Metagenome / Metatranscriptome Family F061118

Overview

Basic Information

• Family ID: F061118
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 132
• Average Sequence Length: 52 residues
• Representative Sequence: TYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIA
• Number of Associated Samples: 109
• Number of Associated Scaffolds: 131

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 8.40 %
• % of genes near scaffold ends (potentially truncated): 80.30 %
• % of genes from short scaffolds (< 2000 bps): 86.36 %
• Associated GOLD sequencing projects: 98
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (56.061 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.182 % of family members)
• Environment Ontology (ENVO): Unclassified (20.455 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (44.697 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 24.36%
  β-sheet: 0.00%
  Coil/Unstructured: 75.64%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF01042	Ribonuc_L-PSP	6.87
PF00300	His_Phos_1	5.34
PF00089	Trypsin	3.05
PF01966	HD	2.29
PF02586	SRAP	2.29
PF02675	AdoMet_dc	1.53
PF02274	ADI	0.76
PF12244	DUF3606	0.76
PF02735	Ku	0.76
PF13763	DUF4167	0.76
PF05957	DUF883	0.76
PF12697	Abhydrolase_6	0.76
PF07813	LTXXQ	0.76
PF00483	NTP_transferase	0.76
PF13202	EF-hand_5	0.76
PF02637	GatB_Yqey	0.76
PF01464	SLT	0.76
PF03706	LPG_synthase_TM	0.76
PF09538	FYDLN_acid	0.76
PF13406	SLT_2	0.76
PF00313	CSD	0.76
PF03190	Thioredox_DsbH	0.76
PF00211	Guanylate_cyc	0.76
PF00359	PTS_EIIA_2	0.76
PF00270	DEAD	0.76
PF07681	DoxX	0.76
PF03734	YkuD	0.76
PF05532	CsbD	0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	6.87
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.05
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	2.29
COG1586	S-adenosylmethionine decarboxylase	Amino acid transport and metabolism [E]	1.53
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	0.76
COG4874	Uncharacterized conserved protein	Function unknown [S]	0.76
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.76
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.76
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.76
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.76
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.76
COG2511	Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain	Translation, ribosomal structure and biogenesis [J]	0.76
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.76
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.76
COG0064	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	Translation, ribosomal structure and biogenesis [J]	0.76
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.76
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	0.76
COG1610	Uncharacterized conserved protein YqeY, may have tRNA amino acid amidase activity	General function prediction only [R]	0.76
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1331	Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains	General function prediction only [R]	0.76

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
All Organisms	root	All Organisms	43.94 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
cellular organisms	root	All Organisms → cellular organisms	43.94 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.94 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.12 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.58 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.03 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.24 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.76 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	12.12 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.79 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	2.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.76 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	12.12 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	3.79 %
Nitrosococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	2.27 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.06 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	12.12 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	3.79 %
Nitrosococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	2.27 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2067725003|GPWSG_F5G3JLY01A1WYJ	Not Available	513
2162886013|SwBSRL2_contig_8027551	Not Available	800
3300000567|JGI12270J11330_10019405	All Organisms → cellular organisms → Bacteria → Proteobacteria	4245
3300000890|JGI11643J12802_11209717	All Organisms → cellular organisms → Bacteria	595
3300000891|JGI10214J12806_10167894	All Organisms → cellular organisms → Bacteria	1547
3300000891|JGI10214J12806_10696152	Not Available	838
3300004071|Ga0055486_10137702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585
3300004463|Ga0063356_101663989	Not Available	953
3300005186|Ga0066676_11044968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	541
3300005294|Ga0065705_10316849	Not Available	1019
3300005331|Ga0070670_101305890	Not Available	664
3300005338|Ga0068868_100925529	Not Available	794
3300005356|Ga0070674_101391022	Not Available	628
3300005437|Ga0070710_10845474	Not Available	657
3300005440|Ga0070705_100057033	Not Available	2302
3300005530|Ga0070679_100456002	Not Available	1223
3300005719|Ga0068861_101588383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	644
3300005764|Ga0066903_104000321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	790
3300005764|Ga0066903_107840057	Not Available	549
3300006050|Ga0075028_101044326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	510
3300006175|Ga0070712_101074588	Not Available	698
3300006354|Ga0075021_10063322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2153
3300006354|Ga0075021_10095536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1761
3300006845|Ga0075421_102333351	Not Available	561
3300006845|Ga0075421_102333351	Not Available	561
3300006854|Ga0075425_100145055	All Organisms → cellular organisms → Bacteria	2718
3300009148|Ga0105243_12440305	Not Available	561
3300009148|Ga0105243_12999190	Not Available	512
3300009156|Ga0111538_13451339	Not Available	549
3300009156|Ga0111538_13970101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	511
3300009523|Ga0116221_1020024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3533
3300009525|Ga0116220_10084207	Not Available	1341
3300009545|Ga0105237_10667990	Not Available	1046
3300009637|Ga0116118_1216834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595
3300009700|Ga0116217_10413033	Not Available	855
3300009803|Ga0105065_1040786	Not Available	629
3300009824|Ga0116219_10169488	Not Available	1258
3300009839|Ga0116223_10040735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	3090
3300009839|Ga0116223_10155623	Not Available	1417
3300010371|Ga0134125_10279627	Not Available	1854
3300010371|Ga0134125_11789443	Not Available	668
3300010373|Ga0134128_12199942	Not Available	607
3300010375|Ga0105239_10392777	Not Available	1569
3300010375|Ga0105239_10501717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1379
3300010401|Ga0134121_10446304	Not Available	1180
3300012506|Ga0157324_1048324	Not Available	545
3300012929|Ga0137404_11862366	Not Available	560
3300012951|Ga0164300_10412466	Not Available	746
3300012951|Ga0164300_10545111	Not Available	673
3300012951|Ga0164300_11085468	Not Available	522
3300012955|Ga0164298_10138652	Not Available	1349
3300012955|Ga0164298_10143850	Not Available	1330
3300012957|Ga0164303_10686839	Not Available	688
3300012960|Ga0164301_10020178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2966
3300012984|Ga0164309_10365406	Not Available	1064
3300012984|Ga0164309_10593921	Not Available	863
3300012984|Ga0164309_10855227	Not Available	737
3300012985|Ga0164308_11194897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	686
3300012985|Ga0164308_12001678	Not Available	540
3300012986|Ga0164304_10009761	All Organisms → cellular organisms → Bacteria	4192
3300012987|Ga0164307_10019669	All Organisms → cellular organisms → Bacteria	3467
3300012987|Ga0164307_10811117	Not Available	745
3300012987|Ga0164307_11557511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	559
3300012988|Ga0164306_10115182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1780
3300012988|Ga0164306_10134467	Not Available	1665
3300012989|Ga0164305_10044180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2559
3300013102|Ga0157371_10682715	Not Available	768
3300015374|Ga0132255_103748081	Not Available	646
3300016294|Ga0182041_11031977	Not Available	744
3300016319|Ga0182033_12153362	Not Available	509
3300016371|Ga0182034_10525470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	990
3300016422|Ga0182039_10937703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	774
3300016445|Ga0182038_10765211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	845
3300017822|Ga0187802_10206491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	756
3300017974|Ga0187777_11308485	Not Available	533
3300018012|Ga0187810_10297490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	667
3300018078|Ga0184612_10235358	All Organisms → cellular organisms → Bacteria	948
3300018465|Ga0190269_10496378	Not Available	791
3300018920|Ga0190273_12378308	Not Available	503
3300019356|Ga0173481_10496546	Not Available	620
3300022726|Ga0242654_10413239	Not Available	520
3300025898|Ga0207692_11058877	Not Available	536
3300025901|Ga0207688_10198556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1202
3300025914|Ga0207671_10890435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	704
3300025915|Ga0207693_10156376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1793
3300025925|Ga0207650_11605661	Not Available	552
3300025927|Ga0207687_10788927	Not Available	810
3300025937|Ga0207669_10831538	Not Available	767
3300025938|Ga0207704_10995925	Not Available	709
3300025961|Ga0207712_11944930	Not Available	526
3300026041|Ga0207639_10721118	Not Available	926
3300027010|Ga0207839_1031252	Not Available	604
3300027252|Ga0209973_1068799	Not Available	552
3300027680|Ga0207826_1071481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	956
3300027696|Ga0208696_1013856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	3182
3300027854|Ga0209517_10057192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2881
3300027909|Ga0209382_10875482	Not Available	948
3300028587|Ga0247828_10645832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	652
3300030659|Ga0316363_10093651	Not Available	1344
3300031057|Ga0170834_100203413	Not Available	942
3300031226|Ga0307497_10036596	Not Available	1639
3300031356|Ga0307439_1097107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	878
3300031379|Ga0307434_1025232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2018
3300031537|Ga0307419_10306717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564
3300031538|Ga0310888_10155862	Not Available	1222
3300031538|Ga0310888_10669416	Not Available	635
3300031547|Ga0310887_10989309	Not Available	536
3300031716|Ga0310813_11380010	Not Available	653
3300031719|Ga0306917_10743199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	770
3300031833|Ga0310917_10119256	All Organisms → cellular organisms → Bacteria	1716
3300031873|Ga0315297_10425347	All Organisms → cellular organisms → Bacteria → Proteobacteria	1115
3300031890|Ga0306925_10973851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	867
3300031908|Ga0310900_10549111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	906
3300031910|Ga0306923_11741216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	642
3300031913|Ga0310891_10149809	Not Available	756
3300031949|Ga0214473_10630620	All Organisms → cellular organisms → Bacteria	1178
3300031954|Ga0306926_11315743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	843
3300031997|Ga0315278_10171200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2226
3300031999|Ga0315274_11178865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	761
3300032013|Ga0310906_10194896	Not Available	1224
3300032013|Ga0310906_10339999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	973
3300032035|Ga0310911_10146390	All Organisms → cellular organisms → Bacteria	1327
3300032052|Ga0318506_10099096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1244
3300032060|Ga0318505_10348582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	700
3300032160|Ga0311301_10254293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2890
3300032160|Ga0311301_10262193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	2829
3300032261|Ga0306920_102343178	Not Available	738
3300032261|Ga0306920_103924667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	541
3300032397|Ga0315287_10554898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1362
3300032516|Ga0315273_10220211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2590
3300034090|Ga0326723_0143755	Not Available	1046

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.79%
Host-Associated	Host-Associated	21.21%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.91%
Plants	Host-Associated → Plants	21.21%
Aquatic	Environmental → Aquatic	12.88%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.39%
Freshwater	Environmental → Aquatic → Freshwater	6.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.82%
Marine	Environmental → Aquatic → Marine	3.03%
Sediment	Environmental → Aquatic → Sediment	3.03%
Peat	Environmental → Terrestrial → Peat	0.76%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.36%
Loam	Environmental → Terrestrial → Soil → Loam	7.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.06%
Lake	Environmental → Aquatic → Freshwater → Lake	3.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.03%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.03%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.27%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.76%
Sand	Environmental → Terrestrial → Soil → Sand	0.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.03%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.27%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.52%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.52%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.76%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.18%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.06%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.55%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.03%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.03%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.27%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.27%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.52%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.52%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.52%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.76%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.76%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.76%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.76%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2067725003	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300004071	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental
3300031356	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-90	Environmental
3300031379	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220	Environmental
3300031537	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-30	Environmental
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWSG_02036060	2067725003	Soil	VAVQGSEIVVTAPGSDYVMTYHKPADSLKLLAKSFPRKEDRRVTMTLASFLTA
SwBSRL2_0190.00005680	2162886013	Switchgrass Rhizosphere	TYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIA
JGI12270J11330_100194058	3300000567	Peatlands Soil	LAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARELGWIV*
JGI11643J12802_112097173	3300000890	Soil	YHKPADSLKLLAKSFPRKEDRRVSMTLASFLTASYTLANDKARELGWIT*
JGI10214J12806_101678945	3300000891	Soil	LKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIA*
JGI10214J12806_106961521	3300000891	Soil	SDTDYVMIYHKPPNSPQLIAKSFPRKEDRRVPMTLADFLTAAYKLANDKAREVGWIV*
Ga0055486_101377021	3300004071	Natural And Restored Wetlands	MTYYMPADSQKLLAGSFPRKEDRSVSMTLADFLTAAWKLANDKARELGWIT*
Ga0063356_1016639891	3300004463	Arabidopsis Thaliana Rhizosphere	ADSLKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIA*
Ga0066676_110449681	3300005186	Soil	LEIVVIASDTDYRVIYHKPANAPQLIAKSYTRKEDKRAAMTLAEFLIAAWCLANDKARELGWIT*
Ga0065705_103168491	3300005294	Switchgrass Rhizosphere	HKPANSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIA*
Ga0070670_1013058903	3300005331	Switchgrass Rhizosphere	MTYHKPADSLKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIT*
Ga0068868_1009255291	3300005338	Miscanthus Rhizosphere	SEIVITASDTDYAMTYHKPARSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV*
Ga0070674_1013910222	3300005356	Miscanthus Rhizosphere	VAVQGSEIVVTAPGSDYVMTYHKPADSLKLLAKSFPRKEDRRVTVTLASFLTAAYTLANDKAR
Ga0070710_108454741	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	RGSEIVVTASGTDYVMTHHKPETSSELLARSFPRKEDRRVSMTLADFLTAAWKLANDRAPELGWIV*
Ga0070705_1000570334	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	SDYVMTYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIA*
Ga0070679_1004560021	3300005530	Corn Rhizosphere	SDSDYVITYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIA*
Ga0068861_1015883832	3300005719	Switchgrass Rhizosphere	YHKPANSPRLLARSYPRKEDRRVSMTLAGFLTAAYKLANDKARELGWIE*
Ga0066903_1040003212	3300005764	Tropical Forest Soil	MVKYRKPANSPQLLAISFPRKEDGGVSMTLADFPTAAYKLANDKARELGWIA*
Ga0066903_1078400571	3300005764	Tropical Forest Soil	EIVVSASDTDYVMTYHKLDSSPQLIAKSFPRREDRRTSMSLADFLTAACKLANDKARKLGWIA*
Ga0075028_1010443262	3300006050	Watersheds	VQGGEIVVTASNTDYVVTYHKPANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLAKDKARELGWIV*
Ga0070712_1010745881	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MASDTDCVMTYHKPENSPELLARSFARKEDRRVSMTLADFLTAAWKLANDRAPELGWIV*
Ga0075021_100633226	3300006354	Watersheds	NSPQLIAKSYPRKEDRRVSMTLAEFLTAAWGLANDKARELGWIV*
Ga0075021_100955361	3300006354	Watersheds	VTYHKPDNSPQLIAKSYPRKEDRRVSMTLAQFLTTAWGLANDKARELGWIV*
Ga0075421_1023333511	3300006845	Populus Rhizosphere	SGTDYYVVKYHKPANSPQLLARSFPRKEDRGVSMTLADFLTAAYKLANDKAREWGWFA*
Ga0075421_1023333513	3300006845	Populus Rhizosphere	SGTDYYVVKYHKPANSPQLLARSFPRKEDRGVSMTLADFLTAAYKLSNDKAREGGGSHDRST*
Ga0075425_1001450555	3300006854	Populus Rhizosphere	VITYHKPTNSRQLIAKNFPRKEDRRVSMTLADFLTAAYKLANDKAREVGWIA*
Ga0105243_124403053	3300009148	Miscanthus Rhizosphere	QLLARSFPRKEDRRVSMTLADFLTAAYKLANDKARELGWIV*
Ga0105243_129991903	3300009148	Miscanthus Rhizosphere	DTDYAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARDLGWIV*
Ga0111538_134513391	3300009156	Populus Rhizosphere	YHKPANSPQLLARSFPRKEDRGVSMTLADFLTAAYKLSNDKAREGGGSHDRST*
Ga0111538_139701012	3300009156	Populus Rhizosphere	ASGTDYYVVKYHKPANSPQLLARSFPRKEDRGVSMTLADFLTAAYKLANDKARELGWIA*
Ga0116221_10200242	3300009523	Peatlands Soil	VQGGEIVVTASDADYGVTYHKPANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARELGWIV*
Ga0116220_100842072	3300009525	Peatlands Soil	VQGGEIVVTASDADYGVTYHKPANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARAEIAA*
Ga0105237_106679901	3300009545	Corn Rhizosphere	VLGREIVITASDTDYAMTYHKPARSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARD
Ga0116118_10976623	3300009637	Peatland	AKSYPMKNDHRAPMNQAEFLTSAWKLANDKARELGWIV*
Ga0116118_12168342	3300009637	Peatland	QLLAKSYPMKNDHRAPMNQAEFLTSAWKLANDKARELGWIV*
Ga0116217_104130331	3300009700	Peatlands Soil	NSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARAEIAA*
Ga0105065_10407864	3300009803	Groundwater Sand	ARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIV*
Ga0116219_101694882	3300009824	Peatlands Soil	LLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARAEIAA*
Ga0116223_100407351	3300009839	Peatlands Soil	PANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARELGWIV*
Ga0116223_101556231	3300009839	Peatlands Soil	PANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARAEIAA*
Ga0134125_102796272	3300010371	Terrestrial Soil	MITASDSDYAMTYHKPACSPQLLARSFPRKEDRRVSMTLADFLTAAYKLANDKARELGWIV*
Ga0134125_117894433	3300010371	Terrestrial Soil	VMTYHKPADSLKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIA*
Ga0134128_121999421	3300010373	Terrestrial Soil	QLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV*
Ga0105239_103927772	3300010375	Corn Rhizosphere	VLGREIVITASDTDYAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV*
Ga0105239_105017171	3300010375	Corn Rhizosphere	VRGSEIVITASDSDYAMTYHKPANSPRLLARSFPRKEDRRVSMTLAGFLTAAYKLANDKARELGWIE*
Ga0134121_104463041	3300010401	Terrestrial Soil	GSEIVVTASDSDYVITYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIA*
Ga0157324_10483241	3300012506	Arabidopsis Rhizosphere	VRGREIVITASDADYAMTYHKPASSPQLLARSFPRKEDRSVSMTLADFLTAAHKL
Ga0137404_118623661	3300012929	Vadose Zone Soil	VVTASDSDYVMTYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSACELANDKARELGWIA*
Ga0164300_104124662	3300012951	Soil	VITASDSNYVMTYHKPAYSPKLLAKALPRKEDRRVSLTLADLLTAAYKLANDEARELGWIE*
Ga0164300_105451111	3300012951	Soil	YAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIE*
Ga0164300_110854683	3300012951	Soil	YAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARDLGWIV*
Ga0164298_101386521	3300012955	Soil	NSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIA*
Ga0164298_101438503	3300012955	Soil	ANSPQLLARSFPRKEDRRVSMTLADFLTSAFKLANDKARELGWIA*
Ga0164303_106868391	3300012957	Soil	KPPQSPQLLARNFPRKEDRSVSMALADFLTAAYKLANDKARELGWIA*
Ga0164301_100201781	3300012960	Soil	SDYVMTYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAFKLANDKARELGWIA*
Ga0164309_103654063	3300012984	Soil	YHKPANSPQLLARSFARKEDRRVSMTLADFLTSAFKLANDKARELGWIA*
Ga0164309_105939211	3300012984	Soil	VQGSELVITASDSNYVMTYHKPAYSPKLLAKAFPRKEDRRVSMTLADFLTAAYKLANDEARELGWIE*
Ga0164309_108552271	3300012984	Soil	TDYAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV*
Ga0164308_111948972	3300012985	Soil	SHPLIARTYSRKEDRRASMTLATFLTLACKLANDKARELRWIL*
Ga0164308_120016781	3300012985	Soil	VAVQGIEIVVTASDSDYVMTYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSA
Ga0164304_100097611	3300012986	Soil	MTYHKPENSPELLARSFARKEDRRVSMTLADFLTAAWKLANDGERELGWIV*
Ga0164307_100196692	3300012987	Soil	MTYHNPENSPELLARSLPRKEDRRVSMTLADFLTAAWKLANDGARELGWIV*
Ga0164307_108111171	3300012987	Soil	VVTASETDYVMTYHKPVNSPQLLARSFPRKEDRRVSMSLADFLTVACKLANDKAREWIA*
Ga0164307_115575111	3300012987	Soil	KPANSPRLLAKSFPRKEDRRVSMTLAGFLTAAYKLANDKARELGWIE*
Ga0164306_101151821	3300012988	Soil	FPRKEDRRVSMTLAGFLTAAYKLANDKARELGWIE*
Ga0164306_101344674	3300012988	Soil	VLGREIVITASDTDYAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARDLGWIV*
Ga0164305_100441804	3300012989	Soil	YAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV*
Ga0157371_106827151	3300013102	Corn Rhizosphere	ANSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWIA*
Ga0132255_1037480813	3300015374	Arabidopsis Rhizosphere	SCQLIAKSFPRKEDRRVSMTLADFLTAAYKLANDKAREEGWIA*
Ga0182041_110319772	3300016294	Soil	ARSFPRKEDRGVSMTLADFLTAAYKLASDKARELGWIA
Ga0182033_121533621	3300016319	Soil	VSASDTDYVMTYHKPANSPQLLARSFPRREDRRTSMSLADFLTAACKLANDKARELGWIA
Ga0182034_105254701	3300016371	Soil	TYHKPANSPQLLAKSFPRREDRRTSMSLADFLTAACKLTNDKARELGWIA
Ga0182039_109377031	3300016422	Soil	SPQLLARSFPRKEDRGVSMTLADFLTAAYKLANDKARELGWIA
Ga0182038_107652111	3300016445	Soil	VQGSETVVTASDTDYVMTYHKPANSPQLLARSFPRREDRRTSMSLADFLTAACKLANDKARELGWIA
Ga0187802_102064911	3300017822	Freshwater Sediment	KFPRKEDRRVSMTLADFLTAAWKLANDKARELGWIA
Ga0187777_113084852	3300017974	Tropical Peatland	TYHKPANSPQLLAKSYPRKEDRRVSMTLARFLIDASKLANDKARELGWIT
Ga0187810_102974901	3300018012	Freshwater Sediment	YVVTYYKPANTPKLLARKFPRKEDRRVSMTLADFLTAAWKLANDKARELGWIA
Ga0184612_102353581	3300018078	Groundwater Sediment	SDSDYVMTYHKPANFPELLAKNFPRKEDRRVSMTLATFLTAACKLANAKARELGWIE
Ga0190269_104963781	3300018465	Soil	LAKSFPRKEDRRVSMTLASFLTASYTLANDKARELGWIT
Ga0190273_123783081	3300018920	Soil	YHKPADSLKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIT
Ga0173481_104965461	3300019356	Soil	PANSPQLLARSFPRKEDRGILADFLTAAYKLANDKARELGWIA
Ga0242654_104132392	3300022726	Soil	HRHRWQDRRVSMILADFLTAACKLANDKARKLGWIA
Ga0207692_110588773	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	SFARKEDRRVSMTLADFLTAAWKLANDRAPELGWIV
Ga0207688_101985563	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	ASDSDYVMTYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAFKLADYK
Ga0207671_108904351	3300025914	Corn Rhizosphere	YAMTYHKPANSPRLLARSFPRKEDRRVSMTLAGFLTAAYRLANDKARELGWIE
Ga0207693_101563764	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MASDTDCVMTYHKPENSPELLARSFARKEDRRVSMTLADFLTAAWKLANDRAPELGWIV
Ga0207650_116056611	3300025925	Switchgrass Rhizosphere	YVMTYHKPADSLKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIT
Ga0207687_107889271	3300025927	Miscanthus Rhizosphere	VMTYHKPADSLKLLAKTFPRKEDRRVTMTLASFLTAAYTLANDKARELGWII
Ga0207669_108315381	3300025937	Miscanthus Rhizosphere	VVTASDSDYVMTYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAYKLANDKARELGWI
Ga0207704_109959253	3300025938	Miscanthus Rhizosphere	ARSFPRKEDRRVSMTLADFLTAAHKLANDKARDLGWIV
Ga0207712_119449302	3300025961	Switchgrass Rhizosphere	ARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV
Ga0207639_107211183	3300026041	Corn Rhizosphere	YAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV
Ga0207839_10312521	3300027010	Tropical Forest Soil	MTYHKPENSPQLVARSFPRKEDRRVSMSLADFLTAACKLANDKARELGWIK
Ga0209973_10687992	3300027252	Arabidopsis Thaliana Rhizosphere	VVTVSDTDYVMIYHKPPNSPQLIAKSFPRKEDRRVPMTLADFLTAAYKLANDKAREVGWI
Ga0207826_10714812	3300027680	Tropical Forest Soil	SGTDYVVTYHKPANSPQLLAKSYPRKEDKRVSMTLAQFLTDAWKLAKDKARELGWIV
Ga0208696_10138565	3300027696	Peatlands Soil	KSYPRKEDRRVSMTLAQFLTDAWKLANDKARELGWIV
Ga0209517_100571921	3300027854	Peatlands Soil	KPANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARAEIAA
Ga0209382_108754823	3300027909	Populus Rhizosphere	SGTDYYVVKYHKPANSPQLLARSFPRKEDRGVSMTLADFLTAAYKLANDKAREWGWFA
Ga0247828_106458322	3300028587	Soil	VQGCDIVVTASDTDYTVTYHKPANSSQLLAKSYPRKEDRRVSLTLAQFLTDAWKLAKDKASELGW
Ga0316363_100936511	3300030659	Peatlands Soil	PANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARAEIAA
Ga0170834_1002034131	3300031057	Forest Soil	NSPQLLARSFPRKEDRRVSMSLADFLTVACKLANDKAREWIA
Ga0307497_100365961	3300031226	Soil	QLLARSFPRKEDRRVSMTLTDFLTSAFKLANDKARELGWIA
Ga0307439_10971071	3300031356	Salt Marsh	EIVVTAPDSDYVMTYYMPADSLKLLAGSFPRKEDRSVSMTLADFLTAAWKLANDKARELGWIT
Ga0307434_10252324	3300031379	Salt Marsh	LKLLAGSFPRKEDRSVSMTLADFLTAAWKLANDKARELG
Ga0307419_103067173	3300031537	Salt Marsh	YYMPADSLKLLAGSFPRKEDRSVSMTLADFLTAAWKLANAKARELGWIT
Ga0310888_101558621	3300031538	Soil	TFPRKEDRRVTMTLASFLTAAYTLANDKARELGWII
Ga0310888_106694162	3300031538	Soil	VVTASDSDYVMTYHKPANSPQLLARSFPRKEDRRVSMTLADFLTAAWKLANDKARQ
Ga0310887_109893092	3300031547	Soil	PQLLARSFPRKEDRRVSMTLADFLTSAFKLANDKARELGWIA
Ga0310813_113800101	3300031716	Soil	VITASDADYAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWI
Ga0306917_107431992	3300031719	Soil	VTYDKPANTSQLLAKSYPKKEDRRVSMTLAQFLTDAWKLAKDKARELGWIA
Ga0310917_101192563	3300031833	Soil	VTYDKPANTSQLLAKSYPKKEDRRVSMTLAQFLTDAWKLAKDKARELGWIV
Ga0315297_104253472	3300031873	Sediment	SPQLIAKSYPRKEDRRVSMTLAEFLTASWKLANNKVRELGWIV
Ga0306925_109738512	3300031890	Soil	VTYHKPANTSQLLAKSYPKKEDRRVSMTLAQFLTDAWKLAKDKARELGWIA
Ga0310900_105491111	3300031908	Soil	MTYHKPANSPQLLARSFPRKEDRRVSMTLADFLTSAFKLANDKARELGWIA
Ga0306923_117412162	3300031910	Soil	VTYHKPANTSQLLAKSYPKKEDRRVSMTLAQFLTDAWKLAKDKARELGWIV
Ga0310891_101498093	3300031913	Soil	VTAPGSDYVMTYHKPADSLKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIT
Ga0214473_106306201	3300031949	Soil	QGSEIVVTAPGSDYVMTYHKPADSLKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIT
Ga0306926_113157432	3300031954	Soil	VTYDKPANTSQLLAKSYPKKEDRRVSMTLAQFLTDAWTLAKDKARELGWIA
Ga0315278_101712005	3300031997	Sediment	EISVTASDTDYVVTYHKPANSPQLLAKSYPRKEDRRVSMTLAEFLTAAWKLANDKARELGWIV
Ga0315274_111788651	3300031999	Sediment	SPQLLAKSYPRKEDRRVSMTLAEFLTAAWKLANDKARELGWIV
Ga0310906_101948961	3300032013	Soil	PGSDYVMTYHKPADSLKLLAKTFPRKEDRRVTMTLASFLTAAYTLANDKARELGWII
Ga0310906_103399993	3300032013	Soil	VRGREIVITASDADYAMTNHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV
Ga0310911_101463901	3300032035	Soil	VVKYHKPANSPQLLARSFPRKEDRGISMTLADFLTAAYKLANDKARELGWIA
Ga0318506_100990964	3300032052	Soil	VMTYHKPANSPQLLARSFPRREDRRTSMSLADFLTAACKLANDKARELGWIA
Ga0318505_103485821	3300032060	Soil	SQLLAKSYPKKEDRRVSMTLAQFLTDAWKLAKDKARELGWIV
Ga0311301_102542931	3300032160	Peatlands Soil	HKPANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARAEIAA
Ga0311301_102621931	3300032160	Peatlands Soil	HKPANSPQLLAKSYPRKEDRRVSMTLAQFLTDAWKLANDKARELGWIV
Ga0306920_1023431781	3300032261	Soil	VKYHKPANSSQLLARSFPRKEDRGVSMTLADFLTAAYKLANDKARELGWIA
Ga0306920_1039246671	3300032261	Soil	RVTYDKPANTSQLLAKSYPKKEDRRVSMTLAQFLTDAWKLAKDKARELGWIA
Ga0315287_105548981	3300032397	Sediment	VVTYHKPANSPQLLAKSYPRKEDRRVSMTLAEFLTAAWKLANDKARELGWIV
Ga0315273_102202111	3300032516	Sediment	TASDSDYVVTYHKPDNSPQLIAKSYPRKEDRRVSMTLAEFLMASWKLANNKARELGWIV
Ga0326723_0143755_818_1021	3300034090	Peat Soil	VRGSEIVVTASDADYAMTYHKPASSPQLLARSFPRKEDRRVSMTLADFLTAAHKLANDKARELGWIV