Basic Information | |
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Family ID | F060677 |
Family Type | Metagenome |
Number of Sequences | 132 |
Average Sequence Length | 43 residues |
Representative Sequence | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQM |
Number of Associated Samples | 91 |
Number of Associated Scaffolds | 132 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 95.45 % |
% of genes near scaffold ends (potentially truncated) | 96.21 % |
% of genes from short scaffolds (< 2000 bps) | 92.42 % |
Associated GOLD sequencing projects | 87 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.33 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (99.242 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.939 % of family members) |
Environment Ontology (ENVO) | Unclassified (62.121 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (44.697 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 26.39% β-sheet: 0.00% Coil/Unstructured: 73.61% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.33 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Vadose Zone Soil Tropical Forest Soil Soil Soil Forest Soil Soil Hardwood Forest Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Arabidopsis Rhizosphere Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
FACEORA_1571730 | 2032320005 | Soil | MRRRNELALLPKSPLLITESADEFDALRDAFEQEIKPRG |
KansclcFeb2_08828680 | 2124908045 | Soil | MRRNELTLLPKLPLLITESADEFDALRDAFEQEIKPRGIIE |
AF_2010_repII_A1DRAFT_100303063 | 3300000597 | Forest Soil | MPRTNELTLLPKLPLLITESADEFDALRDAFEQEIKPRGIIER |
JGI1027J12803_1047612172 | 3300000955 | Soil | LPKLPLLITESADEFDALRDAFEQEIKPRGIIEQM |
JGI1027J12803_1092568983 | 3300000955 | Soil | MPRTNELTLLPKLPLLITESADEFDALRDAFEQEINPXXXXGDVP* |
Ga0066395_101685212 | 3300004633 | Tropical Forest Soil | LLPKLPLLITESADEFDDLRDAFVREIKPQGIIERMYVDDFS* |
Ga0066388_1021134992 | 3300005332 | Tropical Forest Soil | MPRINELTLLPKLPLLITESADEFDALRDAFEREIKPRGIIE* |
Ga0066388_1062627251 | 3300005332 | Tropical Forest Soil | MPRTNELTLLPKLPLLITESADEFDALRDAFEQEIKPRGIIE |
Ga0070713_1003353512 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MRRNELTLLPKLPLLITEAADEFDALRDAFEQEIKPRGIIEHMYVHDISSIVWEI |
Ga0066703_103358432 | 3300005568 | Soil | MRRNELTLLPKLPLLITEAADEFDALRDAFEQEIKPRGIIEHMY |
Ga0066905_1008966752 | 3300005713 | Tropical Forest Soil | MPRTNELTLLPKLPLLITESADEFDALRDAFEREIKPRGII |
Ga0066905_1013083321 | 3300005713 | Tropical Forest Soil | MPRTNELTLLPKLPLLITESADEFDALRDAFEQEIKPR |
Ga0066903_1016907481 | 3300005764 | Tropical Forest Soil | MRRRNELTHLPKLPLLITESADEFDALRDAFEREIKPRGIIEQ |
Ga0066903_1046564001 | 3300005764 | Tropical Forest Soil | MRRRSELTLLPKLPLLTTESADEFDALRDAFEQEIKPRGI |
Ga0066903_1052167763 | 3300005764 | Tropical Forest Soil | MRPRNELALLPKSPLLITESADEFDALRDAFEREIKP |
Ga0066903_1070527241 | 3300005764 | Tropical Forest Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEREIKPRGIIEQMYVHD |
Ga0066903_1073133161 | 3300005764 | Tropical Forest Soil | MPRIKELALLPKLPLLISESADEFDALRNAFEREIKPRGIIEQMYVHDI |
Ga0075428_1021302982 | 3300006844 | Populus Rhizosphere | MRRRNELALLPKLPLLITESADEFDALREAFEQEIKPRGI |
Ga0126374_115018611 | 3300009792 | Tropical Forest Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHDIC |
Ga0126380_106081343 | 3300010043 | Tropical Forest Soil | MRRRNELALLPKSPLVITESADEFDALRDAFEQEI |
Ga0126380_115497962 | 3300010043 | Tropical Forest Soil | MRRRNELAVLPKLPLLITESAEEFDALREAFEREIKPRGIIEQMYV |
Ga0126384_100131447 | 3300010046 | Tropical Forest Soil | MRQKPLLLATLLPKLPLLITESADEFDDLRDAFVREIKPQGIIERMYVDDFS* |
Ga0126384_103019271 | 3300010046 | Tropical Forest Soil | MRRRNELTLLAKLPLLTESAEEFEALRDAFEQEIKPRGIIEQMYVH |
Ga0126384_116087171 | 3300010046 | Tropical Forest Soil | MRRTNKLTLLPKSPLLITETADEFDALRDAFEREIKPRGIIEQMYVHDIS |
Ga0126384_122890391 | 3300010046 | Tropical Forest Soil | MRRNELALLPKLPLLITESADEFDALRDAFEREIKP |
Ga0126373_113397671 | 3300010048 | Tropical Forest Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEQEIKPRGII |
Ga0126376_116400631 | 3300010359 | Tropical Forest Soil | MRRNELALLPKLPLLITESAEEFDALRDAFERKIKPRDIIEQMY |
Ga0126381_1040172101 | 3300010376 | Tropical Forest Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKPR |
Ga0126383_107734731 | 3300010398 | Tropical Forest Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEREMKPRGI |
Ga0126383_124507721 | 3300010398 | Tropical Forest Soil | MEQENMRGTNELTLLPTLPLLITESADEFSALRDAFE |
Ga0126383_133414441 | 3300010398 | Tropical Forest Soil | MRRRNELAVLPKLPLLITESAEEFDALRDAFEREIKPRG |
Ga0138513_1000566902 | 3300011000 | Soil | MRRRDKLTLLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMY |
Ga0137391_105813272 | 3300011270 | Vadose Zone Soil | MGRRNELALLPKLPLLITESVDEFDAIRDAFEREIKPHGIIEQMYVHDV |
Ga0137362_101611643 | 3300012205 | Vadose Zone Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKPRG |
Ga0137379_103104282 | 3300012209 | Vadose Zone Soil | MRPRNELALLPKVPVLITESADEFDALRDAFEREIKPRGIIDHMYVDEAAGQGCLD* |
Ga0137378_116510811 | 3300012210 | Vadose Zone Soil | LLPKVPVLITESADEFDALRDAFEREIKPRGIIDHMYVDEAAGQGCLD* |
Ga0137370_109165771 | 3300012285 | Vadose Zone Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEQEIRPRGIIEQMYVQ |
Ga0137366_110868982 | 3300012354 | Vadose Zone Soil | MRPRNELALLPKVPVLITESADEFDALRDAFEREIKPRGI |
Ga0137375_110978762 | 3300012360 | Vadose Zone Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFKQEIKPRGIIEQMYVHDISS |
Ga0137395_109189992 | 3300012917 | Vadose Zone Soil | MRRNELTLLPKLPLLITEAADEFDALRDAFEQEIKPRGIIEHMYVHDISSIV |
Ga0137359_105407592 | 3300012923 | Vadose Zone Soil | MGRRNELALLPKLPLLITESVDEFDAIRDAFEREIKPHGIIEQMYVHD |
Ga0137407_121634991 | 3300012930 | Vadose Zone Soil | MARRNSDERMLLPKPPLLITESASEFEALREALEREIKPRGIIEQT |
Ga0126375_117480671 | 3300012948 | Tropical Forest Soil | MRRRNELAVLPKLPLLITESADEFDALRDAFEQEIKP |
Ga0126369_130574632 | 3300012971 | Tropical Forest Soil | MRRRNELALLPKSPLLITESADEFDALRDAFEQEIKPRGIIEHM |
Ga0132258_122819671 | 3300015371 | Arabidopsis Rhizosphere | MRRRNELALLPKLPLLITESADEFGALRDAFEREIKPRGIIEQMYVHDICSIV |
Ga0182036_110908681 | 3300016270 | Soil | MRRTNKLTLLPKSPLLITETADEFEALRDAFEREIKPRGIIEQMYVH |
Ga0182036_111861941 | 3300016270 | Soil | MGRRNELALLPKLPLLITESAEEFDALRDAFEQEIKPRGII |
Ga0182036_117305181 | 3300016270 | Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEREIKP |
Ga0182041_112226741 | 3300016294 | Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEREIKPRGIIEQ |
Ga0182033_120316901 | 3300016319 | Soil | MRRRNELALLPKLPLLITESAGEFDALRDAFEQEIKPRGIIEQMYV |
Ga0182032_109880331 | 3300016357 | Soil | MGRTNELTLLPKSPLLITESAEEFDALRDAFEREIKPQGIIEQMYVH |
Ga0182037_101715241 | 3300016404 | Soil | LTLLPKLPLLITESADEFDALRDAFEREIKPRGIIEQ |
Ga0182037_108218352 | 3300016404 | Soil | MRRRNELAVLPKLPLLITESAEEFDALREAFEREIKP |
Ga0182038_102826723 | 3300016445 | Soil | MGRTNELTLLPKSPLLITESAEEFDALRDAFEREIKPQGIIE |
Ga0184635_102968541 | 3300018072 | Groundwater Sediment | MRPKNELALLPKLPLLITESADEFGALCDAFEREIKPRGI |
Ga0126371_109410341 | 3300021560 | Tropical Forest Soil | MPRTNELTLLPKLPLLITESANEFDALRDAFEQEIKPRGIIE |
Ga0207653_100518101 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | MRRNELALLPKLPLLITESADEFDALRDAFKQEIKQRGIIE |
Ga0179587_111032852 | 3300026557 | Vadose Zone Soil | MGRRNELALLPKLPLLITESVDEFDAIRDAFEREIKPHGIIEQMYVHDLS |
Ga0318534_102883312 | 3300031544 | Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEQEIKPRGIIE |
Ga0318534_107689481 | 3300031544 | Soil | MRRRNELALLPKSPLLITESAHEFDALRDAFEQEIKPRGIIEQ |
Ga0318541_102367141 | 3300031545 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIK |
Ga0318541_102797032 | 3300031545 | Soil | MRRNELTLLPKLPLLITEAADEFDVLKQVLRQPGQ |
Ga0318538_102933871 | 3300031546 | Soil | MTRINELTLLPKLPLLITESADEFDALRDAFEEEIKPRGIIEQ |
Ga0318538_105082102 | 3300031546 | Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEQEIKPRGIIEQM |
Ga0318538_106487702 | 3300031546 | Soil | MRRTNKLTLLPKSPLLITETADEFEALRDAFEREIKPRGIIEQMYVHDISSVVWE |
Ga0318538_107008192 | 3300031546 | Soil | MRLRNELALLPKSPLLITETADEFDALRDAFEGEIKPQGIIEQMYVHD |
Ga0318571_100329141 | 3300031549 | Soil | MRRNELTLLPKLPLLITEAADEFDALRDAFEQEIKPRGIIEHMYVHDI |
Ga0318528_105802382 | 3300031561 | Soil | MNRTNELTLLPKLPLLITESPDEFDAVWDAFEREIKPRGI |
Ga0318573_104639941 | 3300031564 | Soil | MRRNELAVLPKLPLLITESPDEFDALRDAFEREIKPRGIIEQMYVHDIC |
Ga0318573_105597041 | 3300031564 | Soil | MGRTNELTLLPKSPLLITESAEEFDALRDAFEREIKPQGIIEQM |
Ga0318555_106296001 | 3300031640 | Soil | MHRLLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHDFC |
Ga0318561_106864813 | 3300031679 | Soil | MRRTNKLTLLPKSPLLITETADEFEALRDAFEREIKPRGIIEQMY |
Ga0318561_107366751 | 3300031679 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEREIKPRGI |
Ga0318574_100434051 | 3300031680 | Soil | MPRTNELTLLPKLPLLTTESADEFDALCDAFEQEIK |
Ga0318496_104373632 | 3300031713 | Soil | MRRRNELAVLPKLPLLITESAEEFDALREAFEREIKPRGIIEQMYLHDICS |
Ga0318500_104926072 | 3300031724 | Soil | MRRRNELALLPKLPLLITESAEEFDALRDAFEREIKPRGIIE |
Ga0306918_100213315 | 3300031744 | Soil | MRRRNELAVLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHDFCS |
Ga0318502_103936691 | 3300031747 | Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEREIKPRGI |
Ga0318502_108285012 | 3300031747 | Soil | MNRTNELTLLPKLPLLITESPDEFDAVWDAFEREIKPRGIIE |
Ga0318537_100325451 | 3300031763 | Soil | MNRTNELTLLPKLPLLITESPDEFDAVWDAFEREIKPRGIIEQMYVHDI |
Ga0318543_101015131 | 3300031777 | Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEREIKPRGIIEQM |
Ga0318566_106411012 | 3300031779 | Soil | MGRRNELALLPKLPLLITESAEEFDALRDAFEQEIKPRGIIEQMYVHD |
Ga0318503_102389942 | 3300031794 | Soil | MRRNELAVLPKLPLLITESPDEFDALRDAFEREIKPRGII |
Ga0318497_104196361 | 3300031805 | Soil | MRRRNELAVLLKLPLLTSESADEFDALRDAFEREIKPRGIIE |
Ga0318568_105184771 | 3300031819 | Soil | MRRRNELALLPKLPLLITESAGEFDALRDAFEQEIKPRGIIEQM |
Ga0318568_108814491 | 3300031819 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYV |
Ga0310917_106463091 | 3300031833 | Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEREIKPR |
Ga0318511_102022312 | 3300031845 | Soil | MRRRNELAVLPKLPLLITESAEEFDALREAFEREIKPRGIIEQMYVHDI |
Ga0318511_104528052 | 3300031845 | Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEREIKPRGIIEQMYVHDI |
Ga0318512_101439222 | 3300031846 | Soil | MGRTNELTLLPKSPLLITESAEEFDALRDAFEREIKPQGIIEQMYVHDICSI |
Ga0318512_107333521 | 3300031846 | Soil | MRRRNELALLPKLPLLITESAEEFDALRDAFEREIKPRGIIEQM |
Ga0306919_101764281 | 3300031879 | Soil | MPRINELTLLPKLPLLITESADEFDALRDAFEEEIKPRGIIEQ |
Ga0306925_121517041 | 3300031890 | Soil | MRRRNELALLPKSPLLITESADEFDALRDAFEQEIEPRGIIEQMY |
Ga0318522_102092071 | 3300031894 | Soil | MRRNELALLPKLPLLITESAEEFAALRDAFEREIKP |
Ga0318520_100064021 | 3300031897 | Soil | MRRRNELAVLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHDFCSIV |
Ga0306923_100956561 | 3300031910 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHDF |
Ga0306923_119019132 | 3300031910 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHEICCIV |
Ga0306921_100237048 | 3300031912 | Soil | LTLLPKLPLLITESADEFDALRDAFEREIKPRGIIEQM |
Ga0306921_101439684 | 3300031912 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHDFCSIV |
Ga0306921_113190582 | 3300031912 | Soil | MRRNESALLPKLPLLITESAEEFDALRDAFEREIKP |
Ga0306921_126190011 | 3300031912 | Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEREIKPRGIIEQ |
Ga0310912_105944351 | 3300031941 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKP |
Ga0310912_106070221 | 3300031941 | Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEQEIKPRVIIEQ |
Ga0310916_101810621 | 3300031942 | Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHDMSAI |
Ga0310916_104186701 | 3300031942 | Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEQEIKPRGIIEQMYVH |
Ga0310916_115133791 | 3300031942 | Soil | MPQTNELTLLPKLPLLITESPDEFDALRDAFEQEIKPRGIIEQMYVH |
Ga0310913_100524994 | 3300031945 | Soil | MNRTNELTLLPKLPLLITESPDEFDAVWDAFEREIKPRGIIEQMYVH |
Ga0310913_111215581 | 3300031945 | Soil | MGRRNELALLPKLPLLITESAEEFDALRDAFEQEIKPRGIIE |
Ga0310913_112265671 | 3300031945 | Soil | MRKNELALLPKLPLLITESADEFEALRDAFEREIKPQGIIEQMY |
Ga0310910_111680961 | 3300031946 | Soil | MPRKNELTVLPKLPLLITESAEEFDALRDAFEREIKPRGVIEQ |
Ga0310909_113371531 | 3300031947 | Soil | MRRNELALLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMY |
Ga0306926_106543212 | 3300031954 | Soil | MRRRNELGVLPKLPLLITESAEEFDALREAFEREIKPRGIIEQMYVH |
Ga0306926_117687062 | 3300031954 | Soil | MRRRNELATLPKLPLLITESAEEFDALRDAFEREIKPRG |
Ga0318530_100412863 | 3300031959 | Soil | LTLLPKLPLLITESADEFDALRDAFEREIKPRGIIE |
Ga0318531_104239142 | 3300031981 | Soil | MRRRNELAVLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMYVHDFC |
Ga0318569_101027231 | 3300032010 | Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFEREIKPRGIIEQMY |
Ga0310911_107577521 | 3300032035 | Soil | MRRTNKLTLLPKSPLLITETADEFEALRDAFEREIKPRGIIEQMYVHDICSIVWEIL |
Ga0310911_107990231 | 3300032035 | Soil | MRRRNELTLLPKLPLLITESADEFDALRDAFKQEIK |
Ga0318559_104639002 | 3300032039 | Soil | MRRRNELAVLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQMY |
Ga0318545_101472142 | 3300032042 | Soil | MRRRNELAVLPKLPLLITESAEEFDALREAFEREIKPRGIIEQMYLHDI |
Ga0318575_103542622 | 3300032055 | Soil | MRRNELALLPKLPLLITESAEEFDALRDAFEREIKPRGII |
Ga0318504_101741452 | 3300032063 | Soil | MRRRNELAVLPKLPLLITESAEEFDALREAFEREIKPRGIIEQMY |
Ga0318513_103542381 | 3300032065 | Soil | MRRRNELALLPKLPLLITESAEEFDALRDAFEREIKPR |
Ga0306924_103025941 | 3300032076 | Soil | MSRRNELTLLPKLPLLITESADEFDALRAAFQQEIKPRGIIEQMYV |
Ga0318518_100475463 | 3300032090 | Soil | MRRRNELAVLPKLPLLITESADEFDALRDAFEQEIKPR |
Ga0318577_102719391 | 3300032091 | Soil | MRRNELAVLPKLPLLITESPDEFDALRDAFEREIKPRGIIEQMYVH |
Ga0307471_1008165921 | 3300032180 | Hardwood Forest Soil | MPRINELTLLPKVPLLITESADEFDALRDAFEQEIKPRGIIEQMYVH |
Ga0306920_1001085591 | 3300032261 | Soil | MRRRNELALLPKLPLLITESAEEFDALRDAFEREIKPRGIIEQMYVHDI |
Ga0306920_1016306842 | 3300032261 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEIKPRGIIEQM |
Ga0306920_1017653001 | 3300032261 | Soil | MRKNELALLPKLPLLITESADEFEALRDAFEREIK |
Ga0310914_102522313 | 3300033289 | Soil | MRRRNELAVLPKLPLLITESAEEFDALREAFEREIK |
Ga0310914_104858383 | 3300033289 | Soil | MRRRNELALLPKLPLLITESADEFDALRDAFEQEI |
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