Metagenome / Metatranscriptome Family F060878

Overview

Basic Information

• Family ID: F060878
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 132
• Average Sequence Length: 44 residues
• Representative Sequence: GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
• Number of Associated Samples: 96
• Number of Associated Scaffolds: 132

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.76 %
• % of genes near scaffold ends (potentially truncated): 99.24 %
• % of genes from short scaffolds (< 2000 bps): 90.91 %
• Associated GOLD sequencing projects: 91
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (94.697 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.879 % of family members)
• Environment Ontology (ENVO): Unclassified (31.061 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (54.545 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 32.56%
  β-sheet: 34.88%
  Coil/Unstructured: 32.56%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF00274	Glycolytic	3.79
PF00578	AhpC-TSA	3.79
PF01022	HTH_5	3.03
PF00903	Glyoxalase	2.27
PF12681	Glyoxalase_2	1.52
PF07885	Ion_trans_2	1.52
PF01432	Peptidase_M3	1.52
PF03861	ANTAR	1.52
PF06897	DUF1269	1.52
PF01883	FeS_assembly_P	1.52

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	3.79
COG4803	Uncharacterized membrane protein	Function unknown [S]	1.52
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	1.52
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	1.52
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	1.52
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	1.52
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.76
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.76
COG4330	Uncharacterized membrane protein, DUF1361 domain	Function unknown [S]	0.76
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.76

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.70 %
Unclassified	root	N/A	5.30 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.70 %
Unclassified	root	N/A	5.30 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.70 %
Unclassified	root	N/A	5.30 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	74.24 %
Unclassified	root	N/A	5.30 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	69.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.76 %
Unclassified	root	N/A	5.30 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43.18 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.55 %
Unclassified	root	N/A	5.30 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.76 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.52 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.76 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.27 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.76 %
Unclassified	root	N/A	5.30 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	30.30 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.52 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.30 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.52 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.76 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.76 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.76 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.52 %
Unclassified	root	N/A	5.30 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.76 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.30 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.76 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	1.52 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.76 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.52 %
Unclassified	root	N/A	5.30 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.76 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.30 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.76 %
Rhodococcus pyridinivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus pyridinivorans	0.76 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.76 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.76 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.52 %
Unclassified	root	N/A	5.30 %
unclassified Rhodococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus	0.76 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.30 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.76 %
Rhodococcus pyridinivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus pyridinivorans	0.76 %
Rhodococcus sp. RD6.2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. RD6.2	0.76 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.76 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.76 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.52 %
Unclassified	root	N/A	5.30 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000891|JGI10214J12806_10345336	All Organisms → cellular organisms → Bacteria	1884
3300000956|JGI10216J12902_112500815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1308
3300002459|JGI24751J29686_10069097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	728
3300002568|C688J35102_118830308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602
3300002908|JGI25382J43887_10275157	All Organisms → cellular organisms → Bacteria	758
3300004114|Ga0062593_100759166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	957
3300004114|Ga0062593_100903447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus pyridinivorans	893
3300004156|Ga0062589_100278129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1277
3300004156|Ga0062589_101196624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	727
3300004156|Ga0062589_102836854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.58%
Host-Associated	Host-Associated	42.42%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.52%
Plants	Host-Associated → Plants	42.42%
Terrestrial	Environmental → Terrestrial	56.06%

Category

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.24%
Sediment	Environmental → Aquatic → Sediment	1.52%
Soil	Environmental → Terrestrial → Soil	56.06%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.58%
Loam	Environmental → Terrestrial → Soil → Loam	9.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.52%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.58%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.52%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	10.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.06%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.33%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.52%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.79%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_103453361	3300000891	Soil	DAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
JGI10216J12902_1125008153	3300000956	Soil	GPATGAFYASLDDAGKVTLRDTVRASLPQGPFTLPARAWLALGTVPG*
JGI24751J29686_100690971	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	GPATSAFYGSLDDAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR*
C688J35102_1188303082	3300002568	Soil	PATGAFYASLDDAGKARLRETLRASLPEGPFTLPARAWLALGIVPG*
JGI25382J43887_102751572	3300002908	Grasslands Soil	PFTGAAGPATGAFCASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0062593_1007591662	3300004114	Soil	EPFTGAAGPATGAFYASLDAAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
Ga0062593_1009034471	3300004114	Soil	AGPATGAFYASLDDAGKATLRDTVRASLPEGRFTLQARAWLALGTVPG*
Ga0062589_1002781291	3300004156	Soil	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0062589_1011966242	3300004156	Soil	GAAGPATGAFYASLDAAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
Ga0062589_1028368542	3300004156	Soil	DDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPPAEL*
Ga0062590_1004546771	3300004157	Soil	AAGPATGAFYASLDDAGKATLRDTVRASLPAGPFTLPARAWLALGTVPG*
Ga0062590_1006023423	3300004157	Soil	ASLDAAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
Ga0062595_1001921511	3300004479	Soil	FYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTKRSRTA*
Ga0062595_1009096761	3300004479	Soil	FYASLDDAGKATLRDTVRAALPEGPFTLPARAWLALGTVPG*
Ga0062595_1012084011	3300004479	Soil	PATGAFYASLDDAGKATLRETVRASLPEGPFTLPARAWLALGTVPG*
Ga0062592_1002840873	3300004480	Soil	GAFYASLDAAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
Ga0062591_1002882913	3300004643	Soil	AFYASLDDAGKATLRDTVRAALPEGPFTLPARAWLALGTVPG*
Ga0066676_102097361	3300005186	Soil	AFYASLEDAGKATLRDTVRVSLPEGPFTLPARAWLALGTVPG*
Ga0070683_1002888931	3300005329	Corn Rhizosphere	AGPATGAFYASLDDAGKATLRDTVRAALPEGPFTLPARAWLALGTVPG*
Ga0066388_1057083381	3300005332	Tropical Forest Soil	GGAGPATGAFYASLDDAGKATLRDTVRASLPEGPFALPGRAWLALGTVPG*
Ga0070671_1010678961	3300005355	Switchgrass Rhizosphere	AFYASLDDAGKVTLRDTVRASLPDGPFTMPARAWLALGTVPG*
Ga0070714_1002380281	3300005435	Agricultural Soil	YASLDDAGRATLRDAVRASLPESPFTLPARAWLALGTVPG*
Ga0070710_109424202	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ATGAFYASLDDAGKATLRDTVRVSLPEGPFTLPARAWLALGTVPG*
Ga0070705_1013431721	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GAFYASLDDAGKASLRDTVRDSLPEGPFTLPARAWLALGTVPG*
Ga0066681_108164062	3300005451	Soil	ASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0070672_1006291394	3300005543	Miscanthus Rhizosphere	SLDDAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR*
Ga0070665_1016548211	3300005548	Switchgrass Rhizosphere	AGPATGAFYASLDDAGKATLRDTVRASLPKGPFTLPARAWLALGTVPG*
Ga0066692_102485572	3300005555	Soil	AGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0068855_1026219571	3300005563	Corn Rhizosphere	GGGGPASGAFYASLDDAGRATLRDAVRASLPESPFTLPARAWLALGTVPA*
Ga0070664_1014738891	3300005564	Corn Rhizosphere	GSGGPSTGAFYDSLDDAGKATLRETVRASLPEGPFTLPARAWLALGTVPS*
Ga0068859_1001943841	3300005617	Switchgrass Rhizosphere	ATGAFYASLDDAGKASLRDTVRDSLPEGPFTLPARAWLALGTVPG*
Ga0068863_1022763881	3300005841	Switchgrass Rhizosphere	FYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0070717_100498668	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DDAGKATLRDTVRASLPEGPFTLSARAWLALGTVPG*
Ga0066651_105009191	3300006031	Soil	AFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0066656_110562902	3300006034	Soil	AAGPATGAFYASLDDAGKVTLRDTVRASLPQGPFTLPARAWLALGTVPG*
Ga0074048_100327721	3300006581	Soil	SLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0074060_116866843	3300006604	Soil	TGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0079221_109244842	3300006804	Agricultural Soil	SGGPSTGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPGFSA*
Ga0075428_1019774311	3300006844	Populus Rhizosphere	AFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPGFKP*
Ga0075433_102873854	3300006852	Populus Rhizosphere	SLDDAGKATLRDTVRASLPEAPFTLPARAWLALGTVVG*
Ga0075420_1000580016	3300006853	Populus Rhizosphere	LDDAGKATLRDTVRASLPQGPFTLPARAWIALGTVPG*
Ga0075434_1007053301	3300006871	Populus Rhizosphere	GAAGPATGAFYASLDDAGKATLRDTVRASLPQGPFTLPARAWLALGTVPG*
Ga0075419_102857791	3300006969	Populus Rhizosphere	ASLDDAGKATLRDTVRASLPQGPFTLPARAWIALGTVPG*
Ga0075435_1018180592	3300007076	Populus Rhizosphere	SLDDAGKATLRDTVRISLPEGPFTLPARAWLALGTVTG*
Ga0105240_107986721	3300009093	Corn Rhizosphere	DAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR*
Ga0105240_125556961	3300009093	Corn Rhizosphere	TGAFYDSLDDAGKATLRETVRASLPEGPFTLPARAWLALGTVPS*
Ga0105245_101733114	3300009098	Miscanthus Rhizosphere	PFTGGGGPASGAFYDSLDDAGKATLRDSVRASLPEAPFTLPARAWLALGTVPG*
Ga0105247_100149668	3300009101	Switchgrass Rhizosphere	LDDAGKASLRDTVRDSLPEGPFTLPARAWLALGTVPG*
Ga0066709_1014147761	3300009137	Grasslands Soil	TGAAGPATGAFYASLDDAGKATLRNTVRASLPEGPFTLPARAWLALGTVPGL*
Ga0114129_102503311	3300009147	Populus Rhizosphere	SLDDAGKATLRDTVRASLPEGPFTLRARAWLALGTVPG*
Ga0114129_108620431	3300009147	Populus Rhizosphere	DDAGKAALRDTARASLPEGPFTLPARAWLALGTVPG*
Ga0114129_109396631	3300009147	Populus Rhizosphere	DDPGKATMRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0105248_105995191	3300009177	Switchgrass Rhizosphere	GAFYDSLDDAGKATLRETVRASLPEGPFTLPARAWLALGTVPS*
Ga0105237_110748971	3300009545	Corn Rhizosphere	AGKATLRETVRASLPEGPFTLPARAWLALGTVPS*
Ga0126315_109261583	3300010038	Serpentine Soil	LDDAGKATLRDTVRSSLPEGPFTLPARAWLALGTAPG*
Ga0134080_106606181	3300010333	Grasslands Soil	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0105239_110992331	3300010375	Corn Rhizosphere	PATGAFYASLDDAGKATLRDGVRGSLPEGPFTLPARAWLAIGTVPG*
Ga0105246_125843971	3300011119	Miscanthus Rhizosphere	GAFYASLEDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0137391_113397631	3300011270	Vadose Zone Soil	EPFTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0137438_10442882	3300011431	Soil	DDAGKATLRDTVRASVPEGPFTLEARAWLALGTVPH*
Ga0137381_109434962	3300012207	Vadose Zone Soil	DDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0137366_100208288	3300012354	Vadose Zone Soil	TGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0137366_111999772	3300012354	Vadose Zone Soil	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPA*
Ga0157298_102722791	3300012913	Soil	DDAGKVTLRDTVRASLPDGPFTMPARAWLALGTVPG*
Ga0157297_102151401	3300012914	Soil	PATGAFYASLDDADKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0137395_109948781	3300012917	Vadose Zone Soil	TGAAGPATGAFYASLDDAGKSTLRDTVRASLPEVPFTLPARAWLALGTVPG*
Ga0164300_105775441	3300012951	Soil	SLDDAGKETLRETVRAFLPDGPFTLPARAWLALGSVAR*
Ga0164298_108257112	3300012955	Soil	WKPFTGAAGPATGAFYASLDHAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0164303_109209752	3300012957	Soil	YASLDDAGKETLRETVRAFLPDGPFTLPARAWLALGTVAR*
Ga0164308_109303153	3300012985	Soil	EPFTGAAGPATGAFYASLDDAGKATLRHTVRASLPEGPFTLPARAWLALGTVPG*
Ga0164308_118124061	3300012985	Soil	DSLDDAGKATLRDSVRDSLPEAPFTLPARAWLALGTVPG*
Ga0164304_111224192	3300012986	Soil	YDSLDDAGKATLRDSVRDSLPEAPFTLPARAWLALGTVPG*
Ga0164304_113148652	3300012986	Soil	ASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVSG*
Ga0164304_115486613	3300012986	Soil	PATGAFYASLDDAGKATLRDSVRASLPEAPFTLPARAWLALGSVPG*
Ga0164307_106971432	3300012987	Soil	FYAGLDDANKAVLRDTVRTSLPEGPFTLPARAWLAIGTVPG*
Ga0164307_115274321	3300012987	Soil	AGPATGAFYASLDDDDKATLRDTVHASLPEGPFTLPARAWLALGTVPG*
Ga0164305_105510891	3300012989	Soil	PFTGGGGPASGAFYDSLDDAGKATLRDTVRASLPEAPFTLPARAWLALGTVPG*
Ga0164305_112565473	3300012989	Soil	AGPATGAFYASLDDGGKATLRDTVRASLPEGPFTLPARAWLALGTVPERR*
Ga0164305_120905701	3300012989	Soil	LDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0163162_115697361	3300013306	Switchgrass Rhizosphere	PATGAFYASLDDAGQATLRDTVRAALPEGPFTLPARAWLALGTVPG*
Ga0163162_127876791	3300013306	Switchgrass Rhizosphere	PFTGAAGPATGAFYASLDDAGQATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0134079_107387191	3300014166	Grasslands Soil	DDAGKATLRDTVRASLPEGPFTLPARAWLAVGTVPG*
Ga0173478_101569353	3300015201	Soil	DARRATGAFHASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132258_105898784	3300015371	Arabidopsis Rhizosphere	AGKATLRDTVRASLPEGPFTLPARAWLALGTAAG*
Ga0132258_109302041	3300015371	Arabidopsis Rhizosphere	DDAGKATLRDTVRSSLPAGAFTLTARAWLALGTVPG*
Ga0132258_114473571	3300015371	Arabidopsis Rhizosphere	SLDDAGKATLRDTVRASLPEGPFTLPAPAWLALGTVPGK*
Ga0132258_125179301	3300015371	Arabidopsis Rhizosphere	SGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132258_126510201	3300015371	Arabidopsis Rhizosphere	GPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132258_128231662	3300015371	Arabidopsis Rhizosphere	AALIGMLVAAATGAFYASLDDAGKATLRDTVRASLPEAPFTLPARAWLALGTVPG*
Ga0132256_1001977214	3300015372	Arabidopsis Rhizosphere	ATGAFYASLDDAGKATLRDTARASLPQGPFTLPARAWLALGTVPG*
Ga0132256_1002674861	3300015372	Arabidopsis Rhizosphere	FYASLDNVGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132256_1009490741	3300015372	Arabidopsis Rhizosphere	AGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132256_1025625652	3300015372	Arabidopsis Rhizosphere	YASLDDAGKAILRDTVRASLPEAPFTLSARAWLALGTVPGYQGLS*
Ga0132256_1029089321	3300015372	Arabidopsis Rhizosphere	AFYASLDDPGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132256_1031694872	3300015372	Arabidopsis Rhizosphere	LDDAGKATLRDTVRDSLPEGPFTLPARAWLALGTVPG*
Ga0132257_1002523441	3300015373	Arabidopsis Rhizosphere	SLDDAGKATLRDSVRASLPEGAFTLPARAWLALGTVPG*
Ga0132257_1009486731	3300015373	Arabidopsis Rhizosphere	PFTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132257_1019812921	3300015373	Arabidopsis Rhizosphere	LDDSGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132257_1045456381	3300015373	Arabidopsis Rhizosphere	PASGAFYASLDDAGKATLRDTVRASLPDAPFTLQGRAWLALGVVPA*
Ga0132255_1038289192	3300015374	Arabidopsis Rhizosphere	FTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132255_1040084272	3300015374	Arabidopsis Rhizosphere	YASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132255_1051187211	3300015374	Arabidopsis Rhizosphere	AGKATLRDTVRASLPEGPFTLPARAWLALGTIPG*
Ga0132255_1059425992	3300015374	Arabidopsis Rhizosphere	MDEIALRDMVRASLPEGSFTLSARAWLALGTVPG*
Ga0134069_13620322	3300017654	Grasslands Soil	PFTGAAGPATGAFYASLDDAGKVTLRDAVRASLPEGPFTLPARAWLALGTVPG
Ga0184625_106144821	3300018081	Groundwater Sediment	ATGAFYASLDDAGKATLRDTVCASLPEGPFTLPARAWLALGTVPG
Ga0066669_105236032	3300018482	Grasslands Soil	DDAGKVTLRDAVRASLPEGPFTLPARAWLALGTVPG
Ga0126371_104329673	3300021560	Tropical Forest Soil	YSSLDDAGKATLRDNVRASLPEGPFTLPARAWLALGTVPG
Ga0247745_10568422	3300022898	Soil	FYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0207692_102877983	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPERR
Ga0207643_105038212	3300025908	Miscanthus Rhizosphere	EPFTAGGGPSTGAFYASLDHAGKATLRDTVRASLPEGAFTLPARAWLALGTVPG
Ga0207663_105949061	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AAGPATGAFYASLDDAGKASLRDTVRDSLPEGPFTLPARAWLALGTVPG
Ga0207694_101584685	3300025924	Corn Rhizosphere	PFTGGGGPATSAFYGSLDDAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR
Ga0207665_104524701	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	TGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPERR
Ga0207665_105336281	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DAGKATLRHTVRASLPKGPFTLPARAWLALGTVPG
Ga0207665_111445662	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	SLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPGFSA
Ga0207691_104292044	3300025940	Miscanthus Rhizosphere	TSAFYGSLDDAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR
Ga0207711_102277904	3300025941	Switchgrass Rhizosphere	EPFTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPS
Ga0207661_100723334	3300025944	Corn Rhizosphere	FYASLDDAGKATLRDTVRAALPEGPFTLPARAWLALGTVPG
Ga0207648_104544823	3300026089	Miscanthus Rhizosphere	PFTGGAGPASGAFYASLEDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0207676_124590221	3300026095	Switchgrass Rhizosphere	ATAPFYASRDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0209382_107929323	3300027909	Populus Rhizosphere	FTGAAGPATGAFYASLDDAGKATLRDTVRASLPQGPFTLPARAWIALGTVPG
Ga0209382_109718992	3300027909	Populus Rhizosphere	FTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0268264_107837173	3300028381	Switchgrass Rhizosphere	ATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0307498_101294671	3300031170	Soil	AGPATGAFYASLDDAGRATLRDIVRASLPEGPFTLPARAWLALGAVPG
Ga0170818_1102442901	3300031474	Forest Soil	IGAFYASLDDAGKATLRDSVRASLPEGPFTLPARAWLALGTVPG
Ga0310887_104675962	3300031547	Soil	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0318554_107040193	3300031765	Soil	FYDSLDDAGKATLRDSVRASLPEGPFTLPARAWLALGTVPG
Ga0310900_102816861	3300031908	Soil	SLDDAGKATLRDTVRASLPERPFTLPARAWLALGTVPG
Ga0306921_104442721	3300031912	Soil	GPATGAFYASLDDAGKATLRAKVHASLPEGSFTLQARAWLALGSAPG
Ga0318569_105095322	3300032010	Soil	STGAFYASLDDAGKTTLRDTVRASLPEGPFTLPARAWLALGTAPG
Ga0318570_101567521	3300032054	Soil	ASLDDAGKATLRAKVHASLPEGSFTLQARAWLALGSAPG
Ga0307471_1043439562	3300032180	Hardwood Forest Soil	PFTGAAGPATGAFYASHDDAGKATLRDTVRISLPEGPFTLPARAWLALGTVTG