Metagenome / Metatranscriptome Family F059980

Overview

Basic Information

• Family ID: F059980
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 133
• Average Sequence Length: 42 residues
• Representative Sequence: MEEACKMGFSGGFEQGKPETALPELRRFIPVNTKRVNPQNKF
• Number of Associated Samples: 95
• Number of Associated Scaffolds: 133

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 5.34 %
• % of genes near scaffold ends (potentially truncated): 33.08 %
• % of genes from short scaffolds (< 2000 bps): 80.45 %
• Associated GOLD sequencing projects: 88
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (96.241 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands (12.030 % of family members)
• Environment Ontology (ENVO): Unclassified (32.331 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (28.571 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 20.00%
  β-sheet: 0.00%
  Coil/Unstructured: 80.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF02321	OEP	51.13
PF00156	Pribosyltran	6.02
PF01556	DnaJ_C	4.51
PF01242	PTPS	4.51
PF00005	ABC_tran	3.76
PF07690	MFS_1	1.50
PF00072	Response_reg	0.75
PF13180	PDZ_2	0.75
PF00291	PALP	0.75
PF08239	SH3_3	0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	102.26
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	4.51
COG0720	6-pyruvoyl-tetrahydropterin synthase	Coenzyme transport and metabolism [H]	4.51
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.75
COG5598	Trimethylamine:corrinoid methyltransferase	Coenzyme transport and metabolism [H]	0.75

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.24 %
Unclassified	root	N/A	3.76 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.24 %
Unclassified	root	N/A	3.76 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.24 %
Unclassified	root	N/A	3.76 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	83.46 %
Unclassified	root	N/A	3.76 %

Level 5

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	83.46 %
Unclassified	root	N/A	3.76 %

Level 6

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	83.46 %
Unclassified	root	N/A	3.76 %

Level 7

Name	Rank	Taxonomy	Distribution
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	15.04 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.75 %
Unclassified	root	N/A	3.76 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	9.02 %

Level 8

Name	Rank	Taxonomy	Distribution
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	14.29 %
Olavius algarvensis Delta 1 endosymbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	8.27 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	0.75 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.75 %
Unclassified	root	N/A	3.76 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	0.75 %

Level 9

Name	Rank	Taxonomy	Distribution
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.75 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	5.26 %
Olavius algarvensis Delta 1 endosymbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	8.27 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	0.75 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.75 %
Unclassified	root	N/A	3.76 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	1.50 %

Level 10

Name	Rank	Taxonomy	Distribution
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1.50 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.75 %
Desulfosarcina variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	3.01 %
Olavius algarvensis Delta 1 endosymbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	8.27 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	0.75 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.75 %
Unclassified	root	N/A	3.76 %
unclassified Desulfosarcina	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → unclassified Desulfosarcina	0.75 %

Level 11

Name	Rank	Taxonomy	Distribution
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1.50 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.75 %
Desulfosarcina sp. BuS5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → unclassified Desulfosarcina → Desulfosarcina sp. BuS5	0.75 %
Desulfosarcina variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	3.01 %
Olavius algarvensis Delta 1 endosymbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	8.27 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	0.75 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.75 %
Unclassified	root	N/A	3.76 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300024062|Ga0255039_10248898	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	751
(restricted) 3300024519|Ga0255046_10008416	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	3334
(restricted) 3300024529|Ga0255044_10455128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	539
3300000242|TDF_OR_ARG05_123mDRAFT_1031594	All Organisms → cellular organisms → Bacteria	1158
3300001270|BBAY91_10073016	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	834
3300001687|WOR8_10000248	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	55809
3300001746|JGI24672J20091_10001203	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → unclassified Desulfosarcina → Desulfosarcina sp. BuS5	5836
3300003801|Ga0056138_1000747	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	6478
3300003989|Ga0055473_10029538	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1521
3300004000|Ga0055458_10173065	Not Available	642

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.75%
Environmental	Environmental	92.48%
Host-Associated	Host-Associated	6.77%

Class

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	0.75%
Annelida	Host-Associated → Annelida	6.02%
Aquatic	Environmental → Aquatic	84.21%
Lab Enrichment	Engineered → Lab Enrichment	0.75%
Terrestrial	Environmental → Terrestrial	8.27%

Category

Habitat	Taxonomy	Distribution
Defined Media	Engineered → Lab Enrichment → Defined Media	0.75%
Digestive System	Host-Associated → Annelida → Digestive System	6.02%
Freshwater	Environmental → Aquatic → Freshwater	8.27%
Green Algae	Host-Associated → Algae → Green Algae	0.75%
Marine	Environmental → Aquatic → Marine	69.17%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.26%
Sediment	Environmental → Aquatic → Sediment	4.51%
Soil	Environmental → Terrestrial → Soil	8.27%

Type

Habitat	Taxonomy	Distribution
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.75%
Coastal	Environmental → Aquatic → Marine → Coastal	27.07%
Digestive Tube	Host-Associated → Annelida → Digestive System → Digestive Tube	4.51%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.75%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	2.26%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.75%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.52%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.26%
Oceanic	Environmental → Aquatic → Marine → Oceanic	6.02%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	8.27%
Sediment	Environmental → Aquatic → Marine → Sediment	6.02%
Strait	Environmental → Aquatic → Marine → Strait	2.26%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.51%
Unclassified	Host-Associated → Annelida → Digestive System → Unclassified	1.50%
Wetlands	Environmental → Aquatic → Marine → Wetlands	15.04%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.27%

Subtype

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.76%
Extracellular Symbionts	Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts	4.51%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	3.76%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	24.81%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	6.02%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	3.01%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	2.26%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	0.75%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.75%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	12.03%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	8.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.27%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	6.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.51%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.50%
Unclassified	Host-Associated → Annelida → Digestive System → Unclassified → Unclassified	1.50%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.75%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.75%

Habitat

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.01%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.75%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.75%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	2.26%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	1.50%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	9.77%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.26%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine	0.75%
Marine Gutless Worms Symbiont	Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont	4.51%
Marine Gutless Worms Symbiont	Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont	1.50%
Marine Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent	0.75%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	6.77%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	6.02%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	1.50%
Marine Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment	0.75%
Marine Sediment	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Marine Sediment	0.75%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	12.03%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.26%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.75%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.26%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	1.50%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	8.27%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	6.02%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	2.26%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Sediment	0.75%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	0.75%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.75%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.75%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.27%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.75%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	6.02%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000242	Marine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m	Environmental
3300001270	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY91	Host-Associated
3300001687	Deep Marine Sediments WOR-3-8_10	Environmental
3300001746	Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 2	Host-Associated
3300003801	Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.1	Host-Associated
3300003989	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2	Environmental
3300004000	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2	Environmental
3300004001	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D1	Environmental
3300004008	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordB_D2	Environmental
3300004023	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
TDF_OR_ARG05_123mDRAFT_10315942	3300000242	Marine	MEEACSMGFSGGFEQGKPETALPELIRFIPGNVRRVNPQNRFCCG*
BBAY91_100730162	3300001270	Macroalgal Surface	MEEACSMGFSGGFEQGKPDTALPELKNVIPVKVKWVNPQNTIYRI*
WOR8_1000024820	3300001687	Marine Sediment	MEEAGLMGFSGGFGQGKPVTALPELECVISIIKERVNP*
JGI24672J20091_100012034	3300001746	Marine Gutless Worms Symbiont	MEEAFIMGFSGGFEQGKPATALPELINSISIIIKRVNP*
Ga0056138_10007476	3300003801	Marine Gutless Worms Symbiont	MEEAFLMGFSGGFEQGKPATALPDLIDSISINIQRVNPKSAD*
Ga0055473_100295382	3300003989	Natural And Restored Wetlands	MGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQITFYRG*
Ga0055458_101730652	3300004000	Natural And Restored Wetlands	MGFSGGFEQGKPATALPELDWFIPGNILQVNPKSAAITGRA*
Ga0055450_100314502	3300004001	Natural And Restored Wetlands	MEEACFMGFSGGFEQGKPETALPELGRFIPVNAGRVNPQK*
Ga0055446_101720812	3300004008	Natural And Restored Wetlands	MEEAGSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFYCG*
Ga0055441_102309791	3300004023	Natural And Restored Wetlands	ACTMGFSGGFEQGKPETALPELRRFIPVNMKWVNPQNKFCYG*
Ga0055443_100636382	3300004026	Natural And Restored Wetlands	MEEACTMGFSGGFEQGKPETALPELRRFIPVNMKWVNPQNKFCYG*
Ga0055442_100922002	3300004029	Natural And Restored Wetlands	MEEACTMGFSGGFEQGKPETALPELRRFIPANMKRVNPQNKF*
Ga0065201_16025662	3300004459	Sediment	KKSPHLMEEACKMGLSGGFEQGKPETALPELKRLIPVNTKRVNPQNKF*
Ga0070728_103773842	3300005588	Marine Sediment	MEEACSMGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQNTFYRS*
Ga0070728_107360492	3300005588	Marine Sediment	MEEACKMGFSGGFEQGKPETALPELRRFIPVNMKWVNPQNKFCYG*
Ga0070729_105165602	3300005589	Marine Sediment	MEEAFLMGFSGGLEQGKPATALPELVNSISINKEGVNP*
Ga0070727_100535483	3300005590	Marine Sediment	MEEACKMGFSGGFEQGKPETALPELKRSIPVNMKTVNPQNKFCCR*
Ga0074477_13498411	3300005826	Sediment (Intertidal)	MEEACSMGFSGGFEQGKPETALPELKKFIPVNMKKVNPLNKLCCG*
Ga0070725_103239441	3300005920	Marine Sediment	KSLHLMEEACSMGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQNTFYRS*
Ga0056128_10122083	3300005967	Marine Gutless Worms Symbiont	MEEAFLMGFSGGFEQGKPETALPELINSISTIIERVNP*
Ga0099972_102708561	3300006467	Marine	SLHLMEEACSMGFSGGFEQGKPETALPELRRFIAVNVKRVNPQNKF*
Ga0099972_104401221	3300006467	Marine	FDIKSLHLMEEACSMGFSGGFEQGKPETALPELRRFIPVNGKWVNPQNKFCCV*
Ga0099972_106374841	3300006467	Marine	NNKKSPHLMEEACKMGFSGGFEQGKPETALPELRRFIPVNMPRVNPQNNF*
Ga0099972_121887673	3300006467	Marine	MEEACSMGFSGGFEQGKPETALPELRRFIPVNVKWVNPQNRFCCS*
Ga0099972_123526922	3300006467	Marine	MEEAFLMGFSGGFEQGKPAAALPELINFISINIEGVNP*
Ga0102541_11124771	3300007102	Marine Sediment	MEEAGSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFCCG*
Ga0102954_11500261	3300007778	Water	MEEACSMGFSGGFEQGKPETALPELKKFIPVNMKKVNPQNKICGR*
Ga0114885_1081349	3300008409	Sediment	MEEAFLMGFSGGFEQGKPATALPELINFISINIERVNP*
Ga0115362_1000388362	3300008416	Sediment	MEEAFLMGFSGGFEQGKPATALPELINSISINIEGVNP*
Ga0102957_10990701	3300009027	Pond Water	SLHLMEEACFTGFSGGFEQGKPETALAELCRFIPVISGRVNPQK*
Ga0102956_13741051	3300009033	Soil	MEEACKMGLSGGFEQGKPETALPELKRFIPVNTKR
Ga0102958_10809552	3300009035	Soil	MEEACKMGLSGGFEQGKPETALPELKRFIPVNTKRVNPQNKF*
Ga0102958_12549601	3300009035	Soil	NIWKSLHLMEEACSMGFSGGFEQGKPEAALPELRRFIAVNVKRVNPQNKF*
Ga0102962_11149831	3300009060	Soil	SLHLMEEAGSMGFSGGFEQGNPETALPELIRFIPGNVKRVNSQNRFCCG*
Ga0102962_12018682	3300009060	Soil	MEEACSMGFSGGFEQGKPETALPELIRFIPGNVKR
Ga0102959_10704182	3300009138	Soil	SMGFSGGFEQGKPGTALPELKNVIPVKVKGVNPQNTFYRS*
Ga0102959_11135542	3300009138	Soil	MEEACSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFCCG*
Ga0102959_12344002	3300009138	Soil	SMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFYCG*
Ga0102961_11693282	3300009145	Soil	MEEACSMGFSGGFEQGKPETALPELKKFIPVNMKKVNPQNKFCGR*
Ga0117908_10040999	3300009314	Marine	MEEACLMGFSGGSEQGKLETALLELKRYIPRKPVRVNLKEKVTL*
Ga0118657_100563776	3300009506	Mangrove Sediment	MEEAFFMGFSGGFEQGKPATALPELIICISTKMEGVNP*
Ga0118657_110317601	3300009506	Mangrove Sediment	MEEAFFMGFSGGFEQGKPATALPEVDCFIPGNILQVNP*
Ga0123573_100187666	3300009509	Mangrove Sediment	MEEAVLMGFSGGFEQGKPATALPELMELISTNRNGVNP*
Ga0123573_104528151	3300009509	Mangrove Sediment	MEEAFFMGFGGGFEQGKPATALPELVNFISIKIARVN
Ga0136651_104683972	3300010330	Marine Hydrothermal Vent	MEEAFIMGFSGGFEQGKPATALPGLSNFIPINIKRVNP*
Ga0118731_1001348541	3300010392	Marine	ACSMGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQNTFYRS*
Ga0118731_1022007942	3300010392	Marine	MEEACSMGFSGGFEQGKPETALPELRSFIPVNVKRVNPQN*
Ga0118731_1035157341	3300010392	Marine	KSPHLMEEACSMGFSGGFEQGKPETALPELRRFIPVNVKWVNPQNRFCCS*
Ga0118731_1070216642	3300010392	Marine	MEEACKMGLSGGFEQGKPETALPELRRFIPVNMKTVNPQNKFCCR*
Ga0118731_1074993792	3300010392	Marine	MEEACSMGFSGGFEQGKPETALPELRRFIAVNVKRVNPQNKF*
Ga0118731_1078968562	3300010392	Marine	EEACKMGFSGGFEQGKPETALPELRRFIPVNMPRVNPQNNF*
Ga0118731_1096453941	3300010392	Marine	MEEACKMGFSGGFEQGKPETALPELRRFIPANMKRVNPQNNF*
Ga0118731_1098670612	3300010392	Marine	MEEACKMGFSGGFEQGKPETALPELKRFIPVNMPRVNPQNKF*
Ga0136851_112557111	3300010413	Mangrove Sediment	MEEALLMGFSGGFEQGKPATALPELDWFIPGNILQVNP*
Ga0118733_1008142881	3300010430	Marine Sediment	KPYIMGFSGGFEQGKPATALPELINFISINLERVNS*
Ga0118733_1031239831	3300010430	Marine Sediment	HLMEEACTMGFSGGFEQGKPETALPELRRFIPVNMSRVNPQNNF*
Ga0118733_1038604891	3300010430	Marine Sediment	MGFSGGFEQGKPETALPELKRFIPVNMKRVNPQNKF*
Ga0151668_10021151	3300011262	Marine	EACTMGFSGGFEQGKPETALPELKRFIPVNMKRVNPQNKFCCG*
Ga0151668_10021203	3300011262	Marine	EACSMGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQNTFYRS*
Ga0164320_102028302	3300013098	Marine Sediment	MEEAFIKGFSGGFEQGKPAMALPELSNFIPINIKRVNP*
Ga0164313_103960752	3300013101	Marine Sediment	MEEACSMGFSGGFEQGKPETALPELRIPISIIIKSVN*
Ga0180435_109267921	3300017992	Hypersaline Lake Sediment	MEEAGLMGFSGGFEQGKPDAALPELRSQIPVNAKRVNPQNRF
Ga0194021_10137432	3300019703	Sediment	MEEAGSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFYCG
Ga0193967_10156021	3300019709	Sediment	MGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFCCG
Ga0193972_10317252	3300019717	Sediment	MEEAGSMGFSGGFEQGKPETALPELIRFIPGNVKRVNSQNRFCCG
Ga0193977_10120081	3300019719	Sediment	MGFSGGFEQGKPETALPELKRLIPVNTKRVNPQNKF
Ga0194004_10433482	3300019723	Sediment	MEEACSMGFSGGFEQGKPETALPELIRFIPGNVKGVNPQNRFCCG
Ga0193968_10393642	3300019729	Sediment	MEEAGSMGFSGGFEQGKPETALPELIRFIPGNVKGVNPQNKF
Ga0193970_10485772	3300019734	Sediment	WNNKKSPHLMEEACKMGLSGGFEQGKPETALPELKRLIPVNTKRVNTQNKF
Ga0194020_10077202	3300019741	Sediment	MEEAGSMGFSGGFEQGKPETALPELKRLIPVNTKRVNPQNKF
Ga0193998_10686641	3300019744	Sediment	MEEAGSMGFSGGFEQGKPEAALPELRRFIAVNVKRVNPQNKF
Ga0193978_10666042	3300019747	Sediment	MEEACTMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFYCG
Ga0194018_10494951	3300019748	Sediment	MEEACSMGFSGGFEQGKPDTALPELRRFIAVNVKRVNPQNKF
Ga0210330_11074351	3300021322	Estuarine	DFDIKSLHLMEEACSIGFSGGCEQGKPETALPELRRVIPVNEKRVNPQNKFCCS
Ga0210339_11217101	3300021332	Estuarine	EACSMGFSGGFEQGKPETALPELKRFIPVNMKKVNPLNKLCCG
Ga0210365_105663132	3300021351	Estuarine	MEEAFLTGFSGGFEQGKPATALPDLINSISINIERVNPKSADYTRAVGLDCA
Ga0210365_108101653	3300021351	Estuarine	MEEACSMGFSGGFEQGKPGTALPELKRFIPVNMKKVNPQNKLCCG
Ga0224503_100979841	3300022201	Sediment	MEEAYSMGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQNTFYRS
Ga0224498_100503103	3300022202	Sediment	MEEACSMGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQNTFYRS
Ga0224499_100220801	3300022206	Sediment	MEEACSMGFSGGFEQGKPETALPELRSFIPVNVKRVNPQN
Ga0224499_101643112	3300022206	Sediment	MEEACSMGFSGGFEQGKPEAALPELRRFIAVNVKRVNPQNKF
Ga0224499_102197462	3300022206	Sediment	MEEAGSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFCCG
Ga0224502_102069442	3300022218	Sediment	MEEACKMGLSGGFEQGKPETALPELKRFIPVNMKTVNPQNKFCCR
Ga0224513_102479512	3300022220	Sediment	MEEAYSMGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQNTF
Ga0224513_104605382	3300022220	Sediment	MEEACKMGLSGGFEQGKPETALPELKRFIPVNTKRVNPQNKF
(restricted) Ga0255039_102488982	3300024062	Seawater	MEEAFLMGFSGGFEQGKPATALPELINFISINIERVNP
(restricted) Ga0255046_100084164	3300024519	Seawater	MEEACKMGFSGGFEQGKPETALPELKRSIPVNMKTVNPQNKFCCR
(restricted) Ga0255044_104551282	3300024529	Seawater	MEEAFIIGFSGGFEQGKPATALPELINSISIKIEWVNP
Ga0210060_10951352	3300025554	Natural And Restored Wetlands	MGFSGGFEQGKPATALPELDWFIPGNILQVNPKSAAITGRA
Ga0210141_10293052	3300025557	Natural And Restored Wetlands	MEEACSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFYCG
Ga0210110_10538422	3300025565	Natural And Restored Wetlands	MEEAFLMGFSGGFEQGKPATALPELINFISINIKRVNP
Ga0210110_10882862	3300025565	Natural And Restored Wetlands	MEEAFCMGFSGGFEQGKPATALPELINCISTNIEGVNP
Ga0210110_11127782	3300025565	Natural And Restored Wetlands	MGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQITFYRG
Ga0210111_10132394	3300025802	Natural And Restored Wetlands	MEEAFCMGFSGGFEQGKPATALPELINCISTNIEGV
Ga0209456_103362801	3300025883	Pelagic Marine	KKSPHLMEEACKMGFSGGFEQGKPETALPELRRFIPVNMKRVNPQNNF
Ga0209567_100582942	3300025895	Pelagic Marine	MEEACSMGFSGGFEQGKPETALPELRRFIPVNVKWVNLQNRFCCS
Ga0209567_103213141	3300025895	Pelagic Marine	GGFEQGKPDTALPELKNVIPVKVKGVNPQNTFYRS
Ga0210079_10624132	3300025995	Natural And Restored Wetlands	MEEACKMGFSGGFEQGKPETALPELERFIPANIKRVNPQNKF
Ga0210079_10820741	3300025995	Natural And Restored Wetlands	MEEACKMGLSGGFEQGKPETALPELKRFIPVNTKRVNPQNKFXCGWEDGIY
Ga0210124_11776031	3300026007	Natural And Restored Wetlands	MEEAXSMGFSGGFEQGKPDTALPELKNVIPVKVKGVNPQITFYRGXEA
Ga0209927_10267071	3300026106	Soil	CKMGFSGGFEQGKPETALPELRRFIPVNMKWVNPQNKFCYG
Ga0209940_10482322	3300026133	Soil	HLMEEACSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFCCG
Ga0209367_100864411	3300027098	Marine Gutless Worms Symbiont	MEEAFLMGFSGGFEQGKPETALPELINSISTIIERVNP
Ga0209454_100019215	3300027118	Marine Gutless Worms Symbiont	MEEAFVMGFSGGFEQGKPETALPELINSISTIIERVNP
Ga0209791_100004941	3300027540	Marine Gutless Worms Symbiont	MEEAFLMGFSGGFEQGKPATALPDLIDSISINIQRVNPKSAD
Ga0209791_10004849	3300027540	Marine Gutless Worms Symbiont	MEEAFIMGFSGGFEQGKPATALPELINSISIIIKRVNP
Ga0209786_100001450	3300027599	Marine Gutless Worms Symbiont	MEEAFIMGFSGGFEQGKPATALPELINSISIIVERVNP
Ga0209742_100040905	3300027814	Marine Sediment	MEEAGLMGFSGGFGQGKPVTALPELECVISIIKERVNP
Ga0209536_1000559274	3300027917	Marine Sediment	MEEACKMGLSGGFEQGKPETALPELKRLIPVNTKRVNPQNKF
Ga0209536_1001662152	3300027917	Marine Sediment	MEEAVLMGFSGGFEQGKPAMALPELMELISTNRNGVNP
Ga0209536_1002728152	3300027917	Marine Sediment	MEEACSMGFSGGFEQGKPETALPELKRFIPGNVKRVNPLNRFYCG
Ga0209536_1008763011	3300027917	Marine Sediment	EEAFLMGFSGGFEQGKPATALPELTNFISINIARVNP
Ga0209536_1017330792	3300027917	Marine Sediment	MEEACSMGFSGGFEQGKPDTALPELKNVIPVKVNGVNPQITFYRS
Ga0209536_1018801992	3300027917	Marine Sediment	MEEACKMGLSGGFEQGKPETALPELRRVIPVNMNSVNSQ
Ga0265309_107014762	3300028599	Sediment	AGSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNRFCCG
Ga0272443_101860522	3300028883	Marine Sediment	MEEAFLMGFGGGFEQGKPATALPELDCFLPGNILQVNP
Ga0134606_101740782	3300029827	Marine Sediment	MEEAFFMGFSGGFEQGKPATALPELDWFIPGNNLQVNP
Ga0315556_12774271	3300031256	Salt Marsh Sediment	KPFIMGFSGGFEQGKPATALPGLDWFIAGNILEVNPKSAAISGRT
Ga0307426_10120435	3300031359	Salt Marsh	LEEAFLMGFSGGLEQGKPATALPELDWFIPGNIFQVNP
Ga0307423_10360903	3300031371	Salt Marsh	KSLHLMEEAFLMGFSGGLEQGKPATALPELDWFIPGNIFQVNP
Ga0307424_12752171	3300031511	Salt Marsh	LEEAFLMGFSGGFEQGKPATALPELDGFIPGNILQVNP
Ga0315542_12587702	3300031552	Salt Marsh Sediment	MEEAFLMGFSGGFEQGKPATALPELAGYIPGNFLQVNPYPAAGTDLT
Ga0316201_105804962	3300032136	Worm Burrow	MEEACSMGFSGGFEQGKPETALPELKRFIPVNVKWVNPQNEFCCG
Ga0316201_106158862	3300032136	Worm Burrow	MEEAFLMGFSGGFEQGKPATALPELTNFISINIARVNP
Ga0316187_110149691	3300032231	Worm Burrow	MEEACTMGFSGGFEQGKPETALPELKRFIPVNMKRVNPQNK
Ga0316191_100536762	3300032258	Worm Burrow	MEEACTMGFSGGFEQGKPETALPELRRFIPANMKRVNPQNKF
Ga0316191_108076452	3300032258	Worm Burrow	MEEACKMGFSGGFEQGKPETALPELRRFIPVNTKRVNPQNKF
Ga0316192_100295205	3300032260	Worm Burrow	MEEACSMGFSGGFEQGKPETALPELIRFIPGNVKRVNPQNEFCCG
Ga0316194_105175462	3300032262	Sediment	MEEAFLMGFSGGFEQGKPARALPELVNSISINIEGVNP
Ga0316188_105302452	3300032276	Worm Burrow	MEEACTMGFSGGFEQGKPETALPELERFIPANIKRVNPQNKF
Ga0316188_106985691	3300032276	Worm Burrow	MEEACSMGFSGGFEQGKPETALPELRRVIPVNVERVNPQNK
Ga0316193_103139492	3300033429	Sediment	MEEAFIMGFSGGFEQGKPGSALPELIKSISTNIEGVNP
Ga0373573_0202278_467_583	3300034782	Sediment	MEEASLMGFSGGFEQEKPMTALLELKALIPAKQIRVNP