Metagenome Family F059091

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059091
Family Type	Metagenome
Number of Sequences	134
Average Sequence Length	73 residues
Representative Sequence	MPTSSAKPRLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Number of Associated Samples	99
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	58.65 %
% of genes near scaffold ends (potentially truncated)	29.85 %
% of genes from short scaffolds (< 2000 bps)	81.34 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.448 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.373 % of family members)
Environment Ontology (ENVO)	Unclassified (34.328 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.537 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.48% β-sheet: 0.00% Coil/Unstructured: 47.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF01925	TauE	5.97
PF00072	Response_reg	3.73
PF09828	Chrome_Resist	2.24
PF01734	Patatin	1.49
PF10571	UPF0547	1.49
PF02518	HATPase_c	1.49
PF13505	OMP_b-brl	1.49
PF02639	DUF188	1.49
PF02151	UVR	0.75
PF11932	DUF3450	0.75
PF00593	TonB_dep_Rec	0.75
PF07589	PEP-CTERM	0.75
PF00694	Aconitase_C	0.75
PF12704	MacB_PCD	0.75
PF13417	GST_N_3	0.75
PF09339	HTH_IclR	0.75
PF07883	Cupin_2	0.75
PF05711	TylF	0.75
PF14361	RsbRD_N	0.75
PF12006	DUF3500	0.75
PF07690	MFS_1	0.75
PF07209	DUF1415	0.75
PF13442	Cytochrome_CBB3	0.75
PF10756	bPH_6	0.75
PF13517	FG-GAP_3	0.75
PF00589	Phage_integrase	0.75
PF00378	ECH_1	0.75
PF13360	PQQ_2	0.75
PF09836	DUF2063	0.75
PF05050	Methyltransf_21	0.75
PF13579	Glyco_trans_4_4	0.75
PF01741	MscL	0.75
PF00440	TetR_N	0.75
PF07859	Abhydrolase_3	0.75
PF12802	MarR_2	0.75
PF03551	PadR	0.75
PF04151	PPC	0.75
PF00662	Proton_antipo_N	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	5.97
COG1009	Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit	Energy production and conversion [C]	1.49
COG1671	Uncharacterized conserved protein YaiI, UPF0178 family	Function unknown [S]	1.49
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	1.49
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	1.49
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	1.49
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.75
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.75
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.75
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.75
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.75
COG3310	Uncharacterized conserved protein, DUF1415 family	Function unknown [S]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
All Organisms	root	All Organisms	39.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
cellular organisms	root	All Organisms → cellular organisms	39.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.64 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.48 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.24 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.24 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.24 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	2.99 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.49 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.75 %
Holosporales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales	0.75 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.24 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2.99 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	1.49 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.49 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.75 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.75 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.75 %
Candidatus Paracaedibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	0.75 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2.24 %
unclassified Burkholderiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae	1.49 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.49 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.49 %
Klebsiella/Raoultella group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.75 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.75 %
Sphingopyxis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis	0.75 %
Candidatus Odyssella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella	0.75 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1.49 %
Sphingomonas asaccharolytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas asaccharolytica	1.49 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.49 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.49 %
Paraburkholderia youngii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia youngii	0.75 %
unclassified Candidatus Odyssella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella	0.75 %
unclassified Sphingopyxis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → unclassified Sphingopyxis	0.75 %
Klebsiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella	0.75 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1.49 %
Sphingomonas asaccharolytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas asaccharolytica	1.49 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.49 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.49 %
Candidatus Odyssella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella → Candidatus Odyssella sp.	0.75 %
Sphingopyxis sp. H100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → unclassified Sphingopyxis → Sphingopyxis sp. H100	0.75 %
Klebsiella pneumoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	0.75 %
Paraburkholderia youngii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia youngii	0.75 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1.49 %
Sphingomonas asaccharolytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas asaccharolytica	1.49 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.49 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.49 %
Klebsiella pneumoniae subsp. pneumoniae	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae → Klebsiella pneumoniae subsp. pneumoniae	0.75 %
Candidatus Odyssella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella → Candidatus Odyssella sp.	0.75 %
Sphingopyxis sp. H100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → unclassified Sphingopyxis → Sphingopyxis sp. H100	0.75 %
Paraburkholderia youngii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia youngii	0.75 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.73 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1.49 %
Sphingomonas asaccharolytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas asaccharolytica	1.49 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.49 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.49 %
Klebsiella pneumoniae subsp. pneumoniae DSM 30104 = JCM 1662 = NBRC 14940	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae → Klebsiella pneumoniae subsp. pneumoniae → Klebsiella pneumoniae subsp. pneumoniae DSM 30104 = JCM 1662 = NBRC 14940	0.75 %
Candidatus Odyssella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella → Candidatus Odyssella sp.	0.75 %
Sphingopyxis sp. H100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → unclassified Sphingopyxis → Sphingopyxis sp. H100	0.75 %
Paraburkholderia youngii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia youngii	0.75 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11618260	Not Available	716	Open in IMG/M
3300000956\|JGI10216J12902_100683180	Not Available	719	Open in IMG/M
3300000956\|JGI10216J12902_101360032	All Organisms → cellular organisms → Bacteria	3433	Open in IMG/M
3300000956\|JGI10216J12902_103969543	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300004114\|Ga0062593_100509626	Not Available	1118	Open in IMG/M
3300004114\|Ga0062593_101816609	Not Available	670	Open in IMG/M
3300004463\|Ga0063356_101922561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	893	Open in IMG/M
3300004463\|Ga0063356_103753340	Not Available	654	Open in IMG/M
3300005093\|Ga0062594_101013886	All Organisms → cellular organisms → Bacteria → Proteobacteria	800	Open in IMG/M
3300005093\|Ga0062594_101195642	Not Available	753	Open in IMG/M
3300005183\|Ga0068993_10170912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	743	Open in IMG/M
3300005295\|Ga0065707_10439871	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300005334\|Ga0068869_100186605	All Organisms → cellular organisms → Bacteria → Proteobacteria	1628	Open in IMG/M
3300005335\|Ga0070666_10009048	All Organisms → cellular organisms → Bacteria	6205	Open in IMG/M
3300005341\|Ga0070691_10537932	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300005343\|Ga0070687_101018855	Not Available	601	Open in IMG/M
3300005356\|Ga0070674_101703093	Not Available	570	Open in IMG/M
3300005458\|Ga0070681_11008372	Not Available	752	Open in IMG/M
3300005459\|Ga0068867_101687481	Not Available	594	Open in IMG/M
3300005563\|Ga0068855_100480287	Not Available	1353	Open in IMG/M
3300005836\|Ga0074470_10057291	All Organisms → cellular organisms → Bacteria	3687	Open in IMG/M
3300005836\|Ga0074470_11310294	All Organisms → cellular organisms → Bacteria → Proteobacteria	148614	Open in IMG/M
3300005841\|Ga0068863_100045622	All Organisms → cellular organisms → Bacteria	4159	Open in IMG/M
3300005844\|Ga0068862_101736489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas asaccharolytica	633	Open in IMG/M
3300006237\|Ga0097621_100187907	Not Available	1788	Open in IMG/M
3300006844\|Ga0075428_100008515	All Organisms → cellular organisms → Bacteria	11379	Open in IMG/M
3300006846\|Ga0075430_101141865	Not Available	642	Open in IMG/M
3300006876\|Ga0079217_11115639	Not Available	591	Open in IMG/M
3300006894\|Ga0079215_10276046	Not Available	910	Open in IMG/M
3300006954\|Ga0079219_12520249	Not Available	500	Open in IMG/M
3300007004\|Ga0079218_10018163	All Organisms → cellular organisms → Bacteria → Proteobacteria	3745	Open in IMG/M
3300007004\|Ga0079218_10057656	Not Available	2452	Open in IMG/M
3300007004\|Ga0079218_13962342	Not Available	503	Open in IMG/M
3300007076\|Ga0075435_100548157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	1001	Open in IMG/M
3300009100\|Ga0075418_10059095	All Organisms → cellular organisms → Bacteria	4096	Open in IMG/M
3300009156\|Ga0111538_12774983	Not Available	614	Open in IMG/M
3300009678\|Ga0105252_10019859	Not Available	2405	Open in IMG/M
3300009678\|Ga0105252_10348205	Not Available	671	Open in IMG/M
3300010399\|Ga0134127_13123633	Not Available	541	Open in IMG/M
3300010400\|Ga0134122_10710295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae → Klebsiella pneumoniae subsp. pneumoniae → Klebsiella pneumoniae subsp. pneumoniae DSM 30104 = JCM 1662 = NBRC 14940	946	Open in IMG/M
3300010403\|Ga0134123_10837989	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300010403\|Ga0134123_12552636	Not Available	577	Open in IMG/M
3300011397\|Ga0137444_1024327	Not Available	867	Open in IMG/M
3300011407\|Ga0137450_1056534	Not Available	727	Open in IMG/M
3300011413\|Ga0137333_1135585	Not Available	566	Open in IMG/M
3300011417\|Ga0137326_1159400	Not Available	521	Open in IMG/M
3300011432\|Ga0137428_1104460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia youngii	807	Open in IMG/M
3300011433\|Ga0137443_1090345	Not Available	873	Open in IMG/M
3300011435\|Ga0137426_1197177	Not Available	600	Open in IMG/M
3300011436\|Ga0137458_1234396	Not Available	558	Open in IMG/M
3300011445\|Ga0137427_10313694	Not Available	660	Open in IMG/M
3300012133\|Ga0137329_1045370	Not Available	570	Open in IMG/M
3300012212\|Ga0150985_104940308	Not Available	1337	Open in IMG/M
3300012231\|Ga0137465_1208558	Not Available	585	Open in IMG/M
3300012469\|Ga0150984_119287157	Not Available	858	Open in IMG/M
3300012893\|Ga0157284_10224323	Not Available	579	Open in IMG/M
3300012895\|Ga0157309_10222803	Not Available	602	Open in IMG/M
3300012910\|Ga0157308_10004517	All Organisms → cellular organisms → Bacteria	2663	Open in IMG/M
3300012944\|Ga0137410_10624698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	892	Open in IMG/M
3300012986\|Ga0164304_10540867	Not Available	858	Open in IMG/M
3300012987\|Ga0164307_10823960	Not Available	740	Open in IMG/M
3300012987\|Ga0164307_11088111	Not Available	656	Open in IMG/M
3300014269\|Ga0075302_1196296	Not Available	514	Open in IMG/M
3300014307\|Ga0075304_1138263	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300014868\|Ga0180088_1035803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella → Candidatus Odyssella sp.	826	Open in IMG/M
3300015245\|Ga0137409_10000124	All Organisms → cellular organisms → Bacteria → Proteobacteria	72265	Open in IMG/M
3300015245\|Ga0137409_10643344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	892	Open in IMG/M
3300015371\|Ga0132258_10140767	All Organisms → cellular organisms → Bacteria → Proteobacteria	5772	Open in IMG/M
3300018422\|Ga0190265_10365548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1533	Open in IMG/M
3300018422\|Ga0190265_11659576	Not Available	750	Open in IMG/M
3300018429\|Ga0190272_10969968	Not Available	807	Open in IMG/M
3300018432\|Ga0190275_11776813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	695	Open in IMG/M
3300018466\|Ga0190268_11174090	Not Available	633	Open in IMG/M
3300018469\|Ga0190270_10306606	Not Available	1418	Open in IMG/M
3300018476\|Ga0190274_10598057	Not Available	1128	Open in IMG/M
3300018476\|Ga0190274_11046829	Not Available	893	Open in IMG/M
3300018476\|Ga0190274_12330770	Not Available	632	Open in IMG/M
3300018481\|Ga0190271_10045001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3707	Open in IMG/M
3300018481\|Ga0190271_10219147	Not Available	1912	Open in IMG/M
3300019356\|Ga0173481_10002929	All Organisms → cellular organisms → Bacteria → Proteobacteria	4369	Open in IMG/M
3300019361\|Ga0173482_10587418	Not Available	557	Open in IMG/M
3300019377\|Ga0190264_10245105	Not Available	1034	Open in IMG/M
3300019377\|Ga0190264_10363235	Not Available	917	Open in IMG/M
3300019880\|Ga0193712_1119300	Not Available	559	Open in IMG/M
3300022915\|Ga0247790_10007058	All Organisms → cellular organisms → Bacteria → Proteobacteria	2222	Open in IMG/M
3300025900\|Ga0207710_10125134	Not Available	1231	Open in IMG/M
3300025918\|Ga0207662_10550246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas asaccharolytica	799	Open in IMG/M
3300025918\|Ga0207662_10706208	Not Available	707	Open in IMG/M
3300025926\|Ga0207659_11374660	Not Available	605	Open in IMG/M
3300025934\|Ga0207686_10647954	Not Available	835	Open in IMG/M
3300025936\|Ga0207670_10012001	All Organisms → cellular organisms → Bacteria → Proteobacteria	5049	Open in IMG/M
3300025936\|Ga0207670_10916436	Not Available	735	Open in IMG/M
3300025936\|Ga0207670_11785588	Not Available	523	Open in IMG/M
3300025942\|Ga0207689_10606421	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300025972\|Ga0207668_11179209	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300026067\|Ga0207678_10839782	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300026075\|Ga0207708_10840268	Not Available	792	Open in IMG/M
3300026075\|Ga0207708_11839713	Not Available	531	Open in IMG/M
3300026089\|Ga0207648_10040986	All Organisms → cellular organisms → Bacteria → Proteobacteria	4067	Open in IMG/M
3300026118\|Ga0207675_101416013	Not Available	716	Open in IMG/M
3300026118\|Ga0207675_101461433	Not Available	704	Open in IMG/M
3300027462\|Ga0210000_1030621	Not Available	841	Open in IMG/M
3300027573\|Ga0208454_1000388	All Organisms → cellular organisms → Bacteria	26271	Open in IMG/M
3300027876\|Ga0209974_10087299	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300027886\|Ga0209486_10021700	All Organisms → cellular organisms → Bacteria → Acidobacteria	3008	Open in IMG/M
3300028587\|Ga0247828_10468217	Not Available	742	Open in IMG/M
3300028812\|Ga0247825_11090566	Not Available	581	Open in IMG/M
3300031854\|Ga0310904_10520967	Not Available	800	Open in IMG/M
3300031908\|Ga0310900_10342113	Not Available	1116	Open in IMG/M
3300031908\|Ga0310900_10878601	Not Available	730	Open in IMG/M
3300031911\|Ga0307412_10508229	Not Available	1004	Open in IMG/M
3300031940\|Ga0310901_10480086	Not Available	554	Open in IMG/M
3300032012\|Ga0310902_10281363	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300032012\|Ga0310902_10568814	Not Available	749	Open in IMG/M
3300032013\|Ga0310906_10067073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1845	Open in IMG/M
3300032144\|Ga0315910_10002988	All Organisms → cellular organisms → Bacteria → Proteobacteria	14571	Open in IMG/M
3300032144\|Ga0315910_10377546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → unclassified Sphingopyxis → Sphingopyxis sp. H100	1083	Open in IMG/M
3300032144\|Ga0315910_10377574	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300032144\|Ga0315910_10510000	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300032144\|Ga0315910_11092887	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300032144\|Ga0315910_11134525	Not Available	610	Open in IMG/M
3300032157\|Ga0315912_10004509	All Organisms → cellular organisms → Bacteria	13186	Open in IMG/M
3300032157\|Ga0315912_10059038	All Organisms → cellular organisms → Bacteria → Acidobacteria	3028	Open in IMG/M
3300032157\|Ga0315912_10077007	All Organisms → cellular organisms → Bacteria → Proteobacteria	2619	Open in IMG/M
3300032157\|Ga0315912_10290999	Not Available	1287	Open in IMG/M
3300032157\|Ga0315912_10431234	Not Available	1045	Open in IMG/M
3300032157\|Ga0315912_10861995	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300032179\|Ga0310889_10223054	Not Available	881	Open in IMG/M
3300032180\|Ga0307471_101660662	Not Available	794	Open in IMG/M
3300032205\|Ga0307472_100910245	Not Available	815	Open in IMG/M
3300032211\|Ga0310896_10639272	Not Available	597	Open in IMG/M
3300032211\|Ga0310896_10672170	Not Available	584	Open in IMG/M
3300032955\|Ga0335076_10273999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1580	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.87%
Host-Associated	Host-Associated	23.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.43%
Plants	Host-Associated → Plants	23.13%
Aquatic	Environmental → Aquatic	13.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.43%
Sediment	Environmental → Aquatic → Sediment	12.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.45%
Marine	Environmental → Aquatic → Marine	0.75%
Roots	Host-Associated → Plants → Roots	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.45%
Loam	Environmental → Terrestrial → Soil → Loam	7.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.49%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.75%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.49%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.37%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	11.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.22%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.24%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.49%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.49%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.49%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011397	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT319_2	Environmental	Open in IMG/M
3300011407	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012133	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014307	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D1	Environmental	Open in IMG/M
3300014868	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT830_16_10D	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027462	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes)	Host-Associated	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_116182601	3300000787	Soil	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKXETTPSSIETFTSTAXKYXALXXRIQRLKEXGAX*
JGI10216J12902_1006831802	3300000956	Soil	LVPCHFTVEDLQLIEWSCREKAQRARADAKRDSTPSTVETFTSSATKYEALALRIQRLKELGAR*
JGI10216J12902_1013600323	3300000956	Soil	MSNSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARSDAKRDTTPSSIEAFTSTATKYEALASRIQRLKELGTR*
JGI10216J12902_1039695433	3300000956	Soil	MPTSSAKPRLVPCHLTVEDLQLIEWSCREKAQRARSDAKQETSPSSIETFTSTAAKYDALATRIQRLKELGSR*
Ga0062593_1005096261	3300004114	Soil	MPTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0062593_1018166091	3300004114	Soil	MTTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKDAKSDATPSSIETFTATATKYEALALRIQRLKELGTR*
Ga0063356_1019225612	3300004463	Arabidopsis Thaliana Rhizosphere	MTTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKDAKSDATPSSIETFTSTATKYEALALRIQRLKELGTR*
Ga0063356_1037533401	3300004463	Arabidopsis Thaliana Rhizosphere	RWPHTGRMSTSSAKPKLVPCHFTFEDLQLIEWACREKAQRARSDAKRETTPSSIETFTSSATKYEALAIRIQRLKELGAR*
Ga0062594_1010138863	3300005093	Soil	RLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALALRIQRLKEVGTR*
Ga0062594_1011956422	3300005093	Soil	MSTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0068993_101709123	3300005183	Natural And Restored Wetlands	MPTSSAKPRLVPCHFTVDDLQLIEWSCREKAQRARNDAKRDTTPSSIETFTSTAAKYEALAIRIQRLKELGVR*
Ga0065707_104398712	3300005295	Switchgrass Rhizosphere	MPTSTPKPKLVPCHFTFEDLQLIEWSCREKAQRARRDAKSETTPSSIETFTSTATKYEALANRIQRLKELGAR*
Ga0068869_1001866051	3300005334	Miscanthus Rhizosphere	MPTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALALRIQRLKEVGTR*
Ga0070666_100090485	3300005335	Switchgrass Rhizosphere	MSTSPAKPRLVPCHFTADDLQLIEWACREKAQRARKDAQRDDTPSSIETFASSATKYEALAIRIQRLKELGTR*
Ga0070691_105379321	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	HFTVEDLQLIEWSCREKAQRARKDAKSDATPSSIETFTATATKYEALALRIQRLKELGTR
Ga0070687_1010188551	3300005343	Switchgrass Rhizosphere	CHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0070674_1017030932	3300005356	Miscanthus Rhizosphere	MPTSSAKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALASRIQRLKEVGAR*
Ga0070681_110083721	3300005458	Corn Rhizosphere	MPTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0068867_1016874812	3300005459	Miscanthus Rhizosphere	PRWHTGYMPTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALALRIQRLKEVGTR*
Ga0068855_1004802871	3300005563	Corn Rhizosphere	MSTSPAKPRLVPCHFTADDLQLIEWACREKAQRARKDAQRDDTPSSIETFASTATKYEALAIRIQRLKELGTR*
Ga0074470_100572911	3300005836	Sediment (Intertidal)	MPNSTTKPKLVPCHFTVEDLQLIEWSCREKALRARADAKRETTPSSIETFTSTAMKYDALVARIQRLKELGR*
Ga0074470_11310294117	3300005836	Sediment (Intertidal)	MSTSPAKPRLVPCHFTVDDLQLIEWSCREKAQRARTDAKRDATPSSIETSTSTATKYEVLASRIQRLKELGMR*
Ga0068863_1000456226	3300005841	Switchgrass Rhizosphere	MSTSPAKPRLVPCHFTADDLQLIEWACREKAQRARKDAQRDDTPSSVETFASTATKYEALAIRIQRLKELGTR*
Ga0068862_1017364891	3300005844	Switchgrass Rhizosphere	PCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALALRIQRLKEVGTR*
Ga0097621_1001879071	3300006237	Miscanthus Rhizosphere	MPTSSAKQKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAARIQRLKEIGAR*
Ga0075428_10000851513	3300006844	Populus Rhizosphere	MLGWIAKTRHTGHMPTSSAKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0075430_1011418652	3300006846	Populus Rhizosphere	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALASRIQRLKEIGAR*
Ga0079217_111156391	3300006876	Agricultural Soil	MPTSSAKPKLVPCHFTFEDLQLIEWACREKAQRARGDAKRETTPSSIETFTSTATKYEALASRIQRLKETGAR*
Ga0068865_1014802021	3300006881	Miscanthus Rhizosphere	MPTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTS
Ga0079215_102760461	3300006894	Agricultural Soil	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETYTSTATKYEALAGRIQRLKEIGAR*
Ga0079219_125202491	3300006954	Agricultural Soil	MPTSPPKPRLVPCHFTVEDLQLIEWACREKAQRARGDAKRETTPSSIETFTSTAAKYEALAVRIQRLKEIGR*
Ga0079218_100181631	3300007004	Agricultural Soil	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALASRIQRLKEIGR*
Ga0079218_100576567	3300007004	Agricultural Soil	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKREATPSSIETYTSTATKYEALASRIQRLKELGAR*
Ga0079218_139623422	3300007004	Agricultural Soil	VFPGPHPLRQIFLMLGVGLTKIWHTGYMPTSSAKPRLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETYTSTATKYEALATRIQRLKELGAR*
Ga0075435_1005481571	3300007076	Populus Rhizosphere	MPTSSPAKPRLVPCHFTVEDLQHIEWACREKAQRARKDAKSEATPSSIATFTSTAEKYEALALRIQRLKELGTR*
Ga0075418_100590953	3300009100	Populus Rhizosphere	MPTSSAKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0111538_127749832	3300009156	Populus Rhizosphere	PTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARSDAKRDTTPSSIETFTSTATKYEALALRIQRLKELGAR*
Ga0105252_100198594	3300009678	Soil	MSTSSAKPRLVPCHFTVEDLQLIEWSCREKALRARNDAKRDTTPSSIEAFTSSATKYEALAGRIQRLKELGR*
Ga0105252_103482051	3300009678	Soil	MSTSSSAKPRLVPCHLTVEDLQLIEWSCREKALRARNDAKQDTTPSSIETFTSTATKYEALAIRIQRLKELGAR*
Ga0134127_131236332	3300010399	Terrestrial Soil	MSTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTAAKYEALAGRIQRLKEIGAR*
Ga0134122_107102951	3300010400	Terrestrial Soil	MSTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIDTLTSTATKYEALASRIQRLKEIGAR*
Ga0134123_108379891	3300010403	Terrestrial Soil	SSAKPRLVPCHFTVDDLQLIEWSCREKAQRARKDAKSDATPSSIETFTSTATKYEALALRIQRLKELGTR*
Ga0134123_125526361	3300010403	Terrestrial Soil	PRLVPCHFTVEDLQLIEWSCREKAQRSRKDAKSEATPSSIETFTATATKYEALALRIQRLKELGTRS*
Ga0137444_10243272	3300011397	Soil	MSTSSAKPRLVPCHFTVEDLQLIEWSCREKALRARNDAKRDTTPSSIEAFTSTATKYEALAIRIQRLKELGAR*
Ga0137450_10565342	3300011407	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKHDTTPSSIEAFTSTATKYEALAIRIQRLKELGAR*
Ga0137333_11355851	3300011413	Soil	MPTSSTKPRLVPCHFTVEDLQLIEWSCREKAQRARKDAKSETTPSSIEAFTSTATKYEALASRIQRLKELGR*
Ga0137326_11594001	3300011417	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNEAKQDTTPSSIETFTSTATKYDALAIRIQRLKELGR*
Ga0137428_11044602	3300011432	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKNDTTPSSIEAFTSTATKYDALASRIQRLKEIGAR*
Ga0137443_10903452	3300011433	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKREATPSSIETFTSTATKYEALAIRIQRLKELGAR*
Ga0137426_11971772	3300011435	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKALRARNDAKRDTTPSSIEAFTSSATKYEALAGRIQRLKELGR*
Ga0137458_12343962	3300011436	Soil	VPCHFTVEDLQLIEWSCREKAQRARNDAKHDTTPSSIEAFTSTATKYEALAIRIQRLKELGAR*
Ga0137427_103136941	3300011445	Soil	LAEIWHTGSMPTSSAKPRLVPCHFTVEDLQLIEWSCREKALRARNDAKQDTTPSSIETFTSTATKYEALAIRIQRLKELGAR*
Ga0137329_10453702	3300012133	Soil	STSSSGKPRLVPCHFTVEDLQLIEWSCREKALRARNDAKRDTTPSSIEAFTSSATKYEALAGRIQRLKELGR*
Ga0150985_1049403082	3300012212	Avena Fatua Rhizosphere	STLPAKPRLVPCHFTADDLQLIEWACREKAHRARNDAKREETPSSIETFTSTATKYEALASRIQRLKELGAR*
Ga0137465_12085581	3300012231	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKALRARNDAKRDTTPSSIEAFTSTATKYEALASRIQRLKELGR*
Ga0150984_1192871571	3300012469	Avena Fatua Rhizosphere	MPTSSAKPKLVPCHFTFEDLQLIEWACREKAQRARSDAKREATPSSIETFTSSATKYEALAIRIQRLKELGAR*
Ga0157284_102243232	3300012893	Soil	LVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0157309_102228031	3300012895	Soil	TSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0157308_100045174	3300012910	Soil	VLGWIAKTRHTGYMPTSSAKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0137410_106246981	3300012944	Vadose Zone Soil	MSTSPPKPRLIPCHFTVDDLQLIEWACREKAQRARTDAKRDETPSSIETFTSTATKYEALASRIQRLKELGAR*
Ga0164304_105408672	3300012986	Soil	MSTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKRDTTPSSIEAFTSSATKYEALAGRIQRLKELGR*
Ga0164307_108239601	3300012987	Soil	MSTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKRDTTPSSIEAFTSSATKYEALAARIQRLKELGR*
Ga0164307_110881112	3300012987	Soil	MPTSSAKQKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAARIQRLKEIGAS*
Ga0075302_11962961	3300014269	Natural And Restored Wetlands	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRESTPSSIETFTSTATKYEALVTRIQRLKELGAR*
Ga0075304_11382632	3300014307	Natural And Restored Wetlands	PTAKPKLVPCHLTVEDLQLIEWSCREKAQRARKDAMNETTPSSIEAFTSTATKYEALVSRIQRLKELGR*
Ga0180088_10358032	3300014868	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKRDTTPSSIETFTSTATKYEALASRIQRLKELSARLSQAPSGPDRTGSCT
Ga0137409_1000012426	3300015245	Vadose Zone Soil	MPTSSPAKPKLVPCHFTFEDLQLLEWSCREKAQRARTAAKSDTTPSSIETFMSSATKYEALASRIQRLKELGAR*
Ga0137409_106433441	3300015245	Vadose Zone Soil	MSTSPTKPRLVPCHFTADDLQLIEWACREKAQRARTDPKRDETPSSIETFTSTATKYEALASRIQRLKELGAR*
Ga0132258_101407674	3300015371	Arabidopsis Rhizosphere	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR*
Ga0190265_103655482	3300018422	Soil	MSTSSAKSKLVPCHFTFEDLQLMEWSCREKAQRARNEAKSETTPSSIEAFTSTATKYEALVSRIQRLKELGAR
Ga0190265_116595761	3300018422	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKDAKADTTPSSIEAFTSTATKYEALATRIQRLKELGAR
Ga0190272_109699682	3300018429	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARSDAKNDTTPSSIEAFTSTATKYEALASRIQRLKEVGAR
Ga0190275_117768131	3300018432	Soil	MTTSSAKSKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRDTTPSSIEAFTSTATKYDALVVR
Ga0190268_111740902	3300018466	Soil	MTTSPAKPKLVPCHFTVEDLQLIEWSCREKAQRARSDAKRETAPSSIETFTSTATKYEALAIRIQRLKEIGR
Ga0190270_103066063	3300018469	Soil	MTTSSAKPKLVPCHFTVEDLQLIEWSCREKAQRARSDAKRETTPSSIEAFTSTAAKYEALVGRITRLKEIGR
Ga0190274_105980573	3300018476	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARSEAKRDTTPSSIETFTSTATKYEALASRIQRLKELGAR
Ga0190274_110468291	3300018476	Soil	MPISSAKPRLVPCHFTVEDLQLIEWACREKAQRARNEAKHDTTPSSIETFTSTATKYEALASRIQRLKELGAR
Ga0190274_123307701	3300018476	Soil	MPTSSAKPRLVPCHFTVEDLQLIEWACREKVQRARNDAKRETTPSSIETFASTATKYEALASRIQRLKEL
Ga0190271_100450014	3300018481	Soil	MTTSSTKPRLVPCHFTVEDLQLLEWSCREKAQRARTEAKHESTPSSVETFTSTAAKYEALAGRIQRLKEVGAR
Ga0190271_102191474	3300018481	Soil	GSAKIWHTGQMPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKRDETPSSIETFTSTATKYEALASRIQRLKELGAR
Ga0173481_100029292	3300019356	Soil	MPTSSAKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0173482_105874182	3300019361	Soil	MSTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0190264_102451052	3300019377	Soil	MSTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARTEAKQNTTPSSIETFTTTATKYEALALRIQRLKELGAR
Ga0190264_103632351	3300019377	Soil	AVSGGTIVSVLGSGLRNSAYSTMSTSPAKPRLVPCHLTVEDLQLIEWACREKAQRARSEAKRETTPSSIETFTSSATKYEALAARIQRLKELGAR
Ga0193712_11193001	3300019880	Soil	MPTPSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKNDTTPSSIETFMSSATKYEALASRIQRLKELAAR
Ga0247790_100070584	3300022915	Soil	VLGWIAKTRHTGYMPTSSAKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0207710_101251341	3300025900	Switchgrass Rhizosphere	MSTSPAKPRLVPCHFTADDLQLIEWACREKAQRARKDAQRDDTPSSIETFASSATKYEALAIRIQRLKELGTR
Ga0207662_105502463	3300025918	Switchgrass Rhizosphere	MPTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALALRIQRLKEVGTR
Ga0207662_107062081	3300025918	Switchgrass Rhizosphere	MSTSPAKPRLVPCHFTADDLQLIEWACREKAQRARKDAQRDDTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0207659_113746601	3300025926	Miscanthus Rhizosphere	MSTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALASRIQRLKEVGAR
Ga0207686_106479542	3300025934	Miscanthus Rhizosphere	MSTSPAKPRLVPCHFTADDLQLIEWACREKAQRARKDAKQDSTPSSIETFTATATKYEALAIRIQRLKELGAR
Ga0207670_100120014	3300025936	Switchgrass Rhizosphere	MSTSPAKPRLVPCHFTADDLQLIEWACREKAQRARKDAQRDGTPSSVETFASTATKYEALAIRIQRLKELGTR
Ga0207670_109164363	3300025936	Switchgrass Rhizosphere	MSTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTAAKYEALAGRIQRLKEIGAR
Ga0207670_117855882	3300025936	Switchgrass Rhizosphere	MTTSSPAKPRLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALALRIQRLKEVGTR
Ga0207689_106064212	3300025942	Miscanthus Rhizosphere	VAKDLAYWAMTTSSAKPKLVPCHFTVEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0207668_111792092	3300025972	Switchgrass Rhizosphere	MPTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0207678_108397821	3300026067	Corn Rhizosphere	MPTSSAKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFASSATKYEALAIRIQRLKELGTR
Ga0207708_108402682	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MTTSSSAKPRLVPCHFTVDDLQLIEWSCREKAQRARKDAKSDATPSSIETFTSTATKYEALALRIQRLKELGTR
Ga0207708_118397131	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	KPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0207648_100409864	3300026089	Miscanthus Rhizosphere	MTSSSPAKPRLVPCHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALALRIQRLKEVGTR
Ga0207675_1014160132	3300026118	Switchgrass Rhizosphere	MSTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAG
Ga0207675_1014614331	3300026118	Switchgrass Rhizosphere	MPTSSAKPRLVPCHFTADDLQLIEWACREKAQRARKDAQRDDTPSSIETFASSATKYEALAIRIQRLKELGTR
Ga0210000_10306213	3300027462	Arabidopsis Thaliana Rhizosphere	KIWHTGSMTTSSSAKPRLVPCHFTVDDLQLIEWSCREKAQRARKDAKSDATPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0208454_100038812	3300027573	Soil	MSTSSAKPRLVPCHFTVEDLQLIEWSCREKALRARNDAKRDTTPSSIEAFTSSATKYEALAGRIQRLKELGR
Ga0209974_100872992	3300027876	Arabidopsis Thaliana Rhizosphere	MTTSSSAKPRLVPCHFTVDDLQLIEWSCREKAQRARKDAKSDATPSSIETFTATATKYEALALRIQRLKELGTR
Ga0209486_100217002	3300027886	Agricultural Soil	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKREATPSSIETYTSTATKYEALASRIQRLKELGAR
Ga0247828_104682172	3300028587	Soil	MPTSTPKPKLVPCHFTFEDLQLIEWSCREKAQRARRDAKSETTPSSIETFTSTATKYEALANRIQRLKELGAR
Ga0247825_110905661	3300028812	Soil	MPTSSGKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETAPSSIETFTSTATKYEALASRIQRLKEI
Ga0310904_105209672	3300031854	Soil	MPTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0310900_103421134	3300031908	Soil	HTAWMPTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0310900_108786013	3300031908	Soil	SAKPRLVPSHFTVEDLQLIEWSCREKAQRARKEAKNEATPSSIETFTSTATKYEALALRIQRLKEVGTR
Ga0307412_105082292	3300031911	Rhizosphere	MPTSAAKPRLVPCHFTVEDLQLIEWACREKAQRARSDAKRDTTPSSIEAFTSTATKYEALAVRIQRLKELGAR
Ga0310901_104800861	3300031940	Soil	TTRAPGRASHDYWHTAWMPTSSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0310902_102813631	3300032012	Soil	MPTSSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKDAKSEATPSSIETFTATATKYEALALRIQRLKELGTRS
Ga0310902_105688142	3300032012	Soil	MPTSSAKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAARIQRLKEIGAR
Ga0310906_100670732	3300032013	Soil	AKPRLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0315910_1000298813	3300032144	Soil	MTTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSSATKYEALASRIQRLKELGAR
Ga0315910_103775461	3300032144	Soil	KPKLVPCHFTFEDLQLIEWACREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRVQRLKEIGAR
Ga0315910_103775741	3300032144	Soil	REACIAESRPIRRAEIWHTGSMSTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARKDAKNETTPSSIEAFTSTATKYEALAIRIQRLKELGTR
Ga0315910_105100002	3300032144	Soil	MSNATAKPKLVPCHFTVEDLQLIEWSCREKAQRARKDAKNETTPSSIEAFTSTATKYEALVSRIQRLKELGR
Ga0315910_110928871	3300032144	Soil	MTTSIAKPKLVPCHFTFEDLQLIEWSCREKAQRARSEAKRETTPSSIETFMSSATKYEALASRVQRLKELGAR
Ga0315910_111345252	3300032144	Soil	MPTSSAKPRLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0315912_100045094	3300032157	Soil	MPTSSAKPRLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTAAKYEALASRIQRLKEIGAS
Ga0315912_100590383	3300032157	Soil	TGAMPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSEAKRETTPSSVETFTSTATKYEALATRIQRLKELGAR
Ga0315912_100770073	3300032157	Soil	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSTAAKYDALVSRIQRLKEIGAS
Ga0315912_102909992	3300032157	Soil	MPTSSAKPRLVPCHFTFEDLQLLEWSYREKAQRAGGDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0315912_104312342	3300032157	Soil	MTTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARSDAKRETTPSSIETFTSSATKYEALASRIQRLKELG
Ga0315912_108619951	3300032157	Soil	MTTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARGDAKRETTPSSIETFTSTAAKYEALASRIQRLKELGAR
Ga0310889_102230543	3300032179	Soil	SSAKPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0307471_1016606622	3300032180	Hardwood Forest Soil	MPTSSAKPKLVPCHFTFEDLQLIEWSCREKAQRARKDAKSDSTPSSIEAFTATATKYEALALRIQRLKELGTR
Ga0307472_1009102452	3300032205	Hardwood Forest Soil	VRSPFPTIGAYFEVGFAKIWHTGAMSTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKRETTPSSIEAFTASATKYETLAG
Ga0310896_106392722	3300032211	Soil	EQMPTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARSDAKRDTTPSSIETFTSTATKYEALALRIQRLKELGAR
Ga0310896_106721701	3300032211	Soil	KPKLVPCHFTFEDLQLLEWSCREKAQRARSDAKRETTPSSIETFTSTATKYEALAGRIQRLKEIGAR
Ga0335076_102739991	3300032955	Soil	MSTSSAKPRLVPCHFTVEDLQLIEWSCREKAQRARNDAKRDTTPSSIEAFTSSATKYEALAGRIQRLKELGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F059091

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences