEGRLRSDLAFRNLQDFLPQQDEK
Ga0209799_113621613300027654Tropical Forest SoilMNMMAKADRNRFQTDAGKYAAYLETPEGRLRLDLAIANLQEFLT
Ga0209799_115405913300027654Tropical Forest SoilMKTSSQTDNRFQHDAGKYAAYLESPEGRLRLDLAF
Ga0207826_117864713300027680Tropical Forest SoilMSSNLDTERFRSGVEKYAAFLETFEGRLRFDLTLATLQEFLPQVSRPLC
Ga0209446_104273343300027698Bog Forest SoilMTIASNDERFQHGAQDYAAYLQSPEGRWRADLALANLQDFLPIPQA
Ga0209448_1028456113300027783Bog Forest SoilMFASGDSERFQRGANKYASYLETPEGRLRSDLALANL
Ga0209380_1019557023300027889SoilMNTANDDPERFQREAHEYAAYLETPEGRLRLDLPFAN
Ga0209415_1026345623300027905Peatlands SoilMSECGMKMKMTANVDKERFQSGSEKYAAYLETPEGRLRLDLAF
Ga0209168_1014438013300027986Surface SoilMKPTTGNTGAERFQSGADKYAAYLDTTEGRLRLDLSLANLQEF
Ga0265354_100630723300028016RhizosphereMKEMTANDDADFERFRTGAAKYAAYLETPEGRLRLDLAFAN
Ga0311352_1090006713300029944PalsaMSAGPGSERFQSGANKYAAYLKTPGGRLRSDLAFAN
Ga0170824_10407195313300031231Forest SoilMKKMITADRERFQRGAQAYAAYLEKPEGRLRLDLA
Ga0302324_100027666153300031236PalsaMNMSAGDGSERFQSGANKYAAYLETPGGRLRSDLAFAN
Ga0170818_10882210223300031474Forest SoilMKEISSSNDLERFRGGAAKYAAYLETPEGRLRLDLAFVNLQ
Ga0310686_10037557313300031708SoilMKQMTANDDFERFRTGVAKYAAYLETPEGRLRLDLA
Ga0307468_10257210213300031740Hardwood Forest SoilMKEMTANDDFERFRTGAAKYAAYLETPEGRLRLDLAFAYLQDFLPQATRS
Ga0307475_1049978113300031754Hardwood Forest SoilMQMTAKPDSDRFQSGADKYAAYLETPEGRLRCGQAFANLQDFLVLPRSRRS
Ga0307475_1153971413300031754Hardwood Forest SoilMKKLTANADSERFQSEADKYATYLETPEGRLRLDLPFSNLQEFLA
Ga0307478_1133856923300031823Hardwood Forest SoilMKETTANADFERFQTGASKYAAYLETPEGRLRLDLGLANLQEFLPQA
Ga0306926_1166305133300031954SoilMSTIPRSDSERFRSDAQKYAAYLETPEGRLRLDLALANVR
Ga0307479_1172611133300031962Hardwood Forest SoilMKEITANDDFERFRTGAAKYAAYLETPEGQLRLDLAFANLQ
Ga0306924_1128956423300032076SoilMTATADNERFRSGADKYAAYLESSEGRLRLDLTFANLQ
Ga0306920_10008303183300032261SoilMKEITADDDFERFRTGAAKYAAYLATPEGRLRSDLAFAN
Ga0335072_1025962513300032898SoilMKKTTHLDADRFRRDAEKYAEYLKTPEGRLRLELAFVNLQ
Ga0335073_1214597113300033134SoilMEKTTTHSEETFQSGADKYAAYLETPEGRLRVDLGFANLQEFL
Ga0326728_1117069623300033402Peat SoilMKMNANTDREPFRSGAHDYAAYLETPEGRLRSDLAL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.