NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F060668

Metagenome Family F060668

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F060668
Family Type Metagenome
Number of Sequences 132
Average Sequence Length 99 residues
Representative Sequence MIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP
Number of Associated Samples 97
Number of Associated Scaffolds 132

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 74.24 %
% of genes near scaffold ends (potentially truncated) 27.27 %
% of genes from short scaffolds (< 2000 bps) 85.61 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (80.303 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(10.606 % of family members)
Environment Ontology (ENVO) Unclassified
(45.455 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.273 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.
1INPhiseqgaiiFebDRAFT_1008621571
2INPhiseqgaiiFebDRAFT_1008622062
3INPhiseqgaiiFebDRAFT_1008624552
4JGI10216J12902_1004985832
5JGI10216J12902_1008099173
6JGI10216J12902_1009865192
7JGI10216J12902_1009986711
8JGI10216J12902_1043558312
9JGI10216J12902_1049453362
10JGI10216J12902_1050987442
11JGI10216J12902_1211924772
12A10PFW1_102289092
13Ga0063454_1014698351
14Ga0062593_1001086452
15Ga0062593_1006408582
16Ga0062593_1018782452
17Ga0062589_1001363332
18Ga0063356_1023331272
19Ga0062591_1016429932
20Ga0062594_1007133442
21Ga0062594_1009800882
22Ga0062594_1012389082
23Ga0062594_1019769342
24Ga0066676_107713442
25Ga0070683_1000621873
26Ga0070683_1008614932
27Ga0066388_1024040751
28Ga0066388_1041554741
29Ga0070680_1000029015
30Ga0070661_1018878071
31Ga0070671_1006963231
32Ga0070674_1014328711
33Ga0070708_1015456142
34Ga0070678_1000541261
35Ga0070678_1023035062
36Ga0070662_1013592811
37Ga0068867_1021022012
38Ga0070741_100019816
39Ga0070741_1003462310
40Ga0070741_100358123
41Ga0070741_100885012
42Ga0070684_1001557172
43Ga0070664_1005701041
44Ga0068856_1006922212
45Ga0068864_1020328872
46Ga0066903_1002277503
47Ga0066903_1005194571
48Ga0066903_1007539583
49Ga0066903_1051290302
50Ga0066903_1060277101
51Ga0081455_101197852
52Ga0066656_109633612
53Ga0075425_1000985143
54Ga0075434_1002701782
55Ga0068865_1011486892
56Ga0075435_1017044972
57Ga0066710_1028975682
58Ga0099827_106267821
59Ga0105245_102097272
60Ga0105245_107307502
61Ga0105245_117654511
62Ga0105243_102835022
63Ga0075423_104976182
64Ga0075423_120975002
65Ga0105242_100847833
66Ga0105248_129955401
67Ga0105237_107324062
68Ga0105237_109398011
69Ga0105249_132949712
70Ga0126382_118917102
71Ga0126370_112215162
72Ga0126370_117450172
73Ga0126377_120531611
74Ga0138514_1000619322
75Ga0137388_115275442
76Ga0137372_100539183
77Ga0137372_101335743
78Ga0137369_102491562
79Ga0137375_105859572
80Ga0157298_102061141
81Ga0164298_108059221
82Ga0164301_110345342
83Ga0164309_104456351
84Ga0164308_101169102
85Ga0164307_105226342
86Ga0164305_105490611
87Ga0164305_118778501
88Ga0157378_112581161
89Ga0157378_128772501
90Ga0163162_129534272
91Ga0157372_122626731
92Ga0157372_131139142
93Ga0157375_105875282
94Ga0120154_11475532
95Ga0120155_11595882
96Ga0163163_105290021
97Ga0157377_110289332
98Ga0157379_116911032
99Ga0157376_125044351
100Ga0132258_100281618
101Ga0132257_1039122492
102Ga0132255_1026679572
103Ga0163161_112664102
104Ga0187788_104644592
105Ga0184624_104117352
106Ga0066655_110323652
107Ga0173481_105718822
108Ga0247678_10315502
109Ga0207653_104333032
110Ga0207647_103963162
111Ga0207707_100034937
112Ga0207660_100102422
113Ga0207687_106385832
114Ga0207706_105584952
115Ga0207709_106578872
116Ga0207669_110783771
117Ga0207711_119439151
118Ga0207689_112752571
119Ga0207702_101949992
120Ga0207702_113038052
121Ga0207702_122525391
122Ga0207675_1004837781
123Ga0207683_100122476
124Ga0207698_110422522
125Ga0209474_106981961
126Ga0265318_101034822
127Ga0307299_103731632
128Ga0307305_103683002
129Ga0307312_108679741
130Ga0247826_111313521
131Ga0307468_1003754502
132Ga0310897_105903141
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.98%    β-sheet: 32.28%    Coil/Unstructured: 41.73%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090MIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAPSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.76
Powered by PDBe Molstar

Structural matches with SCOPe domains



 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
81.1%18.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Soil
Permafrost
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Soil
Arabidopsis Rhizosphere
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
9.1%4.5%3.0%3.0%6.8%10.6%5.3%4.5%4.5%3.8%5.3%3.8%3.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10086215713300000364SoilIVAGLSIWGAVTGFYGTKQWEPVKTCQATYRGDRFAMVEAKIHGRRHIAALHLLNAKRGWVVMWADGKVNRKIGPSTAPLVRAEVTRLKAQCLAP*
INPhiseqgaiiFebDRAFT_10086220623300000364SoilMIAAIVAGLSIWGSITGFYGTKHWQPLKVCQTTYRGDRFAMVQARIAGRRHIAALHLLNAKRGWVVMWADGKVNRKIGPSTAPLVLAEVTRLKAKCLAP*
INPhiseqgaiiFebDRAFT_10086245523300000364SoilMTLIALAVTIWGAVTGFYGTRHWSPIDVCKATYRGDRFALVQARIGGRRHIAALHLYSAKRGWVVMWADGRVNPKIDPFTRPLVTSEVTRLKAKCLAP*
JGI10216J12902_10049858323300000956SoilMTALALVATIWAAVTGFYGTRHWKPIDVCKATYLSDRFALVQARIHGTRHVAALHYYSAKRGWVVMWADGRVNPKIGPSTSPLVLAEVTRLKAKCLAP*
JGI10216J12902_10080991733300000956SoilMSIPLVMASAVSAFVVSVAPTPATLWGAVTGFFGTRAWQPVDVCQARYMGDRFAFVQLRLHGRRHLAALHLYSARRGWVVMWADGHVNRRIGQSTRPLVLAEVTRLKAQCLAP*
JGI10216J12902_10098651923300000956SoilVIVAALVATIWAAVTGFYGTRHWTPIDVCKATYMGDHFALVQARIHGRRHIAALHFYSAKRGWVVMWADGQVNPKIGISIRPLVLAEVTRLKAKCLAP*
JGI10216J12902_10099867113300000956SoilVTLLVAAATIWGAVTGFYGTRHWQPLDVCEARYLGDRFALVQAKIAGRRHIAALHLYNARTGWVVMWSDGHVNHKIGSSTRPLVLGEVTRLKAKCLAP*
JGI10216J12902_10435583123300000956SoilMIVAVVLAATIWGAVTGFYGTRHWQPVDVCKASYLGDRFAIVKATIRGTPHVAALHYLDRRRGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
JGI10216J12902_10494533623300000956SoilMIVAALVATIWAAVTGFYGTRHWTPIDVCKASYLQDRFALVQANIHGRRHIAALHYYSAKRGWVVMWADGHVNPKVPGSIHPLVLAEVTRLKAKCLAP*
JGI10216J12902_10509874423300000956SoilMIVAALVATIWAAVTGFYGTRHWTPIDVCRGSYLQDRFALVQANIHGRRHIAALHYYNAKRGWVVMWADGRVNPKVPGSIRPLVLAEVTRLKAKCLAP*
JGI10216J12902_12119247723300000956SoilMIALAAAATIWGAVSGFYGTRHWQVLDVCQARYMGDRFALVQAKIAGRRRIAALHLYDARTGWVVMWADGRVNRRIGPSIRPLVLAEVTRLKAKCLAP*
A10PFW1_1022890923300001538PermafrostVRLLASAALILAGATPQTIWKAVTGFYGTRAVTIADICQARYRSDRFALVQVRIAGRRHIAALHLLNAKTGWVVMWSDGKVNRKIGPSTRRLVVAEVTRLKAQCLAP*
Ga0063454_10146983513300004081SoilLSIWGAISGFYGTKHWQPMKVCQSTYMGDRFAMVQLAIRGRRHIAALHLFSAKRGWVVMWSDGKVSRKIGPSAAPLVLAEVTRLKARCLAP*
Ga0062593_10010864523300004114SoilMIVAVALAVTIWGAMTGFYGTRQWRPVDVCKATFMGDQFAMVKATINGKPHVAALHYLDRRTGWVVMWADGTVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0062593_10064085823300004114SoilMIVVVALAATIWGAVTGFYGTRHWRPVDVCKATYMRDHFAMVKATIGGRPHVAALHYFDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0062593_10187824523300004114SoilMMVVAALVATIWGAVTGFYGTRHWTPVKVCHATYMGDQFAMVKATIRGRTHVAALHHYSPKVGWIVMWADGKVNRTIGPSTRALVLAEVTRLKAQCLAP*
Ga0062589_10013633323300004156SoilMTIAVAATIWGAVTGFYGTRHWQPLDVCHARYRGDRFALVQARIRGRKHLAALHLYSAQTGWVVMWADGQLNRKIGPSTRPLVLAELTRLKAKCLAP*
Ga0063356_10233312723300004463Arabidopsis Thaliana RhizosphereMIVVVAVAATIWGAVTGFYGTRHWRPVDVCKATYMRDHFAMVKATIGGRPHVAALHYFDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0062591_10164299323300004643SoilVIATIVAGLSIWGAVTGFYGTKQWEPVKTCQATYRGDRFAMVEAKIHGRRHIAALHLLNAERGWAVMWADGRVNRKVGPSTAPLVRAEVTRLKAQCLAP
Ga0062594_10071334423300005093SoilVIAAVAVSVSIWGAITGFYGTKHWQPQKVCKAAYMGDQFAIVKLSLRGRPHIAALHLFSAKRGWVVMWADGRVNRRINPRTAALVEAEVTRLKAKCLAP*
Ga0062594_10098008823300005093SoilVTLLALAATIWAAVTGFYGTRNWAPIDVCKATYMGEDFALVQAKIRGARHIAALHFLNPKRGWVVMWADGRVNPRISPYTRSLVQAEVTRLKAKCL
Ga0062594_10123890823300005093SoilVIAAAAAALSIWGAITGFYGTKQWQPLKVCKAEYRGDRFAMVQATVKGRRRVAALHLFGAKRGWVVMWADGKVNPKIGPSTAPLVLAEVTRLKAKCLAP*
Ga0062594_10197693423300005093SoilTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0066676_1077134423300005186SoilMIVAALVATIWAAVTGFYGTRHWTAIDVCKASYLNDQFALVQARIHGRRHIAALHYYSAKRGWVVMWADGHVNPKIGISVRPLVLAEVTRLKAKCLAP*
Ga0070683_10006218733300005329Corn RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0070683_10086149323300005329Corn RhizosphereMIVAVVLAATIWGAVTGFYGTRHWQPVDVCKATYLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0066388_10240407513300005332Tropical Forest SoilVTVLALVATIWAAVTGFYGTRNWTPIDVCKATYMGDNFALVQAKIHGVRHVAALHFLNAKRGWVVMWADGRVNPKIGPYTSSLVQAEVTRLKAKCLAP*
Ga0066388_10415547413300005332Tropical Forest SoilVTVLAMVATIWAAVTGFYGTRNWTPIDVCKATYMGEDFALVQARIRGKRHIAALHFLNKKRGWVVMWSDGQVNPKISPYTRSLVRAEVTRLKAKCLAP*
Ga0070680_10000290153300005336Corn RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIRGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0070661_10188780713300005344Corn RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRSHVAALHYFDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0070671_10069632313300005355Switchgrass RhizosphereMIVAVALAATIWGAVTGFYGTRQWQPVDVCKATYMGDQFAMVKATVSGKPHVAALHYLDRRTGWVVMWADGTVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0070674_10143287113300005356Miscanthus RhizosphereATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0070708_10154561423300005445Corn, Switchgrass And Miscanthus RhizosphereVTLIALAATIWAAVTGFYGTRNWAPIDVCKATYMGEDFALVQAKIRGARHIVALHFLNPKRGWVVMWADGRVNPRISPYTRSLVQAEVTRLKAKCLAP*
Ga0070678_10005412613300005456Miscanthus RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKC
Ga0070678_10230350623300005456Miscanthus RhizosphereAVAAALSIWGAITGFYGTKQWQPLKVCKAEYRGDRFAMVQATVKGRRRVAALHLFGAKRGWVVMWADGKVNPKIGPSTAPLVLAEVTRLKAKCLAP*
Ga0070662_10135928113300005457Corn RhizosphereMIVVVALAATIWGAVTGFYGTRHWRPVDVCKATYMGDHFAMVKATIGGRSHVAALHYFDRKTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0068867_10210220123300005459Miscanthus RhizosphereMIAAVAAALSIWGAITGFYGTKQWQPLKVCKAEYRGDRFAMVQATVKGRRRVAALHLFGAKRGWVVMWADGKVNPKIGPSTAPLVLAEVTRLKAKCLAP*
Ga0070741_1000198163300005529Surface SoilMTAAAAFAVLLALAPQTIWKSVTGFYGTRAVVFDRICQSRYMGDRFAFARLRIHGGRHDAALHHLDARRGWVVMWADGKVNRKIGASTRPLVLAEVTRLKTRCLAP*
Ga0070741_10034623103300005529Surface SoilVIVAALVATIWAAVTGFYGTRQWRPVDVCRARYMGDDFALVQARIHGVRHIAGLHLYSARRGWVVMWADGRVNPKIGPSTRPLVLAEMTRLKAKCLAP*
Ga0070741_1003581233300005529Surface SoilVLTIWGAISGFYGTRDWGPTDVCQARYMGDRFAFVQLRLHGRRHLAALHLYSARRGWVVMWADGHVNRKIGPATRPLVLAEVTRLKAKCLAP*
Ga0070741_1008850123300005529Surface SoilVTALATALTIWGAITGFYGTRAWAPTDVCQARYMGDRFAFVQLRLHGRRHLAALHLYSARRGWVVMWADGNVNRKIGAATRPLVLAEVTRLKAQCLAP*
Ga0070684_10015571723300005535Corn RhizosphereVTLLALAATIWAAVTGFYGTRNWTPTDVCKATYMGEDFALVQAKIRGARHIVALHFLNPKRGWVVMWADGRVNPRISPYTRSLVQAEVTRLKAKCLAP*
Ga0070664_10057010413300005564Corn RhizosphereVADPRAERRASLAGADRAARMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0068856_10069222123300005614Corn RhizosphereMIVAVALAVTIWGAMTGFYGTRQWRPVDVCKATFMGDQFAMVKATINGKPHVAALHYLDRRTGWVVMWADGTVTRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0068864_10203288723300005618Switchgrass RhizosphereMIVAVVLAATLWGAVTGFYGTRHWQPVDVCKATYLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0066903_10022775033300005764Tropical Forest SoilLTIRGAVTGFYGTKSWQPVKVCKASYLGDRFALVDARIAGRRHIAALHLLSAKRGWVVMWADGRVNQKINPRTAALVDAEVTRLKAKCLAP*
Ga0066903_10051945713300005764Tropical Forest SoilMIAAVALAVTIWGAVTGFYGTRQWRPVDVCKATYMGDRFAMVKATVRGTPHVVALHYLDRRTGWVVMWADGRVNRRIGPFTRPLVLAEVTRLKAKCLAP*
Ga0066903_10075395833300005764Tropical Forest SoilVIALVATATIWGAITGFYGTRHWRPIDVCQARYLGDRFAFVQARIAGRRHLAALHFFNARTGWVVMWADNHVNRKIGPSTRPLVLAEVTRLKAKCLAP*
Ga0066903_10512903023300005764Tropical Forest SoilVTATVAVALSIWGAVTGFYGTRHWQPVHVCQSRYMGDRFALVQARIHGREHIAALHLLAGRRGWVVMWADGKANPRIGPATRPLVLAEVTRLKAQCLAP*
Ga0066903_10602771013300005764Tropical Forest SoilVTTVAVAATIWAAVTGFFGTRAWHPVDVCRAGYMGDRFAFVQLRIHGRRHLAALHLYSAKRGWVVMWADGRVNWKIGPPTRPLVMAEVTRLEAQCLAP
Ga0081455_1011978523300005937Tabebuia Heterophylla RhizosphereVIAAVVAGLSIWGAVTGFYGTKSWRPVKVCQASYLGDRFALVDARIAGRRHIAALHRLSAKRGWVVMWADGKVNRRINPRTAALVDAEVTRLKAKCLAP*
Ga0066656_1096336123300006034SoilVILLATVATIWRAVTGFYGTRHCEPIHICQSRYLGDRFALVQARIAGRRHIAALHLYNARTGWVVMWADGRVNRKIGPRIRPLVLAEVTRLKATCLAP*
Ga0075425_10009851433300006854Populus RhizosphereMIVAALVATIWAAVTGFYGTRHWTPIDVCKGSYLQDRFALVQAQIHGRRHIAALHYYSAKRGWVVMWADGRVNPRVPGSIRPLVIAEVTRLKAKCLAP*
Ga0075434_10027017823300006871Populus RhizosphereMIVAALVATIWAAVTGFYGTRHWTPIDVCKGSYLQDRFALVQAQIHGRRHIAALHYYSAKRGWVVMWADGRVNPRVPGSIRPLVLAEVTRLKAKCLAP*
Ga0068865_10114868923300006881Miscanthus RhizosphereMIAAVAAALSIWGAITGFYGTKQWQPLKVCKAEYRGDRFAMVQATVKGRRRVAALHLFGSKRGWVVMWADGKVNPKIGPSTAPLVLAEVTRLKAKCLAP*
Ga0075435_10170449723300007076Populus RhizosphereMIVAALVATIWAAVTGFYGTRHWTPIDVCKGSYLQDRFALVQAQIHGRRHIVALHYSAKRGWVVMWADGRVNPRVPGSIRPLVLAEVTRLKAKC
Ga0066710_10289756823300009012Grasslands SoilVILLATVATIWGAVTGFYGTRHWAPIHICQSRYLGDRFALVQARIAGRRHIAALHLYNARRGWMVMWADGQINSKVGPSTRPLVLAEVTRLKAKCLAP
Ga0099827_1062678213300009090Vadose Zone SoilVRLLATLSLALVGATPATIWRAVTGFYGTKRWTAIDICQATYVSDRFALVQAKIAGRRHIVALHLFSARRGWVVMWADGRVNRRIGPATRPLVLAEVTRLKAKCLAP*
Ga0105245_1020972723300009098Miscanthus RhizosphereMIVAVALAVTIWGAMTGFYGTRQWRPVDVCKATCMGDQFGMVKATINGKPHVAALHYLDRRTGWVVMWADGTVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0105245_1073075023300009098Miscanthus RhizosphereVIAAFAAALSIWGAVTGFYGTKHWQPVKVCQATYRSDRFAMAQLTIAGRRHIAALHLLNAKRGWVVMWSDGRVNPRIGPSTAPLVLAEVTRLKAQCLAP*
Ga0105245_1176545113300009098Miscanthus RhizosphereVTGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRSHVAALHYFDRRTGWVVMWADGKVNRRIGLSTRPLVLAEVTRLKAKCLAP*
Ga0105243_1028350223300009148Miscanthus RhizosphereMIVVVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRSHVAALHYFDRRTGWVVMWADGKVNRRIGLSTRPLVLAEVTRLKAKCLAP*
Ga0075423_1049761823300009162Populus RhizosphereMIVAALVATIWAAVTGFYGTRHWTPIDVCKGSYLQDRFALVQAQIHGRRHIVALHYSAKRGWVVMWADGRVNPRVPGSIRPLVIAEVTRLKAKCLAP*
Ga0075423_1209750023300009162Populus RhizosphereWAAVTGFYSTRSWTPIDVCKADYRGDHFALVQARIRGARHIAALHFLNPRRGWVVMWADGKVNPKIGPHTRSLVLAEMTRLKAKCLAP*
Ga0105242_1008478333300009176Miscanthus RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIRGTPNVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0105248_1299554013300009177Switchgrass RhizosphereMIVAVALAVTIWGAMTGFYGTRQWQPVDVCKATYMGDQFAMVKATVSGKPHVAALHYLDRRTGWVVMWADGTVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0105237_1073240623300009545Corn RhizosphereVTLIALAATIWAAVTGFYGTRNWAPIDVCKATYMGEDFALVQAKIRGARHIAALHFLNPKRGWVVMWADGRVNPRISPYTRLLVQAEVTRLKAKCLAP*
Ga0105237_1093980113300009545Corn RhizosphereMIVVVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRSHVAALHYFDRRTGWVVMWADGKVNRRIGLSTRPLVL
Ga0105249_1329497123300009553Switchgrass RhizosphereVTAIAVAVTIWGAVTGFYGTRHWQPLDVCHARYMGDRFALVQARIRGRKHLAALHLYSGRTGWVVMWADGQVNRKIGPSARPLVLAELTRLKAKCLAP*
Ga0126382_1189171023300010047Tropical Forest SoilMIVAALVATIWAAVTGFYGTRHWAPIDVCKASYISDRFALVQARIHGRRHIAALHYYSAKRGWVVMWADGRVNPKVPGSIRPLVLSEVTRLKAKCLAP*
Ga0126370_1122151623300010358Tropical Forest SoilMIAAVALAVTIWGAVTGFYGTRQWRPVDVCKATYMGDRFAMVKATVRGTPHVVALHYLDRRTGWVVMWADGRVNRRIGPFTRPLVLAEVTG
Ga0126370_1174501723300010358Tropical Forest SoilGAERVPALAAADGAARVTVLALVATIWAAVTGFYGTRNWTPIDVCKATYMGDNFALVQAKIHGVRHVAALHFLNAKRGWVVMWADGRVNPKIGPHTSSLVQAEVTRLKAKCLAP*
Ga0126377_1205316113300010362Tropical Forest SoilAVTGFYGTRHWRPVDVCKATYSGDRFAMVKATIGGKPHVAALHYLDRRTGWVVMWADGRVNHRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0138514_10006193223300011003SoilMRLLATLSLALVGATPATIWGAVTGFYGTKRWTAIDVCQATYMSDRFALVQAKIAGRRHIAALHLSNAKRGWVVMWADGNVNGKIGPSIRPLVVAEVTRLKAQCLAP*
Ga0137388_1152754423300012189Vadose Zone SoilVRLLATLSLALVGATPATIWRAVTGFYGTKRWTALDVCQATYMRDRFALVQARVAGRHGVVALHLFNARRGWVVMWADGHVNRRIGPATRPLVLAEVTRLKAKCLAP*
Ga0137372_1005391833300012350Vadose Zone SoilMKPKPLLLVVLALAVAPAAGANGATIWGAVTGFYGTKRWTALDVCQARYMGDRFALVQARIAGRRHIAALHLYNARRGWVVMWADGRVNRKIGPSIRPLVLAEVTRLKAKCLAP*
Ga0137372_1013357433300012350Vadose Zone SoilKRLPALAGPDGGVGVIALAAAATIWGAVTGFFGTRHWQPLDVCQARYMGDRFALVQMRLHGHRHLAALHLYSAKTGWVVMWADGRVNRKIVPSIRPLVIGEVTRLKAQCLAP*
Ga0137369_1024915623300012355Vadose Zone SoilVRFLATLSLALVGATPATIWGAVTGFYGTKRWTAIDVCQASYMSDRFALVHARIAGRRHIAALHFFNARRGWIVMWADGKINRKIGPASQPDGLRLSP*
Ga0137375_1058595723300012360Vadose Zone SoilLPALAGADGGTGVRFLATLSLALVGATPATIWGAVTGFYGTKRWTAIDVCQASYMSDRFALVHARIAGRRHIAALHFFNARRGWIVMWADGKINRKIGPASQPDGLRLSP*
Ga0157298_1020611413300012913SoilMIAAVAAALSIWGAITGFYGTKQWQPLKVCKAEYRGDRFAMVQATVKGHRRVAALHLFVAKRGWVVMWADGKVNPRIGPSTAPLVLAEVTRLKAKCLAP*
Ga0164298_1080592213300012955SoilAPLAGGAGVIAAVAVGLSIWGAVTGFYGTKHWELVKTCQATYMGDRFAMIEAKIQGRRHIAALHLLNAKRGWAVMWADGTVNRKIGPSTAPLVRAEVTRLKAQCLAP*
Ga0164301_1103453423300012960SoilMIVAVALAATIWGAVTGFYGTRHWRPVDVCKASYMSDQFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGGVNRRIGPSTRPLVLDEVTRLKAKCLAP*
Ga0164309_1044563513300012984SoilMIVAVVLAATIWGAVTGFYGTRHWQPVDVCKATYLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRQIGPSTRLLV
Ga0164308_1011691023300012985SoilMIVAVVLAATIWGAVTGFYGTRNWQPVDVCKATYLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0164307_1052263423300012987SoilMIVAVVLAATIWGAVTGFYGTRNWQPVDVCKATHLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRRIGASTRPLVLAEVTRLKAKCLAP*
Ga0164305_1054906113300012989SoilIVAVVLAATIWGAVTGFYGTRHWQPVDVCKATYLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0164305_1187785013300012989SoilMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIRGTPHVAALHYLDRRTGWVVMWADGRVNRRIGSATRPLVLSEVTRLKAKCLAP*
Ga0157378_1125811613300013297Miscanthus RhizosphereIVVVALGATLWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0157378_1287725013300013297Miscanthus RhizosphereVIAAFAAALSIWGAVTGFYGTKHWQSVKVCQATYRSDRFAMAKLTIAGRRHIAALHLLNAKRGWVVMWSDGKVNPRIGPSTAPRVLAEVTRLKAQCLAP*
Ga0163162_1295342723300013306Switchgrass RhizosphereVVALAATIWGAVTGFYGTRPWRPVDVCKATYMRDHFAMVKATIGGRPHVAALHYFDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0157372_1226267313300013307Corn RhizosphereMLVVVALAATIWGAVPGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRPHVAALHYFDRRTGWVVMWADGKVNRRIGPSTRPLVLAE
Ga0157372_1311391423300013307Corn RhizosphereAVVLAATIWGAVTGFYGTRHWQPVDVCKATYLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0157375_1058752823300013308Miscanthus RhizosphereGAVTGFYGTRHWQPVDVCKATYLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0120154_114755323300013501PermafrostLTALILAGATPQTIWKAVTGFYGTRAVTIADICQARYRSDRFALVQVRIAGRRHIAALHLLNAKTGWVVMWSDGKVNRKIGPSTRRLVVAEVTRLKAQCLAP*
Ga0120155_115958823300013768PermafrostVRLLASAALILAGATPQTIWKAVTGFYGTRAVTIADICQARSRSDRFALVQVRIAGRRHIAALQLLNARAGWVVTWSDGKVNPRIGPATRPLVLAEVIAAATAAGITVHRVS
Ga0163163_1052900213300014325Switchgrass RhizosphereAADGGARVTLLALAATIWAAVTGFYGTRNWAPIDVCKATYMGEDFALVQAKIRGARHIAALHFLNPKRGWVVMWADGRVNPRISPYTRLLVQAEVTRLKAKCLAP*
Ga0157377_1102893323300014745Miscanthus RhizosphereMIVAVALAATIRGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP*
Ga0157379_1169110323300014968Switchgrass RhizosphereMIAAVAAALSIWGAITGFYGTKQWQPLKVCKAEYRGDRFAMVQATVKGRRRVAALHLFGAKRGWVVMWADGRVNPRISPYTRLLVQAEVTRLKAKCLAP*
Ga0157376_1250443513300014969Miscanthus RhizosphereMIVAVALAATIWGAVTGFYGTRQWQPVDVCKATYMGDRFAMVKATVSGKPHVAALHYLDRRTGWVVMWADGTVNRRIGPSTRPLVLA*
Ga0132258_1002816183300015371Arabidopsis RhizosphereMIVAVALAATIWGAVTGFYGTRQWQPVDVCKATYMGDRFAMVKATVSGKPHVAALHYLDRRTGWVVMWADGTVNRRIGRSTRPLVLAEVTRLKAKCLAP*
Ga0132257_10391224923300015373Arabidopsis RhizosphereVIALATVLTIWGAVTGFFGTRHWRPLDVCQARYMDDRFALVQLLLGGRKHIAALHLYSAKRGWVVMWADGHVNGKIGPATRPLVLAELTRLKAKCLAP*
Ga0132255_10266795723300015374Arabidopsis RhizosphereVTLAVLAATIWAAVTGFYGTRSWTPIDVCKADYRGDHFALVQARIRGARHIAALHFLNPRRGWVVMWADGKVNPKIGPHTRSLVLAEMTRLKAKCLAP*
Ga0163161_1126641023300017792Switchgrass RhizosphereMIVAVALAATIWGAVTGFYGTRQWQPVDVCKATYMGDQFAMVKATVSGKPHVAALHYLDRRTGWVVMWADGTVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0187788_1046445923300018032Tropical PeatlandMTLLALVVTIWGAVTGFYGTRHWTPIDVCKASYMGDRFALVQAGIRGRRHIAALHFLSARRGWVVMWADGRVNPKIGVSTRPLVLAEMTRLKAKCLAP
Ga0184624_1041173523300018073Groundwater SedimentMIVAVVLAATIWGAVTGFYGTRNWRPVDVCKATYLGNHFAMVKATIGGRPHVVALHYLDRRTGWVVMWADGKIKRRIGPSTRPLVLDEVTRLKAKCLAP
Ga0066655_1103236523300018431Grasslands SoilVIVAALVATIWGAVSGFYGTRHWTPIDVCKASYLQDQLALVQARIHGRRHIAALHYYGAKRGWVVMWADGHVNPKIGISVRPLVLAEVTRLKAKCLAP
Ga0173481_1057188223300019356SoilMVVAALVATIWGAVTGFYGTRHWTPVKVCHATYMGDQFAMVKATIRGRTHVAALHHYSPKVGWIVMWADGKVNRTIGPSTRALVLAEVTRLKAQCLAP
Ga0247678_103155023300024325SoilVTVLALAATIWAAVTGFYGTRNWAPIDVCKATYMGEDFALVQAKIRGARHIAALHFLNPKRGWVVMWADGRVNPKISPYTRSLVQAEVTR
Ga0207653_1043330323300025885Corn, Switchgrass And Miscanthus RhizosphereVTLIALAATIWAAVTGFYGTRNWTPTDVCKATYMGEDFALVQAKIRGARHIAALHFLNPKRGWVVMWADGRVNPRISPYTRSLVQAEVTRLKAKCLAP
Ga0207647_1039631623300025904Corn RhizosphereMIVAVALAVTIWGAMTGFYGTRQWRPVDVCKATFMGDQFAMVKATVSGKPHVAALHYLDRRTGWVVMWADGTVNRRIGPSTKPIT
Ga0207707_1000349373300025912Corn RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207660_1001024223300025917Corn RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIRGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207687_1063858323300025927Miscanthus RhizosphereMIVVVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRSHVAALHYFDRRTGWVVMWADGKVNRRIGLSTRPLVLAEVTRLKAKCLAP
Ga0207706_1055849523300025933Corn RhizosphereMIVVVALAATIWGAVTGFYGTRHWRPVDVCKATYMRDHFAMVKATIGGRPHVAALHYFDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207709_1065788723300025935Miscanthus RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRSHVAALHYFDRRTGWVVMWADGKVNRRIGLSTRPLVLAEVTRLKAKCLAP
Ga0207669_1107837713300025937Miscanthus RhizosphereMAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207711_1194391513300025941Switchgrass RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIRGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPS
Ga0207689_1127525713300025942Miscanthus RhizosphereDPRAERRASLAGADRAARMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207702_1019499923300026078Corn RhizosphereMIVAVVLAATIWGAVTGFYGTRHWQPVDVCKATYLGDRFAIVKATIRGTPHVAALHYLDRRTGWVVMWADGKVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207702_1130380523300026078Corn RhizosphereALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIRGTPHVAALHYLDRRTGWVVMWADGRVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207702_1225253913300026078Corn RhizosphereMIVAVALAVTIWGAMTGFYGTRQWRPVDVCKATFMGDQFAMVKATINGKPHVAALHYLDRRTGWVVMWADGTVTRRIGPSTRPLVLAEVTRLTAKCLAP
Ga0207675_10048377813300026118Switchgrass RhizosphereMIVAVALAVTIWGAMTGFYGTRQWRPVDVCKATFMGDQFAMVKATINGKPHVAALHYLDRRTGWVVMWADGTVNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207683_1001224763300026121Miscanthus RhizosphereMIVAVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDRFAVVKATIHGTPHVAALHYLDRRTGWVVMWADGRGNRRIGPSTRPLVLAEVTRLKAKCLAP
Ga0207698_1104225223300026142Corn RhizosphereMIVVVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRPHVAALHYFDRRTGWVVMWADGKVNRRIGLSTRPLVLAEVTRLKAKCLAP
Ga0209474_1069819613300026550SoilVMLLAVTTATIWGAITGFYGTRHWQPLDVCQARYRGDRFALVQARIHGRRHLAALHLYSAKTGWVVMWADGRVNRKIGPSTAPLVLAEVTRLKAQCLAP
Ga0265318_1010348223300028577RhizosphereMPLVLATALSIWGAVTGFYGTRQWAPLDVCQARYMGDRFALVQASIHGRRHIAALHLFSKKTGWVVMWADGRVGPKIGLSTRPLVLAEVTRLKAKCLAP
Ga0307299_1037316323300028793SoilMIVAVVLAATIWGAVTGFYGTRNWRPVDVCKATYLGNHFAMVKATIGGRPHVVALHYLDRRTGWVVMWADGKINRRIGPSTRPLVLVEVTRLKAKCLAP
Ga0307305_1036830023300028807SoilMIVAVVLAATIWGAVTGFYGTRNWRPVDVCKATYLGNHFAMVKATIGGRPHVVALHYLDRRTGWVVMWADGKINRRIGPSTRPLVLVEVTRLKAKCLAPGWSAPRVI
Ga0307312_1086797413300028828SoilMKLLAAVALVLTGAAPQTIWKAVTGFYGTRAVMFADICQARYFSERFALVQVWIAGRRHIAALHLLNARTGWVVMWSDGKVNRKIGPSTQPVVLAEVTRLKAKCLAP
Ga0247826_1113135213300030336SoilAVTIWGAVTGFYGTRHWRPVDVCKATYMGDHFAMVKATIGGRSHVAALHYFDRRTGWVVMWADGKVNRRISPSTRPLVLAEVTRLKAKCLAP
Ga0307468_10037545023300031740Hardwood Forest SoilMIVVVALAATIWGAVTGFYGTRHWRPVDVCKATYMSDHFAMVKATIGGRSHVAALHYLDRRTGWVVMWADGKVNRRIGLSTRPLVLAEVTRLKAKCLAP
Ga0310897_1059031413300032003SoilMIVAVALAATIWGAVTGFYGTRQWQPVDVCKATYMGDRFAMVKATVSGKTHVAALHYLDRRTGWVVMWADGTVNRRIGPSTRPLVLAEVTRLKAKCLAP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.