Metagenome / Metatranscriptome Family F060237

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F060237
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	68 residues
Representative Sequence	MITWTLSGHIIFALATGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHRPGGNGR
Number of Associated Samples	110
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.17 %
% of genes near scaffold ends (potentially truncated)	30.08 %
% of genes from short scaffolds (< 2000 bps)	90.98 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.406 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.812 % of family members)
Environment Ontology (ENVO)	Unclassified (27.820 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.398 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.55% β-sheet: 0.00% Coil/Unstructured: 49.45%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
a.121.1.1: Tetracyclin repressor-like, C-terminal domain	d2gfna2	2gfn	0.7121
a.121.1.1: Tetracyclin repressor-like, C-terminal domain	d1sgma2	1sgm	0.67656
f.22.1.1: ABC transporter involved in vitamin B12 uptake, BtuC	d2qi9a_	2qi9	0.67355
a.182.1.1: GatB/YqeY domain	d1ng6a_	1ng6	0.67067
a.211.1.1: HD domain	d2cqza_	2cqz	0.66651

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF02899	Phage_int_SAM_1	13.53
PF00300	His_Phos_1	3.76
PF13610	DDE_Tnp_IS240	2.26
PF00293	NUDIX	1.50
PF05443	ROS_MUCR	1.50
PF00011	HSP20	1.50
PF01425	Amidase	0.75
PF08734	GYD	0.75
PF00999	Na_H_Exchanger	0.75
PF13358	DDE_3	0.75
PF02534	T4SS-DNA_transf	0.75
PF04909	Amidohydro_2	0.75
PF10137	TIR-like	0.75
PF05940	NnrS	0.75
PF00005	ABC_tran	0.75
PF00589	Phage_integrase	0.75
PF02661	Fic	0.75
PF13518	HTH_28	0.75
PF00230	MIP	0.75
PF02371	Transposase_20	0.75
PF14319	Zn_Tnp_IS91	0.75
PF00118	Cpn60_TCP1	0.75
PF13379	NMT1_2	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	13.53
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	13.53
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.50
COG4957	Predicted transcriptional regulator	Transcription [K]	1.50
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.75
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.75
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.75
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.75
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.75
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.75
COG3213	Nitric oxide response protein NnrS	Signal transduction mechanisms [T]	0.75
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.75
COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	Intracellular trafficking, secretion, and vesicular transport [U]	0.75
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.75
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.75
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.13 %
Unclassified	root	N/A	37.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.26 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	19.55 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.26 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.50 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.50 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.75 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.75 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	19.55 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.75 %
Geminicoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae	0.75 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.75 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.75 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.75 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.75 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.75 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.75 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.75 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.75 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	19.55 %
Salinihabitans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Salinihabitans	0.75 %
Geminicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	0.75 %
Klebsiella/Raoultella group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group	0.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.75 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.75 %
unclassified Candidatus Accumulibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter	0.75 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.75 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.75 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.75 %
Desulfuromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae	0.75 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	19.55 %
Geminicoccus roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	0.75 %
Salinihabitans flavidus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Salinihabitans → Salinihabitans flavidus	0.75 %
Candidatus Accumulibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter → Candidatus Accumulibacter sp.	0.75 %
unclassified Roseomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas	0.75 %
unclassified Methylosinus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus	0.75 %
unclassified Cupriavidus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus	0.75 %
Klebsiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella	0.75 %
Desulfuromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas	0.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.75 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.75 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	19.55 %
Roseomonas sp. JC162	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. JC162	0.75 %
Cupriavidus sp. BIS7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. BIS7	0.75 %
Methylosinus sp. Ce-a6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. Ce-a6	0.75 %
Desulfuromonas acetexigens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → Desulfuromonas acetexigens	0.75 %
Klebsiella pneumoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	0.75 %
Geminicoccus roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	0.75 %
Salinihabitans flavidus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Salinihabitans → Salinihabitans flavidus	0.75 %
Candidatus Accumulibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter → Candidatus Accumulibacter sp.	0.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.75 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.75 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.75 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100175391	All Organisms → cellular organisms → Bacteria	2028	Open in IMG/M
3300003219\|JGI26341J46601_10001962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6756	Open in IMG/M
3300003219\|JGI26341J46601_10041662	All Organisms → cellular organisms → Bacteria → Proteobacteria	1462	Open in IMG/M
3300003505\|JGIcombinedJ51221_10145626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	955	Open in IMG/M
3300004080\|Ga0062385_10829794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300004082\|Ga0062384_100098848	Not Available	1557	Open in IMG/M
3300004092\|Ga0062389_102791259	Not Available	652	Open in IMG/M
3300004092\|Ga0062389_104196053	Not Available	542	Open in IMG/M
3300005178\|Ga0066688_10997988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	510	Open in IMG/M
3300005187\|Ga0066675_11447375	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300005435\|Ga0070714_100117869	All Organisms → cellular organisms → Bacteria	2358	Open in IMG/M
3300005436\|Ga0070713_101653706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300005440\|Ga0070705_101513175	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300005454\|Ga0066687_10974970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	506	Open in IMG/M
3300005471\|Ga0070698_100885938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300005569\|Ga0066705_10496966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	764	Open in IMG/M
3300005602\|Ga0070762_11037192	Not Available	563	Open in IMG/M
3300005764\|Ga0066903_100528424	All Organisms → cellular organisms → Bacteria → Proteobacteria	2012	Open in IMG/M
3300005921\|Ga0070766_10614689	Not Available	731	Open in IMG/M
3300005921\|Ga0070766_10794184	All Organisms → cellular organisms → Bacteria → Proteobacteria	645	Open in IMG/M
3300006028\|Ga0070717_11796302	Not Available	554	Open in IMG/M
3300006174\|Ga0075014_100633397	All Organisms → cellular organisms → Bacteria → Proteobacteria	615	Open in IMG/M
3300006175\|Ga0070712_101618273	Not Available	567	Open in IMG/M
3300006176\|Ga0070765_100151662	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300006176\|Ga0070765_101372428	Not Available	666	Open in IMG/M
3300006176\|Ga0070765_102309282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300006638\|Ga0075522_10060662	All Organisms → cellular organisms → Bacteria → Proteobacteria	2152	Open in IMG/M
3300006893\|Ga0073928_10297148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1214	Open in IMG/M
3300009088\|Ga0099830_10433784	All Organisms → cellular organisms → Bacteria → Proteobacteria	1066	Open in IMG/M
3300009089\|Ga0099828_11385166	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300009090\|Ga0099827_10683011	Not Available	887	Open in IMG/M
3300009090\|Ga0099827_10933304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	752	Open in IMG/M
3300009090\|Ga0099827_11957895	All Organisms → cellular organisms → Bacteria → Proteobacteria	510	Open in IMG/M
3300009143\|Ga0099792_10870461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	594	Open in IMG/M
3300010343\|Ga0074044_10467497	Not Available	825	Open in IMG/M
3300011120\|Ga0150983_11119736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300011120\|Ga0150983_13098489	Not Available	534	Open in IMG/M
3300011269\|Ga0137392_10174407	Not Available	1748	Open in IMG/M
3300011269\|Ga0137392_10599061	Not Available	914	Open in IMG/M
3300011269\|Ga0137392_11351364	Not Available	572	Open in IMG/M
3300011270\|Ga0137391_10208958	All Organisms → cellular organisms → Bacteria → Proteobacteria	1696	Open in IMG/M
3300011270\|Ga0137391_10608968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. BIS7	915	Open in IMG/M
3300011270\|Ga0137391_10840965	Not Available	754	Open in IMG/M
3300011271\|Ga0137393_10624664	Not Available	924	Open in IMG/M
3300011998\|Ga0120114_1050442	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300012010\|Ga0120118_1166055	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300012198\|Ga0137364_10391469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1039	Open in IMG/M
3300012206\|Ga0137380_10786320	Not Available	822	Open in IMG/M
3300012209\|Ga0137379_10152217	Not Available	2222	Open in IMG/M
3300012209\|Ga0137379_11177373	Not Available	673	Open in IMG/M
3300012210\|Ga0137378_10784064	Not Available	865	Open in IMG/M
3300012285\|Ga0137370_10181040	Not Available	1230	Open in IMG/M
3300012362\|Ga0137361_10338020	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300012363\|Ga0137390_11290175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	676	Open in IMG/M
3300012582\|Ga0137358_10784627	Not Available	634	Open in IMG/M
3300012683\|Ga0137398_10601553	Not Available	761	Open in IMG/M
3300012923\|Ga0137359_11745837	Not Available	509	Open in IMG/M
3300012924\|Ga0137413_10675641	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300014056\|Ga0120125_1027271	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217	Open in IMG/M
3300014058\|Ga0120149_1024561	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300015242\|Ga0137412_11236796	Not Available	523	Open in IMG/M
3300015245\|Ga0137409_11141571	Not Available	619	Open in IMG/M
3300016422\|Ga0182039_10315503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. JC162	1301	Open in IMG/M
3300018042\|Ga0187871_10421281	All Organisms → cellular organisms → Bacteria → Proteobacteria	738	Open in IMG/M
3300019184\|Ga0184590_131415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	640	Open in IMG/M
3300019888\|Ga0193751_1126087	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → Desulfuromonas acetexigens	947	Open in IMG/M
3300019888\|Ga0193751_1129134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	932	Open in IMG/M
3300020581\|Ga0210399_10456653	All Organisms → cellular organisms → Bacteria → Proteobacteria	1064	Open in IMG/M
3300020581\|Ga0210399_10602028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	909	Open in IMG/M
3300020582\|Ga0210395_10244119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1349	Open in IMG/M
3300020583\|Ga0210401_10435450	All Organisms → cellular organisms → Bacteria → Proteobacteria	1174	Open in IMG/M
3300020583\|Ga0210401_10575478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. Ce-a6	988	Open in IMG/M
3300021168\|Ga0210406_11393202	Not Available	501	Open in IMG/M
3300021170\|Ga0210400_10917516	Not Available	715	Open in IMG/M
3300021170\|Ga0210400_10969324	Not Available	692	Open in IMG/M
3300021170\|Ga0210400_11111923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300021171\|Ga0210405_11283506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300021178\|Ga0210408_10850354	Not Available	712	Open in IMG/M
3300021180\|Ga0210396_10162265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2004	Open in IMG/M
3300021403\|Ga0210397_11103654	Not Available	616	Open in IMG/M
3300021420\|Ga0210394_11133397	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300021432\|Ga0210384_11328780	Not Available	624	Open in IMG/M
3300021474\|Ga0210390_10464215	Not Available	1068	Open in IMG/M
3300021560\|Ga0126371_12454903	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300022529\|Ga0242668_1074269	Not Available	650	Open in IMG/M
3300022533\|Ga0242662_10062390	Not Available	990	Open in IMG/M
3300022717\|Ga0242661_1086240	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300022724\|Ga0242665_10374337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300022726\|Ga0242654_10308791	Not Available	584	Open in IMG/M
3300023536\|Ga0247552_103030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300023539\|Ga0247555_102073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300025934\|Ga0207686_11473862	Not Available	561	Open in IMG/M
3300026322\|Ga0209687_1247399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter → Candidatus Accumulibacter sp.	553	Open in IMG/M
3300026356\|Ga0257150_1073680	Not Available	518	Open in IMG/M
3300026359\|Ga0257163_1064987	Not Available	586	Open in IMG/M
3300026490\|Ga0257153_1034285	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300026984\|Ga0208732_1023978	Not Available	557	Open in IMG/M
3300027174\|Ga0207948_1000119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5462	Open in IMG/M
3300027591\|Ga0209733_1069501	Not Available	914	Open in IMG/M
3300027701\|Ga0209447_10123651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300027737\|Ga0209038_10083896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	958	Open in IMG/M
3300027767\|Ga0209655_10088310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1031	Open in IMG/M
3300027768\|Ga0209772_10000445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10377	Open in IMG/M
3300027812\|Ga0209656_10003448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10219	Open in IMG/M
3300027812\|Ga0209656_10257550	Not Available	822	Open in IMG/M
3300027829\|Ga0209773_10468421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300027855\|Ga0209693_10162558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1102	Open in IMG/M
3300027855\|Ga0209693_10205677	All Organisms → cellular organisms → Bacteria → Proteobacteria	968	Open in IMG/M
3300027882\|Ga0209590_10361652	All Organisms → cellular organisms → Bacteria → Proteobacteria	936	Open in IMG/M
3300027889\|Ga0209380_10087820	Not Available	1789	Open in IMG/M
3300027889\|Ga0209380_10264476	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300027903\|Ga0209488_10185299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1570	Open in IMG/M
3300028906\|Ga0308309_10183691	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300029636\|Ga0222749_10076658	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300030740\|Ga0265460_11829455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300030741\|Ga0265459_13063691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300031057\|Ga0170834_104770131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	929	Open in IMG/M
3300031057\|Ga0170834_112561700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Salinihabitans → Salinihabitans flavidus	515	Open in IMG/M
3300031545\|Ga0318541_10060107	Not Available	1973	Open in IMG/M
3300031549\|Ga0318571_10433503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300031564\|Ga0318573_10266732	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300031708\|Ga0310686_107004230	Not Available	601	Open in IMG/M
3300031708\|Ga0310686_107035690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1002	Open in IMG/M
3300031879\|Ga0306919_11083693	Not Available	611	Open in IMG/M
3300031910\|Ga0306923_10004694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13130	Open in IMG/M
3300031965\|Ga0326597_10457972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	1401	Open in IMG/M
3300032028\|Ga0316052_105678	All Organisms → cellular organisms → Bacteria → Proteobacteria	719	Open in IMG/M
3300032068\|Ga0318553_10533090	Not Available	615	Open in IMG/M
3300032091\|Ga0318577_10335877	Not Available	722	Open in IMG/M
3300032180\|Ga0307471_101025909	Not Available	992	Open in IMG/M
3300032515\|Ga0348332_12049878	All Organisms → cellular organisms → Bacteria → Proteobacteria	1232	Open in IMG/M
3300033290\|Ga0318519_10096874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1581	Open in IMG/M
3300034680\|Ga0370541_002283	Not Available	1525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.25%
Host-Associated	Host-Associated	0.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.22%
Aquatic	Environmental → Aquatic	12.03%
Plants	Host-Associated → Plants	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.47%
Freshwater	Environmental → Aquatic → Freshwater	10.53%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.75%
Sediment	Environmental → Aquatic → Sediment	0.75%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.92%
Loam	Environmental → Terrestrial → Soil → Loam	18.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.53%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.29%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.51%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.76%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	9.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.76%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.75%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.75%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.75%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.75%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019184	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023536	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023539	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032028	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1001753913	3300002245	Forest Soil	MTWPLLSGHIVFALGTGIASGATAAHYPDVISAPCAAILGTLVLYPLMLVIWWRLHRSP*
JGI26341J46601_100019622	3300003219	Bog Forest Soil	MRTVRRSLRRAWQMITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAIFGTLVVYPVMVALWWRLHRPGGRG*
JGI26341J46601_100416624	3300003219	Bog Forest Soil	LCERGAGEHMRTVRRSLRRAWQMITWTLSGHIIFALATGIVCGIAAVRYPEVISPPYAAILGALVVYPVMVAMWWRLHRPGGSGR*
JGIcombinedJ51221_101456261	3300003505	Forest Soil	MITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWR
Ga0062385_108297942	3300004080	Bog Forest Soil	MMTWPLSSHIVFALATGLVCGIAASGYPDVIAPPYAAIVGTLMIYPLLLLIWLRVNRSGGSGR*
Ga0062384_1000988482	3300004082	Bog Forest Soil	MTWPLSSHIVFALATGLVCGIAASGYPDVIAPPYAAIVGTLMIYPLLLLIWLRVNRSGGSGR*
Ga0062389_1027912592	3300004092	Bog Forest Soil	MITWTLSGHIIFALATGIACGIVAGRYPEVISPPYAAILGTLVIYPVMVAMWWRLHRPGGNGR*
Ga0062389_1041960532	3300004092	Bog Forest Soil	MKTRARRRSLRRVWRVLTWPLSGHVALALGTGLALGIADSHYPTVISPPYAAILGTLVVYPAMVAMWWRLHRPRGRGR*
Ga0066688_109979881	3300005178	Soil	MTWPLSGQVALALAMGLACGIAAASRYPDVITPPYAAILGTLILYTVMVT
Ga0066675_114473752	3300005187	Soil	MRTVRRSLRRAWQMITWPLSGHIIFALAAGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAIWWRLHRPGGSGR*
Ga0070714_1001178691	3300005435	Agricultural Soil	MITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR*
Ga0070713_1016537061	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR*
Ga0070705_1015131752	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	WTLSGHIIFALATGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHRSGGSGR
Ga0066687_109749702	3300005454	Soil	MRTVRRSLRRAWQMITWPLSGHIIFALAAGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAIWWRLHRPGGGGR*
Ga0070698_1008859381	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MITWPLSGHIIFAVATGIASGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHRSRGAADDE*
Ga0066705_104969662	3300005569	Soil	MITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAILGTLVVYPVMVAIWWRLHRPGGSGR*
Ga0070762_110371921	3300005602	Soil	MSWPLPGHIVFALATGLTSGITAAHYPDVISTVHAAILGTLVLYPLMVLIWWRLHRPEGKR*
Ga0066903_1005284242	3300005764	Tropical Forest Soil	MTWPLSGHIVFALAMGLACGTAVARNPDVIALAPPYAAILGTLVIYPAMAGMWWRLHRPGRNDR*
Ga0070766_106146892	3300005921	Soil	MKMSTRRFLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRGR*
Ga0070766_107941843	3300005921	Soil	HIVFALATGLTSGITAAHYPDVISTVHAAILGTLVLYPLMVLIWWRLHRPEGKR*
Ga0070717_117963022	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AMKTSTRRSLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRDR*
Ga0075014_1006333971	3300006174	Watersheds	MRNATRHSLQRAWRMMTWPLSGHIALALATGLACGLAAAGYPNVVPPPYAAIVGTLALYPAMVAMWRHLHGPGGNGR*
Ga0070712_1016182732	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVRQSLRRAWQMITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR*
Ga0070765_1001516624	3300006176	Soil	MKTSTRRSLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRDR*
Ga0070765_1013724282	3300006176	Soil	MKAATRRSLRRVWRTMTWPLLSGHIVFALGTGIASGATAAHYPDVISAPCAAILGTLVLYPLMLVIWWRLHRSP*
Ga0070765_1023092822	3300006176	Soil	MRTARRSLRRAWQMITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAIFGTLVVYPVMVAMWWRLHRPGGKGR*
Ga0075522_100606623	3300006638	Arctic Peat Soil	MGTRTRRRSLRRVWRVMTWPLSGHIALALGTGLAFGIADAHYPTVISPPYAAILGTLVVYPAMVAMWWRVNQPRKPGR*
Ga0073928_102971482	3300006893	Iron-Sulfur Acid Spring	MRSARRSLRRAWQMITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAIFGTLVVYPVMVAMWWRLHRPGGKGR*
Ga0099830_104337842	3300009088	Vadose Zone Soil	MTWPLSGHLALALGTGLACGIAAAHYPNVISSPYAAILGTFVVYPAIVATWWYLNPPGGR
Ga0099828_113851662	3300009089	Vadose Zone Soil	MTWPLSGHIALALATGLACGFAASRYVEVITPPFAAIFGTLIVYPAMVAAWWRVNSPGRHGR*
Ga0099827_106830112	3300009090	Vadose Zone Soil	MLSWPLTGQVALALATGLSCGIAAAHYPVVISPPYAAILGTLVAYPALVAMWWRLHRPRKRGR*
Ga0099827_109333042	3300009090	Vadose Zone Soil	MRTMRRSLRRAWRVMTWPLSGHIALALGTGLAFGITDAHYPTVISPPYAAMLGTLIVYPAMVAMWWRLHRPGGRGR*
Ga0099827_119578952	3300009090	Vadose Zone Soil	MTWPLSGHVVLALATGLACGTVAARYPAVIEPPYAAILGALILYPLMVAAWWRIHSPGGRQR*
Ga0099792_108704611	3300009143	Vadose Zone Soil	RRTTRRSLQRVRQALTWPLSGHIVFALATGLVCGIAAAHYPDVISPPYAAIIGALAVYPLMVAMWWRLNRPGGNDR*
Ga0074044_104674973	3300010343	Bog Forest Soil	ITWPLSSHIIFALATGIACGIVGRRYPEVISPPYAAIFGTLVVYPVMVAMWWRLHRPGGSDR*
Ga0150983_111197361	3300011120	Forest Soil	MITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRL
Ga0150983_130984891	3300011120	Forest Soil	MITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAIFGTLVVYPVMVAMWWRLHRPGGKGR*
Ga0137392_101744072	3300011269	Vadose Zone Soil	MTWPLSGQIALALATGLACGGAASRYPDVLAPPYAAILGTLVIYPAMVAAWWRLNSPGGRQR*
Ga0137392_105990612	3300011269	Vadose Zone Soil	MTWPLSGHVALALGTGLACGSAAARYPDIIAPPYAAIIAAVVAYPAIVATWWYFTPPGASGR*
Ga0137392_113513641	3300011269	Vadose Zone Soil	MTWPLSGHIALALGSGLAFGIADAHYPMLISPPYAAILGTLVVYPVMVAIWWRINRPRKRGRR*
Ga0137391_102089583	3300011270	Vadose Zone Soil	MTWPLSGHIVFALGTGIASGATAAHYADVIWPPSAAILGTLVLYPLMVVIWWRLHRSP*
Ga0137391_106089682	3300011270	Vadose Zone Soil	AWRVMTWPLSGHLALALGTGLACGIAAAHYPNVISSPYAAILGTFVVYPAIVATWWYLNPPGGR*
Ga0137391_108409651	3300011270	Vadose Zone Soil	MTWPLSSHLALALATGLACGITASHYPDVVSPSYAALLGTFVVYPLMLAIWCYLHRPGGNSR*
Ga0137393_106246642	3300011271	Vadose Zone Soil	MTWPLSSHLALALATGLACGVTASHYPDVVSPSYAALLGTFVVYPLMLAIWCYLHRPGGNSR*
Ga0120114_10504422	3300011998	Permafrost	MTWPLSGHVALALATGLACGIAASRYPDVIEPPYAAILGTLILYPVMVAMWWHLNPPGGRGR*
Ga0120118_11660552	3300012010	Permafrost	MTWPLSSHIALALATGLACGTAAARYPDVIEPPYAAILGSLVMYPVMVAVWWHLNPPGGRGG*
Ga0137364_103914694	3300012198	Vadose Zone Soil	MRTVRRSLRRAWQMITWTLSGHIIFALATGITGGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR*
Ga0137380_107863201	3300012206	Vadose Zone Soil	VLTWPLSGDVALAFATGLASGIAASRYPGVIEPPYAAILGTLILYPVMVAAWWRIHSPGGRRR*
Ga0137379_101522172	3300012209	Vadose Zone Soil	MRTRARRRSLRRAWRILTWPLSGHVALAMATGLACGIVDAHYPMVISPPYAAILGTLVLYPAMVAMWWRLNRPRKRGR*
Ga0137379_111773731	3300012209	Vadose Zone Soil	MTWPLSGHIALALGSGLAFGIADAHYPMLISPPYAAILGTLVVYPVMVAIWWRLNRPRKRGRR*
Ga0137378_107840641	3300012210	Vadose Zone Soil	MLSWPLTGQVALALATGLSCGIAAAHYPVVISPPYAAILGTLVAYPALVAM
Ga0137370_101810401	3300012285	Vadose Zone Soil	MITWTLSGHIIFALATGITGGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR*
Ga0137361_103380202	3300012362	Vadose Zone Soil	MITWPLSGHIIFALATGIACGIVTARCPEVISPPYAAILGTLVVYPVMVAMWWRLHRPGGSGR*
Ga0137390_112901751	3300012363	Vadose Zone Soil	MLPWPLPSHVALALATGLACGIADAHYPVVISPPYAAILGTLVVYPAMVAMWWRLNRPRKRRR*
Ga0137358_107846272	3300012582	Vadose Zone Soil	MRRTTRRSLQRVRRALTWPLSGHIVFALATGLVCGIAAAHYPDVISPPYAAIIGALAVYPLMVAMWWRLNRPGGNDR*
Ga0137398_106015532	3300012683	Vadose Zone Soil	VTWPLSSHIAFALATGLACGVVAARYPGEIAPPYAAIAGTLGIYPALVAMWHRLHPPEGDGR*
Ga0137359_117458371	3300012923	Vadose Zone Soil	MITWTLSGHIIFALATGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHRSGGSGR*
Ga0137413_106756412	3300012924	Vadose Zone Soil	MKTSTRRSLRRAWRVMTWPLSAHLMFALGTGLASGIAAAHYPTVIAAPYAAIIGTFAVYPVMVAIWWRLHQLGGRGR*
Ga0120125_10272712	3300014056	Permafrost	MRTKARRRSLRRAWRVMTWPLSGHPALALATGLTCGIAASRYPDVIAVPYAATLGTLVIYPVMVAAWWHLNPPGGRGR*
Ga0120149_10245613	3300014058	Permafrost	MTWPLSGHLALALATGLTCGIAASRYPDVIAAPYAATLGTLVIYPVMVAALWDLNPPG
Ga0137412_112367962	3300015242	Vadose Zone Soil	MFALGTGLASGIAAAHYPTVIAAPYAAIIGTFAVYPVMVAIWWRLHQLGGRGR*
Ga0137409_111415712	3300015245	Vadose Zone Soil	MKTSTRRSLRRAWRVMTWPLSAHLIFALGTGLASGITAAHYPTVIAAPYAAIIGTLAAYPVMVAIWWRLNQLGGRGR*
Ga0182039_103155032	3300016422	Soil	MRTVRRSLRRAWQMITWPLSGHIIFALGTGIARGIVAARYLEVISPPYAAILATLVVYPVMVAMWWRLHRPGGSDR
Ga0187871_104212811	3300018042	Peatland	MRTTTRRSLRRAWRMMTWPLSGHVGFALATGLVCGIAAAQYPAVISAPYAAILGTLFVYPVMVLIWWRLNRTRGS
Ga0184590_1314152	3300019184	Soil	MTWPLSGHIALALATGLACGRAAAGYPNMVSPPYAAIVGTLALYPAMVAMWRHLHGPGGNDR
Ga0193751_11260872	3300019888	Soil	MTWPLSGHLTLALGTGLACGIAAAHYPNVISSPYAAILGALVVYPAMVATWWYLNPPGGR
Ga0193751_11291341	3300019888	Soil	MTWPLSGHVALALATGLACGIAASRYPDEIEPPYAAILGTLILYPVMVAAWWHLNPPGGR
Ga0210399_104566532	3300020581	Soil	MRRRTRRSLQRVRRALTWPLSGHIVFALATGLVCGIAAAHYPDVISPPYAAIIGALAVYPLMVAMWWRLNRPGGNDR
Ga0210399_106020284	3300020581	Soil	MRTARRSLRRAWQMITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAIFGTLVVYPVMVAMWWRLHRPGGKGR
Ga0210395_102441192	3300020582	Soil	MRRRRRALRRAWRAMTWPLSAHIVFALATGLACGLAVAHYEKGIPPPYAAALGMLVVYPLVVAAWRGFHRLRGVD
Ga0210401_104354502	3300020583	Soil	MRTVRRSLRRAWQMITWTLSGHIIFALATGITCGIVAARYPEVVSPPYAAILGTLVVYPVMVAMWWRLHRPGGSGR
Ga0210401_105754782	3300020583	Soil	MKMSTRRFLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRDR
Ga0210406_113932021	3300021168	Soil	LIWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRGR
Ga0210400_109175162	3300021170	Soil	MKTSTRRSLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRGR
Ga0210400_109693242	3300021170	Soil	MRTVRQSLRRAWQMITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR
Ga0210400_111119233	3300021170	Soil	MITWTLSGHIIFALATGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLH
Ga0210405_112835061	3300021171	Soil	LLADVALALATGLACGIATAHYPIVISPAYAAILSVLVLYPATVAMRWRLNRPRKRGR
Ga0210408_108503541	3300021178	Soil	EGQGRLMRRTTRRSLQRVRQALTWPLSGHIVFALATGLVCGIAAAHYPDVISPPCAAIIGALAVYPLMVAMWWRLNRPGGNDR
Ga0210396_101622653	3300021180	Soil	MRRTTRRSLQRVRQALTWPLSGHIVFALATGLVCGIAAAHYPDVISPRYAAIIGALAVYPLMVAMWWRLNRPGGNDR
Ga0210397_111036541	3300021403	Soil	EHMRTVRQSLRRAWQMITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR
Ga0210394_111333973	3300021420	Soil	MKMSTRRFLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRD
Ga0210384_113287801	3300021432	Soil	MKAATRRSLRRVWRTMTWPLLSGHIVFALGTGIASGATAAHYPDVISAPCAAILGTLVLYPLMLVIWWRLHRSP
Ga0210390_104642152	3300021474	Soil	MRRTTRRSLQRVRQALTWPLSGHIVFALATGLVCGIAAAHYPDVISPRYAAIIGALAVYPLMVAKVA
Ga0126371_124549032	3300021560	Tropical Forest Soil	AWRTMTWPLSGHIVLALATGLACGIAAARYPDVISPPYAALVGTLVVYPAMVGMWWRLHRPGGNDR
Ga0242668_10742691	3300022529	Soil	MITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWHLHRPGGSGR
Ga0242662_100623902	3300022533	Soil	MITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAILGTFVVYPVMVAMWWRLHRPGGSGR
Ga0242661_10862402	3300022717	Soil	MTWPLSGHLVFALGTGLASGATAAHYPDVISPPYAAILGTLVLYPLMLTIGWRLHHVKGK
Ga0242665_103743371	3300022724	Soil	MITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHRPGGNGR
Ga0242654_103087911	3300022726	Soil	RGAGEHMRTVRQSLRRAWQMITWTLSGHIIFALGTGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR
Ga0247552_1030302	3300023536	Soil	MTWPLSGHIALALATGLACGRAAAGYPNMVSPPYAAIVGTLALYPAMVATWRHLHGPGGN
Ga0247555_1020732	3300023539	Soil	MMTWPLSGHIALALATGLACGRAAAGYPNMVSPPYAAIVGTLALYPAMVATWRHLHGP
Ga0207686_114738622	3300025934	Miscanthus Rhizosphere	GAGEHMRTVRRSLRRAWQMITWTLSGHIIFALATGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHRSGGSGR
Ga0209687_12473991	3300026322	Soil	WQMITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR
Ga0257150_10736802	3300026356	Soil	MRTVRRSLRRAWQMITWTLSGHIIFALATGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHRPGGNGR
Ga0257163_10649871	3300026359	Soil	MRMTTRRSLWRVWRIVTWPLSSHIAFALATGLACGVVAARYPGEIAPPYAAIAGTLGIYPALVAMWHRLHPPEGDGR
Ga0257153_10342851	3300026490	Soil	MITWPLSSHIIFALATGIACGIVGARYPEVISPPCAAIFGTLVVYRVMVAMWWRLHRPGGKGR
Ga0208732_10239782	3300026984	Forest Soil	RGRGEHMRTARRSLRRAWQMITWPLSSHIIFALATGIACGIVAARYPEVISPPYAAMLGTLVVYPVMVAMWWRLHRPGGSGR
Ga0207948_10001194	3300027174	Forest Soil	MITWTLSGHIIFALATGITCGIVAARYPEVISPPYAAMLGTLVVYPVVVAMWWRLHRPGGAADDA
Ga0209733_10695013	3300027591	Forest Soil	MKAATRRSLRRVWRAMSWPLSSHLVFALATGLASGATAAHYSDVISAPYAAILGTLVLYPLMLMIWWRLHRPQEKR
Ga0209447_101236512	3300027701	Bog Forest Soil	MMTWPLSSHIVFALATGLVCGIAASGYPDVIAPPYAAIVGTLMIYPLLLLIWLRVNRSGGSGR
Ga0209038_100838963	3300027737	Bog Forest Soil	MRTVRRSLRRAWQMITWPLSSHIIFALATGIACGIVAARYPEVISPLDAAILGTLVVYPVMVAMWWRLHRPGGSDR
Ga0209655_100883101	3300027767	Bog Forest Soil	MITWPLSSHIIFALATGIACGIVAARYPEVISPLDAAILGTLVVYPVMVAMWWRLHRPGGSDR
Ga0209772_100004458	3300027768	Bog Forest Soil	MRRALRRAWRMMTWPLSSHIVFALATGLVCGIAASGYPDVIAPPYAAIVGTLMIYPLLLLIWLRVNRSGGSGR
Ga0209656_100034487	3300027812	Bog Forest Soil	MRTVRRSLRRAWQMITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAIFGTLVVYPVMVALWWRLHRPGGRG
Ga0209656_102575502	3300027812	Bog Forest Soil	MITWTLSGHIIFALATGIVCGIAAVRYPEVISPPYAAILGALVVYPVMVAMWWRLHRPGGSGR
Ga0209773_104684211	3300027829	Bog Forest Soil	IFALATGIACGIVAARYPEVISPLDAAILGTLVVYPVMVAMWWRLHRPGGSDR
Ga0209693_101625583	3300027855	Soil	MRTARRSLRRAWQMITWPLSSHIIFALATGIACGIVGARYPEVISPPYAAIFGTLVVYPVMVAMWWRLHRPGGSGR
Ga0209693_102056772	3300027855	Soil	MMTWPLSGHLVFALGTGLASGATAAHYPDVISPPYAAILGTLVLYPLMLTIWWRLHHVKG
Ga0209590_103616522	3300027882	Vadose Zone Soil	MRTMRRSLRRAWRVMTWPLSGHIALALGTGLAFGITDAHYPTVISPPYAAMLGTLIVYPAMVAMWWRLHRPGGHGR
Ga0209380_100878203	3300027889	Soil	MKAATRRSLRRLWRAMSWPLPGHIVFALATGLTSGITAAHYPDVISTVHAAILGTLVLYPLMVLIWWRLHRPEGKR
Ga0209380_102644761	3300027889	Soil	MKMSTRRFLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHL
Ga0209488_101852992	3300027903	Vadose Zone Soil	MITWTLSGHIIFALATGIACGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHRPGGNGR
Ga0308309_101836913	3300028906	Soil	MKTSTRRSLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRDR
Ga0222749_100766583	3300029636	Soil	MKMSTRRFLRRAWRVLTWPVSAHIMFALGTGLASGIVASRYPDVIGPPYAAILGTLIIYPVMVAAWWHLNAPRGRGR
Ga0265460_118294553	3300030740	Soil	MMTWPSSGHIALALATGLACGLAAAGYPELISPPSAALVGTLAVYPAMVGMWRRLH
Ga0265459_130636912	3300030741	Soil	MMTWPSSGHIALALATGLACGLAAAGYPELISPPSAALVGTLAVYPAMVGMWR
Ga0170834_1047701314	3300031057	Forest Soil	VADDHVALSGHIIFALATGITCGIVAARYPEVISPPYAAILGTLVVYPVMVAMWWRLHPPGGSGR
Ga0170834_1125617002	3300031057	Forest Soil	ALATGIACGIGGARYPAVISPPYAAIFGTLVVYPVMVAMWWRLHRPGGKGR
Ga0318541_100601072	3300031545	Soil	MITWPLSGHIIFALGTGIACGIVAARYLEVISPPYAAILATLVVYPVMVAMWWRLHRPGGSDR
Ga0318571_104335031	3300031549	Soil	MRTVRRSLRRAWQMITWPLSGHIIFALGTGIACGIVAARYLEVISPPYAAILATLVVYPVMVAMWWRLHRPGGSDR
Ga0318573_102667323	3300031564	Soil	WQMITWPLSGHIIFALGTGIACGIVAARYLEVISPPYAAILATLVVYPVMVAMWWRLHRPGGSDR
Ga0310686_1070042302	3300031708	Soil	WRMMTWPLSGHIALALATGLACGLAATGYPNVVSPPYAAIVGTLALYPAMVAMWRHLHGPGGNGR
Ga0310686_1070356903	3300031708	Soil	MMTWPLSGHIALALATGLACGLAAAGYPNVVSPPSAAIVGTLALYLAMVAMWRHLH
Ga0306919_110836932	3300031879	Soil	MRRTTRRSLRRAWRAMTWPLSGHIVFALATGLACGIAAARYPDIISPPYAALVGTLVVYPAMVGMWWRLHRPRGNDR
Ga0306923_1000469411	3300031910	Soil	MRTVRRSLRRAWQMITWPLSGHIIFALGTGIACGIVAARYLEVISPTYAAILATLVVYPVMVAMWWRLHRPGGSDR
Ga0326597_104579722	3300031965	Soil	MTWPLSGHVALALATGLAGGIAAARYPTAISPPYAAILGALVVYPAMVAMWWRLHRPRRRGR
Ga0316052_1056782	3300032028	Soil	MTWPLSGHIALALATGLACGRAAAGYPNMVSPPYAAIVGTLALYPAMVATWRHLHGPGGNDR
Ga0318553_105330902	3300032068	Soil	YLCERGAGEHMRTVRRSLRRAWQMITWPLSGHIIFALGTGIACGIVAARYLEVISPPYAAILATLVVYPVMVAMWWRLHRPGGSDR
Ga0318577_103358771	3300032091	Soil	AGEHMRTVRRSLRRAWQMITWPLSGHIIFALGTGIACGIVAARYLEVISPPYAAILATLVVYPVMVAMWWRLHRPGGSDR
Ga0307471_1010259091	3300032180	Hardwood Forest Soil	MTWPFPGHLVFALGAGFACGIVAANYPAVISPQYAAILGTFVLYPVMVVMWWRLHRPGNGRG
Ga0348332_120498782	3300032515	Plant Litter	MRNTTRHSLQRAWRMMTWPLSGHIALALATGLACGLAAAGYPNVVSPPSAAIVGTLALYLAMVAMWRHLH
Ga0318519_100968741	3300033290	Soil	GRRAGRHALPRIRGHYLRERGAGEHMRTVRRSLRRAWQMITWPLSGHIIFALGTGIACGIVAARYLEVISPPYAAILATLVVYPVMVAMWWRLHRPGGSDR
Ga0370541_002283_1181_1372	3300034680	Soil	MITWPLSGHIIFALATGITCGLVAARYPEVISPPYAAILGTLVVYPVMVAIWWRLHPPGGIGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060237

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences