Metagenome / Metatranscriptome Family F060439

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F060439
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	56 residues
Representative Sequence	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQSGTPRGQ
Number of Associated Samples	96
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.31 %
% of genes near scaffold ends (potentially truncated)	24.06 %
% of genes from short scaffolds (< 2000 bps)	79.70 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.406 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.023 % of family members)
Environment Ontology (ENVO)	Unclassified (21.053 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (28.571 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 21.18% β-sheet: 0.00% Coil/Unstructured: 78.82%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF00440	TetR_N	3.76
PF14559	TPR_19	1.50
PF04052	TolB_N	1.50
PF00990	GGDEF	1.50
PF04214	DUF411	1.50
PF06863	DUF1254	1.50
PF13411	MerR_1	1.50
PF03734	YkuD	0.75
PF03466	LysR_substrate	0.75
PF00126	HTH_1	0.75
PF00171	Aldedh	0.75
PF01941	AdoMet_Synthase	0.75
PF13358	DDE_3	0.75
PF13763	DUF4167	0.75
PF02321	OEP	0.75
PF03092	BT1	0.75
PF12700	HlyD_2	0.75
PF05013	FGase	0.75
PF08031	BBE	0.75
PF00005	ABC_tran	0.75
PF01627	Hpt	0.75
PF14659	Phage_int_SAM_3	0.75
PF13579	Glyco_trans_4_4	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	1.50
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.50
COG3019	Uncharacterized metal-binding protein, DUF411 family	Function unknown [S]	1.50
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.50
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.75
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.75
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.75
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.75
COG1812	Archaeal S-adenosylmethionine synthetase	Coenzyme transport and metabolism [H]	0.75
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.75
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.75
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.75
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.14 %
Unclassified	root	N/A	37.59 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.38 %
Unclassified	root	N/A	37.59 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	47.37 %
Unclassified	root	N/A	37.59 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	35.34 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.26 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.75 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	27.82 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	4.51 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	3.01 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.26 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.75 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	27.82 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	2.26 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.26 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	1.50 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1.50 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.75 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.75 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.75 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	27.82 %
Hyphomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	2.26 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.26 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	1.50 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1.50 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.75 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.75 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.75 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002124\|C687J26631_10153696	Not Available	771	Open in IMG/M
3300002503\|C687J35164_10001941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	7330	Open in IMG/M
3300003465\|P52013CM_1035879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1313	Open in IMG/M
3300005045\|Ga0071328_122433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	2010	Open in IMG/M
3300005045\|Ga0071328_152877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1984	Open in IMG/M
3300005162\|Ga0066814_10032643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	788	Open in IMG/M
3300005164\|Ga0066815_10047766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	698	Open in IMG/M
3300005169\|Ga0066810_10053903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	794	Open in IMG/M
3300005332\|Ga0066388_100436582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	1952	Open in IMG/M
3300005332\|Ga0066388_100987776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1408	Open in IMG/M
3300005332\|Ga0066388_103641975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	786	Open in IMG/M
3300005332\|Ga0066388_104210557	Not Available	733	Open in IMG/M
3300005363\|Ga0008090_14105320	Not Available	971	Open in IMG/M
3300005529\|Ga0070741_10132058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	2550	Open in IMG/M
3300005529\|Ga0070741_10186785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2033	Open in IMG/M
3300005713\|Ga0066905_100316581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1232	Open in IMG/M
3300005713\|Ga0066905_100604609	Not Available	929	Open in IMG/M
3300005713\|Ga0066905_100821671	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300005713\|Ga0066905_101873504	Not Available	554	Open in IMG/M
3300005764\|Ga0066903_106266876	Not Available	621	Open in IMG/M
3300005937\|Ga0081455_10044157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3891	Open in IMG/M
3300005937\|Ga0081455_10124092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	2030	Open in IMG/M
3300006844\|Ga0075428_100201943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2149	Open in IMG/M
3300006845\|Ga0075421_100643884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	1239	Open in IMG/M
3300006847\|Ga0075431_101070175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	772	Open in IMG/M
3300006865\|Ga0073934_10193829	Not Available	1390	Open in IMG/M
3300009100\|Ga0075418_10436552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1402	Open in IMG/M
3300009100\|Ga0075418_10606078	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300009146\|Ga0105091_10120727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1214	Open in IMG/M
3300009146\|Ga0105091_10170372	Not Available	1028	Open in IMG/M
3300009146\|Ga0105091_10379560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	701	Open in IMG/M
3300009147\|Ga0114129_12597979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	604	Open in IMG/M
3300009157\|Ga0105092_10042035	All Organisms → cellular organisms → Bacteria	2443	Open in IMG/M
3300009157\|Ga0105092_10230071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1039	Open in IMG/M
3300009157\|Ga0105092_10740891	Not Available	573	Open in IMG/M
3300009166\|Ga0105100_10522749	Not Available	724	Open in IMG/M
3300009167\|Ga0113563_10732546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1112	Open in IMG/M
3300009168\|Ga0105104_10209307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1060	Open in IMG/M
3300009553\|Ga0105249_11208325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	827	Open in IMG/M
3300009678\|Ga0105252_10524965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	546	Open in IMG/M
3300009792\|Ga0126374_11770381	Not Available	516	Open in IMG/M
3300009807\|Ga0105061_1038360	Not Available	699	Open in IMG/M
3300009815\|Ga0105070_1006707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	1819	Open in IMG/M
3300009815\|Ga0105070_1078869	Not Available	633	Open in IMG/M
3300009837\|Ga0105058_1054481	Not Available	899	Open in IMG/M
3300010154\|Ga0127503_11004632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	728	Open in IMG/M
3300012948\|Ga0126375_12103581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300012957\|Ga0164303_11043323	Not Available	585	Open in IMG/M
3300012958\|Ga0164299_10190334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1176	Open in IMG/M
3300012961\|Ga0164302_10915301	Not Available	675	Open in IMG/M
3300012984\|Ga0164309_10371076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1057	Open in IMG/M
3300013294\|Ga0120150_1063205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	709	Open in IMG/M
3300014318\|Ga0075351_1104859	Not Available	615	Open in IMG/M
3300014823\|Ga0120170_1026420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1534	Open in IMG/M
3300015371\|Ga0132258_13803237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1028	Open in IMG/M
3300017792\|Ga0163161_12103053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	502	Open in IMG/M
3300018028\|Ga0184608_10315427	Not Available	687	Open in IMG/M
3300018076\|Ga0184609_10472058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	574	Open in IMG/M
3300018429\|Ga0190272_12075746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	605	Open in IMG/M
3300018469\|Ga0190270_10475250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1183	Open in IMG/M
3300019233\|Ga0184645_1124798	Not Available	539	Open in IMG/M
3300019458\|Ga0187892_10001554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	51712	Open in IMG/M
3300019458\|Ga0187892_10001979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	43782	Open in IMG/M
3300019458\|Ga0187892_10006204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17997	Open in IMG/M
3300019458\|Ga0187892_10007264	All Organisms → cellular organisms → Bacteria → Proteobacteria	15879	Open in IMG/M
3300019458\|Ga0187892_10015124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8453	Open in IMG/M
3300019487\|Ga0187893_10043977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4686	Open in IMG/M
3300019487\|Ga0187893_10811100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	567	Open in IMG/M
3300025119\|Ga0209126_1116946	Not Available	736	Open in IMG/M
3300025159\|Ga0209619_10239577	Not Available	994	Open in IMG/M
3300025160\|Ga0209109_10220062	Not Available	930	Open in IMG/M
3300025164\|Ga0209521_10660917	Not Available	513	Open in IMG/M
3300025310\|Ga0209172_10554702	Not Available	520	Open in IMG/M
3300025312\|Ga0209321_10467435	Not Available	576	Open in IMG/M
3300025313\|Ga0209431_10130586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1986	Open in IMG/M
3300025313\|Ga0209431_10767073	Not Available	705	Open in IMG/M
3300025318\|Ga0209519_10231997	Not Available	1082	Open in IMG/M
3300025324\|Ga0209640_10154865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1961	Open in IMG/M
3300025324\|Ga0209640_10175790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1826	Open in IMG/M
3300025325\|Ga0209341_10247398	Not Available	1480	Open in IMG/M
3300025325\|Ga0209341_10787387	Not Available	722	Open in IMG/M
3300025325\|Ga0209341_11276013	Not Available	513	Open in IMG/M
3300025326\|Ga0209342_10087589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2888	Open in IMG/M
3300025961\|Ga0207712_11729896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	560	Open in IMG/M
3300025985\|Ga0210117_1075469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	588	Open in IMG/M
3300027056\|Ga0209879_1066046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	576	Open in IMG/M
3300027379\|Ga0209842_1049395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	764	Open in IMG/M
3300027511\|Ga0209843_1065627	Not Available	630	Open in IMG/M
3300027523\|Ga0208890_1026144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	862	Open in IMG/M
3300027675\|Ga0209077_1181424	Not Available	588	Open in IMG/M
3300027722\|Ga0209819_10099853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1013	Open in IMG/M
3300027743\|Ga0209593_10058437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1470	Open in IMG/M
3300027909\|Ga0209382_12270514	Not Available	511	Open in IMG/M
3300027952\|Ga0209889_1109966	Not Available	547	Open in IMG/M
3300027954\|Ga0209859_1024515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1039	Open in IMG/M
3300028587\|Ga0247828_10095961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1394	Open in IMG/M
3300028597\|Ga0247820_10235832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1177	Open in IMG/M
3300030606\|Ga0299906_10799863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	701	Open in IMG/M
3300030606\|Ga0299906_11325549	Not Available	514	Open in IMG/M
3300030620\|Ga0302046_11098435	Not Available	629	Open in IMG/M
3300031114\|Ga0308187_10334810	Not Available	579	Open in IMG/M
3300031256\|Ga0315556_1017656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3263	Open in IMG/M
3300031274\|Ga0307442_1016062	Not Available	2816	Open in IMG/M
3300031274\|Ga0307442_1042507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1468	Open in IMG/M
3300031331\|Ga0307432_1051057	All Organisms → cellular organisms → Bacteria → Proteobacteria	1310	Open in IMG/M
3300031360\|Ga0307444_1069590	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300031537\|Ga0307419_10264370	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300031539\|Ga0307380_10135240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2474	Open in IMG/M
3300031565\|Ga0307379_10235698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	1847	Open in IMG/M
3300031575\|Ga0315532_1200697	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300031720\|Ga0307469_10123202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1880	Open in IMG/M
3300031740\|Ga0307468_101346396	Not Available	653	Open in IMG/M
3300031740\|Ga0307468_102222932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	531	Open in IMG/M
3300031772\|Ga0315288_10090293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3528	Open in IMG/M
3300031772\|Ga0315288_10857232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	830	Open in IMG/M
3300031949\|Ga0214473_10012450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9978	Open in IMG/M
3300031949\|Ga0214473_10259472	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300031949\|Ga0214473_11540845	Not Available	669	Open in IMG/M
3300031965\|Ga0326597_11394837	Not Available	679	Open in IMG/M
3300031965\|Ga0326597_11493411	Not Available	649	Open in IMG/M
3300031999\|Ga0315274_10508706	Not Available	1359	Open in IMG/M
3300031999\|Ga0315274_10969881	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300032164\|Ga0315283_11273860	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	764	Open in IMG/M
3300032180\|Ga0307471_100018615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5003	Open in IMG/M
3300032180\|Ga0307471_102579168	Not Available	644	Open in IMG/M
3300033417\|Ga0214471_10113071	All Organisms → cellular organisms → Bacteria	2235	Open in IMG/M
3300033551\|Ga0247830_10266240	Not Available	1303	Open in IMG/M
3300034090\|Ga0326723_0445568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	591	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.23%
Host-Associated	Host-Associated	9.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.17%
Aquatic	Environmental → Aquatic	24.06%
Plants	Host-Associated → Plants	9.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.15%
Freshwater	Environmental → Aquatic → Freshwater	14.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.77%
Marine	Environmental → Aquatic → Marine	6.02%
Cave	Environmental → Terrestrial → Cave	5.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.01%
Sediment	Environmental → Aquatic → Sediment	2.26%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.50%
Peat	Environmental → Terrestrial → Peat	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.83%
Loam	Environmental → Terrestrial → Soil → Loam	17.29%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.02%
Sand	Environmental → Terrestrial → Soil → Sand	6.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.77%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.26%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	5.26%
Lake	Environmental → Aquatic → Freshwater → Lake	3.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.26%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.50%
Clay	Environmental → Terrestrial → Soil → Clay	1.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.75%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.27%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	8.27%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.77%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.26%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	5.26%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.76%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.01%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.01%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.50%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.75%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.75%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.02%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	8.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.27%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	8.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.77%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.26%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.76%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.76%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	3.76%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.26%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	1.50%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.50%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	1.50%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.50%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.75%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.75%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.75%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.75%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.75%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.75%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300002503	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3	Environmental	Open in IMG/M
3300003465	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300025119	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes)	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025312	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031256	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10	Environmental	Open in IMG/M
3300031274	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30	Environmental	Open in IMG/M
3300031331	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031537	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-30	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031575	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment WE1603-70	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1035527092	3300001431	Soil	MKTSLVIMLAVAGLAVGTATLAISNPAFAGGGGPDKWCGAVVC
C687J26631_101536962	3300002124	Soil	MKTLLAIALTXVLAAATLTFGAPMTPMSGTAVAGGNIGPQYWCGAAVCPPQTPKGTHRGY
C687J35164_100019417	3300002503	Soil	MKTLLAIALTSVLAAATLTFGAPMTPMSGTAVARGNIGPQYWCGAAVCPPQTPKGTHRGY
P52013CM_10358792	3300003465	Ore Pile And Mine Drainage Contaminated Soil	MKTSLAILATALLAAAILTFGAPMTQMSGTAVAGAGGPDKWCGAAVCPSQHPPWIHRGR*
Ga0071328_1224331	3300005045	Permafrost	MKTLLAIALLAAGMLTFGAPVTPMSGTAVAGGGGPDKWCGAAVCP
Ga0071328_1528771	3300005045	Permafrost	MKTSLAIMLAVAALTIGTATVAPISSTAVAGDDRPYKWCGAAACAPRQTKPAPASQRGL*
Ga0066814_100326432	3300005162	Soil	MKTLLAVMLAATALMIGAATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQLGTHRGP*
Ga0066815_100477662	3300005164	Soil	MKTSLAIVLAVAALTIGTATVAPISSTAMAGGGGPDKWCGAAVCPPKQAPSGTLLGQ*
Ga0066810_100539032	3300005169	Soil	MKTSLTIVLAVAALTIGTATVAPISSTAMAGGGGPDKWCGAAVCPP
Ga0066388_1004365823	3300005332	Tropical Forest Soil	MKTLLAIALAVAALTIGTATVAPISSIAVAGGGGPDKWCGAAVCPPKQTQSGTHSGP*
Ga0066388_1009877763	3300005332	Tropical Forest Soil	MKTSLAIMLAVATLAIGTATLAISNPAFAGGGGPDKWCGAAVCPPKQTQSGAHRGS*
Ga0066388_1036419752	3300005332	Tropical Forest Soil	MKTSLAIMLAVATLAVGTATLAISSPVFAGGGGPDKWCGAAVCPPKLIQSGAHRGS*
Ga0066388_1042105571	3300005332	Tropical Forest Soil	MKAFLAFALAAAVLTIGVATVTPMSGAAVAGVPDKWCGAPVCPPRHPPWIRGR*
Ga0008090_141053203	3300005363	Tropical Rainforest Soil	MKTLLAIALAVAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQLGMRGQ*
Ga0070741_101320583	3300005529	Surface Soil	MKTLLTIALVAAALTIGTAGVAPISGTAVAGGGGPDKWCGAQVCPPNPKTQSGTYQTHRR
Ga0070741_101867851	3300005529	Surface Soil	MRTLLAILLASGLLTFGAPVKPISGTAIAGGGGPDKWCGAQVCPPKPHRGW*
Ga0066905_1003165811	3300005713	Tropical Forest Soil	MKTSLAIMLAVAALTISTVTVAPISSTAYAGGGGPDKWCGAVVCPPKQIRSGAHGGS*
Ga0066905_1003554873	3300005713	Tropical Forest Soil	MKTLLAIALAAAALTIGTATVAPIFSTAVAGGGGAWQPPDKWCGAAGCARRISNSQERIVGGKPQ*
Ga0066905_1006046092	3300005713	Tropical Forest Soil	MKTLLAIALAAAALTIGTATVAPISSTAVARGGGPDKWCGAAVCPPKLQQSGMHRGQ*
Ga0066905_1008216713	3300005713	Tropical Forest Soil	MKTSLAIMLAVATLAVGTATLTNPAFAGGGGPDKWCGAAVCPPKQIQSGAHRGS*
Ga0066905_1014639841	3300005713	Tropical Forest Soil	MKTLLAIALAAAALTIGTATMAPIFNTAVAGGGGAWQPPDKWCGAAGCAHRISNSQERIVGGKPQ*
Ga0066905_1018735041	3300005713	Tropical Forest Soil	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNLQRLGTHRGR*
Ga0066903_1062668762	3300005764	Tropical Forest Soil	MKTLLAIALAVAALTIGTATVAPISTTAVAGGGGPDKWCGAAVCPPKQTQLGMRGQ*
Ga0081455_100441573	3300005937	Tabebuia Heterophylla Rhizosphere	MKTSLAIVLLAAVALTFGAPVTPISGTAVAGGGGPEKWCGAQVCPPNPRTQSGTHRGQ*
Ga0081455_101240923	3300005937	Tabebuia Heterophylla Rhizosphere	MKTLLAIALAVAALAIGTAIVSPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR*
Ga0075428_1002019432	3300006844	Populus Rhizosphere	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR*
Ga0075421_1006438841	3300006845	Populus Rhizosphere	MKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS*
Ga0075431_1010701752	3300006847	Populus Rhizosphere	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNP
Ga0073934_101938293	3300006865	Hot Spring Sediment	MKTLLAIALAAAALMIGTATVAPISGTAVAGGGGPDKWCGAAICPSPRPPWTYRGR*
Ga0075418_104365522	3300009100	Populus Rhizosphere	MKTSLAIIFTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAHRGS*
Ga0075418_106060781	3300009100	Populus Rhizosphere	MKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWSGAVVCPPKQIQSGAYRGS*
Ga0105091_101207272	3300009146	Freshwater Sediment	MKTSLAIMLAVAALAVGTVTLAISNPAFAGGGGPDKWCGAVVCP
Ga0105091_101703721	3300009146	Freshwater Sediment	MKTSLAIMLAVAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNLQRLGTHRGR*
Ga0105091_103795602	3300009146	Freshwater Sediment	MKTLLAITLAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR*
Ga0114129_125979791	3300009147	Populus Rhizosphere	MKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKLIQSGAHRGS*
Ga0105092_100420353	3300009157	Freshwater Sediment	MKTSQAIMLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCSPKQIQSGAYRGS*
Ga0105092_102300712	3300009157	Freshwater Sediment	MKTSLAIALAVAALTIGTATVAPISSTAVAGDGRPDKWCGAAACAPRQTQPATQ
Ga0105092_107408911	3300009157	Freshwater Sediment	MKTLLAIALAVAALTIGTATVAPISSTAVAGGAGPDKWCGAAVCPPRQTQLGTHRGR*
Ga0105100_105227492	3300009166	Freshwater Sediment	MKTSLAIVLAVAALTIGTATIAPISSTAVAGGGGPDNWCGAAWCPPRQTQSGTHRGP*
Ga0113563_107325461	3300009167	Freshwater Wetlands	MKTSLAIMLAVAALTIGTATVQPISSTAVAGGGGPDKWCGAAVCPPTPTQSGTHRGS*
Ga0105104_102093072	3300009168	Freshwater Sediment	MKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCSPKQIQSGAYRGS*
Ga0105249_112083251	3300009553	Switchgrass Rhizosphere	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWFGAAACPANLQRLGTHRGR*
Ga0105252_105249652	3300009678	Soil	MKTSLAIVLAVAVLTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNPL
Ga0126374_117703812	3300009792	Tropical Forest Soil	MKTLLAVALAVAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQLGMRGQ*
Ga0105061_10383601	3300009807	Groundwater Sand	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPTQAPPWIHRGR*
Ga0105070_10067072	3300009815	Groundwater Sand	MKTSLAIMLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS*
Ga0105070_10788691	3300009815	Groundwater Sand	MKTLLAIALAAAALMIGTATVAPISGTAVAGGGGPDKWCGAAVCPPKQTPLGTHRGR*
Ga0105058_10544811	3300009837	Groundwater Sand	MKTLLAIALLAAGMLTFGAPVTPMSGTAAAGGGGPDKWCGAAVCPPKKPYPGTHRGW*
Ga0127503_110046322	3300010154	Soil	MIVLVIGDRKRSAEMKTLLAIALAVAALTIGTATVAPISSTAMAGGGGPDKWCGAAVCPP
Ga0126375_104347932	3300012948	Tropical Forest Soil	MKTLLAIALAAAALTIGTATVAPIFSTAVAGGGGAWQPPDKWCGAAGCAHRISNSQERIVGGRPQ*
Ga0126375_121035812	3300012948	Tropical Forest Soil	MKTLLAIALAVAALTIGTATMAPIFNTAVAGGGGAWQPPDKWCGAAGCAHRISNSQE
Ga0164303_110433231	3300012957	Soil	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGAGPDKWCGAAVCPPKQTQSGTYRGP*
Ga0164299_101903342	3300012958	Soil	MKTSLAIILAVAAMTIGTATIPPISSTAVAGGGGPDKWCGAAVCPPKQTQSGTHGRA*
Ga0164302_109153011	3300012961	Soil	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQSGTYRER*
Ga0164309_103710762	3300012984	Soil	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGGGPDKWCGAAVCPPKQAPSGTLLGQ*
Ga0120150_10632051	3300013294	Permafrost	MKTLLAIALAAATLTFGATLTPISSTAVAGGGGPDKWCGAAVCPPKQTPHSGTYRGP*
Ga0075351_11048591	3300014318	Natural And Restored Wetlands	MKTSLAIMLAVAALTIGSATVMPISSTAFAGGGGPDKWCGAAICPPKQKLSATYHRP*
Ga0120170_10264201	3300014823	Permafrost	MKTLLAIALAAATLTFGATLTPISSTAVAGGGGPDKWCGAAVCPPKQTPHSGTHR
Ga0132258_138032372	3300015371	Arabidopsis Rhizosphere	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQSGTPRGQ*
Ga0163161_121030532	3300017792	Switchgrass Rhizosphere	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAVCPPNLQRLGT
Ga0184608_103154271	3300018028	Groundwater Sediment	MKTLLAIALLAAGMLTFGAAVIPMSGTAVAGNGGPDKWCGAAVCPPKKTYPGTHRG
Ga0184609_104720581	3300018076	Groundwater Sediment	MKTSLAIVLAVAALTIGTATIAPISSTAVAGGGGPDKWCGAVVCPTKQTQSGTHRGP
Ga0190272_120757462	3300018429	Soil	MKTSLAIMLAVAALTIGTATVAPISSTAVAGDDRPYKWCGAAACAPRQTKPAPASQRGL
Ga0190270_104752503	3300018469	Soil	MKTLLAIALAVAALTIGTATVSPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR
Ga0184645_11247981	3300019233	Groundwater Sediment	MKTLLAIALLAAGMLTFGAAVTPMSGTAVAGNGGPDKWCGAAVCPPKKTYPGTHRGW
Ga0187892_100015543	3300019458	Bio-Ooze	MKTSLAIALAVAALTIGTASVAPISSTALAGGGGPDKWCGATVCPPRPTHFGTHRGS
Ga0187892_100019791	3300019458	Bio-Ooze	MKAFLVFALAAAALTIGVATVTPISGIAVAGGGGPEKWCGAAV
Ga0187892_100062047	3300019458	Bio-Ooze	MRTLLAILFALGLLTFGAPVTPISGTAVAGGGGPDKWCGAAVCPTKQPPWIRGR
Ga0187892_100072641	3300019458	Bio-Ooze	MKTFLVFALAAAALTIGVATVTPISGIAVAGGGGPEKWCGAAV
Ga0187892_100151243	3300019458	Bio-Ooze	MKTSLAIMLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS
Ga0187893_100439776	3300019487	Microbial Mat On Rocks	MKTLLAIALLAAGMLTFGSPVTPMSGTAVAGGGGPDKWCGAAICPTQTPPGTHRGR
Ga0187893_108111001	3300019487	Microbial Mat On Rocks	MKTSLAIALAVAALTIGTATVAPISSTAVAVNGKPYKWCCAAACAPRGTKPAPESQRGL
Ga0209126_11169462	3300025119	Soil	MKTLLAIALTVAALTIGTATVAPISSTAIAGGGGPVKWCGAAACAHRFGPQ
Ga0209619_102395772	3300025159	Soil	MKTSLAIVLAFGLAAATLTFGAAVTPISGTAVAGGGGPDKWCGAAICPPKQTPLGTYRGR
Ga0209109_102200621	3300025160	Soil	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPPKQTPLGTYRGR
Ga0209521_106609172	3300025164	Soil	MKTSLAIVLAFGLAAATLTFGAAVTPISGTAVAGGGGPDKWCGAAICPTQAPPWIHRGR
Ga0209172_105547022	3300025310	Hot Spring Sediment	MKTLLAIALAAAALMIGTATVAPISGTAVAGGGGPDKWCGAAICPSPRPP
Ga0209321_104674352	3300025312	Soil	MKTLLAIALTLVLAAATLTFGAPMTPMSGTAVAGGNIGPQYWCGAAVCPPQTPKGTHRGY
Ga0209431_101305861	3300025313	Soil	TSRTITLAAATLLLAAAVLTLGTTVTPISGTAVAGGGGPDKWCGAAVCPPKQTPVPYRGR
Ga0209431_107670732	3300025313	Soil	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPTQAPP
Ga0209519_102319971	3300025318	Soil	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPTQAPPWIHRGR
Ga0209640_101548651	3300025324	Soil	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAVCPPKQLPLGTYRGR
Ga0209640_101757902	3300025324	Soil	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGGGPDKWCGAAVCPLKQTQSGTHRGP
Ga0209341_102473982	3300025325	Soil	MKTSLAILTIVLLAAAALTVGAPATPISGTAIAGGNIGPQYWCGAAVCPPKQTPLGTYRG
Ga0209341_107873872	3300025325	Soil	MKTSRTITLAAATLLLAAAVLTLGTTVTPISGTAVAGGGGPDKWCGAAVCPPKQTPVPYRGR
Ga0209341_112760131	3300025325	Soil	MKALLAIVLLAAGMLTFGSTVAPISGTAVAGGGGPDKWCGAAICPTQAPPGTHRGR
Ga0209342_100875894	3300025326	Soil	MKTSRTIALAAATLLLAAAALTLGATVTPISGTAVAGGGGPDKWCGAAVCPPKQTPVPYRGR
Ga0207712_117298962	3300025961	Switchgrass Rhizosphere	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAACPPNLQRLGTHRG
Ga0210117_10754692	3300025985	Natural And Restored Wetlands	MKKSLAIALAVAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPRQTQL
Ga0209879_10660461	3300027056	Groundwater Sand	MKTSLAIMLAVAALTIGTATIAPISSTAVAGGGGPDKWCGAAVCPPR
Ga0209842_10493952	3300027379	Groundwater Sand	MKTSLAIALAVAALTIGTATMAPISSTAVAGGSGPDKWCGAAVCPPRQTQSGWHRGP
Ga0209843_10656271	3300027511	Groundwater Sand	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPPK
Ga0208890_10261441	3300027523	Soil	MKTLLAIALAVAALTIGAATVAPISSTAVAGGGGPDKWCGAAVCPPQQTQSGTYRGR
Ga0209077_11814242	3300027675	Freshwater Sediment	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR
Ga0209819_100998532	3300027722	Freshwater Sediment	MKTSLAIMLAVAALAVGTVTLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAHRGS
Ga0209593_100584372	3300027743	Freshwater Sediment	MKTLLAIALAVAALTIGTATVAPISNIAVAGGGGPDKWCGAAVCPPT
Ga0209382_122705141	3300027909	Populus Rhizosphere	AAMKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS
Ga0209889_11099661	3300027952	Groundwater Sand	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGGGPDKWCGAVVCPTKQTQSGTHRGP
Ga0209859_10245152	3300027954	Groundwater Sand	MKTSLAIVLAVAALTIGTATMAPISRTAVAGGGGPDKWCGAAICPTQAPPWIHRGR
Ga0247828_100959611	3300028587	Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAACPPNLQRLGTHRGR
Ga0247828_112347491	3300028587	Soil	MKTSLAIVLAAAALTIGTATVAPIFSTAVAGGGGAWQPPDKWCGAAACAHGISNSQERIVGGKPQ
Ga0247820_102358322	3300028597	Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAACPPNLQRLETHRGR
Ga0299906_107998632	3300030606	Soil	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGGGPDKWCGAAVCPTKQTQSGTHRGP
Ga0299906_113255491	3300030606	Soil	MKTLLAIVLTSALAVATLTFGAPVTPMSGTAVAGGNIGPQYWCGAAVCPPQTPKGTHRGY
Ga0302046_110984351	3300030620	Soil	MKTSLAIVLASVLAAATLTFGAPVTPMSGTAVAGGNIGPQYWCGATICPPKKTYPGTHRG
Ga0308187_103348101	3300031114	Soil	MKTLLAIALLAAGMLTFGAAVIPMSGTAVAGNGGPDKWCGAAVCPPKKTYPGTHR
Ga0315556_10176564	3300031256	Salt Marsh Sediment	MKTLLAIALTAATLTIGTAIVAPISGIALAGGGGPDKWCGGAMCPRRPLEVHHCR
Ga0307442_10160621	3300031274	Salt Marsh	MKTLLAIALTAATLTIGTATVAPISGTALAGGGGPDKWCGGAMCPRRPLEVHHCR
Ga0307442_10425071	3300031274	Salt Marsh	MKTLLAIALTAATLTIGTATVAPISGIALAGGGGPDKWCGGAMCPRRPLEVHHCH
Ga0307432_10510573	3300031331	Salt Marsh	MKTLLAIALTAATLTIGTAIVAPISGIALAGGGGPDKWCGGAMCPRRPLEVHH
Ga0307444_10695901	3300031360	Salt Marsh	MKTLLAIALTAATLTIGTATMAPISGIALAGGGGPDKWCGGAMCPRRPLEVNHCR
Ga0307419_102643701	3300031537	Salt Marsh	MKTLLAIALTAATLTIGTATVAPISGTALAGGGGPDKWCGGAICPRRQAPLEVHHCR
Ga0307380_101352401	3300031539	Soil	MKTSLAIMLAVAALTIGTATVAPISSTAVAGDDRPYKWCGAAACAPGQTKPAPASQRGL
Ga0307379_102356983	3300031565	Soil	MKTLLAIALAATTLTIGTATVAPISGTALAGGGGPDKWCGAVVCPPKPAPLGTHRGR
Ga0315532_12006972	3300031575	Salt Marsh Sediment	MKTLLAIALTAATLTIGTAIVAPISGIALAGGGGPDKWCGGAMCPRRPL
Ga0307469_101232022	3300031720	Hardwood Forest Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGCGPDKWCGATACPPNLQRLGTHRGR
Ga0307468_1013463962	3300031740	Hardwood Forest Soil	MKTLLAIALATAALTIGTATVAPISNTAVAGGGGPDKWCGAAVCPPKLQQSGMHRGE
Ga0307468_1022229321	3300031740	Hardwood Forest Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGRGPDKWCGAAACPPNLQRLGTHRGR
Ga0315288_100902933	3300031772	Sediment	MKTSLAIVLAVAALTIGTATVAPFSSTAVAGGGGPDKWCGAAVCPPKQAPSGTHVGQ
Ga0315288_108572321	3300031772	Sediment	MKTSLAIVLAAAALTIGTATVAPISSIAIAGGGGPDKWCGATVCPPKQAPSGTYLGR
Ga0214473_1001245010	3300031949	Soil	MKTLLAIALTSVLAAATLTFGAPMTPMSGTAVAGGNIGPQYWCGAAVCPPQTPKGTHRGY
Ga0214473_102594723	3300031949	Soil	MKTLLAIVLTLVLAAATLTFGAPTTPIPGTAVAGGNIGPQYWCGATVCPTPKPPWTSDRGRR
Ga0214473_115408451	3300031949	Soil	MKTLLAIVLLAAALTIGTATVAPISGTAVAGGGGPDKWCGAAVCPPKQTPLGTYRGR
Ga0326597_113948372	3300031965	Soil	MKTSLAMMLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS
Ga0326597_114934112	3300031965	Soil	MKTSLAIVLASVLAAATLTFGAPVTPMSGTAVAGGNIGPQYWCGATICPPKKTYP
Ga0315274_105087062	3300031999	Sediment	MKTSLAIVLAVAALTIGTATVAPFSSTAVAGGGGPDKWCGAAVCPPKQALSGTHVGQ
Ga0315274_109698811	3300031999	Sediment	TSLAIVLAAAALTIGTATVAPISSIAIAGGGGPDKWCGATVCPPKQAPSGTYLGR
Ga0315283_112738601	3300032164	Sediment	MNTSLAIVLAAAALTIGTATVAPISSTAIAGGGGPDKWCGAAVCPPKRAPSGIHLGR
Ga0307471_1000186151	3300032180	Hardwood Forest Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAACPPNLQR
Ga0307471_1025791681	3300032180	Hardwood Forest Soil	MKTLLAIALAAAALTIGTATVAPISSTAVASGGGPDKWCGAAVCPPKQTQSGTLRGP
Ga0214471_101130714	3300033417	Soil	MKTLLAIALTLVLAAATLTFGAPMTPMSGTAVAGGNIGPQYWCGAAVCPPQTP
Ga0247830_102662403	3300033551	Soil	SERSAAMKTSLAIVLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS
Ga0326723_0445568_65_238	3300034090	Peat Soil	MKTSLAIVLAVAALTIGTAGVAPISSTAFAGGGGPDKWCGAVVCPPKQIQSGAHGGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060439

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences