Basic Information | |
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Family ID | F060377 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 133 |
Average Sequence Length | 39 residues |
Representative Sequence | MHTFLPFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF |
Number of Associated Samples | 117 |
Number of Associated Scaffolds | 133 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 78.79 % |
% of genes near scaffold ends (potentially truncated) | 20.30 % |
% of genes from short scaffolds (< 2000 bps) | 90.98 % |
Associated GOLD sequencing projects | 113 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.41 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (99.248 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.549 % of family members) |
Environment Ontology (ENVO) | Unclassified (36.090 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (33.835 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 52.24% β-sheet: 0.00% Coil/Unstructured: 47.76% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Groundwater Sediment Soil Soil Vadose Zone Soil Grasslands Soil Grass Soil Soil Grasslands Soil Grass Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Forest Soil Soil Hardwood Forest Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Agricultural Soil Soil Arabidopsis Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Switchgrass, Maize And Mischanthus Litter Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
F62_00730250 | 2170459010 | Grass Soil | MLLSFVVVWFTQLRAREFDAATFRSFAGEAATVHGFF |
2ZMR_04037920 | 2170459016 | Switchgrass, Maize And Mischanthus Litter | LSFTFVWFMPLRARGFDAATFGSFAGEAATLHGFF |
FE1_01147220 | 2189573002 | Grass Soil | MHTFLPFVVVWFTQLPAREFDAATFRSFADEAATVRDFF |
FG2_10080440 | 2189573004 | Grass Soil | FLSFVVVGVTPLRAREFDAATFRSFDEAATVRGFF |
F14TC_1040104392 | 3300000559 | Soil | MFLPFVVVWFTQLRAREFDAATFRSFAGEAVTVHGFF* |
Ga0063356_1024098902 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MHTFLPFVVVWFTPLRAPEFDAATFRSLSDEATKVHGFF* |
Ga0066815_100978892 | 3300005164 | Soil | MHIFLPFAIVWFTPLRAREFDAATFRSFADEAATAPGFF* |
Ga0066678_106929541 | 3300005181 | Soil | MHIFLPFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF* |
Ga0066676_105642412 | 3300005186 | Soil | MHIFLPFGVVWFSQLRAREFDAATFRSFAGEAATVRGFF* |
Ga0065704_103270392 | 3300005289 | Switchgrass Rhizosphere | MHMFLSFVVVWFRQLRAREFDAVTFRSFADEAATVRGFFSHSVFR* |
Ga0070667_1010131352 | 3300005367 | Switchgrass Rhizosphere | MHIFLSFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF* |
Ga0070714_1013783881 | 3300005435 | Agricultural Soil | FHFFEVLMHPFLPFVVVWFTQLRAREFYAATFRSFADEAATKRGSF* |
Ga0066682_101350944 | 3300005450 | Soil | MHTFLPFVVVSLRRLRAGEFDAATFPSLAGEAAALRVFF* |
Ga0070662_1012571422 | 3300005457 | Corn Rhizosphere | MHTFLPFVVDWFTPLRAREFDAATFRSFADEAATAPGFF* |
Ga0066697_106477012 | 3300005540 | Soil | MFLPFVVVWFTQLRAREFEAATFRSFAGEAATLRGFF* |
Ga0066661_102728242 | 3300005554 | Soil | MFLPFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF* |
Ga0066692_104888652 | 3300005555 | Soil | MFLPFVVVWFTQLRAREFDAATFRRFAGEAATVRGFF* |
Ga0066693_100449833 | 3300005566 | Soil | MHTFLPFVAVWFTQLRGGEFDAATFRSFAGEATTVRGFF* |
Ga0066705_100232871 | 3300005569 | Soil | MHTFLPFVAGWFTQLRGGEFDAATFRSFAGEATTVRGFF* |
Ga0066903_1031009792 | 3300005764 | Tropical Forest Soil | MHTFLPFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF* |
Ga0068860_1019193892 | 3300005843 | Switchgrass Rhizosphere | MHIFLPFAIVWFTPLRAREFDAATFRSFVDEAATAPGFF* |
Ga0068860_1023223972 | 3300005843 | Switchgrass Rhizosphere | KVLMHTFLSFVVVWFTPLRAREFYAATFRSFDEAATVRGFF* |
Ga0066652_1007889602 | 3300006046 | Soil | MFLPFVVVWFTQLRAREFDAATLRSFAGEAATVRGFF* |
Ga0070715_105968961 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MHTFLSFVVVWFTPLRAREFDAATFRSFDEAATVPGFF* |
Ga0066660_109287932 | 3300006800 | Soil | MHMFLPFVVVWFTQLRAREFEAATFRSFAGEAATLRGFF* |
Ga0068865_1009316992 | 3300006881 | Miscanthus Rhizosphere | MHTFLPFVVIWFTQLRAREFDAATFRSFADEAATLRGFF* |
Ga0099791_100139741 | 3300007255 | Vadose Zone Soil | MFLPFVVFWFTQLRAREFDAVIFRSFVGEAATVRGFF* |
Ga0099793_100951973 | 3300007258 | Vadose Zone Soil | MFLPFVVVSFTQLRARESDAATFRSFAGEPTTVRGFF* |
Ga0066710_1020210072 | 3300009012 | Grasslands Soil | MHTFLPFVVVWFTPLRAREFDAATFRSFADEAATVRGFF |
Ga0099827_102919172 | 3300009090 | Vadose Zone Soil | MFLPFVVVWFTQLRAREFDAATFRSFAGEAMTVRGFF* |
Ga0066709_1003576743 | 3300009137 | Grasslands Soil | MHTFLPFVVVWFTPLRAREFDAATFRSFAGEAATVRGFF* |
Ga0105242_105983611 | 3300009176 | Miscanthus Rhizosphere | FLPFAIVWFTPLRAREFDAATFRSFVDEAATAPGFF* |
Ga0105237_118654931 | 3300009545 | Corn Rhizosphere | QFHFFKVLMHTFLSFVVVWVTPLSAREFYAATFRSFDEAATVRGFF* |
Ga0127503_105330702 | 3300010154 | Soil | MHTFSSFVVVCFTPLRAREFYGATFRSFDEAATVRGFF* |
Ga0134064_100495092 | 3300010325 | Grasslands Soil | MHTFLPFVVVWFTPLRAREFDAATFRSFAGEATTVRGFF* |
Ga0134063_104166531 | 3300010335 | Grasslands Soil | MFLPFVVVWFTQLRAREFDVATFRRFAGEAATVRGFF* |
Ga0134063_104270171 | 3300010335 | Grasslands Soil | TFLPFVAGWFTQLRGGEFDAATFRSFAGEATTVRGFF* |
Ga0105239_134406962 | 3300010375 | Corn Rhizosphere | MHTFLSFVVVWFTPLRAREFDAATFRSFDEAATVRGFF* |
Ga0126349_12645811 | 3300010861 | Boreal Forest Soil | VLMHMFLPFVVVSFTQLRARGSDAATFRSFAGEAATVRGFF* |
Ga0137364_103971442 | 3300012198 | Vadose Zone Soil | MHTFLPFMAVWFTQLRGGEFDAATFRSFAGEATTVRGFF* |
Ga0137381_103536542 | 3300012207 | Vadose Zone Soil | MFLPFVVVWFMQLRAREFDAATFRNFAGEAATVRGFF* |
Ga0137377_107990101 | 3300012211 | Vadose Zone Soil | MHVFLPFGVVWFSQLRAREFDAATFRSFAGEAATVRGFF* |
Ga0137370_100098551 | 3300012285 | Vadose Zone Soil | FFKVLMHTFLPFVAVWFTQLRGGEFDAATFRSFAGEATTVRGFF* |
Ga0137370_107330342 | 3300012285 | Vadose Zone Soil | MFLPFVVVWFTQLRAREFDVATFRSFAGEAATVRGFF* |
Ga0137387_102354903 | 3300012349 | Vadose Zone Soil | MFLPFVVVWFTPLRAREFDAATFRSFADEAATVRGFF* |
Ga0137366_103295692 | 3300012354 | Vadose Zone Soil | MFLPFVVVWFTQLRAREFDAATFRSFAGEAATMRGFF* |
Ga0137371_107869532 | 3300012356 | Vadose Zone Soil | MHTFLPFVVVWFTPLRAREFDAATFRNFAGEAATVRGFF* |
Ga0137384_101862042 | 3300012357 | Vadose Zone Soil | MFLPFVVVWFTQLRAREFDAATVRRFAGEAATVRGFF* |
Ga0137360_106808772 | 3300012361 | Vadose Zone Soil | MFLPFVVVWFTQLRARDFDAATFRSFSGEEATVRGFF* |
Ga0137360_113756652 | 3300012361 | Vadose Zone Soil | LHFFKVFVHIFLSFTVVWFTPVRARGFDAATFGSFAGEAATLRGFF* |
Ga0137397_100857735 | 3300012685 | Vadose Zone Soil | MHTFLSFVVVWFTPLFAREFDAATFRSFDEAATVRGFF* |
Ga0137395_107951122 | 3300012917 | Vadose Zone Soil | MFLRFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF* |
Ga0137396_101201613 | 3300012918 | Vadose Zone Soil | MHTFLPFVVVWVTPLRAREFDAATFRSFDEAATVRGFF* |
Ga0137396_105296302 | 3300012918 | Vadose Zone Soil | MFLPFVVVWFTQLRAREFDAATFRSFAGEATTVRGFF* |
Ga0137404_113416572 | 3300012929 | Vadose Zone Soil | HFFKVLMHMFLPFVVVWFTQLRAREFDAATFRSFSDEAATVRGFF* |
Ga0137407_106719712 | 3300012930 | Vadose Zone Soil | MFLPFVVVWFTQLRAREFDAATFRSFSDEAATVRGFF* |
Ga0162652_1000197581 | 3300012941 | Soil | MSLPFVVVWVTQLRAREFDAATFRSFAGEAATVRGFF* |
Ga0164298_101420393 | 3300012955 | Soil | MHTFLSFVVVWFTPLRAHEFDAATFRSFDEAATVPGFF* |
Ga0164299_101609423 | 3300012958 | Soil | SSFVVVCFTPLRAREFYGATFRSFDEAATVRGFF* |
Ga0164299_103265604 | 3300012958 | Soil | MHTFLSFVVVWFTPLRAREFDAATFRSFADEAATVSGFF* |
Ga0164302_111665761 | 3300012961 | Soil | KVLLHIFLPFVVVWFTPLRAREFDAAPFRSFADEAATAPGFF* |
Ga0134077_104959402 | 3300012972 | Grasslands Soil | HTFLPFVAVWSTQLRGGEFDAATFRSFAGEAATVRGFF* |
Ga0164309_107870542 | 3300012984 | Soil | MHTFLSFVVVWFTPLRAREFDAATFRSFDEAATVAGFF* |
Ga0164304_115315042 | 3300012986 | Soil | FFKVLMHTFLSFVVVWFTPLRAREFDAATFRSFDEAATVPGFF* |
Ga0164307_112245312 | 3300012987 | Soil | MHPFLPFVVVWFTQLRAREFDAAIFRSFADEAATVRGFF* |
Ga0164306_101241223 | 3300012988 | Soil | MHTFLSFVVVWFTPLRAREFDAATFRSFADEAATVRGFF* |
Ga0164305_102321462 | 3300012989 | Soil | MHPFLPFVVVWFTQLRARELDAATFRSFADEAATVRGFF* |
Ga0132258_131477922 | 3300015371 | Arabidopsis Rhizosphere | MHIFLSFVVVWFTQLCAREFDAATFRSFAGEAATVRGFF* |
Ga0132256_1009171273 | 3300015372 | Arabidopsis Rhizosphere | MHIFLPFAIVWFTPLRAREFDAATFRGFADEAATAPGFF* |
Ga0132256_1032361662 | 3300015372 | Arabidopsis Rhizosphere | MHILLPFAIVWFMQLRAREFDAATFRSFAAVAATAPGFF* |
Ga0132257_1010939371 | 3300015373 | Arabidopsis Rhizosphere | MHRFLPFVVVWFTPLRAREFDAATFPSFAEAATVRGFF* |
Ga0132257_1014254411 | 3300015373 | Arabidopsis Rhizosphere | QFHFFKVLMHIFLSFVVVWFTQLRAREFNAATFRSFAGEAATVRGFF* |
Ga0134074_13341792 | 3300017657 | Grasslands Soil | MHTFLPFVVVSLRRLRAGEFDAATFPSLAGEAATLRVFF |
Ga0184610_10277692 | 3300017997 | Groundwater Sediment | MFLPFVVVGFTQLRARESDAATFRSFAGEAATVRGFF |
Ga0184604_102497452 | 3300018000 | Groundwater Sediment | MFLPFVVVSFTQLRAREFDAATFRSFAGEAATVRGFF |
Ga0184604_102896212 | 3300018000 | Groundwater Sediment | MHTFLPFVVVWFTPLRAREFGAATFRNFAGEAATVRGFF |
Ga0184605_102786952 | 3300018027 | Groundwater Sediment | MFLPFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF |
Ga0184608_104617552 | 3300018028 | Groundwater Sediment | MFLPFVVVRFTQLRVREFDAATFRSFAGEAATVRGFF |
Ga0184623_100860532 | 3300018056 | Groundwater Sediment | MFLPFVVVWFMQLHAREFDAATFRSFAGEAATVRGFF |
Ga0184617_10547503 | 3300018066 | Groundwater Sediment | MFLPFVVVSFTQLRAREFDAATFRSFAGEAAMVRTFF |
Ga0184617_10671622 | 3300018066 | Groundwater Sediment | MHTFLPFVVVWFTPLRAREFDAATFRSLSDEATKVHGFF |
Ga0184611_10889972 | 3300018067 | Groundwater Sediment | MSLPFVVVWLTQLRAREFDAATFRSFAGEAATVRGFF |
Ga0184618_102615512 | 3300018071 | Groundwater Sediment | MHIFLPFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF |
Ga0184624_100640162 | 3300018073 | Groundwater Sediment | MSLPFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF |
Ga0184624_101354922 | 3300018073 | Groundwater Sediment | MHIFLPFAIVWFTPLRAREFDAATFRSFADEAATAPGFF |
Ga0184632_100498033 | 3300018075 | Groundwater Sediment | MFLTFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF |
Ga0184609_100531122 | 3300018076 | Groundwater Sediment | MFLPFVVVWFMQLHAREFDAATFRSFSGEAATVRGFF |
Ga0066667_122878742 | 3300018433 | Grasslands Soil | MFLPFVVVWFTPLRAREFDAATFRSFADEAATVRGFF |
Ga0137408_10033104 | 3300019789 | Vadose Zone Soil | MFLPFVVVWFTQLRAREFDAATFRSFSDEAATVRGFF |
Ga0193756_10036203 | 3300019866 | Soil | MHIFLSFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF |
Ga0193701_10331291 | 3300019875 | Soil | VLMHIFLPFAIVWFTPLRVREFDAATFRSFSDEAATAPGFF |
Ga0193703_10011273 | 3300019876 | Soil | MHIFLPFAIVWFTPLRVREFDAATFRSFSDEAATAPGFF |
Ga0193723_10477412 | 3300019879 | Soil | MHIFLPFAIVWFTQLPAREFGAATFRSFADEGAMVRGFF |
Ga0193725_10768893 | 3300019883 | Soil | MHAFLPFVVVWFTQLRAREFDAATFRSFADEAATVRGFF |
Ga0193747_11273702 | 3300019885 | Soil | MHTFLSFVVVWFTPLRAREFDAATFRSFDEPATVCGFF |
Ga0193727_10288042 | 3300019886 | Soil | MHTFLSFVVVWFTPLRAREFDAATFRSFDEAATVRGFF |
Ga0193693_10269321 | 3300019996 | Soil | FKVLMHTFLPFVVVWVTPLRAREFDAATFRSFDEAATVRGFF |
Ga0193710_10097032 | 3300019998 | Soil | MFLPFVVVWFTQLRARESDAATFRSFAGEAATVRGFF |
Ga0193692_10871742 | 3300020000 | Soil | MHTFLSFVVVWFTPLCAREFDAATFRSFDEAATVRGFF |
Ga0193696_11019393 | 3300020016 | Soil | VLMHMFLPFVVVWFMQLRAREFDAATFRSFAGEAATVRGFF |
Ga0193724_10639232 | 3300020062 | Soil | FLSFVVVWFTQLRAREFDAATFRSFAGEAATVRGFF |
Ga0210381_100843663 | 3300021078 | Groundwater Sediment | MFLPFVAVGFTQLRARESDAATFRSFAGEAATVRGFF |
Ga0210382_100242992 | 3300021080 | Groundwater Sediment | MFLPFVVVWFTQLRAREFDAATFRSFADEAATVRGFF |
Ga0179596_104447892 | 3300021086 | Vadose Zone Soil | MFLPFVVVSFTQLRARESDAATFRSFAGEPATVRGFF |
Ga0193709_10489741 | 3300021411 | Soil | MFLPFVVVWFTQLRAESDAATFRSFAGEAPTVRGFF |
Ga0193694_10510901 | 3300021415 | Soil | MFLPFVVVWFTQLRAREFDAATLQSFAGDAPTVRGFF |
Ga0222624_11064242 | 3300021951 | Groundwater Sediment | VLMHMFLPFVAVGFTQLRARESDAATFRSFAGEAATVRGFF |
Ga0207693_114010392 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | FFKVLHTLLPFVVVRFTQLRAREFDAATFRSFADEAATVRGFF |
Ga0207662_102253763 | 3300025918 | Switchgrass Rhizosphere | MHTFLSFVVVWFTPLRVREFYAATFRSFDEAATVRGFF |
Ga0207701_101475845 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MHTFLSFVVVWFTPLRAREFYAATFRSFDEAATVRGFF |
Ga0207701_102784992 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MHTFLPFVVDWFTPLRAREFDAATFRSFADEAATAPGFF |
Ga0207701_106326212 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MHIFLPFAIVWFTPLRAREFDAATFRSFVDEAATAPGFF |
Ga0209468_11625662 | 3300026306 | Soil | MHTFLPFVAVWFTQLRGGEFDAATFRSFAGEATTVRGFF |
Ga0209470_12988482 | 3300026324 | Soil | MHIFLPFGVVWFSQLRAREFDAATFRSFAGEAATVRGFF |
Ga0209375_10840352 | 3300026329 | Soil | MHTFLPFVVVSLRRLRAGEFDAATFPSLAGEAAALRVFF |
Ga0257146_10038494 | 3300026374 | Soil | MHTFLPFVVVWVTPLRAREFYAATFRSFDEAATVRGFF |
Ga0179587_109537812 | 3300026557 | Vadose Zone Soil | MFLPFVVVSFTQLRARESDAATFRSFAGEPTTVRGFF |
Ga0207981_10932042 | 3300027560 | Soil | MHIFLPFAIVWFTPLRAREFDAATFRGFADEAATAPGFF |
Ga0307309_101342811 | 3300028714 | Soil | HFFKVLMHIFLPFAIVWFTPLRVREFDAATFRSFSDEAATAPGFF |
Ga0307281_100444073 | 3300028803 | Soil | MHIFLPFAIVWFMQLRAREFDAATFRSFADVAATAPGFF |
Ga0075402_115108771 | 3300030777 | Soil | MHTFLSFVVVWFTPLRAREFDAATFRSFAEAATVRGFF |
Ga0075377_117150132 | 3300030844 | Soil | MHIFLPFVVVCFTQLRAREFDAVTFRSFAGEAATVRGFF |
Ga0138296_15297743 | 3300030923 | Soil | FFFTFVWFTSLRAHGFDAATFGSFAGEAATLRRFF |
Ga0138298_10383872 | 3300031015 | Soil | VHVFLSFAFVWFTSLRAQGFDAATFGSFAGEAATLRRFF |
Ga0138298_16132492 | 3300031015 | Soil | VHIFLSFTFVWFMPVRARGFRAATFGSFAGEAVTLRGFF |
Ga0170834_1013267222 | 3300031057 | Forest Soil | MHTFLPFVVVWFTQLCALEFDAANFQSFADEAATVRGLF |
Ga0170824_1138357303 | 3300031231 | Forest Soil | MHTFLPFVVVWFTQLPAREFDAATFRSFADEAATVRDLF |
Ga0170824_1179771656 | 3300031231 | Forest Soil | MHTFLLFVVVCFTQLRAREFDAATFRSFADEAATVRGFF |
Ga0170824_1266121331 | 3300031231 | Forest Soil | MFLTFVVVWFTQLRARESDAATFRSFAGEAATVRGFF |
Ga0170818_1013446701 | 3300031474 | Forest Soil | VLLHRFLPSVAVWFTQLRARESDAATFRSFAGEAATVRGFF |
Ga0306917_104321592 | 3300031719 | Soil | VHVFLSFTFVWFTPLRARGFDAATFRGLAGEAATLRGFF |
Ga0307469_109510941 | 3300031720 | Hardwood Forest Soil | MHTFLPFVVVWFTPLRAREFDAVTFRSFADEAATVRG |
Ga0310810_102173142 | 3300033412 | Soil | MHAFLFFVVVWFTPLRAREFDAATFRSFADEAATVRGFF |
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