Metagenome / Metatranscriptome Family F060824

Basic Information
Family ID	F060824
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	46 residues
Representative Sequence	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETKVFVVISK
Number of Associated Samples	104
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	14.50 %
% of genes near scaffold ends (potentially truncated)	98.48 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (53.030 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (24.242 % of family members)
Environment Ontology (ENVO)	Unclassified (46.970 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (43.939 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1B570J40625_1012002002 2B570J40625_1015205981 3JGI25909J50240_11066371 4JGI25907J50239_10114731 5JGI25907J50239_10391883 6JGI25912J50252_100150704 7Ga0068872_105339532 8Ga0049080_101405211 9Ga0078894_102438983 10Ga0098038_10823591 11Ga0098055_10756153 12Ga0102821_10156714 13Ga0105746_12386491 14Ga0105748_104988382 15Ga0114341_104889211 16Ga0102830_10408853 17Ga0102815_105437971 18Ga0105097_100579914 19Ga0114971_103171271 20Ga0114925_109286082 21Ga0115013_100720994 22Ga0098061_10218944 23Ga0129333_114426291 24Ga0172362_105089911 25Ga0177922_103280371 26Ga0181338_10337861 27Ga0181338_10382222 28Ga0181339_10131741 29Ga0181350_10389741 30Ga0181350_10535111 31Ga0181365_10726683 32Ga0181421_10305593 33Ga0181344_10455193 34Ga0181344_10890133 35Ga0181356_12107531 36Ga0181343_10650413 37Ga0181358_11071103 38Ga0181349_11115383 39Ga0181349_11668153 40Ga0181349_11810881 41Ga0181346_11261061 42Ga0181348_10472123 43Ga0169931_102353883 44Ga0181361_1100741 45Ga0181361_1173131 46Ga0181361_1205242 47Ga0208600_10146251 48Ga0208485_10262023 49Ga0208485_10408091 50Ga0222712_106248682 51Ga0181351_11224121 52Ga0181351_11832473 53Ga0181351_11859801 54Ga0255040_100307984 55Ga0255039_100144854 56Ga0210003_12288082 57Ga0255042_101053431 58Ga0255042_101807651 59Ga0255044_103211251 60Ga0255283_11243192 61Ga0208767_11656961 62Ga0255269_11024633 63Ga0255102_10353301 64Ga0208673_10238413 65Ga0208555_10094391 66Ga0208975_10717021 67Ga0209443_11159211 68Ga0209355_11272811 69Ga0209597_10563771 70Ga0209353_101225393 71Ga0209354_100406864 72Ga0209503_101791371 73Ga0209293_104402222 74Ga0209668_106832981 75Ga0209253_102180313 76Ga0233413_102739622 77Ga0233414_104873682 78Ga0304728_10554991 79Ga0247840_102899993 80Ga0183683_10307341 81Ga0307380_102926183 82Ga0307380_105432221 83Ga0307378_103845241 84Ga0307378_107397611 85Ga0307376_102836051 86Ga0307375_103762351 87Ga0307375_106321492 88Ga0307377_102929283 89Ga0307377_104494431 90Ga0307377_111105411 91Ga0315291_115937682 92Ga0315293_103564321 93Ga0315293_103773291 94Ga0315293_106062211 95Ga0315288_105439231 96Ga0315288_114403823 97Ga0315899_114797141 98Ga0315290_106297563 99Ga0315909_100713321 100Ga0315909_109911391 101Ga0315285_106607182 102Ga0315294_104528994 103Ga0315294_111184082 104Ga0315294_112464542 105Ga0315901_112348341 106Ga0315274_106169403 107Ga0315274_111697891 108Ga0315284_103569444 109Ga0315284_122801081 110Ga0315284_123109792 111Ga0315905_115629661 112Ga0315292_108394183 113Ga0315273_109901161 114Ga0334980_0396208_3_140 115Ga0334996_0180428_2_169 116Ga0334979_0260099_883_999 117Ga0334986_0313880_1_156 118Ga0334985_0062575_3_143 119Ga0334998_0728312_3_143 120Ga0334983_0691318_384_542 121Ga0334995_0000899_1_123 122Ga0335000_0283897_882_1025 123Ga0335022_0493606_479_640 124Ga0335029_0390694_717_842 125Ga0335035_0439035_3_134 126Ga0335050_0392290_1_132 127Ga0335051_0096765_1_135 128Ga0335055_0209085_730_861 129Ga0335033_0332583_1_138 130Ga0335065_0128495_1590_1703 131Ga0335052_0021581_3857_4021 132Ga0335052_0223496_968_1072
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1B570J40625_1012002002 2JGI25909J50240_11066371 3JGI25907J50239_10391883 4Ga0068872_105339532 5Ga0078894_102438983 6Ga0098038_10823591 7Ga0098055_10756153 8Ga0102821_10156714 9Ga0105746_12386491 10Ga0105748_104988382 11Ga0114341_104889211 12Ga0114925_109286082 13Ga0115013_100720994 14Ga0098061_10218944 15Ga0172362_105089911 16Ga0181338_10337861 17Ga0181338_10382222 18Ga0181356_12107531 19Ga0181361_1100741 20Ga0181361_1205242 21Ga0208485_10408091 22Ga0255042_101807651 23Ga0208767_11656961 24Ga0208975_10717021 25Ga0209503_101791371 26Ga0209293_104402222 27Ga0233414_104873682 28Ga0304728_10554991 29Ga0315291_115937682 30Ga0315909_100713321 31Ga0315909_109911391 32Ga0315274_111697891 33Ga0334998_0728312_3_143 34Ga0335029_0390694_717_842 35Ga0335055_0209085_730_861
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1Ga0181361_1173131 2B570J40625_1012002002 3Ga0078894_102438983 4Ga0098055_10756153 5Ga0102821_10156714 6Ga0102815_105437971 7Ga0114925_109286082 8Ga0115013_100720994 9Ga0098061_10218944 10Ga0129333_114426291 11Ga0177922_103280371 12Ga0181338_10337861 13Ga0181338_10382222 14Ga0181350_10535111 15Ga0181343_10650413 16Ga0169931_102353883 17Ga0181361_1205242 18Ga0208600_10146251 19Ga0208485_10262023 20Ga0255042_101807651 21Ga0255102_10353301 22Ga0208555_10094391 23Ga0209503_101791371 24Ga0209293_104402222 25Ga0233413_102739622 26Ga0233414_104873682 27Ga0304728_10554991 28Ga0183683_10307341 29Ga0307380_102926183 30Ga0307380_105432221 31Ga0307376_102836051 32Ga0307377_104494431 33Ga0307377_111105411 34Ga0315293_103564321 35Ga0315293_103773291 36Ga0315288_114403823 37Ga0315274_106169403 38Ga0315284_103569444 39Ga0334980_0396208_3_140 40Ga0334996_0180428_2_169 41Ga0334998_0728312_3_143 42Ga0335022_0493606_479_640 43Ga0335029_0390694_717_842 44Ga0335055_0209085_730_861
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 37.33% Coil/Unstructured: 62.67%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF12705	PDDEXK_1	18.94
PF12684	DUF3799	2.27
PF02617	ClpS	0.76
PF00268	Ribonuc_red_sm	0.76
PF13646	HEAT_2	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	0.76
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	0.76

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	46.97 %
Unclassified	root	N/A	53.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	41.67 %
Unclassified	root	N/A	53.03 %
Viruses	superkingdom	All Organisms → Viruses	5.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.67 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	53.03 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.76 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	7.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	53.03 %

Name	Rank	Taxonomy	Distribution
Nitrospinae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae	7.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	53.03 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.76 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	53.03 %
unclassified Nitrospinota	no rank	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota	7.58 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.76 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	7.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	53.03 %

Name	Rank	Taxonomy	Distribution
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	7.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	53.03 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.76 %

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013133\|Ga0172362_10508991	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
(restricted) 3300024059\|Ga0255040_10030798	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
(restricted) 3300024062\|Ga0255039_10014485	All Organisms → cellular organisms → Bacteria	2743	Open in IMG/M
(restricted) 3300024340\|Ga0255042_10105343	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
(restricted) 3300024340\|Ga0255042_10180765	Not Available	647	Open in IMG/M
(restricted) 3300024529\|Ga0255044_10321125	Not Available	635	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10273962	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
(restricted) 3300028045\|Ga0233414_10487368	Not Available	579	Open in IMG/M
(restricted) 3300028581\|Ga0247840_10289999	Not Available	851	Open in IMG/M
3300002835\|B570J40625_101200200	Not Available	635	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	92.42%
Terrestrial	Environmental → Terrestrial	7.58%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	72.73%
Marine	Environmental → Aquatic → Marine	19.70%
Soil	Environmental → Terrestrial → Soil	7.58%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	7.58%
Coastal	Environmental → Aquatic → Marine → Coastal	3.03%
Inlet	Environmental → Aquatic → Marine → Inlet	1.52%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.79%
Lake	Environmental → Aquatic → Freshwater → Lake	34.09%
Lentic	Environmental → Aquatic → Freshwater → Lentic	31.06%
Oceanic	Environmental → Aquatic → Marine → Oceanic	5.30%
River	Environmental → Aquatic → Freshwater → River	2.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.52%
Strait	Environmental → Aquatic → Marine → Strait	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.79%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.52%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.27%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	14.39%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.52%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.52%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	27.27%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	19.70%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	7.58%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.79%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	3.79%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.03%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.27%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.52%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.76%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.52%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.79%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.76%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.52%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	15.91%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.79%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.27%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.27%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.52%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.76%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	24.24%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.27%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.52%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.76%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.76%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.76%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	3.79%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.76%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.55%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.52%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	14.39%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	7.58%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.76%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300007557	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715	Environmental	Open in IMG/M

Showing 1 to 10 of 104 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J40625_1012002002	3300002835	Freshwater	MMLVQATWQDTQTFRMIPVSTECPYVECIFDPATKVFVIISKIKRTSL
B570J40625_1015205981	3300002835	Freshwater	MMLVQATWQENQTFRMIPISESCPYVECIFDPGTKVFVIISKIKRTSLQMLPKLD
JGI25909J50240_11066371	3300003393	Freshwater Lake	MLLVQATWQESQTFRMIPITESCPYVECIFDPGTKVFVVILKTTK
JGI25907J50239_10114731	3300003394	Freshwater Lake	MMLVQATWQESQTFRMIPISEECPYVECIFDPSTKVFVIISKIKR
JGI25907J50239_10391883	3300003394	Freshwater Lake	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETKVFVVI
JGI25912J50252_100150704	3300003412	Freshwater Lake	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVVI
Ga0068872_105339532	3300005528	Freshwater Lake	MSEKSMMLVQSSWQESQTFRMIPITENCPYVECIFD
Ga0049080_101405211	3300005582	Freshwater Lentic	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETKVFV
Ga0078894_102438983	3300005662	Freshwater Lake	MQSMMLIQATWNDKQTFKMIPVTSTCPYVECIFDPNS
Ga0098038_10823591	3300006735	Marine	MSEKTMMLVESTWQETKTFKMIPVSSDCPYVECIFDPTSKVFVIISKVTKTSLHMLPKLD
Ga0098055_10756153	3300006793	Marine	MENSMMLVQSTWNGVQTFRMVPIHKDCPYVECICDPTSKVFVVISTITK
Ga0102821_10156714	3300007557	Estuarine	MSENTMMLVQATWQESQTFRMIPTSTDCPYVECIFDPTSNVFVVISNIKKTTL
Ga0105746_12386491	3300007973	Estuary Water	MSNKTMMLVQATWQEQQTFRMIPISENCPYVECIFDPGTKVFVIISKIKKTTLHMLPK
Ga0105748_104988382	3300007992	Estuary Water	MSKENQQTMMLVKSSWQESQTFRMIPTSESCPYVECIYDPST
Ga0114341_104889211	3300008108	Freshwater, Plankton	MIVQATWNETQTFRLIPIADECPYVECIFDPATKVFVIISKITKQSLHMLPKMDEN
Ga0102830_10408853	3300009059	Estuarine	MSENTMMLVQATWQESQTFRMIPISESCPYVECIFDPGTKVFVIISKIK
Ga0102815_105437971	3300009080	Estuarine	MSENTMMLVQATWQESQTFRMIPIAESCPYVECIFDPKTKVFVIISKIKRTSLQ
Ga0105097_100579914	3300009169	Freshwater Sediment	MNESMMLVQATWQEKQTFRMIPIAESCPYVECIFDP
Ga0114971_103171271	3300009185	Freshwater Lake	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPE
Ga0114925_109286082	3300009488	Deep Subsurface	MMLINSVWNEKPTFKMMPITNDCPYVECIYDPSSKVFVLIGK
Ga0115013_100720994	3300009550	Marine	MSEKTMMLVESTWQDTTTFKMIPISNDCPYVECIFDPSSK
Ga0098061_10218944	3300010151	Marine	MMLVNSSWQETQTFKLIPISNDCPYVECIFDPSSKVFVIISKVTKTSL
Ga0129333_114426291	3300010354	Freshwater To Marine Saline Gradient	MNNSMMLVQATWQEQQTFRMIPTSDQCPYVECIYDPGTKVFVIISKIKKTALH
(restricted) Ga0172362_105089911	3300013133	Sediment	MNESMMLVQATWQEQQTFRMIPTKDECPYVECIFDPGTKVFVIISKIK
Ga0177922_103280371	3300013372	Freshwater	MSEKSMMLVQSSWQESQTFRLIPISESCPYVECIYDPGTKVFVIISKTTKVTLHMLPK
Ga0181338_10337861	3300015050	Freshwater Lake	LNKFVLIKANKMNEKTMMLVQATWQEKQTFRMIPITESCPYVECIFDPETKVFVVISKI
Ga0181338_10382222	3300015050	Freshwater Lake	LYLIKKNQQMTESMMLVQATWQEKQTFRMIPINDTCPYVECIFDPGTK
Ga0181339_10131741	3300017700	Freshwater Lake	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETKVFVVISKITKQS
Ga0181350_10389741	3300017716	Freshwater Lake	MSEKSMLLVQATWQESQTFRMIPITESCPYVECIFDP
Ga0181350_10535111	3300017716	Freshwater Lake	MILVQSSWQESQTFRMIPITESCPYVECIYDPGTNVFVVILKTTKTTSLLRSE
Ga0181365_10726683	3300017736	Freshwater Lake	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMD
Ga0181421_10305593	3300017741	Seawater	MMLVQSTWNGVQTFRMVPIHKDCPYVECICDPTTKVFVV
Ga0181344_10455193	3300017754	Freshwater Lake	MMLVQATWQEQQTFRMIPISDECPYVECIFDPGTKVFVIISKIKKTTLHMLPK
Ga0181344_10890133	3300017754	Freshwater Lake	MSEKSMMLVQSSWQENQTFRLIPITDNCPYVECIF
Ga0181356_12107531	3300017761	Freshwater Lake	MTEKSMMLVQATWQDKQTFRLIPISDSCPYVECIFDPGTK
Ga0181343_10650413	3300017766	Freshwater Lake	MSEKSMMLVQSSWQENQTFRLIPITDNCPYVECIFDPGTKV
Ga0181358_11071103	3300017774	Freshwater Lake	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETKVFVVISKITKQSL
Ga0181349_11115383	3300017778	Freshwater Lake	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETKVFVVIS
Ga0181349_11668153	3300017778	Freshwater Lake	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMD
Ga0181349_11810881	3300017778	Freshwater Lake	MSEKSMLLVQATWQESQTFRMIPITESCPYVECIFDPGTK
Ga0181346_11261061	3300017780	Freshwater Lake	MSEKSMILVQSTWQESQTFRMIPISESCPYVECIFD
Ga0181348_10472123	3300017784	Freshwater Lake	MSEKSMMLVKSSWQESQTFRMIPISESCPYVECIFDPGT
Ga0169931_102353883	3300017788	Freshwater	MSENTMMLVEASWQDKTTFRMIPISEHSPYVECIFDPESKVFVVVSKIKKTSLHMLPK
Ga0181361_1100741	3300019783	Freshwater Lake	MSEPTMMLVQATWNDKQTFRMIPISESCPYVECIMDFP
Ga0181361_1173131	3300019783	Freshwater Lake	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETKVFVVISK
Ga0181361_1205242	3300019783	Freshwater Lake	MNKTMMLVQATWQESQTFRMIPTSSDCPYVECIFDPGTKVF
Ga0208600_10146251	3300020550	Freshwater	MSEKTMMLVQATWQESQTFRMVPIDATCPYVECIFDPGTKVFVI
Ga0208485_10262023	3300020573	Freshwater	MNESMMLVQATWQEQQTFRMIPIKDECPYVECIFDPGTKVFVIISKIKKTSF
Ga0208485_10408091	3300020573	Freshwater	LQNIFKNQQMSENTMMLIQATWNDKQTFRMIPIADSCPYVECIFDPDTKVF
Ga0222712_106248682	3300021963	Estuarine Water	MMLVQSSWQESQTFRMIPIAESCPYVECIFDPSTKVLVIISKTTKHSL
Ga0181351_11224121	3300022407	Freshwater Lake	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETK
Ga0181351_11832473	3300022407	Freshwater Lake	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVVISKITKQS
Ga0181351_11859801	3300022407	Freshwater Lake	MMLVKSSWQESQTFRMIPISESCPYVECIFDPGTKVFVIISK
(restricted) Ga0255040_100307984	3300024059	Seawater	MSEKTMMLVESTWQDTKTFKMIPISNDCPYVECIFDPS
(restricted) Ga0255039_100144854	3300024062	Seawater	MSEKTMMLVESTWQDTKTFKMIPISNDCPYVECIFDPSSKVFVIISKVT
Ga0210003_12288082	3300024262	Deep Subsurface	MMLVQATWQEQQTFRMVPIDNTCPYVECIFDPGTKVFVIISNIKKTSLHML
(restricted) Ga0255042_101053431	3300024340	Seawater	MSEKTMMLVESTWQDTKTFKMIPISNDCPYVECIFDPSSKVFVIISKV
(restricted) Ga0255042_101807651	3300024340	Seawater	MNKLMMLVKSSWQEDKTFKMVPISESCPYVECIYDPESK
(restricted) Ga0255044_103211251	3300024529	Seawater	MSEKTMMLVESTWQDTKTFKMIPISNDCPYVECIFDPSSKV
Ga0255283_11243192	3300024557	Freshwater	MKEKSMMLVKSSWQESQTFRMIPITESCPYVECIFDPGT
Ga0208767_11656961	3300025769	Aqueous	MMLVESSWQDSKTFKMIPISNDCPYVECLYDPMSK
Ga0255269_11024633	3300026573	Freshwater	MNESMMLVQATWQESQTFRMIPIAESCPYVECIFDP
Ga0255102_10353301	3300027144	Freshwater	MSEKSMLLVQATWQESQTFRMIPITESCPYVECIFDPGTKVFVVILKTTKTT
Ga0208673_10238413	3300027192	Estuarine	MSENTMMLVQATWQESQTFRMIPTSTDCPYVECIFDPTSNVFVVIS
Ga0208555_10094391	3300027213	Estuarine	MNESMMLLQASWQDQQTFRMIPITEDCPYVECIFDPGTKVFV
Ga0208975_10717021	3300027659	Freshwater Lentic	MMLLQASWQDQQTFRMIPVTENCPYVECIFDPSTKVFVVIS
Ga0209443_11159211	3300027707	Freshwater Lake	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVVISKI
Ga0209355_11272811	3300027744	Freshwater Lake	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVVIS
Ga0209597_10563771	3300027746	Freshwater Lake	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETK
Ga0209353_101225393	3300027798	Freshwater Lake	MILVQSTWQESQTFRMIPISESCPYVECIFDPGTKVFVVILKIT
Ga0209354_100406864	3300027808	Freshwater Lake	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVVISKITK
Ga0209503_101791371	3300027859	Marine	MKESTSKSMMLINSIWNEKETFKLIPISDNCPYAECIYDPDSSVFVIISKIKKTTLHMLP
Ga0209293_104402222	3300027877	Wetland	MKSKLKKLTMSENTMMLIQSTWNEKQTFRMIPISESCPYVECIMDPETKVFVIISK
Ga0209668_106832981	3300027899	Freshwater Lake Sediment	MMLVQSSWQESQTFRMIPIAESCPYVECIFDPSTKVLVIISKTTKHS
Ga0209253_102180313	3300027900	Freshwater Lake Sediment	MTEKSMMLVQATWQDKQTFRLIPISDSCPYVECIFD
(restricted) Ga0233413_102739622	3300027996	Seawater	MSEKTMMLVESTWQDGKTFKMMPISNDCPYVECIFDPTSKVFVVISK
(restricted) Ga0233414_104873682	3300028045	Seawater	MNKSMMLVQSSWQEDQTFKLIPIDESSPYVECIYDPQTKVFVVITKIKKFSLHM
Ga0304728_10554991	3300028393	Freshwater Lake	MSQNSMILVQSSWQESQTFRLVPITNECPYVECILDPA
(restricted) Ga0247840_102899993	3300028581	Freshwater	MSENTMMLVQATWQEKQTFRMIPIADSCPYVECIFDPET
Ga0183683_10307341	3300029309	Marine	MSDKTMMLVESTWQDTKTFKMIPVSNDCPYVECIYDPTSKVFVIISKVT
Ga0307380_102926183	3300031539	Soil	MSKENQQTMMLVKSSWQESQTFRMIPTSESCPYVECIFDPSTN
Ga0307380_105432221	3300031539	Soil	MSDKTMMLVQATWQEKQTFRLIPIAESCPYVEIIFDPETKVFVVISKIRKTSLHMLP
Ga0307378_103845241	3300031566	Soil	MSEKSMMLVKSSWQESQTFRMIPIAESCPYVECIFDPGTKVFVI
Ga0307378_107397611	3300031566	Soil	MSEKTMMLVKSSWQESQTFRMIPIAESCPYVECIFDPGT
Ga0307376_102836051	3300031578	Soil	MSNKTMMLVQATWQEQQTFRMIPISENCPYVECIFDPGTKVFVIISKIKKTTLHMLP
Ga0307375_103762351	3300031669	Soil	MSNKTMMLVQATWQEQQTFRMIPISENCPYVECIFDPGTKVFVIISKIKKTTL
Ga0307375_106321492	3300031669	Soil	MMLLQASWQDQQTFRMIPITENCPYVECIFDPSTKVFVVISNIKKTTL
Ga0307377_102929283	3300031673	Soil	MSEKTMMLVKSSWQESQTFRMIPIAESCPYVECIFDP
Ga0307377_104494431	3300031673	Soil	MNDKTMMLVKSSWQESQTFRMIPIAESCPYVECIFDPGTKVFVIIS
Ga0307377_111105411	3300031673	Soil	MILVQSSWQETQTFRMIPISESCPYVECIFDPATKVFVVIL
Ga0315291_115937682	3300031707	Sediment	MMLVQATWQESQTFRMIPITESCPYVECIFDPKTAVFVIISKIKRTSLQMLPKLDE
Ga0315293_103564321	3300031746	Sediment	MNEPTMMLVQATWNEKQTFRMIPITESCPYVECIMDPETQVFVIISKINKTSLHMLPKL
Ga0315293_103773291	3300031746	Sediment	MIEPTMMLVQATWNEKQTFRMIPLVVTCPYVECIMDP
Ga0315293_106062211	3300031746	Sediment	MILVQSTWQESQTFRMIPISESCPYVECIFDPGTKVFVVILKITKTAL
Ga0315288_105439231	3300031772	Sediment	MMLLQASWQDQQTFRMIPVTENCPYVECIFDPSTKVFVVISKIKKTTLHMLPKLD
Ga0315288_114403823	3300031772	Sediment	MTEKSMMLVQATWQDKQTFRLIPISDSCPYVECIFDPGTKVFVIISKIKRT
Ga0315899_114797141	3300031784	Freshwater	MNESMMLVQATWQEHQTFRMIPTSDECPYVECIYDPGTKVFVIISKIKKTA
Ga0315290_106297563	3300031834	Sediment	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVVISKITN
Ga0315909_100713321	3300031857	Freshwater	MSEKSMMLVQSSWQESQTFRLIPISESCPYVECIYDPGTKVFVIISKTTKVT
Ga0315909_109911391	3300031857	Freshwater	MSENTMMLVQSTWNDKQTFRMIPITESCPYVECIMDPDTKVFVVISKIRKVSLHM
Ga0315285_106607182	3300031885	Sediment	MTEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVMISKI
Ga0315294_104528994	3300031952	Sediment	MTEKSMMLVQATWQDKQTFRLIPISDSCPYVECIFDPGTKVFVIISKIKRTSLQMLPKLD
Ga0315294_111184082	3300031952	Sediment	MIEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVMISKI
Ga0315294_112464542	3300031952	Sediment	MSENTMMLVQATWQESQTFRMIPISESCPYVECIFDPK
Ga0315901_112348341	3300031963	Freshwater	MMLVQATWQESQTFRMIPIAESCPYVECIFDPKTKVFVIISKI
Ga0315274_106169403	3300031999	Sediment	MSQNSMILVQSTWQDSQTFRLIPVTLECPYVECILDPATKVFVVISKINKTSLHM
Ga0315274_111697891	3300031999	Sediment	MIEKTMMLVQSSWQEKQTFRMIPIADSCPYVECIMDPETKVFVMISKITKQSLHMLPKM
Ga0315284_103569444	3300032053	Sediment	MSDTTMMLVQATWNEQQTFRMIPIAESCPYVECIFDPSTKVFVIISKIVKTT
Ga0315284_122801081	3300032053	Sediment	MNEPTMMLVQATWNEKQTFRMIPITESCPYVECIMDPETQVFVIISKINKTSLHML
Ga0315284_123109792	3300032053	Sediment	MMLVQATWQEQQTFRLIPISDNCPYVECIFDPGTNVFVIISKITKTSLHMLPKI
Ga0315905_115629661	3300032092	Freshwater	MMLLQASWQDQQTFRMIPINDNCPYVECIFDPGTKVFVVISKIKKTTLH
Ga0315292_108394183	3300032143	Sediment	MTEKSMMLVQATWQDKQTFRLIPISDSCPYVECIFDPGTKVFVIISKIKRTSLQMLPKL
Ga0315273_109901161	3300032516	Sediment	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPET
Ga0334980_0396208_3_140	3300033816	Freshwater	MSEKTMILVQATWNDKQTFRMIPTSDTCPYVECIMDPDTKVFVIIS
Ga0334996_0180428_2_169	3300033994	Freshwater	MSEPTMMLVQATWNDKQTFRMIPIADSCPYVECIFDPDTKVFVIISKVSKQALHML
Ga0334979_0260099_883_999	3300033996	Freshwater	MSENTMMLVQSTWNDKQTFRMIPITESCPYVECIMDPDT
Ga0334986_0313880_1_156	3300034012	Freshwater	MSENTMMLIQATWNDKQTFRMIPIADSCPYVECIFDPDTKVFVIISKLTKQA
Ga0334985_0062575_3_143	3300034018	Freshwater	MMLVQSSWQESQTFRMIPITESCPYVECIFDPGTKVFVIISKTTKHT
Ga0334998_0728312_3_143	3300034019	Freshwater	MTKSKLIFMENKTMMLVQATWNEQQTFRMIPVSESCPYVECIFDPAT
Ga0334983_0691318_384_542	3300034060	Freshwater	MSENTMMLVQATWNEKQTFRLIPISESCPYVECIMDPDTKVFVVISKIRKTSL
Ga0334995_0000899_1_123	3300034062	Freshwater	MQNIFKNQQMSENTMMLIQATWNDKQTFRMIPIADSCPYVE
Ga0335000_0283897_882_1025	3300034063	Freshwater	MSENTMMLVQSTWNDKQTFRMIPITESCPYVECIMDPDTKVFVIISKI
Ga0335022_0493606_479_640	3300034095	Freshwater	MSENTMMLVQSTWNDKQTFRMIPITESCPYVECIMDPDTKVFVVISKIRKVSLH
Ga0335029_0390694_717_842	3300034102	Freshwater	MNDKSMMLVEATWQDKKTFRLIPVTESCPYVEIIFDPATKVF
Ga0335035_0439035_3_134	3300034105	Freshwater	MTEKTMMLVQSTWQEKQTFRMIPIADSCPYVECIMDPETKVFVV
Ga0335050_0392290_1_132	3300034108	Freshwater	MMLVQATWQENQTFRMIPISESCPYVECIFDPGTKVFVIISKIK
Ga0335051_0096765_1_135	3300034109	Freshwater	MSENTMMLVQSTWNDKQTFRMIPITESCPYVECIMDPDTKVFVVI
Ga0335055_0209085_730_861	3300034110	Freshwater	MKNSMMIVQATWNETQTFRLIPIATECPYVECIFDPATKVFVII
Ga0335033_0332583_1_138	3300034117	Freshwater	MSENTMMLVQATWNEKQTFRMIPISESCPYVECIMDPDTKVFVVIS
Ga0335065_0128495_1590_1703	3300034200	Freshwater	MSENTMMLVQSTWNDKQTFRMIPITESCPYVECIMDPD
Ga0335052_0021581_3857_4021	3300034279	Freshwater	MSENTMMLIQATWNDKQTFRMIPIADSCPYVECIFDPDTKVFVIISKLTKQALHM
Ga0335052_0223496_968_1072	3300034279	Freshwater	MMLIQATWNDKQTFRLIPIADSCPYVECIFDPDTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters