Basic Information | |
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Family ID | F059239 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 134 |
Average Sequence Length | 50 residues |
Representative Sequence | MRIPIESSTSYRGRNSRPNWLALLGFIGLALAAGALGAVFSPGTSARAAAW |
Number of Associated Samples | 112 |
Number of Associated Scaffolds | 134 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 69.47 % |
% of genes near scaffold ends (potentially truncated) | 69.40 % |
% of genes from short scaffolds (< 2000 bps) | 67.16 % |
Associated GOLD sequencing projects | 106 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (90.299 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.925 % of family members) |
Environment Ontology (ENVO) | Unclassified (25.373 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (62.687 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 34.18% β-sheet: 0.00% Coil/Unstructured: 65.82% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 134 Family Scaffolds |
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PF03109 | ABC1 | 14.18 |
PF03073 | TspO_MBR | 2.24 |
PF04340 | DUF484 | 0.75 |
PF01209 | Ubie_methyltran | 0.75 |
COG ID | Name | Functional Category | % Frequency in 134 Family Scaffolds |
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COG0661 | Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family | Signal transduction mechanisms [T] | 14.18 |
COG3476 | Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog) | Signal transduction mechanisms [T] | 2.24 |
COG2226 | Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG | Coenzyme transport and metabolism [H] | 0.75 |
COG2227 | 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase | Coenzyme transport and metabolism [H] | 0.75 |
COG3159 | Uncharacterized conserved protein YigA, DUF484 family | Function unknown [S] | 0.75 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 90.30 % |
All Organisms | root | All Organisms | 9.70 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 14.93% |
Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 14.18% |
Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 9.70% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 8.21% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 5.97% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 5.22% |
Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 4.48% |
Host-Associated | Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated | 4.48% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 3.73% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 3.73% |
Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 2.99% |
Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 2.99% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.99% |
Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 2.24% |
Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 2.24% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.49% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.75% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.75% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.75% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.75% |
Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.75% |
Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.75% |
Permafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil | 0.75% |
Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 0.75% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.75% |
Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.75% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.75% |
Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.75% |
Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.75% |
Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.75% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
3300009500 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
3300009510 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG | Host-Associated | Open in IMG/M |
3300009525 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG | Environmental | Open in IMG/M |
3300009645 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 | Environmental | Open in IMG/M |
3300009662 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 | Environmental | Open in IMG/M |
3300009683 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG | Environmental | Open in IMG/M |
3300009701 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG | Host-Associated | Open in IMG/M |
3300009709 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
3300009824 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG | Environmental | Open in IMG/M |
3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
3300010877 | Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300014158 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG | Environmental | Open in IMG/M |
3300014164 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG | Environmental | Open in IMG/M |
3300014168 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG | Environmental | Open in IMG/M |
3300014493 | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG | Environmental | Open in IMG/M |
3300014499 | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG | Environmental | Open in IMG/M |
3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300014502 | Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300014658 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG | Environmental | Open in IMG/M |
3300014838 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300017946 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 | Environmental | Open in IMG/M |
3300018034 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10 | Environmental | Open in IMG/M |
3300018038 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10 | Environmental | Open in IMG/M |
3300018047 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 | Environmental | Open in IMG/M |
3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
3300019886 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2 | Environmental | Open in IMG/M |
3300019999 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1 | Environmental | Open in IMG/M |
3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
3300021411 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2 | Environmental | Open in IMG/M |
3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
3300023101 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14 | Environmental | Open in IMG/M |
3300024181 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34 | Environmental | Open in IMG/M |
3300026215 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes) | Environmental | Open in IMG/M |
3300026557 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal | Environmental | Open in IMG/M |
3300026911 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027002 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027313 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes) | Environmental | Open in IMG/M |
3300027574 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes) | Environmental | Open in IMG/M |
3300027575 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027676 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes) | Environmental | Open in IMG/M |
3300027684 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027692 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027698 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes) | Environmental | Open in IMG/M |
3300027701 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes) | Environmental | Open in IMG/M |
3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
3300027860 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes) | Host-Associated | Open in IMG/M |
3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
3300028565 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3 | Environmental | Open in IMG/M |
3300028775 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2 | Environmental | Open in IMG/M |
3300028781 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3 | Environmental | Open in IMG/M |
3300028789 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3 | Environmental | Open in IMG/M |
3300028806 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1 | Environmental | Open in IMG/M |
3300028808 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2 | Environmental | Open in IMG/M |
3300028860 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3 | Environmental | Open in IMG/M |
3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
3300029882 | III_Palsa_E1 coassembly | Environmental | Open in IMG/M |
3300029913 | III_Bog_N3 coassembly | Environmental | Open in IMG/M |
3300029917 | I_Bog_E1 coassembly | Environmental | Open in IMG/M |
3300029992 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3 | Environmental | Open in IMG/M |
3300030056 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3 | Environmental | Open in IMG/M |
3300030399 | II_Palsa_E2 coassembly | Environmental | Open in IMG/M |
3300030520 | III_Palsa_N2 coassembly | Environmental | Open in IMG/M |
3300030617 | II_Palsa_N2 coassembly | Environmental | Open in IMG/M |
3300030862 | Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300030878 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
3300031258 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1 | Environmental | Open in IMG/M |
3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
3300031837 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1 | Environmental | Open in IMG/M |
3300031902 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2 | Environmental | Open in IMG/M |
3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
3300034124 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14 | Environmental | Open in IMG/M |
3300034282 | Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12635J15846_107171192 | 3300001593 | Forest Soil | MRIPVESPTSYRGRNARPNWVTLMLFLGLALGAGVLGFLFSPAH |
JGIcombinedJ26739_1002491361 | 3300002245 | Forest Soil | MRILIESSTSYRGRNSRPNWLLLAVFIGAALAAGALGALFSPRAS |
Ga0062385_102558542 | 3300004080 | Bog Forest Soil | VKIRIETSMSYRGRNARPNWPALIGFTTLALAAGALGAIFSPGA |
Ga0062385_105437252 | 3300004080 | Bog Forest Soil | MRIPVESSTSYRGRNSRPNWLALLGFAGLALAAGALGAIFAPGGSAKAAAWYALLAKP |
Ga0062385_112299932 | 3300004080 | Bog Forest Soil | MRIPVESSTSYRGRNSRPNWLVLCIFLGLGFAADAIGAMFSHSARLGSAP |
Ga0062384_1006061372 | 3300004082 | Bog Forest Soil | VKIQVPSTTSYRGRNSRVNLPLLTAFVLVALGVGAVGAVFSPGFSP |
Ga0062384_1007432792 | 3300004082 | Bog Forest Soil | MRIPIESSTTYRGRNSRPNVPALLLFVGIALGVGVFAAAFSPLASAAAAQWYAVLAKPP |
Ga0062387_1011220952 | 3300004091 | Bog Forest Soil | MRIPIESSTSYRGRNSRPNLPALAFFLVLTLGAGVLGAWFSPGFSAPAAHWYATLVKPNWVLPQN |
Ga0062387_1015875401 | 3300004091 | Bog Forest Soil | MRIPIESSTSYRGRNSRPNLPALALFVGLALAVGALGAVFSPGLSKTAAQWYSML |
Ga0062389_1034845472 | 3300004092 | Bog Forest Soil | VRIPIESSTSFRGRNARPNWLALIAFIALALAAGAIGAVFSPARSPAAAVWYASLLK |
Ga0062389_1038067852 | 3300004092 | Bog Forest Soil | MRIPIDSATTYRGRNSRPNLPALVIFVGLALGAGVCAYLFSPAGSRAAAQWYAMLAKP |
Ga0062389_1046502321 | 3300004092 | Bog Forest Soil | MRIPIESSTSYRGRNSRPNLPALLVFVALALAVGAWGAVFSPGFS |
Ga0062388_1002904972 | 3300004635 | Bog Forest Soil | MRIPIESSTSYRGRNSRPNLPALLLSVVLALCAGAVAYRFSPFGSPEAARWYDMLVKADW |
Ga0070733_111641691 | 3300005541 | Surface Soil | MRIPVESSTSYRGRNARPNLPILAAFIAAALAAGALGALFSPAVSASTRHWYALLAKPHWAPP |
Ga0070761_108313632 | 3300005591 | Soil | MRIPIESSTSYRGRNSRPNLPVLALFLVLTLGAGAVGALFSPVFSASAAHWYLSLAKPNWLP |
Ga0070762_108817641 | 3300005602 | Soil | MRIPVDSTTSYRGRNARPNWISLLGFIAAAGAAGALGFL |
Ga0070763_102321731 | 3300005610 | Soil | VRIPVESSTSYRGRNARPNWLALIAFIALALAAGAIGAVFSPARSP |
Ga0070763_103471082 | 3300005610 | Soil | MRIPVDSTTSYRGRNARPNWISLLGFIAAAGAAGALGFLVSPARSAA |
Ga0070766_105318991 | 3300005921 | Soil | MRIHIDSTTSYRGRNSRPNWLALAVFIGVALSAGAAGAIFSPGGSAR |
Ga0075014_1002787061 | 3300006174 | Watersheds | MRIPIESATSYRGRNSRPNLPALTLFVGLSLAAGVFAYLYSPAGSAAAAQWYATLLKPSWQPPQTWF |
Ga0116229_104334872 | 3300009500 | Host-Associated | LRIPIGGSTSYRGRNARPNWLALLIFIGLALAAGAVGAVFSPGLSAATDHWYALLAKPEWSPPN |
Ga0116230_100117621 | 3300009510 | Host-Associated | MRIQVDSSTSYRGRNARPNWVALFVFIVVALASGAVGALFSPGV |
Ga0116220_102692961 | 3300009525 | Peatlands Soil | VKIRIETSTSYRGRNARPNWLVLIGFVALALAAGALG |
Ga0116106_11346561 | 3300009645 | Peatland | MRIPIESSTSYRGRNSRPNWLALLGFIGLALAAGALGAVFSPGTSARAAAW |
Ga0105856_12814211 | 3300009662 | Permafrost Soil | MRIPIESSTSYRGRNSRPQLHVLAAFIGAALAAGALNA |
Ga0116224_103908312 | 3300009683 | Peatlands Soil | MRIPVESSTSYRGRNSRPNWLALLGFVGLALAAGALGAIFAPGGSAKAAAWYALLAKP |
Ga0116228_107746452 | 3300009701 | Host-Associated | MRIPIESSTSYRGRNARPNWASLVGFIALALGSGAIGLPFSPLRSAAAAAWYASLSKPAWVI |
Ga0116227_108743352 | 3300009709 | Host-Associated | LRIPIGGATSYRGRNARPNWLALLCFIGLALAAGAIGAVFSPGLSAAHDHWYAMLAKPGWSPP |
Ga0116227_113250941 | 3300009709 | Host-Associated | MKIHIESSTTYRGRNSRPNLPALAVFLLLALGVGAVGAVFSPGISASAT |
Ga0116219_102105122 | 3300009824 | Peatlands Soil | VKIRIETSTSYRGRNARPNWLVLIGFVALALAAGALGALFSPGGSAGTGAWYATLSKPAW |
Ga0074046_106469552 | 3300010339 | Bog Forest Soil | MRIPVESSTSYRGRNSRPNWLALLSFVGLAFAAGASGAFFSPGGSARAAAWYALLAQPAWTPH |
Ga0126356_109034851 | 3300010877 | Boreal Forest Soil | MRIPIESSTSYRGRNSRPNLPVLALFVLLALGVGALGAVFSPGVSAAATRW |
Ga0137363_114101131 | 3300012202 | Vadose Zone Soil | MRIPIEGSTSYRGRNSRPNLPALALFVVLALGVGALGS |
Ga0137398_102414572 | 3300012683 | Vadose Zone Soil | MRIPIEGSTSYRGRNSRPNLPALALFVVLALGVGALGAL |
Ga0137413_101838972 | 3300012924 | Vadose Zone Soil | MRIPIEGSTSYRGRNSRPNLPALTLFVLLALGVGALGAVFSPGISASATQWYAALA |
Ga0137416_116541732 | 3300012927 | Vadose Zone Soil | MKIPVGSSTSYRGRNYRPNWLALAGFVALALAVGLLG |
Ga0181521_103919662 | 3300014158 | Bog | MRIPIENPTSYRGRNARPNWVTLMLFVGIALGAGALGFLFSPAHSPATAQWYAGLAKPPWIAPSRWF |
Ga0181532_105169281 | 3300014164 | Bog | VKIRIETSMSYRGRNARPNWPALIGFTTLALAAGALGAIFSPGASAGAG |
Ga0181534_102786821 | 3300014168 | Bog | MRIPVESTTSYRGRNARPNWIALLGFIAVAGLAGA |
Ga0182016_106332381 | 3300014493 | Bog | MRIPVENTTSYRGRNARPNWIALLGFIASAIAAGALGELVSPA |
Ga0182012_110236412 | 3300014499 | Bog | VRIPIETSTSYRGRNSRPNWLALLVFLPLALSAGAVGAGFSPAFSPASAA |
Ga0182024_119260541 | 3300014501 | Permafrost | MRIPVESATSYRGRNSRPNLPALAVLVLLALTAGVLGYLFSPASSP |
Ga0182021_121796461 | 3300014502 | Fen | MRIPIESSTSYRGRNARPNWLLLAAFIGSALAAGALGALFSPAVSTAARHWYAALAKPGW |
Ga0181519_107109961 | 3300014658 | Bog | MRIPVENTTSYRGRNARPNWIALLGFVASAIAAGALGALVSPARSAAIGAWYAGLSKP |
Ga0182030_103874572 | 3300014838 | Bog | MRIPIEGATSYRGRNSRPNWLILAAFIAAALAAGAVGAVFSPGVSAQANHWYALLAKP |
Ga0187879_104773851 | 3300017946 | Peatland | MRIPIENPTSYRGRNARPNWVTLMLFVGIALGAGALGFLFS |
Ga0187863_103865882 | 3300018034 | Peatland | MRIEIQGPTSYRGRNARPNWLALLASIVIALAAGALGAV |
Ga0187863_107442501 | 3300018034 | Peatland | VRIPIESSTSYRGRNARPNWIALVAFVGLSLAAGAVGALFS |
Ga0187855_104829582 | 3300018038 | Peatland | MRIPVESSTSYRGRNSRPNWLALLGFVGLAFAAGALGAFF |
Ga0187859_108526952 | 3300018047 | Peatland | MRIPIENPTSYRGRNARPNWVTLMLFIGVALGAGAIGFLF |
Ga0187772_100242455 | 3300018085 | Tropical Peatland | VRIPIESSTSYRGRNARPNWLALIAFVVLALAAGVVGAVFSPA |
Ga0193727_11885162 | 3300019886 | Soil | MRIPIEGSTSYRGRNSRPNLPALTLFVLLALGVGALGAVFSPGISASATQWYAALAKP |
Ga0193718_10166342 | 3300019999 | Soil | MRIPIEGSTSYRGRNSRPNLPALTLFVLLALGVGALGAVFSPGISASATQWYAALAKPEWLP |
Ga0210403_108425332 | 3300020580 | Soil | MRIPIESSTSYRGRNSGPNLSALALFLVLSLSVGAVGALFSPAFSASAAHWYLGLVKPDWLPPQKWF |
Ga0210403_112934501 | 3300020580 | Soil | MRIPIESSTSYRGRNSRPNLPALTLFVALALGVGALGAVFSPGVSASATRW |
Ga0210395_103026792 | 3300020582 | Soil | MRIPIESATTYRGRNSRPNLPALLVFVGLALGVGVFAAAFTPAASAAAAQWYALLVKLCI |
Ga0210395_109756331 | 3300020582 | Soil | MRIPIESSTSYRGRNSRPNLPALAAFLVLALGAGAVGALFSPGFSASAAHWYAALVKPDWLPPQ |
Ga0210395_111018591 | 3300020582 | Soil | MRIPIESSTSYRGRNSRPNLPALAAFLVLSLCAGAVGALFSPGFSAPAAHWYAALAKPDWVPAQ |
Ga0210401_113904612 | 3300020583 | Soil | MRIHIDSTTSYRGRNSRPNWLALAVFIGLAFSAGALGAIFSPGGSARAAEWYAMLL |
Ga0210396_101949071 | 3300021180 | Soil | MRIPVESPTSYRGRNARPNWVTLMLFLGLALGAGALGFLFSPAHSPAAAHWYTGLAKPPWTAPG |
Ga0210388_101990622 | 3300021181 | Soil | MRIPVESPTSYRGRNARPNWVTLMLFLGLALGAGVLGFLFSPAHSAAAAHWYTGLA |
Ga0210385_103537841 | 3300021402 | Soil | MRIPIESATTYRGRNSRPNLPALALFVGLALGVGVFAYLFSPAGSGAAARW |
Ga0210385_107350821 | 3300021402 | Soil | MRIPIDSGTSFRGRNSRPNWLVLTAFIGAALAAGAFAAF |
Ga0210397_111998641 | 3300021403 | Soil | MKIRIDSSTSYRGRNSRPNLPVLGFFLLLALGVAAVGAVFSPGLSASATQWYAAL |
Ga0210389_113560471 | 3300021404 | Soil | VRIPVESSTSYRGRNARPNWLALIAFVALAFAAGAIGAVFSPARSPAAGVW |
Ga0210387_107355032 | 3300021405 | Soil | MRIPVESSTSYRGRNARPNWLILAAFIAAAFGAGALGALFSPAVSSSARHW |
Ga0193709_10002901 | 3300021411 | Soil | MRIPIEGSTSYRGRNSRPNLPALTLFVLLALGVGALGAVFSPGISASATQWYAALAKPGWLP |
Ga0210394_113996751 | 3300021420 | Soil | VRIPVESSTSYRGRNARPNWLALIAFIALALAAGAIGAVFSPARSPAAAVWYASLFKPSWIAPS |
Ga0210394_114175001 | 3300021420 | Soil | MRIPIESATSYRGRNSRPNLPALTLFVALALGVGALGAVFSPSVSASA |
Ga0210391_112925272 | 3300021433 | Soil | MRIPIESSTSYRGRNSRPNLPALAVFLVLTLGAGVGGAL |
Ga0210392_109164041 | 3300021475 | Soil | VKIQIPPTTHHRGRNSRLNLPALTAFVLVALGVGAVGAMFSPGFSPAAMQWY |
Ga0210398_102083061 | 3300021477 | Soil | MRIPIESSTSYRGRNSRPNLPALAFFLVVTLSAGVAGAWFSPGF |
Ga0210409_110567341 | 3300021559 | Soil | VRIPIESSTSYRGRNSRPNWLILAASIGTAFAAGALGAVFSPRMSAAAAQWYA |
Ga0224557_11649341 | 3300023101 | Soil | MRIPIESSTSYRGRNSRPNLPALALLVILALGVGALGAVFSP |
Ga0247693_10696691 | 3300024181 | Soil | MRIPIESATSYRGRNSRPNWLVLAAFVGGALAAGAIGAAFSPAASS |
Ga0209849_10300692 | 3300026215 | Soil | MRIQIESSTSYRGRNARPNWVILAAFIAGALLAGAIGAVFSPGVSAAANHWYAMLAK |
Ga0179587_111473372 | 3300026557 | Vadose Zone Soil | MRILVESSTSYRGRNSRPNWLILAAFIGSALAAGALNAVFSPRMSTAANHWYA |
Ga0209620_10113041 | 3300026911 | Forest Soil | MKIRIESSTSYRGRNSRPNLPALSVFLLLALGVGAVGAVFSPGLSVVAAHWYAA |
Ga0209110_10269341 | 3300027002 | Forest Soil | MKIRIESSTSYRGRNSRPNLPALSVFLLLALGVGAVGAVFSPGLSVV |
Ga0207780_10847241 | 3300027313 | Tropical Forest Soil | MRIPIEGTTSYRGRNSRTNWVAMAGWVALALGAGALAAA |
Ga0208982_10191591 | 3300027574 | Forest Soil | MRIPIESSTSYRGRNSRPNLPALMLFVVLALCVGALGAVFSPG |
Ga0209525_10159212 | 3300027575 | Forest Soil | MRILIESSTSYRGRNSRPNWLLLAVFIGAALAAGALGALFSPRASTAAG |
Ga0209333_11667712 | 3300027676 | Forest Soil | MRIPVESPTSYRGRNARPNWLALMLFLGLALGAGAIGFLFSPVHSPDAAHWYAGLAKP |
Ga0209626_11665382 | 3300027684 | Forest Soil | MRIPIESSTSYRGRNSRPNLPALTLFVVTALGVGALGAAFSPGIS |
Ga0209530_11550302 | 3300027692 | Forest Soil | MRILIESSTSYRGRNSRPNWLLLSVSIGAALAAGA |
Ga0209446_11234002 | 3300027698 | Bog Forest Soil | MSYRGRNARPNWPALIGFTTLALAAGALGAIFSPGA |
Ga0209447_100486581 | 3300027701 | Bog Forest Soil | VTQRMRIPIESATTYRGRNSRPNLPALVLFVGIAL |
Ga0209693_102770172 | 3300027855 | Soil | MRIPVDSTTSYRGRNARPNWISLLGFIAAAGAAGALGFLVSPARSAAIGAWY |
Ga0209611_100932581 | 3300027860 | Host-Associated | MRIPVESPTSYRGRNSRPNLPVLALSVALALAVELMAYLFSPAASP |
Ga0209275_102244002 | 3300027884 | Soil | MRIPVDSTTSYRGRNARPNWISLLGFIAAAGAAGALGFLA |
Ga0209624_106656061 | 3300027895 | Forest Soil | VRIPVESSTSYRGRNARPNWLALIAFVALALAAGVIGAVFSPARSPAAA |
Ga0209415_107833091 | 3300027905 | Peatlands Soil | MRIQIESPTSYRGRNARPNWLVLLAFIVLALAAGALGAIFSPRVATP |
Ga0209006_106194782 | 3300027908 | Forest Soil | MRIPIESSTSYRGRNSRPNWLLLAVSMGAALAAGALGAVFSQRAAA |
Ga0302145_102787342 | 3300028565 | Bog | VRIPIDSATSYRGRNARPNWLILATFIAAALAAGAVGAVFSPALSAEANHWYA |
Ga0302231_101351111 | 3300028775 | Palsa | MRIPIESSTSYRGRNSRPNWLVFAAFVGLTLVIGAF |
Ga0302223_101048801 | 3300028781 | Palsa | MRIPIESSTSYRGRNSRPNWLVFAAFVGLTLVIGAFGASL |
Ga0302223_101830152 | 3300028781 | Palsa | MRIPIENPTSYRGRNARPNWATLGLFVGVAFGAGAIGFLFSPAHSPAAAQWYAGLAKPP |
Ga0302232_103794692 | 3300028789 | Palsa | MRILIESSTSYRGRNSRPNWLLLSASIAAALAAGALGAILSPRLSSSA |
Ga0302221_105569461 | 3300028806 | Palsa | MRIPIESSTSYRGRNSRPNWLVFAAFVGLTLVIGAFGASLSPRVSAAAAGWYTHLSK |
Ga0302228_101229392 | 3300028808 | Palsa | MRIPIEGSTTYRGRNSRPNLPALVAFVGVAFCVGALGAVFSPGVSKSAAQ |
Ga0302199_11906081 | 3300028860 | Bog | MRIPIEGATSYRGRNSRPNWLILAAFIAAALAAGAVGAVFS |
Ga0308309_109125952 | 3300028906 | Soil | MRIPIESSTSYRGRNSGPNLPALALFLVLSLSVGA |
Ga0311368_102791582 | 3300029882 | Palsa | MRIPVDNRTSYRGRNARPNWATLGLFVGVALGAGAIGFLFSPAHSPAAAQWYGGLA |
Ga0311362_106692311 | 3300029913 | Bog | MRIPVENTTSYRGRNARPNWIALLGFVASAIAAGALGALVSPARSAAIGAWYA |
Ga0311326_104955441 | 3300029917 | Bog | MKIVIENSTSYRGRNARPNWLALLAFIALALAAGAIGLFFSPARS |
Ga0302276_102762541 | 3300029992 | Bog | MRIPVENTTSYRGRNARPNWIALLGFIATAAAAGALGALVSPARSAAI |
Ga0302181_102777982 | 3300030056 | Palsa | MRIPIESSTSYRGRNSRPNLPALAVFLVLTLAAGV |
Ga0311353_109290481 | 3300030399 | Palsa | MRIPIESSTSYRGRNSRPNLPALAVFLVLTLAAGVAGALFSPGFSSSAARWYAALAKPDWVP |
Ga0311372_103152971 | 3300030520 | Palsa | MRIPIEGSTTYRGRNSRPNLPALVAFVGVAFCVGA |
Ga0311372_112053681 | 3300030520 | Palsa | MRIPIESSTSYRGRNSRPNWLVFSAFVGLTLIIGAFGASLS |
Ga0311372_124406241 | 3300030520 | Palsa | MRIPIESSTSYRGRNSRPNLPALAGFVGLALAVGLLGAVFSPGLSASATTWYAMLAKPEWLPP |
Ga0311356_118880032 | 3300030617 | Palsa | MRIPVESSTSYRGRNAKPNWVVLLLFMGIALGVGALGILFLPGPWY |
Ga0311356_120688162 | 3300030617 | Palsa | VRIQIDSPTSYRGRNARPNWLTLLLFIGLALGAGALGFLFSPAHSPAAAHWYAGL |
Ga0265753_10461572 | 3300030862 | Soil | MRIPIESSTSYRGRNSRPNLPALALFLVLTLSAGVVGALFSPGFSAAAAHWYAAVVQPDWVPP |
Ga0265770_10794891 | 3300030878 | Soil | MRIPIESSTSYRGRNSRPNLPALALFLVLTLSAGVVGALFSPGFSAAA |
Ga0170834_1054275872 | 3300031057 | Forest Soil | MRIPIESSTSYRGRNSGLNLPALASFLVLALGVGALGAFRTKQK |
Ga0170824_1140339191 | 3300031231 | Forest Soil | VRILVESSTSYRGRNSRPNWLILAAFIGSALAAGAINTVF |
Ga0302325_112096901 | 3300031234 | Palsa | MRIPIDNRTSYRGRNARPNWATLGLFVGVALGAGAIGFLFSPA |
Ga0302325_124462312 | 3300031234 | Palsa | MRIPIDSPTSYRGRNARPNWIALMLFVGAALGAGAIGYLFSPAHSPAAAHWYVGLAKP |
Ga0302324_1010999581 | 3300031236 | Palsa | MRIPIESSRSYRGRNSRPNWLALLALIGIALGAGAIGAIFSPGGSAKAAAWYAT |
Ga0302318_106248672 | 3300031258 | Bog | MRIPIESSTSYRGRNSRPNWLVFTAFVGLTLIIGAFGASLSPRLSAAA |
Ga0302326_121612551 | 3300031525 | Palsa | MRIPVESSTSYRGRNAKPNWVVLLLFMGIALGVGALGILFLPG |
Ga0310686_1038421242 | 3300031708 | Soil | MRIPIESSTSYRGRNSRPNWLILAAFIATALAAGAVGAVFSPGVSASANH |
Ga0310686_1104262052 | 3300031708 | Soil | MRIPIESSRSYRGRNSRPNWLALLGFIGVALGAGAIGAIFSPGGSAKA |
Ga0307476_111031981 | 3300031715 | Hardwood Forest Soil | MRIPIESSTSYRGRNSRPNLPALALFLVLTLSAGV |
Ga0307474_107778442 | 3300031718 | Hardwood Forest Soil | MRIPVESPTSYRGRNARPNWVTLMLFLGLALGAGALGYLFSPAHSPATAHW |
Ga0307478_100560354 | 3300031823 | Hardwood Forest Soil | VRIPIESSTSYRGRNSRPNFPALAAFLALSLGTGVVGALFSPGFSASAAHWYAALAKPAWLPPQS |
Ga0307478_108430081 | 3300031823 | Hardwood Forest Soil | MRIPIESSTSYRGRNSRPNLPALALFLVLTLSAGVV |
Ga0302315_107469981 | 3300031837 | Palsa | MRIPIESSRSYRGRNSRPNWLALLGLIGLALGAGAIGAIFSPGGSAKA |
Ga0302322_1024795552 | 3300031902 | Fen | MRIPIESSTSYRGRNARPNWLLLAAFIGSALAAGALGALFSPAVSAATRQWYAALAKPGWAPSDSWF |
Ga0335078_107587701 | 3300032805 | Soil | MRIPVESKTSYRGRNSRPNWLALLGFILLALAAGAAGAVFSPGGSARAAAWYAGLSKPAWVAP |
Ga0370483_0225971_454_639 | 3300034124 | Untreated Peat Soil | MKIPIESSTSYRGRNSRANLPALVVFLLLTLGVGAVGALFSPGFSASVAHWYSGLIKPAWLP |
Ga0370483_0338327_385_519 | 3300034124 | Untreated Peat Soil | MRIQVERSTSYRGRNARPNWLILAAFVAGALLAGAIGAIFSPAVS |
Ga0370492_0007206_3_185 | 3300034282 | Untreated Peat Soil | MRIPVENTTSYRGRNARPNWIALLGFIAMACAAGGLGALVSPARSAAIGAWYAGLVKPPW |
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