Metagenome / Metatranscriptome Family F061608

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061608
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	45 residues
Representative Sequence	ERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Number of Associated Samples	107
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	92.37 %
% of genes from short scaffolds (< 2000 bps)	85.50 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.916 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.718 % of family members)
Environment Ontology (ENVO)	Unclassified (39.695 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.198 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.23% β-sheet: 16.90% Coil/Unstructured: 78.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF13223	DUF4031	27.48
PF00135	COesterase	3.05
PF14247	DUF4344	2.29
PF07859	Abhydrolase_3	1.53
PF12168	DNA_pol3_tau_4	0.76
PF00550	PP-binding	0.76
PF03401	TctC	0.76
PF05711	TylF	0.76
PF03721	UDPG_MGDP_dh_N	0.76
PF07238	PilZ	0.76
PF01812	5-FTHF_cyc-lig	0.76
PF06627	DUF1153	0.76
PF06147	DUF968	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	3.05
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	1.53
COG0212	5-formyltetrahydrofolate cyclo-ligase	Coenzyme transport and metabolism [H]	0.76
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.76
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.76
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.76
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.92 %
Unclassified	root	N/A	19.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.92 %
Unclassified	root	N/A	19.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.92 %
Unclassified	root	N/A	19.08 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.49 %
Unclassified	root	N/A	19.08 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	54.20 %
Unclassified	root	N/A	19.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.08 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.69 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.92 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.76 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.92 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.76 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.76 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.76 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.92 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.76 %
Asticcacaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis	0.76 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	0.76 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.92 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	0.76 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.76 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.76 %
Asticcacaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis	0.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.92 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.76 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.76 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.76 %
Asticcacaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis	0.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2084038016\|SPCE_L_FSFSAB201A7FLO	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig808265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	548	Open in IMG/M
2170459002\|F0B48LX02J0RI1	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1064349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300000956\|JGI10216J12902_121076210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300005186\|Ga0066676_10042377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2546	Open in IMG/M
3300005332\|Ga0066388_107143499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300005332\|Ga0066388_108172169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300005436\|Ga0070713_100572999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1070	Open in IMG/M
3300005467\|Ga0070706_101783956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300005558\|Ga0066698_10181639	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300005559\|Ga0066700_10382292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	993	Open in IMG/M
3300005713\|Ga0066905_100233425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1401	Open in IMG/M
3300005713\|Ga0066905_100662012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	891	Open in IMG/M
3300005764\|Ga0066903_100614488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1888	Open in IMG/M
3300005764\|Ga0066903_105453506	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300005764\|Ga0066903_105768285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300005764\|Ga0066903_105817530	Not Available	647	Open in IMG/M
3300006854\|Ga0075425_102013952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300009012\|Ga0066710_101805057	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300009090\|Ga0099827_11487354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	590	Open in IMG/M
3300009143\|Ga0099792_10815660	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300010036\|Ga0126305_10839268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300010043\|Ga0126380_10634845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300010043\|Ga0126380_11768334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300010047\|Ga0126382_11834193	Not Available	571	Open in IMG/M
3300010047\|Ga0126382_12159554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300010048\|Ga0126373_12370594	Not Available	591	Open in IMG/M
3300010147\|Ga0126319_1285620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	597	Open in IMG/M
3300010303\|Ga0134082_10517718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300010333\|Ga0134080_10126714	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300010360\|Ga0126372_10338938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1342	Open in IMG/M
3300010360\|Ga0126372_12264127	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300010360\|Ga0126372_12331630	Not Available	585	Open in IMG/M
3300010366\|Ga0126379_13854321	Not Available	502	Open in IMG/M
3300010376\|Ga0126381_101141132	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300010376\|Ga0126381_103293479	Not Available	637	Open in IMG/M
3300011271\|Ga0137393_11441004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300012200\|Ga0137382_11195923	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300012202\|Ga0137363_11416583	Not Available	585	Open in IMG/M
3300012205\|Ga0137362_11787427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300012210\|Ga0137378_11030620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300012361\|Ga0137360_11373250	Not Available	609	Open in IMG/M
3300012469\|Ga0150984_112938066	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300012924\|Ga0137413_10791099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728	Open in IMG/M
3300012948\|Ga0126375_10882204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300012960\|Ga0164301_11031082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300012985\|Ga0164308_10547871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300012989\|Ga0164305_10921112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300015373\|Ga0132257_104398449	Not Available	513	Open in IMG/M
3300016294\|Ga0182041_10177156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1675	Open in IMG/M
3300016319\|Ga0182033_10837733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	812	Open in IMG/M
3300016341\|Ga0182035_10220177	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300016341\|Ga0182035_10436079	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300016357\|Ga0182032_11163538	Not Available	663	Open in IMG/M
3300016371\|Ga0182034_10153373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1734	Open in IMG/M
3300016371\|Ga0182034_10483793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1030	Open in IMG/M
3300016371\|Ga0182034_10503664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1010	Open in IMG/M
3300016387\|Ga0182040_10891931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	737	Open in IMG/M
3300016387\|Ga0182040_11448115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300016404\|Ga0182037_11559424	Not Available	587	Open in IMG/M
3300016422\|Ga0182039_10285284	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300016422\|Ga0182039_11302360	Not Available	658	Open in IMG/M
3300018054\|Ga0184621_10301231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300019867\|Ga0193704_1049509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300019878\|Ga0193715_1100539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300020579\|Ga0210407_10461909	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300021178\|Ga0210408_10698870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	799	Open in IMG/M
3300021432\|Ga0210384_10895695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300021560\|Ga0126371_11117468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	927	Open in IMG/M
3300025915\|Ga0207693_10217667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1500	Open in IMG/M
3300025916\|Ga0207663_10175391	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300025916\|Ga0207663_10414885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1032	Open in IMG/M
3300025928\|Ga0207700_11985583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300025929\|Ga0207664_11711490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300026310\|Ga0209239_1206610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700	Open in IMG/M
3300026499\|Ga0257181_1086900	Not Available	545	Open in IMG/M
3300026538\|Ga0209056_10025413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5696	Open in IMG/M
3300026557\|Ga0179587_10554241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300027502\|Ga0209622_1112013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300027681\|Ga0208991_1052842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1227	Open in IMG/M
3300027909\|Ga0209382_12295386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis	507	Open in IMG/M
3300028047\|Ga0209526_10774095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300028536\|Ga0137415_11098505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300028793\|Ga0307299_10183804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	786	Open in IMG/M
3300028793\|Ga0307299_10212698	Not Available	727	Open in IMG/M
3300028796\|Ga0307287_10039851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1701	Open in IMG/M
3300031469\|Ga0170819_12066053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300031545\|Ga0318541_10089521	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300031572\|Ga0318515_10282172	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300031679\|Ga0318561_10027180	All Organisms → cellular organisms → Bacteria	2729	Open in IMG/M
3300031679\|Ga0318561_10032242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2537	Open in IMG/M
3300031679\|Ga0318561_10174513	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300031744\|Ga0306918_10068676	All Organisms → cellular organisms → Bacteria	2423	Open in IMG/M
3300031748\|Ga0318492_10535585	Not Available	622	Open in IMG/M
3300031763\|Ga0318537_10148290	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300031765\|Ga0318554_10051687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2251	Open in IMG/M
3300031768\|Ga0318509_10480659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	694	Open in IMG/M
3300031777\|Ga0318543_10064513	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300031819\|Ga0318568_10055402	All Organisms → cellular organisms → Bacteria	2297	Open in IMG/M
3300031831\|Ga0318564_10128235	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300031845\|Ga0318511_10268140	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300031859\|Ga0318527_10315742	Not Available	665	Open in IMG/M
3300031880\|Ga0318544_10025085	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
3300031890\|Ga0306925_10128021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2721	Open in IMG/M
3300031893\|Ga0318536_10028536	All Organisms → cellular organisms → Bacteria → Proteobacteria	2595	Open in IMG/M
3300031893\|Ga0318536_10692695	Not Available	508	Open in IMG/M
3300031894\|Ga0318522_10391886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300031896\|Ga0318551_10735573	Not Available	572	Open in IMG/M
3300031910\|Ga0306923_10213996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2204	Open in IMG/M
3300031912\|Ga0306921_10188428	All Organisms → cellular organisms → Bacteria	2418	Open in IMG/M
3300031942\|Ga0310916_10116859	All Organisms → cellular organisms → Bacteria	2164	Open in IMG/M
3300031945\|Ga0310913_10107232	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300031946\|Ga0310910_10272847	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300031947\|Ga0310909_10657211	Not Available	873	Open in IMG/M
3300031954\|Ga0306926_10909904	Not Available	1053	Open in IMG/M
3300032001\|Ga0306922_11110000	Not Available	810	Open in IMG/M
3300032010\|Ga0318569_10298019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750	Open in IMG/M
3300032010\|Ga0318569_10381403	Not Available	657	Open in IMG/M
3300032043\|Ga0318556_10029493	All Organisms → cellular organisms → Bacteria	2537	Open in IMG/M
3300032055\|Ga0318575_10000697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8803	Open in IMG/M
3300032066\|Ga0318514_10236030	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300032090\|Ga0318518_10683754	Not Available	522	Open in IMG/M
3300032091\|Ga0318577_10117284	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300032174\|Ga0307470_10737098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	755	Open in IMG/M
3300032180\|Ga0307471_102112696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	708	Open in IMG/M
3300032261\|Ga0306920_100291899	All Organisms → cellular organisms → Bacteria	2429	Open in IMG/M
3300032261\|Ga0306920_102542160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	703	Open in IMG/M
3300033289\|Ga0310914_10115716	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.18%
Host-Associated	Host-Associated	3.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.66%
Plants	Host-Associated → Plants	3.82%
Aquatic	Environmental → Aquatic	1.53%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.05%
Freshwater	Environmental → Aquatic → Freshwater	0.76%
Sediment	Environmental → Aquatic → Sediment	0.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.15%
Loam	Environmental → Terrestrial → Soil → Loam	14.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.29%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.16%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.29%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.76%
Contaminated	Environmental → Terrestrial → Soil → Unclassified → Contaminated	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.53%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.53%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.53%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.76%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Contaminated → Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2084038016	Soil microbial communities from Hopland, California, USA, that is PCE polluted - amended with lactate	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SPCE_L_00120950	2084038016	Soil	RILTTYAINPGGSFVFDSDSKATFRPQRQGVAVKVVLACVQR
KansclcFeb2_02783900	2124908045	Soil	AINPGGTFVFEEDNRATFRPQRQGVAVKVVVACAPK
E1_08537220	2170459002	Grass Soil	MACEENERILNAYAINPGGAFTFDAENKATFRPPRQGVAVKVVLACVQK
AP72_2010_repI_A100DRAFT_10643491	3300000837	Forest Soil	HAINPGGTFVFEDEGRATFRPSRQGVAVKVVVACAPK*
JGI10216J12902_1210762102	3300000956	Soil	DGECRQACTVACEANERILSTHALTPGGTFVFEEDNRATFRPQRQGVAIKVMVACVPK*
Ga0066676_100423775	3300005186	Soil	VACEANERILNSYAINPGGTFVFEEENRATFRPQRQGVTVKVMLACASK*
Ga0066388_1071434991	3300005332	Tropical Forest Soil	CEANERILSTHAINPGGTFVFEDEGRATFRPSRQGVAVKVVVACAPK*
Ga0066388_1081721692	3300005332	Tropical Forest Soil	CTVACEANERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACVPK*
Ga0070713_1005729991	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	CTVACEANERILNMFAIGAGGTFIFEEEARATFLPQRQGAAAKVVLACARK*
Ga0070706_1017839561	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	TVACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK*
Ga0066698_101816394	3300005558	Soil	RILNTYAINPGGTFVFEEDNRATFRPQRQGVTVKVMLACASK*
Ga0066700_103822923	3300005559	Soil	LSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK*
Ga0066905_1002334255	3300005713	Tropical Forest Soil	NTYALGAGGTFVFEDENKATFRPQRRGAAVKVVIACVPK*
Ga0066905_1006620121	3300005713	Tropical Forest Soil	QACTVACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK*
Ga0066903_1006144883	3300005764	Tropical Forest Soil	MSPEEFIRFVDGQCGQPCTVACEANERILDTYAINPGGTFVFEDENRTTFRPEQQSVAVKVGVASVRK*
Ga0066903_1054535061	3300005764	Tropical Forest Soil	CEDNERILNTLAINPGGTFIFDADNKVTFRPQRQGASTKVVLACVPRG*
Ga0066903_1057682852	3300005764	Tropical Forest Soil	ILSTHALNPGGTFVFEEDNRATFRPQRQGVAIKVMVACIPK*
Ga0066903_1057932111	3300005764	Tropical Forest Soil	ECRQACTIACEDNERILNSFAINPGGTFVFDADNKATFRPQRQGVSAKVILACVPRG*
Ga0066903_1058175303	3300005764	Tropical Forest Soil	HAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACVPK*
Ga0075425_1020139521	3300006854	Populus Rhizosphere	CEANERILSTHALNPGGTFIFEEDNRATFRPQRQGVAIKVMVACVPK*
Ga0066710_1018050571	3300009012	Grasslands Soil	EDERILSSHAINPGGTFTFDADNSKATFRPQRQGVLIRVVLACVKK
Ga0099827_114873541	3300009090	Vadose Zone Soil	APCVVACEGDERILSTYALNPGGSFMFEADNRATFRPQQQGVSTKVVLACVPR*
Ga0099792_108156602	3300009143	Vadose Zone Soil	VACEENERILSTYAISPGGTFNFEADNKTTFRPQRQGVSVKVVLACVQK*
Ga0126305_108392681	3300010036	Serpentine Soil	NPGGTFVFEDVNKATFRPQRRGGPAGPAVKVVIACVSK*
Ga0126380_106348451	3300010043	Tropical Forest Soil	CRQACTVACEANERILSTHAINPGGTFFFEDEGRATFRPQRQGVAVKVVVACTPK*
Ga0126380_117683341	3300010043	Tropical Forest Soil	NERILSTHAINPGGTFVFEEDNRATFRPTRQGAAVKVMVACVPK*
Ga0126382_118341931	3300010047	Tropical Forest Soil	ACEANERILSTHAINPGGTFVFEDEARATFRPSRQGVAVKVVVACAPK*
Ga0126382_121595542	3300010047	Tropical Forest Soil	LNPGGTFVFEEDNRATFRPQRQGVAIKVMVACVPK*
Ga0126373_123705941	3300010048	Tropical Forest Soil	NPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK*
Ga0126319_12856201	3300010147	Soil	MACEENERILNAYAINPGGAFTFDAENKATFRPPRQGVAVKVVLACVQK*
Ga0134082_105177181	3300010303	Grasslands Soil	DNERILSFYAINPGGTFSFDADSRKATFRPQRQGVSVKVILACAQN*
Ga0134080_101267141	3300010333	Grasslands Soil	INPGGTFVFEEENRATFRPQRQGVTVKVMLACASK*
Ga0126372_103389381	3300010360	Tropical Forest Soil	NPGGTFVFEDEARATFRPSRQGVAVKVVVACAPK*
Ga0126372_122641272	3300010360	Tropical Forest Soil	VACEANERILTTHALNPGGTFVFEEDNRATFRPQRQGTTVKIVVACVPR*
Ga0126372_123316301	3300010360	Tropical Forest Soil	NPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK*
Ga0126379_138543211	3300010366	Tropical Forest Soil	KENECILSSYAINPGGAFTFDADNRKATFRPQLQGALVKVVEK*
Ga0126381_1011411323	3300010376	Tropical Forest Soil	LSTHALNPGGTFVFEEDNRATFRPQRQGVAIKVMVACVPK*
Ga0126381_1032934791	3300010376	Tropical Forest Soil	ERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVVCAPK*
Ga0137393_114410042	3300011271	Vadose Zone Soil	ACADNERILSAYAITPGGTFIYEADNRATFRPQRPGVAVKVILACIPK*
Ga0137382_111959231	3300012200	Vadose Zone Soil	ACEENELLLTTYAINPGGSFVFDSDSKATFQPQRQGVAVKVVLACVQR*
Ga0137363_114165832	3300012202	Vadose Zone Soil	ACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK*
Ga0137362_117874271	3300012205	Vadose Zone Soil	RILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACTPK*
Ga0137378_110306203	3300012210	Vadose Zone Soil	NPGGTFVFEEENRVTFRPQRQGVAVKVVVACAPK*
Ga0137360_113732501	3300012361	Vadose Zone Soil	CRQACTVACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK*
Ga0150984_1129380663	3300012469	Avena Fatua Rhizosphere	PGGSFVFDADNKATFRPQRQGVSVKVVLACAPKG*
Ga0137413_107910991	3300012924	Vadose Zone Soil	LVDGECSKACVVACEDNERILSTYAINPGGTFTIESETRAIFRPQQQGVAVKVVLTCIPR
Ga0126375_108822042	3300012948	Tropical Forest Soil	LSTHAINPGGTFVFEDEARATFRPSRQGVAVKVVVACAPK*
Ga0164301_110310822	3300012960	Soil	MACEENERILNAYAINPGGAFTFDAENKATFRPSRQGVAVKVVLACVQK*
Ga0164308_105478712	3300012985	Soil	MITTYAINPGGSFVFDADNKATFRPQRQGVLVKVVLACAPKG*
Ga0164305_109211121	3300012989	Soil	ILSTYAINPGGSFVFDADNKATFRPQRQGVSVKVVLACAPKG*
Ga0132257_1043984491	3300015373	Arabidopsis Rhizosphere	RILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK*
Ga0182041_101771561	3300016294	Soil	RILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0182033_108377331	3300016319	Soil	CRQACTVACEANERILTTHAINPGGTFVFEDESRSTFRPQRQGVAVKVVVACAPK
Ga0182035_102201771	3300016341	Soil	QACTVACEANERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0182035_104360791	3300016341	Soil	RILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVVCAPK
Ga0182032_111635381	3300016357	Soil	HAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0182034_101533731	3300016371	Soil	ERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACVPK
Ga0182034_104837931	3300016371	Soil	ERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0182034_105036643	3300016371	Soil	CEANERILTTHAINPGGTFVFEDESRSTFRPQRQGVAVKVVVACAPK
Ga0182040_108919311	3300016387	Soil	LSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0182040_114481151	3300016387	Soil	VDGECRQACTVACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0182037_115594242	3300016404	Soil	CEANERILTTYAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0182039_102852841	3300016422	Soil	HAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAAK
Ga0182039_113023602	3300016422	Soil	DGECRQACTVACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0184621_103012311	3300018054	Groundwater Sediment	SYAINPGGSFVFDSENKATFRPQRQGVAVKVVLACAPKG
Ga0193704_10495092	3300019867	Soil	AYAINPGGAFTFDAENKATFRPPRQGVAVKVVLACVQK
Ga0193715_11005391	3300019878	Soil	NAYAINPGGAFTFDAENKATFRPPRQGVAVKVVLACVQK
Ga0210407_104619093	3300020579	Soil	GECRQACTVACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0210408_106988703	3300021178	Soil	TVACEANERILSTHALNPGGTFVFEEDNRATFRPQRQGVAIKVMVACIPK
Ga0210384_108956951	3300021432	Soil	GEANERILSTHALNPGGTFVFEEDNRATFRPQRQGVAIKVMVACIPK
Ga0126371_111174682	3300021560	Tropical Forest Soil	MSPEEFIRFVDGQCGQPCTVACEANERILDTYAINPGGTFVFEDENRTTFRPEQQSVAVKVGVASVPK
Ga0207693_102176671	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	CTVACEANERILNMFAIGAGGTFIFEEEARATFLPQRQGAAAKVVLACARK
Ga0207663_101753915	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LNPGGTFIFEEDNRATFRPQRQGVAIKVMVACVPK
Ga0207663_104148852	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	ECRQTCTVACEANERILNMFAIGAGGTFIFEEEARATFLPQRQGAAAKVVLACARK
Ga0207700_119855831	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GECRQTCTVACEANERILNMFAIGAGGTFIFEEEARATFLPQRQGAAAKVVLACARK
Ga0207664_117114901	3300025929	Agricultural Soil	VDGECRQACTVSCEANERILSTHALNPGGTFIFEEDNRATFRPQRQGVAIKVMVACVPK
Ga0209239_12066103	3300026310	Grasslands Soil	ACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0257181_10869002	3300026499	Soil	CEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACTPK
Ga0209056_100254138	3300026538	Soil	NSYAINPGGTFVFEEENRATFRPQRQGVTVKVMLACASK
Ga0179587_105542413	3300026557	Vadose Zone Soil	IMACEENERILNAYAINPGGAFTFDAENKATFRPPRQGVAVKVVLACVQK
Ga0209622_11120131	3300027502	Forest Soil	TYAINPGGTFVFEEDNRATFRPQRQGVTVKVMLACASK
Ga0208991_10528424	3300027681	Forest Soil	AINPGASFSFDADNKATFRPQRQGVSIKVVLASGQK
Ga0209382_109789481	3300027909	Populus Rhizosphere	TYAINPGGTFIFDADNKATFRPQRQGASVKVVLACVQK
Ga0209382_122953862	3300027909	Populus Rhizosphere	RQACALSCEDDERILSAYAITPGGTITFEAEQKATFRPQRQGISVKVILACAQK
Ga0209526_107740951	3300028047	Forest Soil	TCDANERIFNTFALTPGGTFVLEEYNRATFRPARQGVSVKVSVACAKS
Ga0137415_110985052	3300028536	Vadose Zone Soil	CTVACEANERILSTHALNPGGTFVFEEDNRATFRPQRQGVAIKVMVACIPK
Ga0307299_101838041	3300028793	Soil	TMNASYAINPGGSFVFDSENKATFRPQRQGVAVKVVLACAPKG
Ga0307299_102126981	3300028793	Soil	TCEDNERILSTYAINPGGSFVFDADNKATFRPQRQGVSVKVVLACAPKG
Ga0307287_100398512	3300028796	Soil	LRENERILNAYAINPGGAFTFDAENKATFRPPRQGVAVKVVLACVQK
Ga0170819_120660531	3300031469	Forest Soil	LNAYAINPGGAFTFDAENKATFRPPRQGVAVKVVLACVQK
Ga0318541_100895215	3300031545	Soil	GTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0318515_102821723	3300031572	Soil	ILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0318561_100271801	3300031679	Soil	ANERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0318561_100322421	3300031679	Soil	ALNPGGTFVFEEDNRATFRPQRQGTTVKIVVACVPR
Ga0318561_101745133	3300031679	Soil	ANERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACVPK
Ga0306918_100686766	3300031744	Soil	STHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAAK
Ga0318492_105355851	3300031748	Soil	ACEANERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACVPK
Ga0318537_101482903	3300031763	Soil	ANERILGTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0318554_100516876	3300031765	Soil	LTTHALNPGGTFVFEEDNRATFRPQRQGTTVKIVVACVPR
Ga0318509_104806593	3300031768	Soil	ANERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAAK
Ga0318543_100645131	3300031777	Soil	STHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0318568_100554021	3300031819	Soil	ACTVACEANERILGTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAAK
Ga0318564_101282353	3300031831	Soil	VACEANERILTTHAINPGGTFVFEDESRATFRPQRQGVAVKVVVACAPK
Ga0318511_102681401	3300031845	Soil	HALNPGGTFVFEEDNRATFRPQRQGTTVKIVVACVPR
Ga0318527_103157421	3300031859	Soil	VNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAAK
Ga0318544_100250856	3300031880	Soil	NERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAAK
Ga0306925_101280211	3300031890	Soil	LGTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0318536_100285366	3300031893	Soil	ACTVACEANERILGTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0318536_106926951	3300031893	Soil	HAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0318522_103918861	3300031894	Soil	TVACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVVCAPK
Ga0318551_107355731	3300031896	Soil	LSIYALNPGGTVVYDSDNRATFRPSRADVTAKVMLACIPK
Ga0306923_102139963	3300031910	Soil	MHGGVDNERILSLYAINPGGTFVYNSDSSAAFRSARVNVAVKVMLACIPK
Ga0306921_101884286	3300031912	Soil	VNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0310916_101168591	3300031942	Soil	CTVACEANERILGTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0310913_101072326	3300031945	Soil	ILTTHAINPGGTFVFEDESRATFRPQRQGVAVKVVVACAPK
Ga0310910_102728474	3300031946	Soil	AVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0310909_106572111	3300031947	Soil	ALNPGGTVVYDSDNRATFRPSRADVTAKVMLACIPK
Ga0306926_109099041	3300031954	Soil	SIYALNPGGTVVYDSDNRATFRPSRADVTAKVMLACIPK
Ga0306922_111100002	3300032001	Soil	YALNPGGTVVYDSDNRATFRPSRADVTAKVMLACIPK
Ga0318569_102980191	3300032010	Soil	NERILGTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0318569_103814032	3300032010	Soil	INPGGTFVFEDEGRATFRPSRQGVAVKVVVACAPK
Ga0318556_100294936	3300032043	Soil	ACTVACEANERILTTHAINPGGTFVFEDESRATFRPQRQGVAVKVVVACAPK
Ga0318575_100006971	3300032055	Soil	ILTTHAINPGGTFVFEDESRSTFRPQRQGVAVKVVVACAPK
Ga0318514_102360303	3300032066	Soil	INPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0318518_106837541	3300032090	Soil	RILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0318577_101172841	3300032091	Soil	TVACEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0307470_107370981	3300032174	Hardwood Forest Soil	TVSCEANERILSTHALNPGGTFIFEEDNRATFRPQRQGVAIKVMVACVPK
Ga0307471_1021126963	3300032180	Hardwood Forest Soil	CEANERILSTHAINPGGTFVFEDEGRATFRPQRQGVAVKVVVACAPK
Ga0306920_1002918996	3300032261	Soil	STLAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAAK
Ga0306920_1025421601	3300032261	Soil	CEANERILSTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK
Ga0310914_101157166	3300033289	Soil	TVACEANERILGTHAVNPGGTFVFEEDGRATFRPQRQGVAVKVVVACAPK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061608

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences