Metagenome / Metatranscriptome Family F059545

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059545
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	47 residues
Representative Sequence	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFHEIEELV
Number of Associated Samples	77
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.24 %
% of genes near scaffold ends (potentially truncated)	96.24 %
% of genes from short scaffolds (< 2000 bps)	93.23 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.248 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.827 % of family members)
Environment Ontology (ENVO)	Unclassified (60.150 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.669 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.33% β-sheet: 20.00% Coil/Unstructured: 54.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.52.1.35: Virus-type replication-repair nuclease (VRR-Nuc)	d4qbna_	4qbn	0.64605
c.52.1.18: Hjc-like	d1hh1a_	1hh1	0.6402
c.52.1.0: automated matches	d2wcwa_	2wcw	0.63316
c.52.1.18: Hjc-like	d1gefa_	1gef	0.62619
c.77.1.5: Phosphotransacetylase	d1vmia1	1vmi	0.62559

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF00076	RRM_1	62.41
PF00270	DEAD	6.02
PF00487	FA_desaturase	1.50
PF00313	CSD	1.50
PF03683	UPF0175	1.50
PF00072	Response_reg	0.75
PF09250	Prim-Pol	0.75
PF00271	Helicase_C	0.75
PF04545	Sigma70_r4	0.75
PF16117	DUF4833	0.75
PF09723	Zn-ribbon_8	0.75
PF01841	Transglut_core	0.75
PF05721	PhyH	0.75
PF03979	Sigma70_r1_1	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	1.50
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	1.50
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	1.50
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.75
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.25 %
Unclassified	root	N/A	0.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.25 %
Unclassified	root	N/A	0.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.25 %
Unclassified	root	N/A	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.75 %
Unclassified	root	N/A	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.80 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.75 %
Unclassified	root	N/A	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.80 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.26 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	2.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.75 %
Unclassified	root	N/A	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.26 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	2.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.75 %
Unclassified	root	N/A	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12640058	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300004104\|Ga0058891_1013297	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	569	Open in IMG/M
3300005332\|Ga0066388_101104518	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300005332\|Ga0066388_103947209	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300005332\|Ga0066388_104623264	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005332\|Ga0066388_108488026	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	512	Open in IMG/M
3300005713\|Ga0066905_101361410	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300005764\|Ga0066903_106978896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300005764\|Ga0066903_107628499	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005764\|Ga0066903_108069858	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005764\|Ga0066903_109030844	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300006032\|Ga0066696_10137080	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300010043\|Ga0126380_10693646	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300010043\|Ga0126380_11182604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300010048\|Ga0126373_11033748	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300010048\|Ga0126373_11398927	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300010358\|Ga0126370_10219418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1452	Open in IMG/M
3300010358\|Ga0126370_10366729	All Organisms → cellular organisms → Bacteria → Acidobacteria	1170	Open in IMG/M
3300010358\|Ga0126370_11529098	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300010359\|Ga0126376_11354969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300010359\|Ga0126376_11698101	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300010361\|Ga0126378_11084440	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300010361\|Ga0126378_12887818	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300010361\|Ga0126378_12971659	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300010362\|Ga0126377_11918846	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300010366\|Ga0126379_10100735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2569	Open in IMG/M
3300010376\|Ga0126381_101060211	All Organisms → cellular organisms → Bacteria → Acidobacteria	1170	Open in IMG/M
3300010376\|Ga0126381_101928236	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300010376\|Ga0126381_102355160	All Organisms → cellular organisms → Bacteria → Acidobacteria	764	Open in IMG/M
3300010376\|Ga0126381_102559267	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300010398\|Ga0126383_10423605	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300010398\|Ga0126383_11475501	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300012405\|Ga0134041_1213495	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300016270\|Ga0182036_10697126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300016270\|Ga0182036_10775073	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300016270\|Ga0182036_11410767	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300016270\|Ga0182036_11922966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300016294\|Ga0182041_10680339	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300016319\|Ga0182033_10878386	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300016341\|Ga0182035_10125931	All Organisms → cellular organisms → Bacteria → Acidobacteria	1925	Open in IMG/M
3300016341\|Ga0182035_10398829	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300016341\|Ga0182035_11184485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300016341\|Ga0182035_11279592	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300016357\|Ga0182032_10501586	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300016371\|Ga0182034_10125962	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300016371\|Ga0182034_11515296	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300016387\|Ga0182040_10828864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300016387\|Ga0182040_10829392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300016404\|Ga0182037_10711003	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	861	Open in IMG/M
3300016404\|Ga0182037_10723987	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300016422\|Ga0182039_10090865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2224	Open in IMG/M
3300016422\|Ga0182039_10170257	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300016422\|Ga0182039_11674691	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300016445\|Ga0182038_10479897	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300016445\|Ga0182038_11073236	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300018062\|Ga0187784_10425112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1073	Open in IMG/M
3300018062\|Ga0187784_11533355	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300018085\|Ga0187772_11287693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300018086\|Ga0187769_10654294	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300018088\|Ga0187771_10059435	All Organisms → cellular organisms → Bacteria	2998	Open in IMG/M
3300018088\|Ga0187771_10494535	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300021444\|Ga0213878_10110482	All Organisms → cellular organisms → Bacteria → Proteobacteria	1121	Open in IMG/M
3300022504\|Ga0242642_1099424	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	507	Open in IMG/M
3300022724\|Ga0242665_10339383	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	535	Open in IMG/M
3300026315\|Ga0209686_1022153	All Organisms → cellular organisms → Bacteria → Acidobacteria	2515	Open in IMG/M
3300026819\|Ga0207765_106639	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300026823\|Ga0207759_108232	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300026854\|Ga0207727_110675	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300026983\|Ga0207856_1020023	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300027011\|Ga0207740_1008743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1532	Open in IMG/M
3300027035\|Ga0207776_1014669	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300027039\|Ga0207855_1026033	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300031543\|Ga0318516_10344173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	861	Open in IMG/M
3300031544\|Ga0318534_10363581	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300031544\|Ga0318534_10753375	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031545\|Ga0318541_10442472	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300031545\|Ga0318541_10552068	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300031546\|Ga0318538_10687863	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300031546\|Ga0318538_10761666	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031573\|Ga0310915_11295842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300031719\|Ga0306917_10485496	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300031744\|Ga0306918_10636588	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300031768\|Ga0318509_10404619	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300031794\|Ga0318503_10308795	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300031796\|Ga0318576_10234492	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300031796\|Ga0318576_10359366	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300031833\|Ga0310917_10399061	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300031833\|Ga0310917_10708511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300031879\|Ga0306919_11005225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	637	Open in IMG/M
3300031880\|Ga0318544_10134061	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300031880\|Ga0318544_10312131	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300031880\|Ga0318544_10441427	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300031890\|Ga0306925_10434440	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300031890\|Ga0306925_10737930	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300031890\|Ga0306925_12128662	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031890\|Ga0306925_12276701	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031893\|Ga0318536_10637695	Not Available	532	Open in IMG/M
3300031910\|Ga0306923_11144202	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	835	Open in IMG/M
3300031912\|Ga0306921_10381933	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300031912\|Ga0306921_10541206	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300031912\|Ga0306921_10631161	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300031912\|Ga0306921_11501985	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300031941\|Ga0310912_10925829	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300031942\|Ga0310916_10017626	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4968	Open in IMG/M
3300031942\|Ga0310916_10386525	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300031942\|Ga0310916_11442944	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031946\|Ga0310910_10493944	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300031946\|Ga0310910_10527344	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300031946\|Ga0310910_10848251	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300031946\|Ga0310910_11395657	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031946\|Ga0310910_11483745	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031947\|Ga0310909_10394875	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300031954\|Ga0306926_10108648	All Organisms → cellular organisms → Bacteria	3408	Open in IMG/M
3300031954\|Ga0306926_10140270	All Organisms → cellular organisms → Bacteria	2991	Open in IMG/M
3300031954\|Ga0306926_10300888	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
3300031981\|Ga0318531_10139906	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300031981\|Ga0318531_10304153	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300032001\|Ga0306922_10902607	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300032001\|Ga0306922_11224443	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300032039\|Ga0318559_10550689	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300032060\|Ga0318505_10356864	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300032064\|Ga0318510_10258054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300032065\|Ga0318513_10347601	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300032068\|Ga0318553_10716821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300032076\|Ga0306924_12001497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300032261\|Ga0306920_103732368	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300032828\|Ga0335080_10066773	All Organisms → cellular organisms → Bacteria	3986	Open in IMG/M
3300032893\|Ga0335069_10206235	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300033158\|Ga0335077_10411493	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300033289\|Ga0310914_10210979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1736	Open in IMG/M
3300033289\|Ga0310914_10316152	All Organisms → cellular organisms → Bacteria → Acidobacteria	1409	Open in IMG/M
3300033289\|Ga0310914_10561685	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300033290\|Ga0318519_10718278	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.70%
Loam	Environmental → Terrestrial → Soil → Loam	13.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.77%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	61.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.03%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.51%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.50%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026819	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 (SPAdes)	Environmental	Open in IMG/M
3300026823	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 (SPAdes)	Environmental	Open in IMG/M
3300026854	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes)	Environmental	Open in IMG/M
3300026983	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 21 (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_126400581	3300000789	Soil	LSVKVVAAINGMKKSGHDAHLYKHQGKVWVEIDRCMLATFDEVEQLVDRVH
Ga0058891_10132971	3300004104	Forest Soil	MSVKVVAAIHSMNKRGHKAHLFKHEGHTWVEIDQRMLASFDEMEQIVDGKH
Ga0066388_1011045182	3300005332	Tropical Forest Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDQSMLASFHGIEELVAVSIHSKS*
Ga0066388_1039472092	3300005332	Tropical Forest Soil	LSVKVVAAINGMNKLGHDARLYKHQGKVWVEIDQCMLASFEEIEELVDGVH
Ga0066388_1046232643	3300005332	Tropical Forest Soil	VKVVAGINGMNKLGHDAHLYRHEDKVWVEIDHCMLASFEEI
Ga0066388_1084880262	3300005332	Tropical Forest Soil	VSVKVVAAINGMNKLGHDAHLYKHQGKVWVEIDQCMLASFEEIEEL
Ga0066905_1013614101	3300005713	Tropical Forest Soil	LSVKVVAAINGMKKSGHDAHLYKHQGKVWVEIDQCMLA
Ga0066903_1069788961	3300005764	Tropical Forest Soil	LSVKVVAAINGMNKSGHQAQLLRHQGKVWVEIDQSMLASFDEI
Ga0066903_1076284991	3300005764	Tropical Forest Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDQSMLASFHE
Ga0066903_1080698581	3300005764	Tropical Forest Soil	VSVKVVSAINSMNKQGHHARVYRHQDKVWVEIDQCMLA
Ga0066903_1090308442	3300005764	Tropical Forest Soil	VSVKVVAAINSMNKQGHNARVYRHQNKMWVEIDQSMLASFHEIEELVDG
Ga0066696_101370801	3300006032	Soil	VSVKVVAAINGMNKLGHDAHLCKHQGKVWVEIDQCMLASFEEIEELVDGVHSF
Ga0126380_106936463	3300010043	Tropical Forest Soil	LSVKVVAAINGMKKTGHDAHLYKHQGKVWVEIDHCMLASFDEIEQLVDKVHSF
Ga0126380_111826041	3300010043	Tropical Forest Soil	VKVVTAINGMNKLGHDAHLCKLEGKVWVEIDHCMLASFEEIE
Ga0126373_110337482	3300010048	Tropical Forest Soil	MNKQGHHARVYRHQDKTWVEIDQCMLASFDEIEELVDGVHSFEELA
Ga0126373_113989271	3300010048	Tropical Forest Soil	VSVKVVAAINSMNKHGHRARVYRHQDKTWVEIDQCMLASFDEIEELVDGVHSFEEAA
Ga0126370_102194183	3300010358	Tropical Forest Soil	VKVVAGINGMNKLGHDAHLYRHEDKVWVEIDHCMLASFEEIEELV
Ga0126370_103667291	3300010358	Tropical Forest Soil	LSVKVVAAINGMKKSGHDAHLYRHQGRVWVEIDRCML
Ga0126370_115290982	3300010358	Tropical Forest Soil	LSAWEQDLSVKVVAAINGMKKSGHDAHLYKHQGKVWVEIDQCMLATFGE
Ga0126376_113549693	3300010359	Tropical Forest Soil	VSVKVVAAINSMNKHGHHARIYRHQDKTWVEIDQCMLASFDEIEELVD
Ga0126376_116981012	3300010359	Tropical Forest Soil	VSVKVVAAINSMNKQGHYARVFRHRDKMWVEIDRCMLA
Ga0126378_110844401	3300010361	Tropical Forest Soil	VKVVAAINGMNKLGHDAHLYKHQGKVWVEIDQCMLASFEEI
Ga0126378_128878181	3300010361	Tropical Forest Soil	VKVAAAVNSMNKAGHDARVYRHQCEMWVEIDQCMLASFDEIEELVDGVRSF
Ga0126378_129716592	3300010361	Tropical Forest Soil	LSVKVVAAINGMKKSGHDAHLYKHQGKVWVEIDQCMLASFDEIVELVDGVH
Ga0126377_119188461	3300010362	Tropical Forest Soil	MGEQDLSVRVVAAINGMKKSGHDARPHKHQGKMWVEIDQCMLATFDEIEELVERVHS*
Ga0126379_101007351	3300010366	Tropical Forest Soil	VKVVAAINGMNKLGHDAHLYKHEGKVWVEIDHCMLASFEEIEE
Ga0126381_1010602111	3300010376	Tropical Forest Soil	VSVKVVAAINSMNKQGHYARIYRHQDKMWVEIDQCMLASFHEIEELVDGV
Ga0126381_1019282361	3300010376	Tropical Forest Soil	VSVKVAAAINSMNKHGHHARVYRHQDKTWVEIDQCMLASFDEIEEL
Ga0126381_1023551602	3300010376	Tropical Forest Soil	VSVKIVAAINSMNKQGHHARIFRHHDKMWVEIDQCMLASFDE
Ga0126381_1025592672	3300010376	Tropical Forest Soil	VSVKIVAAINSMNKQGHYARLYRHEGKTWVEIDQCMLA
Ga0126383_104236053	3300010398	Tropical Forest Soil	VREQDVSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFHEIEELVDGVHSFE
Ga0126383_114755012	3300010398	Tropical Forest Soil	LSVKVVAAINGMKKSGHDAHLYKHQGKVWVEIDGCMLATFDEIEQVV
Ga0134041_12134952	3300012405	Grasslands Soil	VKVVAAINGMNKLGHDAHLCKHQGKVWVEIDQCMLASFEEI
Ga0182036_106971263	3300016270	Soil	MSVKVVAAINSMNKQGHYARVYRNQDRMWVEIDQCMIASFDEIEELVDGVH
Ga0182036_107750732	3300016270	Soil	VSVKVAAAINSMNKQRHYARVYRHQNKMWVEIDHCMLASFHEIEELVDGVRSFE
Ga0182036_114107671	3300016270	Soil	VSVKVVAAINSMNKQGHYARVYRLQDKMWVEIDGCMLASFSEIEGLVDGVQSFDEL
Ga0182036_119229661	3300016270	Soil	VSVKVVAAINSMNKQGHYARIYRHQDKMWVEIDQCMLASFHEIEELVDGVH
Ga0182041_106803391	3300016294	Soil	VSVKVVAAINSMNKQGHDAHLYRHQGTVWVEIDQCMLASFHEIEELVDGVH
Ga0182033_108783862	3300016319	Soil	VSVKVAAAINSMNKQRHYARVYRHQNKMWVEIDHCML
Ga0182035_101259311	3300016341	Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFDEIEELV
Ga0182035_103988293	3300016341	Soil	VSVKVVAAINSMNKQGHHARAYRHQNKMWVEIDQSMLASFHEIE
Ga0182035_111844852	3300016341	Soil	VSVKVAAAINSMTKQGHYARIYRNQDKMWVEIDQCMLA
Ga0182035_112795921	3300016341	Soil	VSVKVVVAINSMNKQGHHARVCRHQDKMWVEIDQCMLASFDEIEELVDGVHSFEE
Ga0182032_105015861	3300016357	Soil	LSVKVVAAINGMNKKGHEVHLYRHEGKVWVEIDQCML
Ga0182034_101259625	3300016371	Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDQS
Ga0182034_115152962	3300016371	Soil	VSVKVVAAINSMIKRGHYARVYRHQDKMWVEIDQCMLASFHEIEELVD
Ga0182040_108288641	3300016387	Soil	VSVKVVAAINSMNKQGHYARIYRHQDKMWVEIDHCMLASFHEI
Ga0182040_108293921	3300016387	Soil	VSVKVVAAIHSMNKQGHYARIYRHQDKMWVEIDHCMLASFREIEELVDGVHSFEE
Ga0182037_107110033	3300016404	Soil	VSVKVVAAINSVNKQRHYARVYRRQGKMWVEIDQCMLASFHEIE
Ga0182037_107239871	3300016404	Soil	VSVKVVAAINNMNKQGHYARVYRHQNKMWVEIDQSMLASFHEIEEL
Ga0182039_100908654	3300016422	Soil	VSVKVVAAINSMNKQGHYARIYRHQDKMWVEIDQCMLA
Ga0182039_101702571	3300016422	Soil	VSVKVVAAINSMNKQGHYARVYRHRDKTWVEIDRCMLASFDEIEELIDGVH
Ga0182039_116746912	3300016422	Soil	VSVKVVSAINAMNKQGHYARVYRHQDKMWVEIDQCMLASFHEIEELVDGVHSFEELA
Ga0182038_104798972	3300016445	Soil	VSVKVVVAINSMNKQGHHARVCRHQDKMWVEIDQCMLASFDEIEELVDGVHSFEELA
Ga0182038_110732362	3300016445	Soil	VSVKVVAAINGMNKKGHKAHVCTRQGKQWVEIDQCMLASFHEIEELVDGV
Ga0187784_104251122	3300018062	Tropical Peatland	VDLIVGEKCVSVKVVAAINSMNKQGHYARLYRHQDKMWVEIDQCMLASFEEIEKLVDGVHSFEE
Ga0187784_115333551	3300018062	Tropical Peatland	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLA
Ga0187772_112876932	3300018085	Tropical Peatland	KVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFDEIEELVDGSIHSRS
Ga0187769_106542942	3300018086	Tropical Peatland	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFDEIEELVDGSIHSRS
Ga0187771_100594357	3300018088	Tropical Peatland	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFDEIEELVDGVHSFE
Ga0187771_104945353	3300018088	Tropical Peatland	VSAKVVAAINSMNKQGHYARVYRRQDKMWVEIDQCMLASFHEIE
Ga0213878_101104821	3300021444	Bulk Soil	VSVKVVAAINSMNKQGHHARIHRYQDKTWVEIDQCMLASFQEMEEL
Ga0242642_10994243	3300022504	Soil	MSVKVVAAIHSMNKRGHKAHLFKHEGRTWVEIDQRMLASFD
Ga0242665_103393833	3300022724	Soil	MSVKVVAAIHSMNKRGHKAHLFKHEGRTWVEIDQRMLASF
Ga0209686_10221531	3300026315	Soil	VSVKVVAAINGMNKLGHDAHLCKHQGKVWVEIDQCMVA
Ga0207765_1066393	3300026819	Tropical Forest Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFHEIEELVDGVHS
Ga0207759_1082321	3300026823	Tropical Forest Soil	VSVKVVAAINSMNKQGHDAHLYRHQGTVWVEIDQCMLASFHEIEELVDGVHSFE
Ga0207727_1106753	3300026854	Tropical Forest Soil	VSVKVVAAINSMNKQGHDAHLYRHQGTVWVEIDQCMLASFHEIEELVDGVHSFEEL
Ga0207856_10200232	3300026983	Tropical Forest Soil	VSVKVVAAINSMNKQGHHARVYRHQDKMWVEIDQCMLASFDEIEELV
Ga0207740_10087431	3300027011	Tropical Forest Soil	VSVKVVAAINSMNKQGHYAHISRHQGKVWVEIDQCMLASFEENRKTGRWSP
Ga0207776_10146692	3300027035	Tropical Forest Soil	VSVKVVAAINSMNKQGHHARVYRHQDKMWVEIDQCMLASFHEIEELVDG
Ga0207855_10260331	3300027039	Tropical Forest Soil	VSVKVVAAINSMNKQGHDAHLYRHQGTVWVEIDQCMLASFHEIEE
Ga0318516_103441731	3300031543	Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDQSMLASFHEIEELVDGVHSFEE
Ga0318534_103635811	3300031544	Soil	VSVKVVAAINSMNKQGHYARVYRHQNRMWVEIDQCMLASFHE
Ga0318534_107533752	3300031544	Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFDEIEEL
Ga0318541_104424721	3300031545	Soil	VSVKVVAAINSMNKQGHYARLYRHQDRMWVEIDQWM
Ga0318541_105520682	3300031545	Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCM
Ga0318538_106878632	3300031546	Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFHEIEELVDGVHSFEELA
Ga0318538_107616661	3300031546	Soil	VSVKVVAAINSMNKQGHYARLYRHQDRMWVEIDQWMLA
Ga0310915_112958421	3300031573	Soil	VSVKVVAAINSMNKQGHYARLYRQQDKIWVEIDQCMLASFHE
Ga0306917_104854963	3300031719	Soil	VSVKVVAAINSMNKQGHYARVYRRQDKMWVEIDQCMLASFHEIEELV
Ga0306918_106365881	3300031744	Soil	VSVKVVAAINSMNKHGHHARVYRHQDKTWVEIDQCMLASFDE
Ga0318509_104046192	3300031768	Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFD
Ga0318503_103087951	3300031794	Soil	VSVKVVAAINSMNKQGHHARAYRHQNKMWVEIDQSMLAS
Ga0318576_102344921	3300031796	Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDQSMLASFHEIEELVDGVHSFEELA
Ga0318576_103593662	3300031796	Soil	VSVKVVAAINSMNKHGHHARVYRHQDKTWVEIDQCMLASFDEIEELVDGVH
Ga0310917_103990613	3300031833	Soil	VSVKVVCAINSMNKQGHHARVYRHQDKVWVEIDQCMLASFDEIEELVDGVHSFEE
Ga0310917_107085111	3300031833	Soil	VSIKVVAAINSMNKQGHNARVYRHQDKMWVEIDQCMLASFDEIEEL
Ga0306919_110052252	3300031879	Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDESMLAEY
Ga0318544_101340611	3300031880	Soil	VSVKVVAAINSMNKQGHHARAYRHQNKMWVEIDQSMLASFHE
Ga0318544_103121312	3300031880	Soil	VSVKVVAAINSMNKQGHYARLYRHQDKMWVEIDQCMLASFHEIEELVEGVHSFEE
Ga0318544_104414271	3300031880	Soil	VSLKVAAAINSMNKQGHYARVYNHQGKVWVEIDQCMLASFQEIEELVDGVH
Ga0306925_104344401	3300031890	Soil	VSVKVVVAINSMNKQGHHARVCRHQDKMWVEIDQCMLASFDEIEELVDGVHSFE
Ga0306925_107379301	3300031890	Soil	VSVKVAAAINSMIKQGHYARLYRHQDKMWVEIDQCM
Ga0306925_121286622	3300031890	Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDQSMLA
Ga0306925_122767011	3300031890	Soil	VSVKIVAAINSMNRQGHYARIFRHQDKMWVEIDQCMLASFNEIEELVDGVH
Ga0318536_106376951	3300031893	Soil	VSIKVVAAINSMNKQGHNARVYRHQDKMWVEIDQC
Ga0306923_111442022	3300031910	Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDESMLAEYQLEEEFGCGIRPAVKA
Ga0306921_103819333	3300031912	Soil	VSVKVVAAINSMNKHGHHARVYRHQDKTWVEIDQCMLASFDEIEELVD
Ga0306921_105412061	3300031912	Soil	VSVKVAAAINSMNKQGHYARICRHQGKMWVEVDQCMLVSFDEIEELVDGVHSL
Ga0306921_106311611	3300031912	Soil	VSVKVVAAINSMNKQGHYARIYRHQDKMWVEIDQCMLASF
Ga0306921_115019851	3300031912	Soil	VSVKVVAAINSMNKQGHYARVYRNQNKMWVEIDQSMLASFHEIEELVDGVHSFE
Ga0310912_109258292	3300031941	Soil	VSVKVVAAINSMNKQGHYARLYRHQDRMWVEIDQCMLASFHEIEELVDGVHSF
Ga0310916_1001762610	3300031942	Soil	VSVKVVAAINSINKQGHYARVYRRQDKMWVEIDQCMLASFHEIEELVDGVHSFE
Ga0310916_103865251	3300031942	Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFDEIEELVDGV
Ga0310916_114429442	3300031942	Soil	VSVKVVAAINSMNKQGHYARVYRRQDKMWVEIDQCMLASFHEIEELVDGVHSFE
Ga0310910_104939441	3300031946	Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFHEIEEL
Ga0310910_105273443	3300031946	Soil	VSVKVVAAINSMNKQGHHARVYRHQDKTWVEIDQCMLASFDEIEELVDGVHSFEEL
Ga0310910_108482511	3300031946	Soil	MPVWEQHLSVKVVAAINSMKRGGHDAHLYKHQGKVWVEIDKCMLATF
Ga0310910_113956571	3300031946	Soil	VSVKVAAAINSMNKQGHYVRICRHQDKMWVEIDQCMLVSFHEIEE
Ga0310910_114837452	3300031946	Soil	VSVKVVAAINSMNKQGHYARVYRLQDKMWVEIDGCM
Ga0310909_103948753	3300031947	Soil	VSVKVVAAINSMNKQGHYARVYRHQDKMWVEIDQCMLASFHEIEELV
Ga0306926_101086481	3300031954	Soil	VSVKVVAAINSMNKQGHYARLYRQQDKIWVEIDQCMLASFHEIEELVDG
Ga0306926_101402701	3300031954	Soil	VSVKVAAAINSMNKQRHYARVYRHQNKMWVEIDHCMLASFH
Ga0306926_103008881	3300031954	Soil	VSVKVAAAINSMNKRGHYARVYRHQNKMWVEIDQCMLASFHEIEELVDGVHSFEELT
Ga0318531_101399061	3300031981	Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDQSM
Ga0318531_103041531	3300031981	Soil	VSLKVAAAINSMNKQGHYARVYNHQGKVWVEIDQCMLASFQEIEELVDGVHS
Ga0306922_109026071	3300032001	Soil	VSVKVVAAINSMNKQGHYARIYRHQDKMWVEIDQCMLASFHEIEELVDGVHSF
Ga0306922_112244431	3300032001	Soil	VSVKVVAAINGMNKKGHKAHVCRHQGKEWVEIDQCMLASFHEIEELVD
Ga0318559_105506892	3300032039	Soil	VSVKVVAAINSMNKQGHYARVYRHRDKTWVEIDRCMLA
Ga0318505_103568641	3300032060	Soil	VSVKVVAAINSMNKQGHYARVYRHQNKMWVEIDQSMLASFH
Ga0318510_102580543	3300032064	Soil	VSVKVVAAINSMNKQGHYARIYRHQDKMWVEIDHCMLASFHEIEQLVDGVHSFE
Ga0318513_103476011	3300032065	Soil	VSVKVVAAINSMNKHGHHARVYRHQDKTWVEIDQCMLASFDEIEE
Ga0318553_107168212	3300032068	Soil	VSVKVVAAINSMNKQGHYARIYRHQDKMWVEIDHCMLASFHEIEQ
Ga0306924_120014972	3300032076	Soil	VSVKVVAAINSMIKRGHYARVYRHQDKMWVEIDQCMLASFHEIE
Ga0306920_1037323681	3300032261	Soil	VSVKVVAAINNINKRGHYARVYRHQDKMWVEIDQCMLVSFQEIEELMD
Ga0335080_100667733	3300032828	Soil	VSAKIVPAINSMSKQGHCASVCRCQGKLWVEIDQCMLASFDEIEE
Ga0335069_102062351	3300032893	Soil	VSAKIVAAINSMNKQGHYARVCRYQGKLWDEIDQCMLVS
Ga0335077_104114931	3300033158	Soil	VSVKVVAAINGMNKQGLRAHLYRHGGKVWVEIDQCMLASFEEIEELVDGVHSF
Ga0310914_102109791	3300033289	Soil	NSMNKQGHYARIYRHQDKMWVEIDQCMLASFHEIEELVDGVH
Ga0310914_103161523	3300033289	Soil	MEQDVSVKVVAAINSMNKQGHDAHLYRHQGRVWVEIDQCM
Ga0310914_105616851	3300033289	Soil	VSVKVVAAINSMNKHGHHARVYRHQDKTWVEIDQCMLASFDEIEELVDGVHS
Ga0318519_107182781	3300033290	Soil	VSVKVVAAINSMNKQGHDAHLYRHQGRVWVEIDQCMLASFHEIEELVDGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059545

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences