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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F059011 |
| Family Type | Metagenome |
| Number of Sequences | 134 |
| Average Sequence Length | 46 residues |
| Representative Sequence | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQNLIQ |
| Number of Associated Samples | 110 |
| Number of Associated Scaffolds | 134 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.75 % |
| % of genes near scaffold ends (potentially truncated) | 28.36 % |
| % of genes from short scaffolds (< 2000 bps) | 67.91 % |
| Associated GOLD sequencing projects | 95 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.74 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (62.687 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (13.433 % of family members) |
| Environment Ontology (ENVO) | Unclassified (60.448 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (70.149 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.68% β-sheet: 0.00% Coil/Unstructured: 51.32% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.74 |
| Powered by PDBe Molstar | |
| SCOP family | SCOP domain | Representative PDB | TM-score |
|---|---|---|---|
| a.113.1.1: DNA repair protein MutS, domain III | d1wb9a1 | 1wb9 | 0.70411 |
| a.135.1.1: Tetraspanin | d4bkha1 | 4bkh | 0.66954 |
| a.113.1.1: DNA repair protein MutS, domain III | d1ewqa1 | 1ewq | 0.6582 |
| a.124.1.0: automated matches | d5fbfa_ | 5fbf | 0.63208 |
| a.124.1.0: automated matches | d4cxpa1 | 4cxp | 0.61732 |
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| Pfam ID | Name | % Frequency in 134 Family Scaffolds |
|---|---|---|
| PF12957 | DUF3846 | 9.70 |
| PF00118 | Cpn60_TCP1 | 2.24 |
| PF04404 | ERF | 2.24 |
| PF00166 | Cpn10 | 2.24 |
| PF08299 | Bac_DnaA_C | 2.24 |
| PF08800 | VirE_N | 0.75 |
| PF08774 | VRR_NUC | 0.75 |
| PF00176 | SNF2-rel_dom | 0.75 |
| PF02195 | ParBc | 0.75 |
| COG ID | Name | Functional Category | % Frequency in 134 Family Scaffolds |
|---|---|---|---|
| COG0234 | Co-chaperonin GroES (HSP10) | Posttranslational modification, protein turnover, chaperones [O] | 2.24 |
| COG0459 | Chaperonin GroEL (HSP60 family) | Posttranslational modification, protein turnover, chaperones [O] | 2.24 |
| COG0593 | Chromosomal replication initiation ATPase DnaA | Replication, recombination and repair [L] | 2.24 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 62.69 % |
| All Organisms | root | All Organisms | 37.31 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 13.43% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 12.69% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 8.96% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 7.46% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 6.72% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 5.97% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 5.22% |
| Marine Sediment | Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment | 3.73% |
| Sackhole Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine | 3.73% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 3.73% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 3.73% |
| Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 3.73% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 2.99% |
| Marine | Environmental → Aquatic → Marine → Coastal → Sediment → Marine | 2.24% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 2.24% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 2.24% |
| Deep Ocean | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean | 1.49% |
| Surface Seawater | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater | 1.49% |
| Deep Subsurface | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface | 1.49% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 1.49% |
| Sea-Ice Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine | 1.49% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 1.49% |
| Marine Sediment | Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment | 0.75% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 0.75% |
| Marine Harbor | Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor | 0.75% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001349 | Pelagic Microbial community sample from North Sea - COGITO 998_met_10 | Environmental | Open in IMG/M |
| 3300001450 | Marine viral communities from the Pacific Ocean - LP-53 | Environmental | Open in IMG/M |
| 3300001460 | Marine viral communities from the Pacific Ocean - LP-28 | Environmental | Open in IMG/M |
| 3300001589 | Marine viral communities from the Pacific Ocean - LP-40 | Environmental | Open in IMG/M |
| 3300001941 | Marine microbial communities from Browns Bank, Gulf of Maine - GS003 | Environmental | Open in IMG/M |
| 3300004448 | Marine viral communities from Newfoundland, Canada BC-1 | Environmental | Open in IMG/M |
| 3300004460 | Marine viral communities from Newfoundland, Canada BC-1 | Environmental | Open in IMG/M |
| 3300005609 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 | Environmental | Open in IMG/M |
| 3300005612 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 | Environmental | Open in IMG/M |
| 3300006467 | Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935 | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006803 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
| 3300006868 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006919 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 | Environmental | Open in IMG/M |
| 3300006920 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 | Environmental | Open in IMG/M |
| 3300007276 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 | Environmental | Open in IMG/M |
| 3300007345 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 | Environmental | Open in IMG/M |
| 3300007538 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007540 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007647 | Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02 | Environmental | Open in IMG/M |
| 3300007708 | Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 | Environmental | Open in IMG/M |
| 3300009074 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 | Environmental | Open in IMG/M |
| 3300009076 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 | Environmental | Open in IMG/M |
| 3300009080 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 | Environmental | Open in IMG/M |
| 3300009149 | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG | Environmental | Open in IMG/M |
| 3300009428 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 | Environmental | Open in IMG/M |
| 3300009435 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 | Environmental | Open in IMG/M |
| 3300009495 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 | Environmental | Open in IMG/M |
| 3300009496 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 | Environmental | Open in IMG/M |
| 3300009512 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 | Environmental | Open in IMG/M |
| 3300010148 | Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG | Environmental | Open in IMG/M |
| 3300010296 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA | Environmental | Open in IMG/M |
| 3300010316 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA | Environmental | Open in IMG/M |
| 3300010392 | Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385 | Environmental | Open in IMG/M |
| 3300010430 | Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples | Environmental | Open in IMG/M |
| 3300010883 | western Arctic Ocean co-assembly | Environmental | Open in IMG/M |
| 3300011118 | Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG | Environmental | Open in IMG/M |
| 3300012920 | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG | Environmental | Open in IMG/M |
| 3300013010 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA | Environmental | Open in IMG/M |
| 3300017697 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) | Environmental | Open in IMG/M |
| 3300017714 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15 | Environmental | Open in IMG/M |
| 3300017737 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2) | Environmental | Open in IMG/M |
| 3300017763 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20 | Environmental | Open in IMG/M |
| 3300017781 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14 | Environmental | Open in IMG/M |
| 3300017783 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10 | Environmental | Open in IMG/M |
| 3300017786 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18 | Environmental | Open in IMG/M |
| 3300017824 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017950 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018041 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018048 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018410 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018417 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018420 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300021085 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 | Environmental | Open in IMG/M |
| 3300021185 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 | Environmental | Open in IMG/M |
| 3300021335 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540 | Environmental | Open in IMG/M |
| 3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
| 3300021959 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D | Environmental | Open in IMG/M |
| 3300021960 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D | Environmental | Open in IMG/M |
| 3300022053 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2) | Environmental | Open in IMG/M |
| 3300022913 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG | Environmental | Open in IMG/M |
| 3300022927 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG | Environmental | Open in IMG/M |
| 3300023112 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MG | Environmental | Open in IMG/M |
| 3300023210 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG | Environmental | Open in IMG/M |
| 3300023276 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MG | Environmental | Open in IMG/M |
| 3300024228 | Seawater microbial communities from Monterey Bay, California, United States - 41D | Environmental | Open in IMG/M |
| 3300024229 | Seawater microbial communities from Monterey Bay, California, United States - 54D | Environmental | Open in IMG/M |
| 3300024231 | Seawater microbial communities from Monterey Bay, California, United States - 43D | Environmental | Open in IMG/M |
| 3300024296 | Seawater microbial communities from Monterey Bay, California, United States - 36D | Environmental | Open in IMG/M |
| 3300024348 | 0.2um to 3um size fraction coassembly | Environmental | Open in IMG/M |
| 3300024519 (restricted) | Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27 | Environmental | Open in IMG/M |
| 3300025071 | Marine viral communities from the Pacific Ocean - LP-36 (SPAdes) | Environmental | Open in IMG/M |
| 3300025120 | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) | Environmental | Open in IMG/M |
| 3300025137 | Marine viral communities from the Pacific Ocean - LP-32 (SPAdes) | Environmental | Open in IMG/M |
| 3300025138 | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025168 | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) | Environmental | Open in IMG/M |
| 3300025276 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) | Environmental | Open in IMG/M |
| 3300025543 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025577 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes) | Environmental | Open in IMG/M |
| 3300025590 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420 (SPAdes) | Environmental | Open in IMG/M |
| 3300025626 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) | Environmental | Open in IMG/M |
| 3300025645 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes) | Environmental | Open in IMG/M |
| 3300025658 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025751 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025849 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes) | Environmental | Open in IMG/M |
| 3300025889 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) | Environmental | Open in IMG/M |
| 3300027206 | Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes) | Environmental | Open in IMG/M |
| 3300027758 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027788 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes) | Environmental | Open in IMG/M |
| 3300027856 (restricted) | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23 | Environmental | Open in IMG/M |
| 3300027861 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG | Environmental | Open in IMG/M |
| 3300027865 (restricted) | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21 | Environmental | Open in IMG/M |
| 3300027868 (restricted) | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22 | Environmental | Open in IMG/M |
| 3300027917 | Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes) | Environmental | Open in IMG/M |
| 3300027996 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG | Environmental | Open in IMG/M |
| 3300028396 | Seawater microbial communities from Monterey Bay, California, United States - 55D | Environmental | Open in IMG/M |
| 3300029306 | Marine harbor viral communities from the Indian Ocean - SCH3 | Environmental | Open in IMG/M |
| 3300031519 | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 | Environmental | Open in IMG/M |
| 3300031539 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 | Environmental | Open in IMG/M |
| 3300031569 | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2 | Environmental | Open in IMG/M |
| 3300031578 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 | Environmental | Open in IMG/M |
| 3300031602 | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260 | Environmental | Open in IMG/M |
| 3300031629 | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80 | Environmental | Open in IMG/M |
| 3300031658 | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78 | Environmental | Open in IMG/M |
| 3300031669 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-1 | Environmental | Open in IMG/M |
| 3300031673 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-3 | Environmental | Open in IMG/M |
| 3300031766 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515 | Environmental | Open in IMG/M |
| 3300031851 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515 | Environmental | Open in IMG/M |
| 3300033742 | Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI20160J14292_1000019663 | 3300001349 | Pelagic Marine | MNNEIKLIENALRKQRDRTATFSDISFLIKKEAQYGTLNTRVIKNIIQ* |
| JGI24006J15134_1000565716 | 3300001450 | Marine | METEITKINQALKRQRERKASFQDIEYLIRKQMQYGTLNTRIIQTLIQ* |
| JGI24006J15134_100747843 | 3300001450 | Marine | MTTEITKIKQALKRQRERKATFEDINYLILKESQYGTLNTQIINQLIK* |
| JGI24003J15210_100145027 | 3300001460 | Marine | MNEINRIKLALKRQSERRATFEDINYLILKESKYGTLNTQIIKELIR* |
| JGI24005J15628_100379014 | 3300001589 | Marine | MTTEITKIKQALKRQRERKATFEDINYLILKESQYGTLNTRIIQNLIQ* |
| GOS2219_10174932 | 3300001941 | Marine | MNELNRINQALKRQSERKATFEDINYLILKQSQYGTLNTRIIQNLIQ* |
| Ga0065861_10167192 | 3300004448 | Marine | MEIELKKIENALRKQKNRTADFEDIEYLILKEQQYGTLNTRVINNLIN* |
| Ga0066222_10111053 | 3300004460 | Marine | MNELNRIKQALKRQSERKATFEDINYLILKESQYGTLNTRIIQNLIQ* |
| Ga0070724_101289082 | 3300005609 | Marine Sediment | MNREIKKIEQALRRQRERTATFVDIEFLIRKQRQYGTLNTRIINNLIN* |
| Ga0070723_100828201 | 3300005612 | Marine Sediment | MNREIKKIEQALRRQRERTATFVDIEFLIRKQRQYGTL |
| Ga0099972_102766788 | 3300006467 | Marine | MNKEIKKIEQALRRQRERTATFVDIEFLIRKQRQYETLNTRIINNLIN* |
| Ga0070749_100285786 | 3300006802 | Aqueous | MTTEIKLIESALKRQRERKATFEDIEFLIKKENQYGTLNTRIIQNLIQ* |
| Ga0075467_101210073 | 3300006803 | Aqueous | MTTEINKIKQALKRQRERRATFEDIEFLINKENQYGTLNTSIIKQLIQ* |
| Ga0070754_100797183 | 3300006810 | Aqueous | MTTEIIKINQALKRQRERRATFEDIEFLIKKENQYGTLNTSVIKNLIQ* |
| Ga0070754_101862253 | 3300006810 | Aqueous | MTTEINKINQALKRQRERRATFEDIEFLIKKENQYGTLNTSIIKNLIQ* |
| Ga0075481_100556721 | 3300006868 | Aqueous | KINQALKRQRERRATFEDIEFLIKKENQYGTLNTSIIKNLIQ* |
| Ga0070746_102082204 | 3300006919 | Aqueous | MTTEINKINQALKRQRERRATFEDIEFLINKENQYGTLNTNIIKQLIQ* |
| Ga0070748_10586135 | 3300006920 | Aqueous | MTTEIIKIKQALKRQRERRATFEDIEFLINKENQYGTLNTSIIKQLIQ* |
| Ga0070747_10812363 | 3300007276 | Aqueous | METEITKINQALKRQRERKASFHDIEYLIRKQMQYGTLNTRIIQTLIQ* |
| Ga0070752_10895575 | 3300007345 | Aqueous | MTTEINKINQALKRQRERRATFEDIEFLIKKENQYGTLNTSVIKNLIQ* |
| Ga0099851_10546912 | 3300007538 | Aqueous | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQNLIQ* |
| Ga0099847_11710123 | 3300007540 | Aqueous | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQ |
| Ga0099847_11797413 | 3300007540 | Aqueous | MSEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQ |
| Ga0102855_10131622 | 3300007647 | Estuarine | MNEINRIKLALKRQSERRATFEDINYLILKESQYGTLNTQIIKELIQ* |
| Ga0102859_10143528 | 3300007708 | Estuarine | MNEINRIKLALKRQSERRATFEDINYLILKESQYGTLNTQIIKELIR* |
| Ga0115549_100099623 | 3300009074 | Pelagic Marine | MKTEIIKIQNALTRQRKRTATFEDINYLIQKESQYGTLNTRIIQNLIQ* |
| Ga0115549_10969812 | 3300009074 | Pelagic Marine | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTQIIKNLIQ* |
| Ga0115550_11091172 | 3300009076 | Pelagic Marine | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTQIIQNLIQ* |
| Ga0102815_104647191 | 3300009080 | Estuarine | NALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQNLIQ* |
| Ga0114918_103179872 | 3300009149 | Deep Subsurface | LNQNKMKTEIIKIQNALTRQRNRTATFEDINYLIQKENQYGTLNTRIIKNLIQ* |
| Ga0114915_10259775 | 3300009428 | Deep Ocean | MNEIKKISQALKKQKERTATIQDINFLILKESQYGTLDTRRINQLIK* |
| Ga0115546_11640821 | 3300009435 | Pelagic Marine | IIYTMKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTQIIQNLIQ* |
| Ga0115571_13851092 | 3300009495 | Pelagic Marine | MKTEIIKIQNALTRQRKRTATFEDINYLIQKESQYGTLNTRIIKNLIQ* |
| Ga0115571_14198821 | 3300009495 | Pelagic Marine | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTR |
| Ga0115570_100469192 | 3300009496 | Pelagic Marine | MKTEIIKIQNALTRQRNRTATFEDINYLIQKENQYGTLNTRIIQNLIQ* |
| Ga0115570_101396752 | 3300009496 | Pelagic Marine | MKTEIIKIQNALTRQRNRTATFEDINYLIQKENQYGTLNTQIIKNLIQ* |
| Ga0115003_100315975 | 3300009512 | Marine | MGIELKKIENALRKQKNRTADFEDIEYLILKEQQYGTLNTRVINNLIN* |
| Ga0115003_104063383 | 3300009512 | Marine | MNEINRIELALKRQSERKATFEDINYLILKQSQYGTLNTRKIEELIC* |
| Ga0098043_11373253 | 3300010148 | Marine | METEITKINQALKRQRERKASFQDIEYLIKKERQYGTLNTRIIQNLIQ* |
| Ga0129348_12675693 | 3300010296 | Freshwater To Marine Saline Gradient | MTTEIIKINQALKRQRERRATFEDIEYLIKKENQYGTLNTSIIKQLIQ* |
| Ga0136655_100182623 | 3300010316 | Freshwater To Marine Saline Gradient | EIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQSLIQ* |
| Ga0118731_1074192583 | 3300010392 | Marine | MNKEIKKIEQALRRQRERTATFVDIEFLIRKQRQYGTLNTRIINN |
| Ga0118731_1144331631 | 3300010392 | Marine | EIKKIEQALRRQRERTATFVDIEFLIRKQRQYGTLNTRIINNLIN* |
| Ga0118733_1022916032 | 3300010430 | Marine Sediment | MKTEITKINQALKRQRERKASFHDIEYLIKKQMQYGTLNTRIIQTLIQ* |
| Ga0118733_1086102733 | 3300010430 | Marine Sediment | MNKEIKKIEQALRRQRERTATFVDIEFLIRKQRQYGTLNTRII |
| Ga0133547_103882971 | 3300010883 | Marine | IENALRKQKNRTADFEDIEYLILKEQQYGTLNTRVINNLIN* |
| Ga0133547_107316124 | 3300010883 | Marine | MNSEIKKISQALKKQKNRTATFEDINFLILKESQYGTLNTQIINQLIK* |
| Ga0133547_112487194 | 3300010883 | Marine | MNEINRIKQALKRQSERKATFEDINYLILKESQYGTLNTRKIEELIC* |
| Ga0114922_116383142 | 3300011118 | Deep Subsurface | MKTEIIKIQNALTRQRKRTATFEDINYLIQKESQY |
| Ga0160423_100415576 | 3300012920 | Surface Seawater | METEITKINQALKRQRERKASFEDIQYLMKKQLQYGTLNTRIIQTLIQ* |
| Ga0160423_100521665 | 3300012920 | Surface Seawater | MTTEITKIKQALKRQRERKASFEDIEFLIKKENQYGTLNPVIIKQLIQ* |
| Ga0129327_108381583 | 3300013010 | Freshwater To Marine Saline Gradient | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRVIQNLIQ* |
| Ga0180120_101058183 | 3300017697 | Freshwater To Marine Saline Gradient | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQSLIQ |
| Ga0181412_10088738 | 3300017714 | Seawater | MTTEITKINQALKRQRERKASFEDIQYLMKKQMQYGTLNTRIIQTLIQ |
| Ga0187218_11536072 | 3300017737 | Seawater | MNEITKIKKALKKQRERRASFEDIEYLIQKENQYGTLNPVIIQNLIQ |
| Ga0181410_11178411 | 3300017763 | Seawater | QALKRQRERRASFEDIEYLIKKQDQYGTLNPVIIQNLIQ |
| Ga0181423_11808493 | 3300017781 | Seawater | RINMETEITKINQALKRQRERKASFEDIQYLMKKQLQYGTLNTRIIQTLIQ |
| Ga0181379_10190552 | 3300017783 | Seawater | MTTEITKIKQALKRQRERKASFQDIEYLIRKQMQYGTLNTRIIQRLIC |
| Ga0181424_101906741 | 3300017786 | Seawater | MTTEITKINQALKRQRERKASFQDIEYLIRKQMQYGTLNTRIIQTLIQ |
| Ga0181552_102461372 | 3300017824 | Salt Marsh | MTTEIKLIESALKRQRERKATFEDIEYLIKKENQYGTLNTRIIQNLIQ |
| Ga0181607_101941021 | 3300017950 | Salt Marsh | IIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRVIKNLIQ |
| Ga0181601_102168252 | 3300018041 | Salt Marsh | MKTEIKLIEKALKRQRERKATFEDINYLIQKESQYGTLNTRVIQSLIQ |
| Ga0181606_101662933 | 3300018048 | Salt Marsh | MSEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQNLIQ |
| Ga0181561_103795582 | 3300018410 | Salt Marsh | MTTEIKLIESALKRQRERKATFEDIEYLIKKENQYGTLNTR |
| Ga0181561_104240441 | 3300018410 | Salt Marsh | TEIKLIESALKRQRERKATFEDIEYLIKKENQYGTLNTRIIKNLIQ |
| Ga0181558_101980854 | 3300018417 | Salt Marsh | MTTEIKLIESALKRQRERKATFEDIEYLIKKENQYGTLNTRIIKNLIQ |
| Ga0181563_104089691 | 3300018420 | Salt Marsh | EIKLIESALKRQRERKATFEDIEYLIKKENQYGTLNTRIIKNLIQ |
| Ga0206677_103565943 | 3300021085 | Seawater | MNEIIKIKKALKKQRERRASFEDIEYLIQKENQYGTLNPVIIQNLIQ |
| Ga0206682_102759693 | 3300021185 | Seawater | MTTEITKIKKALKKQRERRASFEDIEYLIQKENQYGTLNPVIIQNLIQ |
| Ga0213867_10072083 | 3300021335 | Seawater | MTTEINKINQALKRQRERRATFEDIEFLIKKENQYGTLNTSIIKNLIQ |
| Ga0213867_11944802 | 3300021335 | Seawater | MTTEIIKINQALKRQRERRATFEDIEFLIKKENQYGTLNTSIIKNLIQ |
| Ga0222717_100215388 | 3300021957 | Estuarine Water | MNEIIKIQNALTRQRNRTATFEDINYLIKKENQYGTLNPVIIQNLIQ |
| Ga0222716_100380721 | 3300021959 | Estuarine Water | MTTEIKLIEGALKRQRERKASFEDIEFLIKKENQYGTLNTRIIKNLIQ |
| Ga0222715_1002281013 | 3300021960 | Estuarine Water | MRTEIKLIESALKRQRERKASFEDIEYLIKKENQYGTLNTRIIQNLIQ |
| Ga0212030_10398142 | 3300022053 | Aqueous | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIQNLIQ |
| (restricted) Ga0233404_101039943 | 3300022913 | Seawater | MNEIIKIKNALTRQRNRTATFEDINYLIKKESQYGTLNPVIIQNLIQ |
| Ga0255769_102925202 | 3300022927 | Salt Marsh | MSEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRVIKNLIQ |
| (restricted) Ga0233411_100098936 | 3300023112 | Seawater | MNEIIKIQNALTRQRNRTATFEDINYLIKKESQYGTLNPVIIQNLIQ |
| (restricted) Ga0233412_100281565 | 3300023210 | Seawater | MKTEIIKIQNALTRQRNRTATFEDINYLIKKESQYGTLNPVIIQNLIK |
| (restricted) Ga0233412_101039512 | 3300023210 | Seawater | MNEIIKIQNALTRQRNRTATFEDINYLIKKQNQYGTLNPVIIQNLIQ |
| (restricted) Ga0233410_100309185 | 3300023276 | Seawater | MNEIIKIQNALTRQRNRTATFEDINYLIKKESQYG |
| Ga0228633_10160668 | 3300024228 | Seawater | MNEIIKIQNALTRQRNRTATFEDINYLIKKESQYGTLNPVIIQNIIQ |
| Ga0233402_10926014 | 3300024229 | Seawater | TTEIKLIERALKKQRERKASFEDIEYLIQKENQYGTLNPVIIQNLIQ |
| Ga0233399_11192681 | 3300024231 | Seawater | MTTEIKLIERALKKQRERRASFEDIEYLIQKENQYGTLNPVIIQNLIQ |
| Ga0228629_11454792 | 3300024296 | Seawater | MTTEIKLIKQALKRQRERRASFEDIEFLIKKENQYGTLNPVIIKQLIQ |
| Ga0228629_11897083 | 3300024296 | Seawater | MNEIIKIQNALTRQRNRTATFEDIEYLIKKENQYGTLNPVIIQNLIQ |
| Ga0244776_104783711 | 3300024348 | Estuarine | MNEINRIKLALKRQSERRATFEDINYLILKESQYGTL |
| (restricted) Ga0255046_100936725 | 3300024519 | Seawater | MKTEIIKIQNALTRQRNRTATFEDINYLIKKENQYGTLNTRI |
| Ga0207896_100118014 | 3300025071 | Marine | METEITKINQALKRQRERKASFQDIEYLIRKQMQYGTLNTRIIQTLIQ |
| Ga0209535_100105730 | 3300025120 | Marine | MNEINRIKLALKRQSERRATFEDINYLILKESKYGTLNTQIIKELIR |
| Ga0209535_11329982 | 3300025120 | Marine | MNSEIKKISQALKKQKNRTATFEDINFLILKESQYGTLNTQIINQLIK |
| Ga0209336_100617421 | 3300025137 | Marine | MTTEITKIKQALKRQRERKATFEDINYLILKESQYGTLNTQIINQLIK |
| Ga0209634_103227910 | 3300025138 | Marine | MTTEITKIKQALKRQRERKATFEDINYLILKESQYGTLNTRIIQNLIQ |
| Ga0209337_12852843 | 3300025168 | Marine | TTEITKIKQALKRQRERKATFEDINYLILKESQYGTLNTRIIQNLIQ |
| Ga0208814_10214097 | 3300025276 | Deep Ocean | MNEIKKISQALKKQKERTATIQDINFLILKESQYGTLDTRRINQLIK |
| Ga0208303_10131698 | 3300025543 | Aqueous | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTL |
| Ga0209304_100104723 | 3300025577 | Pelagic Marine | MKTEIIKIQNALTRQRKRTATFEDINYLIQKESQYGTLNTRIIQNLIQ |
| Ga0209195_11099883 | 3300025590 | Pelagic Marine | MKTEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTQIIQNLIQ |
| Ga0209716_10223633 | 3300025626 | Pelagic Marine | MNNEIKLIENALRKQRDRTATFSDISFLIKKEAQYGTLNTRVIKNIIQ |
| Ga0208643_10245966 | 3300025645 | Aqueous | MTTEINKINQALKRQRERRATFEDIEYLINKENQYGTLNTNIIKQLIQ |
| Ga0209659_11058841 | 3300025658 | Marine | IIKIQNALTRQRNRTATFEDINYLIKKESQYGTLNPVIIQNLIK |
| Ga0208150_11471852 | 3300025751 | Aqueous | MTTEIIKINQALKRQRERRATFEDIEFLIKKENQYGTLNTSVIKNLIQ |
| Ga0209603_102658914 | 3300025849 | Pelagic Marine | MKTEIIKIQNALTRQRNRTATFEDINYLIQKENQYGTLNTRIIQNLIQ |
| Ga0208644_10248155 | 3300025889 | Aqueous | MTTEIKLIESALKRQRERKATFEDIEFLIKKENQYGTLNTRIIQNLIQ |
| Ga0208023_10061601 | 3300027206 | Estuarine | MNEINRIKLALKRQSERRATFEDINYLILKESQYGTLNTQIIKELIR |
| Ga0209379_101868193 | 3300027758 | Marine Sediment | MNREIKKIEQALRRQRERTATFVDIEFLIRKQRQYGTLNTR |
| Ga0209711_1003790711 | 3300027788 | Marine | MGIELKKIENALRKQKNRTADFEDIEYLILKEQQYGTLNTRVINNLIN |
| Ga0209711_100846659 | 3300027788 | Marine | MNREIKKIEQALRRQRERTATFVDIEFLIRKQRQYGTLNTRIINNLIN |
| (restricted) Ga0255054_104358522 | 3300027856 | Seawater | MTTEIIKIQNALTRQRNRTATFEDINYLIKKESQYGTLNPVIIQNLIQ |
| (restricted) Ga0233415_100373415 | 3300027861 | Seawater | MKTEIIKIQNALTRQRNRTATFEDINYLIKKESQYGTLNPVIIQNLIQ |
| (restricted) Ga0255052_105197223 | 3300027865 | Seawater | RQRNRTATFEDINYLIKKESQYGTLNPVIIQNLIQ |
| (restricted) Ga0255053_101347963 | 3300027868 | Seawater | MKTEIIKIQNALTRQRNRTATFEDINYLIKKENQYGTLNPVIIQNLIQ |
| Ga0209536_1019789961 | 3300027917 | Marine Sediment | MSEIIKIQNALTRQRNRTATFEDINYLIQKESLYGTL |
| (restricted) Ga0233413_104420121 | 3300027996 | Seawater | LTRQRNRTATFEDINYLIKKENQYGTLNPVIIQNLIQ |
| Ga0228643_10184611 | 3300028396 | Seawater | TMNEIIKIQNALTRQRNRTATFEDINYLIKKESQYGTLNPVIIQNIIQ |
| Ga0135212_10334461 | 3300029306 | Marine Harbor | MTTEIKLIERALKRQRERRASFEDIEFLIKKENQYGTLNTSIIKQLIQ |
| Ga0307488_100025613 | 3300031519 | Sackhole Brine | MEIELKKIENALRKQKNRTADFEDIEYLILKEQQYGTLNTRVINNLIN |
| Ga0307488_100207418 | 3300031519 | Sackhole Brine | MNEINRIKLALKRQSERRATFEDINYLILKESQYGTLNTRKIEELIC |
| Ga0307488_1007393111 | 3300031519 | Sackhole Brine | MGIELKKIENALRKQKNRTADFEDIEYLILKEQQYGTLNTRVINDLIN |
| Ga0307488_106519193 | 3300031519 | Sackhole Brine | MNNEIKKISQALKKQKNRTATFEDINFLILKESQYGTLNTQIINQLIK |
| Ga0307380_102692213 | 3300031539 | Soil | MTTEIKLIESALKRQRERTATFEDINYLIQKENQYGTLNTRIIKNLIQ |
| Ga0307489_105278653 | 3300031569 | Sackhole Brine | MNEINRIKLALKRQSERKATFEDINYLILKQSQYGTLNTRKIEELIC |
| Ga0307376_101516027 | 3300031578 | Soil | ALTRQRNRTATFEDINYLIQKENQYGTLNTQIIQNLIQ |
| Ga0307993_100000877 | 3300031602 | Marine | MNEINRIKQALKRQSERKATFEDINYLILKESQYGTLNTRIIQNLIQ |
| Ga0307985_1000233720 | 3300031629 | Marine | MNIEIKKIEQALKRQRERTATFVDIEFLIRKQRQYGTLNTRIINNLIN |
| Ga0307984_10290834 | 3300031658 | Marine | MSEINKIRKALQRQRNRTASIEDINFLIKKESQYGTLNPMIINQIIR |
| Ga0307375_1002826211 | 3300031669 | Soil | MTTEIKLIESALKRQRERKATFEDIEFLIKKQNQYGTLNTRIIKNLIQ |
| Ga0307375_102088314 | 3300031669 | Soil | METEIIKIQNALTRQRNRTATFEDINYLIQKESQYGTLNTRIIKNLIQ |
| Ga0307377_107414773 | 3300031673 | Soil | MTTEIKLIESALKRQRERTATFEDINYLIQKENQYGTLNTR |
| Ga0315322_100783791 | 3300031766 | Seawater | EITKINQALKKQRERRASFEDIEYLIQKENQYGTLNPVIIQNLIQ |
| Ga0315320_107354942 | 3300031851 | Seawater | MKTEITKINQALKKQRERRASFEDIEYLIQKENQYGTLNPVIIQNLIQ |
| Ga0315320_107804123 | 3300031851 | Seawater | ALKKQRERRASFEDIEYLIQKENQYGTLNPVIIQNLIQ |
| Ga0314858_007995_1391_1534 | 3300033742 | Sea-Ice Brine | MNEINRIKLALKRQSERRATFEDINYLILKQSQYGTLNTRKIEELIC |
| Ga0314858_170253_308_454 | 3300033742 | Sea-Ice Brine | METEITKIKQALKRQRERKATFEDINYLILKESQYGTLNTRIIQTLIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |