Metagenome Family F059800

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059800
Family Type	Metagenome
Number of Sequences	133
Average Sequence Length	49 residues
Representative Sequence	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAEQGAAENPTTR
Number of Associated Samples	107
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.63 %
% of genes near scaffold ends (potentially truncated)	20.30 %
% of genes from short scaffolds (< 2000 bps)	65.41 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (91.729 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (24.060 % of family members)
Environment Ontology (ENVO)	Unclassified (47.368 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.429 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1JGI12668J13544_10068032 2JGI12635J15846_104887772 3JGI12635J15846_105319462 4JGI12053J15887_101160852 5JGIcombinedJ26739_1009188552 6JGI25381J37097_10061904 7JGI25381J37097_10510492 8JGI25388J43891_10090402 9Ga0066674_101050862 10Ga0066672_100051913 11Ga0066672_109015682 12Ga0066677_100111613 13Ga0066680_100405562 14Ga0066673_103307202 15Ga0066684_103546552 16Ga0066685_100033903 17Ga0066676_100615012 18Ga0066676_101326492 19Ga0066675_111944571 20Ga0066686_106251381 21Ga0066686_106727672 22Ga0066682_100033232 23Ga0066697_100047032 24Ga0066701_100516142 25Ga0066693_100014595 26Ga0066708_108788501 27Ga0066654_100020038 28Ga0070763_108956482 29Ga0066656_111069922 30Ga0066659_100037113 31Ga0066659_106043282 32Ga0066659_111710942 33Ga0099791_100728412 34Ga0099793_107182582 35Ga0099794_101187192 36Ga0099827_107076402 37Ga0066709_1000042057 38Ga0066709_1009094021 39Ga0134082_101078332 40Ga0134109_101377362 41Ga0134067_100057063 42Ga0134084_100112402 43Ga0134086_102264522 44Ga0134064_100018632 45Ga0134065_100193921 46Ga0137364_100153483 47Ga0137399_102794402 48Ga0137377_101872821 49Ga0137370_101729412 50Ga0137387_101593642 51Ga0137398_101660642 52Ga0137395_103738802 53Ga0137395_105268111 54Ga0137419_102255542 55Ga0137419_105725322 56Ga0137404_104667362 57Ga0126369_119980062 58Ga0134087_102701782 59Ga0134081_100960052 60Ga0134078_100033653 61Ga0181519_102337482 62Ga0137414_10973831 63Ga0137420_10349682 64Ga0137420_12091472 65Ga0187780_107294622 66Ga0187784_107815621 67Ga0066655_100039222 68Ga0066655_100646742 69Ga0066667_100295732 70Ga0066667_103241092 71Ga0066667_113570952 72Ga0066662_100582392 73Ga0066662_119799192 74Ga0066669_101700532 75Ga0066669_106005712 76Ga0193756_10173892 77Ga0193733_10015293 78Ga0193733_10327112 79Ga0179594_100173562 80Ga0210407_103024522 81Ga0210407_106114881 82Ga0179596_100154144 83Ga0179596_103219342 84Ga0210405_100333363 85Ga0210384_103780712 86Ga0210384_109636732 87Ga0209350_100012640 88Ga0209350_10007235 89Ga0209234_11971632 90Ga0209234_12598372 91Ga0209238_10565522 92Ga0209469_10364142 93Ga0209055_100011420 94Ga0209055_10090317 95Ga0209239_100142711 96Ga0209153_10016455 97Ga0209153_10119842 98Ga0209686_100038916 99Ga0209802_10792652 100Ga0209473_10018823 101Ga0209377_12417861 102Ga0209057_11020612 103Ga0257176_10041591 104Ga0257167_10564122 105Ga0257158_10641191 106Ga0209806_10023082 107Ga0209376_10275992 108Ga0209648_103181562 109Ga0179587_104251951 110Ga0208983_10203402 111Ga0208993_10592341 112Ga0209179_11392372 113Ga0209734_10000388 114Ga0209523_10252372 115Ga0209220_10079662 116Ga0209733_10004052 117Ga0209329_10164122 118Ga0209528_10066842 119Ga0209106_11517182 120Ga0209117_10638572 121Ga0208981_10439131 122Ga0209068_102634292 123Ga0308309_105031102 124Ga0307474_104073202 125Ga0307469_100062243 126Ga0307469_115403431 127Ga0307477_100332525 128Ga0307475_100381833 129Ga0307479_113047562 130Ga0307471_1005067702 131Ga0307471_1041521032 132Ga0307472_1000262193 133Ga0335080_116098011
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1JGI12668J13544_10068032 2JGI12635J15846_104887772 3JGI25381J37097_10061904 4Ga0066672_109015682 5Ga0066659_111710942 6Ga0181519_102337482 7Ga0187780_107294622 8Ga0187784_107815621 9Ga0209234_12598372 10Ga0209238_10565522 11Ga0209179_11392372 12Ga0307477_100332525 13Ga0335080_116098011
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1JGI12668J13544_10068032 2JGI12635J15846_104887772 3JGI25381J37097_10061904 4Ga0066672_109015682 5Ga0066659_111710942 6Ga0181519_102337482 7Ga0187780_107294622 8Ga0187784_107815621 9Ga0209234_12598372 10Ga0209238_10565522 11Ga0209179_11392372 12Ga0307477_100332525 13Ga0335080_116098011
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 85.19% β-sheet: 0.00% Coil/Unstructured: 14.81%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF04984	Phage_sheath_1	45.11
PF03734	YkuD	26.32
PF04536	TPM_phosphatase	6.77
PF12697	Abhydrolase_6	1.50
PF05378	Hydant_A_N	1.50
PF08241	Methyltransf_11	0.75
PF00118	Cpn60_TCP1	0.75
PF06980	DUF1302	0.75
PF02702	KdpD	0.75
PF03449	GreA_GreB_N	0.75

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COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG3497	Phage tail sheath protein FI	Mobilome: prophages, transposons [X]	45.11
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	26.32
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	26.32
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	3.01
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.50
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.75
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.75
COG2205	K+-sensing histidine kinase KdpD	Signal transduction mechanisms [T]	0.75

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.73 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.73 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.73 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.17 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.50 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	17.29 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	5.26 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.50 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.50 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.50 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	3.76 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.50 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.50 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	3.76 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.50 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.50 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3.76 %
Unclassified	root	N/A	8.27 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001182\|JGI12668J13544_1006803	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300001593\|JGI12635J15846_10488777	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300001593\|JGI12635J15846_10531946	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300001661\|JGI12053J15887_10116085	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300002245\|JGIcombinedJ26739_100918855	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300002557\|JGI25381J37097_1006190	All Organisms → cellular organisms → Bacteria → Proteobacteria	2105	Open in IMG/M
3300002557\|JGI25381J37097_1051049	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300002909\|JGI25388J43891_1009040	All Organisms → cellular organisms → Bacteria → Proteobacteria	1898	Open in IMG/M
3300005166\|Ga0066674_10105086	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300005167\|Ga0066672_10005191	All Organisms → cellular organisms → Bacteria → Proteobacteria	5707	Open in IMG/M

Showing 1 to 10 of 131 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.50%
Terrestrial	Environmental → Terrestrial	98.50%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.75%
Sediment	Environmental → Aquatic → Sediment	0.75%
Soil	Environmental → Terrestrial → Soil	98.50%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	15.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.75%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	39.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.03%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.52%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	24.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.29%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.75%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001182	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M

Showing 1 to 10 of 107 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12668J13544_10068032	3300001182	Forest Soil	MALSEWLQLMLAEIARKREELERARAEEAQRLTESEPARQRTK*
JGI12635J15846_104887772	3300001593	Forest Soil	LTALSEWLQLMLAEIARKREELERARAEEARRLTESEAARQRGAQGAAENPTTRDTLC*
JGI12635J15846_105319462	3300001593	Forest Soil	MAPSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAEQGAAENLTTR*
JGI12053J15887_101160852	3300001661	Forest Soil	MALSEWLQLMLAEIARKREDLERARAEAAQRLTESEAARQRAEQAAAENPTTR*
JGIcombinedJ26739_1009188552	3300002245	Forest Soil	LIALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQGAAENPTTH*
JGI25381J37097_10061904	3300002557	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARRSEPGAAENPTTR*
JGI25381J37097_10510492	3300002557	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRQREEDARQRTEPGAAENPTAR*
JGI25388J43891_10090402	3300002909	Grasslands Soil	VTALSEWLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAAREGARQRSEPGAARNPTTR*
Ga0066674_101050862	3300005166	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR*
Ga0066672_100051913	3300005167	Soil	VTALSEWLQLMLAEIARKREDVERARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0066672_109015682	3300005167	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD*
Ga0066677_100111613	3300005171	Soil	VTALSEWLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0066680_100405562	3300005174	Soil	VIAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD*
Ga0066673_103307202	3300005175	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAAQNPTTR*
Ga0066684_103546552	3300005179	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARPHSEPGAAENPTTR*
Ga0066685_100033903	3300005180	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD*
Ga0066676_100615012	3300005186	Soil	VTAMSDWLQLMLAEIARKREELEHARAEEAQRLKESEAARRHGEPGAARASD*
Ga0066676_101326492	3300005186	Soil	VAALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR*
Ga0066675_111944571	3300005187	Soil	WLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAAQNPTTR*
Ga0066686_106251381	3300005446	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARAS
Ga0066686_106727672	3300005446	Soil	VAALSEWLQVMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR*
Ga0066682_100033232	3300005450	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD*
Ga0066697_100047032	3300005540	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD*
Ga0066701_100516142	3300005552	Soil	VTAMSDWLQLMLAEIARKRDELERARAEEAQRLEESEAARRHGEPGAARASD*
Ga0066693_100014595	3300005566	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAVRRHGERGAARASD*
Ga0066708_108788501	3300005576	Soil	WLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0066654_100020038	3300005587	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRYGEPGAARASD*
Ga0070763_108956482	3300005610	Soil	LTALSEWLQLMLAEIARKREDLQRARAEEAQRLTESDAARQRAEQGAAENPTTR*
Ga0066656_111069922	3300006034	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRYGEPGAARASD*
Ga0066659_100037113	3300006797	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQLGEPGAARNPTTR*
Ga0066659_106043282	3300006797	Soil	VCRVTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEATRRHGEPGAARASD*
Ga0066659_111710942	3300006797	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEA
Ga0099791_100728412	3300007255	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAVRQRAE*
Ga0099793_107182582	3300007258	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAQ*
Ga0099794_101187192	3300007265	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAE*
Ga0099827_107076402	3300009090	Vadose Zone Soil	LTALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEPGAAEILTTR*
Ga0066709_1000042057	3300009137	Grasslands Soil	LTVTALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR*
Ga0066709_1009094021	3300009137	Grasslands Soil	VCAVTALSEWLQLMLAEIARKREDLERARAEEAQRLTEEGARQRSEPGAAQNPTTR*
Ga0134082_101078332	3300010303	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0134109_101377362	3300010320	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGAQQRSEPGAAQNPTTR*
Ga0134067_100057063	3300010321	Grasslands Soil	VCAVTALSEWLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0134084_100112402	3300010322	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARPRSEPGAAENPTTR*
Ga0134086_102264522	3300010323	Grasslands Soil	MLAEIARKREELERARAEEARRLRESEAALRHGEPGAARASD*
Ga0134064_100018632	3300010325	Grasslands Soil	VCAVTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAAQNPTTR*
Ga0134065_100193921	3300010326	Grasslands Soil	VCAVTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARPHSEPGAAENPTTR*
Ga0137364_100153483	3300012198	Vadose Zone Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAAARRAGTARASD*
Ga0137399_102794402	3300012203	Vadose Zone Soil	LTALSEWLQLMLAEIVRKREDLERARAEEAQRLRESEAARQRAEQGAAENLTTR*
Ga0137377_101872821	3300012211	Vadose Zone Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRAGSARASD*
Ga0137370_101729412	3300012285	Vadose Zone Soil	LTVTALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQGAAENPTTR*
Ga0137387_101593642	3300012349	Vadose Zone Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAVRRHGEPGAARASD*
Ga0137398_101660642	3300012683	Vadose Zone Soil	MSDWLQLMLTEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD*
Ga0137395_103738802	3300012917	Vadose Zone Soil	ALTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAE*
Ga0137395_105268111	3300012917	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAA
Ga0137419_102255542	3300012925	Vadose Zone Soil	LTALSEWLQLMLAEIARKREDLERARAEEVQRLTESEATRQRAEPGAAENLTTR*
Ga0137419_105725322	3300012925	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAD*
Ga0137404_104667362	3300012929	Vadose Zone Soil	LALTALSEWLQLMLAEIVRKREDLERARAEEAQRLRESEAARQRAD*
Ga0126369_119980062	3300012971	Tropical Forest Soil	LTALSEWLQLMLAEIARKREEREHARAEEARRRSEHEA
Ga0134087_102701782	3300012977	Grasslands Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAVRRHGERGAARASD*
Ga0134081_100960052	3300014150	Grasslands Soil	WLQLMLAEIARKREDLERARAEEAQRLREEGARPHSEPGAAENPTTR*
Ga0134078_100033653	3300014157	Grasslands Soil	VTALSEWLQLMLAEIARKREDLESARAEEAQRLREEGARQRSEPGAAQNPTTR*
Ga0181519_102337482	3300014658	Bog	VTALSPWLQLMLAEIARKQEELQQARAEEAQRTQEAAAPRAVPPVRSARR*
Ga0137414_10973831	3300015051	Vadose Zone Soil	LSEWLQLMLAEVARKREDLERARAEEAQRLREREGAQPRTEQGAAQNPNAR*
Ga0137420_10349682	3300015054	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLAESEAVRQRAE*
Ga0137420_12091472	3300015054	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAVRRRAE*
Ga0187780_107294622	3300017973	Tropical Peatland	MASEPAQSQALSQWLQLMLAEITAKREALERARAEEARRDEESAA
Ga0187784_107815621	3300018062	Tropical Peatland	LPALSEWLQLMLGEIARKREELERGRAEQAQRALESDAASRDA
Ga0066655_100039222	3300018431	Grasslands Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD
Ga0066655_100646742	3300018431	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGAQQRSEPGAAQNPTTR
Ga0066667_100295732	3300018433	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAAQNPTTR
Ga0066667_103241092	3300018433	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARPHSEPGAAENPTTR
Ga0066667_113570952	3300018433	Grasslands Soil	VSAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD
Ga0066662_100582392	3300018468	Grasslands Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD
Ga0066662_119799192	3300018468	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLRERA
Ga0066669_101700532	3300018482	Grasslands Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAVRRHGERGAARASD
Ga0066669_106005712	3300018482	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRQREEDARQRTEPGAAENPTAR
Ga0193756_10173892	3300019866	Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAD
Ga0193733_10015293	3300020022	Soil	LTPLSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAE
Ga0193733_10327112	3300020022	Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQGAAENPTTR
Ga0179594_100173562	3300020170	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAVRQRAE
Ga0210407_103024522	3300020579	Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTETDAARQRAEPGAAENPTTR
Ga0210407_106114881	3300020579	Soil	LRALSEWLQLMLAEIVRKREELERARAEEAQRLTESEAARQRAE
Ga0179596_100154144	3300021086	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEA
Ga0179596_103219342	3300021086	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAE
Ga0210405_100333363	3300021171	Soil	LTALSEWLQLMLAEIVRKREELERARAEEAQRLTESEAARQRAE
Ga0210384_103780712	3300021432	Soil	MALSEWLQLMLAEIARKREELERARAEEAQRLTESEPARQRTK
Ga0210384_109636732	3300021432	Soil	LRALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAALQGAEQGAAQNPTTR
Ga0209350_100012640	3300026277	Grasslands Soil	MSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD
Ga0209350_10007235	3300026277	Grasslands Soil	VTALSEWLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAARNPTTR
Ga0209234_11971632	3300026295	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARRSEPGAAENPTTR
Ga0209234_12598372	3300026295	Grasslands Soil	ARKREELERARAEEAQRLKESEAARRHGEPGAARASD
Ga0209238_10565522	3300026301	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEQAQRLRESAGELPRAGQERPRI
Ga0209469_10364142	3300026307	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR
Ga0209055_100011420	3300026309	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLKESEATRRHGEPGAARASD
Ga0209055_10090317	3300026309	Soil	VTALSEWLQLMLAEIARKREDVERARAEEAQRLREEGARQRSEPGAARNPTTR
Ga0209239_100142711	3300026310	Grasslands Soil	CAVTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARRSEPGAAENPTTR
Ga0209153_10016455	3300026312	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD
Ga0209153_10119842	3300026312	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRGAPGAARNPTTR
Ga0209686_100038916	3300026315	Soil	MLAEIARKREELERARAEEAQRLKESEATRRHGEPGAARASD
Ga0209802_10792652	3300026328	Soil	AEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD
Ga0209473_10018823	3300026330	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRYGEPGAARASD
Ga0209377_12417861	3300026334	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEES
Ga0209057_11020612	3300026342	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHG
Ga0257176_10041591	3300026361	Soil	LTALSEWLQLMLAEIARKRQDLERARAEEAQRLTESEATRQRAEPGAPENLTTR
Ga0257167_10564122	3300026376	Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARRRAE
Ga0257158_10641191	3300026515	Soil	VTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQR
Ga0209806_10023082	3300026529	Soil	MSDWLQLMLAEIARKREELERAGAEEAQRLKESEAARRHGEPGAARASD
Ga0209376_10275992	3300026540	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRYGEPGAARASD
Ga0209648_103181562	3300026551	Grasslands Soil	LTALSEWLQLMLAEIARKREDLERARAEEAQRLRESEAARQHAEPGAAENLTTR
Ga0179587_104251951	3300026557	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARSAP
Ga0208983_10203402	3300027381	Forest Soil	LTALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAE
Ga0208993_10592341	3300027480	Forest Soil	VTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQ
Ga0209179_11392372	3300027512	Vadose Zone Soil	MLAEIARKREDLERARAEEAQRLREREGAQPRTEQGAAQNPNAR
Ga0209734_10000388	3300027535	Forest Soil	LTALSEWLQLMLAEIARKREELERARAEEARRLTESEAARQRGAQGAAENPTTRDTLC
Ga0209523_10252372	3300027548	Forest Soil	VTAMSEWLQLMLAEIARKREELERARAEEAQRLRESEAARRHGEQGAPENLNNR
Ga0209220_10079662	3300027587	Forest Soil	LTALSEWLQLMLAEIARKREDLERARAEEARRLTESEAARQRGEQGAAENPTTRDTLC
Ga0209733_10004052	3300027591	Forest Soil	MAPSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAEQGAAENLTTR
Ga0209329_10164122	3300027605	Forest Soil	LTALSEWLQLMLAEIARKREELERGRAEEAQRLTESEAARQRAE
Ga0209528_10066842	3300027610	Forest Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQGPRI
Ga0209106_11517182	3300027616	Forest Soil	MALSEWLQLMLAEIARKREDLERARAEAAQRLTESEAARQRAEQAAAENPTTR
Ga0209117_10638572	3300027645	Forest Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAEQGAAENPTTR
Ga0208981_10439131	3300027669	Forest Soil	LTPLSEWLQLMLAEIARKREELERARAEEAQRLTESEAVRQRAE
Ga0209068_102634292	3300027894	Watersheds	LTALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQGAAENPTTR
Ga0308309_105031102	3300028906	Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQATAENLTTR
Ga0307474_104073202	3300031718	Hardwood Forest Soil	VTALSEWLQLMLAEIAHKREDVERARAEEAQRLREREGARPRTEQGAAENPRAR
Ga0307469_100062243	3300031720	Hardwood Forest Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLRESEAGRQRAE
Ga0307469_115403431	3300031720	Hardwood Forest Soil	VTAMSEWLQLMLAEIARKREELERARAEEAQRLRENEAARRHG
Ga0307477_100332525	3300031753	Hardwood Forest Soil	MSEWLQLMLAEIARKREELDRARAEEAQRLRENEAARRHGEQGAPENLNNR
Ga0307475_100381833	3300031754	Hardwood Forest Soil	VTAMSEWLQLMLAEIARKREELDRARAEEAQRLRENEAARRHGEQGAPENLNNR
Ga0307479_113047562	3300031962	Hardwood Forest Soil	VTALSEWLQLMLAEIAHKREDLERARAEEAQRLREREGASPRTEQGAAQNPNAR
Ga0307471_1005067702	3300032180	Hardwood Forest Soil	VTAMSEWLQLMLAEIARKREELERARAEEAQRLRENEAARRHGEQGAPENLNNR
Ga0307471_1041521032	3300032180	Hardwood Forest Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTESDAVRQRAEQGAAENLTAR
Ga0307472_1000262193	3300032205	Hardwood Forest Soil	VTAMSEWLQLMLAEIARKREELERARAEEAQRLRENEAAQRHGEQGAPENLNNR
Ga0335080_116098011	3300032828	Soil	WLQLMLAEIAAKREAQQRARAEEAQRTAERAAGPHSGNGTAPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F059800

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences