NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F058347

Metagenome / Metatranscriptome Family F058347

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F058347
Family Type Metagenome / Metatranscriptome
Number of Sequences 135
Average Sequence Length 60 residues
Representative Sequence VSGFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRN
Number of Associated Samples 121
Number of Associated Scaffolds 135

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 29.32 %
% of genes near scaffold ends (potentially truncated) 40.74 %
% of genes from short scaffolds (< 2000 bps) 88.89 %
Associated GOLD sequencing projects 118
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (62.963 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(24.444 % of family members)
Environment Ontology (ENVO) Unclassified
(26.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.185 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.27%    β-sheet: 0.00%    Coil/Unstructured: 47.73%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 135 Family Scaffolds
PF16870OxoGdeHyase_C 64.44
PF02779Transket_pyr 6.67
PF00676E1_dh 0.74
PF02538Hydantoinase_B 0.74
PF08525OapA_N 0.74
PF00512HisKA 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 135 Family Scaffolds
COG0146N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunitAmino acid transport and metabolism [E] 1.48
COG05672-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymesEnergy production and conversion [C] 0.74
COG1071TPP-dependent pyruvate or acetoin dehydrogenase subunit alphaEnergy production and conversion [C] 0.74
COG3061Cell division protein YtfB/OapA (opacity-associated protein A)Cell cycle control, cell division, chromosome partitioning [D] 0.74


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms62.96 %
UnclassifiedrootN/A37.04 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000156|NODE_c0721745Not Available6044Open in IMG/M
3300000363|ICChiseqgaiiFebDRAFT_13911514All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300000891|JGI10214J12806_10851042All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300000956|JGI10216J12902_105918435Not Available651Open in IMG/M
3300000956|JGI10216J12902_106439160All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300001305|C688J14111_10009066All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2809Open in IMG/M
3300002568|C688J35102_118435582Not Available559Open in IMG/M
3300002568|C688J35102_120141238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium897Open in IMG/M
3300004114|Ga0062593_102683347All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300004114|Ga0062593_103370136All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium513Open in IMG/M
3300004156|Ga0062589_100089019All Organisms → cellular organisms → Bacteria1917Open in IMG/M
3300004156|Ga0062589_100922056Not Available807Open in IMG/M
3300004479|Ga0062595_100042355All Organisms → cellular organisms → Bacteria2002Open in IMG/M
3300004480|Ga0062592_100804628All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300005093|Ga0062594_101602538All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300005294|Ga0065705_11072658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium529Open in IMG/M
3300005328|Ga0070676_10675711All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300005332|Ga0066388_108147097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium523Open in IMG/M
3300005337|Ga0070682_100173043All Organisms → cellular organisms → Bacteria1502Open in IMG/M
3300005337|Ga0070682_101363633Not Available605Open in IMG/M
3300005338|Ga0068868_100543693All Organisms → cellular organisms → Bacteria1023Open in IMG/M
3300005356|Ga0070674_100629095Not Available910Open in IMG/M
3300005437|Ga0070710_10086251All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1843Open in IMG/M
3300005444|Ga0070694_100406676Not Available1067Open in IMG/M
3300005526|Ga0073909_10300371All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300005543|Ga0070672_101246912All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300005548|Ga0070665_101588755Not Available662Open in IMG/M
3300005564|Ga0070664_101911655Not Available563Open in IMG/M
3300005614|Ga0068856_102000624All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300005764|Ga0066903_100216653All Organisms → cellular organisms → Bacteria2894Open in IMG/M
3300005764|Ga0066903_104820854All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium717Open in IMG/M
3300005873|Ga0075287_1052827All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300005983|Ga0081540_1002453All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria15102Open in IMG/M
3300006058|Ga0075432_10423947Not Available579Open in IMG/M
3300006175|Ga0070712_100329900All Organisms → cellular organisms → Bacteria1243Open in IMG/M
3300006237|Ga0097621_100395925All Organisms → cellular organisms → Bacteria1236Open in IMG/M
3300006806|Ga0079220_11994608All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300006845|Ga0075421_101580812Not Available714Open in IMG/M
3300006852|Ga0075433_10840169Not Available802Open in IMG/M
3300006852|Ga0075433_11195218Not Available660Open in IMG/M
3300006854|Ga0075425_101940165All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300006954|Ga0079219_11651586All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium590Open in IMG/M
3300009100|Ga0075418_10572334Not Available1215Open in IMG/M
3300009156|Ga0111538_11648754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium808Open in IMG/M
3300009553|Ga0105249_10556291Not Available1198Open in IMG/M
3300010039|Ga0126309_11157558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium529Open in IMG/M
3300010040|Ga0126308_10008808All Organisms → cellular organisms → Bacteria4980Open in IMG/M
3300010045|Ga0126311_10279561All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300010046|Ga0126384_12431450All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium507Open in IMG/M
3300010147|Ga0126319_1289314Not Available1145Open in IMG/M
3300010360|Ga0126372_10074251Not Available2437Open in IMG/M
3300010397|Ga0134124_11359240All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300010400|Ga0134122_13187498Not Available514Open in IMG/M
3300011332|Ga0126317_10030246All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300012198|Ga0137364_11289470Not Available544Open in IMG/M
3300012212|Ga0150985_114163139Not Available644Open in IMG/M
3300012480|Ga0157346_1006670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes751Open in IMG/M
3300012481|Ga0157320_1040140All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300012900|Ga0157292_10444920All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium500Open in IMG/M
3300012937|Ga0162653_100010150Not Available1121Open in IMG/M
3300012948|Ga0126375_11297643Not Available611Open in IMG/M
3300012951|Ga0164300_10697910Not Available614Open in IMG/M
3300012955|Ga0164298_10423401All Organisms → cellular organisms → Bacteria867Open in IMG/M
3300012955|Ga0164298_11604067All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300012957|Ga0164303_11198091All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium555Open in IMG/M
3300012960|Ga0164301_10498517All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300012961|Ga0164302_11814781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria515Open in IMG/M
3300012984|Ga0164309_11168910All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300012984|Ga0164309_11955450Not Available503Open in IMG/M
3300013296|Ga0157374_12705192All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300013307|Ga0157372_10350695All Organisms → cellular organisms → Bacteria1719Open in IMG/M
3300014497|Ga0182008_10151533Not Available1163Open in IMG/M
3300015371|Ga0132258_11583223All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1654Open in IMG/M
3300018027|Ga0184605_10110880Not Available1217Open in IMG/M
3300018028|Ga0184608_10222112Not Available829Open in IMG/M
3300018054|Ga0184621_10298444All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium569Open in IMG/M
3300018061|Ga0184619_10116181Not Available1209Open in IMG/M
3300018072|Ga0184635_10259658All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300018073|Ga0184624_10082416Not Available1356Open in IMG/M
3300018465|Ga0190269_11253632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium588Open in IMG/M
3300019886|Ga0193727_1020761All Organisms → cellular organisms → Bacteria2357Open in IMG/M
3300020002|Ga0193730_1066442Not Available1031Open in IMG/M
3300020005|Ga0193697_1059608Not Available944Open in IMG/M
3300021363|Ga0193699_10410276Not Available561Open in IMG/M
3300021445|Ga0182009_10292834All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300021560|Ga0126371_12418731Not Available635Open in IMG/M
3300022694|Ga0222623_10080621All Organisms → cellular organisms → Bacteria1262Open in IMG/M
3300022756|Ga0222622_10664724Not Available755Open in IMG/M
3300022756|Ga0222622_11273461All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300024181|Ga0247693_1026579All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300024219|Ga0247665_1064289All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium525Open in IMG/M
3300025885|Ga0207653_10038861All Organisms → cellular organisms → Bacteria1556Open in IMG/M
3300025901|Ga0207688_10635573All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300025915|Ga0207693_10186417All Organisms → cellular organisms → Bacteria1633Open in IMG/M
3300025923|Ga0207681_10640527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria881Open in IMG/M
3300025931|Ga0207644_10568033All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300025935|Ga0207709_10794017Not Available764Open in IMG/M
3300025942|Ga0207689_11519713All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300025961|Ga0207712_10752565Not Available854Open in IMG/M
3300026035|Ga0207703_10273461All Organisms → cellular organisms → Bacteria1531Open in IMG/M
3300026041|Ga0207639_11575195All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300027821|Ga0209811_10094719All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1067Open in IMG/M
3300028380|Ga0268265_10252193All Organisms → cellular organisms → Bacteria1564Open in IMG/M
3300028589|Ga0247818_11163122Not Available550Open in IMG/M
3300028592|Ga0247822_11471990Not Available575Open in IMG/M
3300028704|Ga0307321_1006199All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1987Open in IMG/M
3300028711|Ga0307293_10057850Not Available1209Open in IMG/M
3300028718|Ga0307307_10098355All Organisms → cellular organisms → Bacteria890Open in IMG/M
3300028719|Ga0307301_10024205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1790Open in IMG/M
3300028720|Ga0307317_10038299All Organisms → cellular organisms → Bacteria1513Open in IMG/M
3300028720|Ga0307317_10298357Not Available544Open in IMG/M
3300028722|Ga0307319_10023794All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1879Open in IMG/M
3300028787|Ga0307323_10042194All Organisms → cellular organisms → Bacteria1601Open in IMG/M
3300028787|Ga0307323_10300074All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300028793|Ga0307299_10039391Not Available1729Open in IMG/M
3300028811|Ga0307292_10007183Not Available3756Open in IMG/M
3300028875|Ga0307289_10009743All Organisms → cellular organisms → Bacteria3676Open in IMG/M
3300028876|Ga0307286_10342195Not Available556Open in IMG/M
3300028878|Ga0307278_10293044All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300028880|Ga0307300_10008710Not Available2570Open in IMG/M
3300028884|Ga0307308_10306561Not Available761Open in IMG/M
3300030511|Ga0268241_10066791All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300031091|Ga0308201_10122416Not Available781Open in IMG/M
3300031093|Ga0308197_10358381All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium557Open in IMG/M
3300031152|Ga0307501_10207998Not Available563Open in IMG/M
3300031740|Ga0307468_100596395All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria901Open in IMG/M
3300031995|Ga0307409_100562596All Organisms → cellular organisms → Bacteria1121Open in IMG/M
3300031996|Ga0308176_10006096All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8050Open in IMG/M
3300031996|Ga0308176_10031712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4130Open in IMG/M
3300032003|Ga0310897_10289508All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300032013|Ga0310906_11209886All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300032205|Ga0307472_101271680Not Available707Open in IMG/M
3300034820|Ga0373959_0095762All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium701Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil24.44%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.19%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.19%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.44%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.44%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.70%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil2.22%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.22%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.22%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.22%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.22%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.96%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil1.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.48%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.48%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.48%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.48%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.48%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.48%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.48%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.48%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.48%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.74%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.74%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.74%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.74%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.74%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.74%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.74%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.74%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.74%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.74%
Sugar Cane Bagasse Incubating BioreactorEngineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor0.74%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000156Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobicEngineeredOpen in IMG/M
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001305Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005873Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301EnvironmentalOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010147Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011332Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012480Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610Host-AssociatedOpen in IMG/M
3300012481Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610Host-AssociatedOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012937Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300019886Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2EnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300020005Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2EnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300024181Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34EnvironmentalOpen in IMG/M
3300024219Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028704Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028720Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028880Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300030511Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)EnvironmentalOpen in IMG/M
3300031091Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031093Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031152Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_SEnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
NODE_072174533300000156Sugar Cane Bagasse Incubating BioreactorVARVRIFRRTGAVGVALTAWDIWRRIPKQHRRMIVRQARKQGPKVAAAVITYGRRRSGRRPPG*
ICChiseqgaiiFebDRAFT_1391151423300000363SoilVPVFSSLRRAGPIGVALTAWDIWRRIPKEHRRAILHQARKHGPTVATKLMQQRQRRRKP*
JGI10214J12806_1085104223300000891SoilVARYPLFRRTGAIGVALTAYDIWRRIPKQHRRMIIRQGRRYGPLIVAKVVEQRRKRRPPR
JGI10216J12902_10591843523300000956SoilRTGAIGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVIVAKVVQQRRKRHPPR*
JGI10216J12902_10643916023300000956SoilAGLRGFRRTGTIGLALTAWDIWRRIPKQHRRLLVRQARKHGPRIASKLVQQQQARRRKP*
C688J14111_1000906623300001305SoilMAGFRAFRRTGTVGLALTAWDIWRRIPKQHRRVIIRQARKHGPRIASKLMQQQQRRRNP*
C688J35102_11843558213300002568SoilMAGFRAFRRTGTIGLALTAWDIWRRIPKQHRRVIVRQGRKYGPILAAKLLEQRRRRRPS*
C688J35102_12014123813300002568SoilMAGFRAFRRTGTVGLALTAWDIWRRIPKQHRRVIIRQARKHGPRIASKLMQQQQRRRN
Ga0062593_10268334723300004114SoilMAGFRGFRRTGTIGLALTAWDIWRRIPKQHRRVIVRQGRRYGPILAAKLIAYQQRRRGRS
Ga0062593_10337013623300004114SoilMAGFRGFRRTGTIGLALTAWDIWRRIPKQHRRVIVRQARKHGPKLASKLMQQQ
Ga0062589_10008901943300004156SoilMAGFRGFRRTGTIGLALTAWDIWRRIPKQHRRVIVRQARKHGPKLASKLMQQQRRRGA*
Ga0062589_10092205613300004156SoilAVGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVILAKVVQQRRKRRPPR*
Ga0062595_10004235523300004479SoilVARFRVFQRTGAVGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVILAKVVQQRRKRRPPR
Ga0062592_10080462813300004480SoilVTTTRSARLPRMAGFRGFRRTGTIGLALTAWDIWRRIPKQHRRVIVRQARKHGPKLASKLMQQQRRRGA*
Ga0062594_10160253823300005093SoilVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYGPIVASKVIQQRRRHRRAP
Ga0065705_1107265813300005294Switchgrass RhizosphereVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILYQARKHGPAVATKLMQQRQRRRRP*
Ga0070676_1067571123300005328Miscanthus RhizosphereVSGFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRNS*
Ga0066388_10814709713300005332Tropical Forest SoilLARFSLYRRTGAIGVALTAYDIWRRIPKQHRRTIIRQGRKYGPVIVAKVVAQRRKRRPPR
Ga0070682_10017304323300005337Corn RhizosphereMPRAKSFRRTGTIGLALTAWDIWRRIPKQHRRLLVRQARKHGPRIASKLVQQQQARRRKP
Ga0070682_10136363323300005337Corn RhizosphereRVTGRSARLPFVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYGPIVASKVIQQRRRHRRAP*
Ga0068868_10054369323300005338Miscanthus RhizosphereVAGYRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP
Ga0070674_10062909523300005356Miscanthus RhizospherePRQGSRAEALGSRFVAGYRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP*
Ga0070710_1008625113300005437Corn, Switchgrass And Miscanthus RhizosphereMPPLRSFRRTGTIGLALTAWDIWRRIPKEHRRTLVRQARKHGPRV
Ga0070694_10040667623300005444Corn, Switchgrass And Miscanthus RhizosphereRQGSRAEALGSRFVAGYRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP*
Ga0073909_1030037123300005526Surface SoilVAPLRSFRGAGPIALALTAWDIWRRIPKQHRRAILGQARKHGPVVVSKLMQQRQRRRRP*
Ga0070672_10124691223300005543Miscanthus RhizosphereVSGFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRNN*
Ga0070665_10158875523300005548Switchgrass RhizosphereVSGFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAPQQRRRDRNS*
Ga0070664_10191165523300005564Corn RhizosphereTPGRSASLPRMAAFRSLRRTGTLGLALTAWDVWRRIPKQHRRAILRHGRKYGPILAAKLVAQQQRRRGRS*
Ga0068856_10200062423300005614Corn RhizosphereVAGFRTFRRTGTLGLALTAWDIWRRIPKQHRRVIIRQARKHGPRIASKIVQQQARRRRP*
Ga0066903_10021665343300005764Tropical Forest SoilMPPLKSFRRTGTIGLALTAWDIWRRIPKEHRRTIVRQARVHGPRVAARLMEQQRRRKTGR
Ga0066903_10482085423300005764Tropical Forest SoilMPRLTSFRRTGTIGLALTAWDIWRRIPKQHRRAIVRQARVHGPRVAAKVMEQQRRRKTGRR*
Ga0075287_105282723300005873Rice Paddy SoilMAGFRAFRRTGTIGLALTAWDIWRRIPKQHRRVIIRQARKHGPKLASKLMEQRQRRRPS*
Ga0081540_1002453143300005983Tabebuia Heterophylla RhizosphereVASFRAFRRTGTLGLALTAWDIWRRIPKQHRRALVRQGRKYGPILVAKVVAQQQRRRDRKAG*
Ga0075432_1042394723300006058Populus RhizosphereVARFRVFQRTGAVGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVIVAKVVQQRRKRRPPT
Ga0070712_10032990023300006175Corn, Switchgrass And Miscanthus RhizosphereLPRMAAFRSLRRTGTLGLALTAWDVWRRIPKQHRRAILRHGRKYGPILAAKLVAQQQRRRGRS*
Ga0097621_10039592513300006237Miscanthus RhizosphereSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRNS*
Ga0079220_1199460823300006806Agricultural SoilMPRRSVFRRTGAIGVALTAWDIWRRIPKQHRRLIIRQARKQGPVVAAKLMQQRQRRRQSR
Ga0075421_10158081213300006845Populus RhizosphereRSVRLRPVARFRVFQRTGAIGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVILAKVVQQRSKRRPPR*
Ga0075433_1084016913300006852Populus RhizosphereLFRRTGAIGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVIVAKVVQQRRKRRPPT*
Ga0075433_1119521823300006852Populus RhizosphereLRPVDRFRVFQRTGAIGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVILAKVVQQRSKRRPPR*
Ga0075425_10194016523300006854Populus RhizosphereVAPFRLFRRTGAIGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVIVAKVVQQRRKRRPPT
Ga0079219_1165158623300006954Agricultural SoilMPQRRIFRRTGAIGVALTAWDIWRRIPKQHRRLIIRQARKQGPVVAAKLMQQRQRRRQSR
Ga0075418_1057233433300009100Populus RhizosphereVDRFRVFQRTGAIGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVILAKVVQQRSKRRPPR
Ga0111538_1164875433300009156Populus RhizosphereVARFRVFQRTGAIGVALTAYDIWRRIPKQHRRMIIRQGRRYGPVILAKVVQQRSKRRPPR
Ga0105249_1055629133300009553Switchgrass RhizosphereVSGFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRHS*
Ga0126309_1115755813300010039Serpentine SoilVVAPFRLLRRTGTLGLALTAWDIWRRIPKQHRRALMRQARKHGPTVAAKVMEQQRRRRGG
Ga0126308_1000880833300010040Serpentine SoilVPVFSSLRRAGPIGLALTAWDIWRRIPKQHRRAILQQARKHGPTVATKLMQQRQRRRKP*
Ga0126311_1027956113300010045Serpentine SoilSLRRAGPIGLALTAWDIWRRIPKQHRRAILQQARKHGPTVATKLMQQRQRRRKP*
Ga0126384_1243145013300010046Tropical Forest SoilMPPLRSFRRTGTIGLALTAWDIWRRIPKQHRRAIVRQARKQGPRVAAVLMEQQRRRR
Ga0126319_128931413300010147SoilMAGFSAFRRTGTIGLALTAWDIWRRIPKQHRRVIIRQARKHGPILAAKLMEQQRRRRA*
Ga0126372_1007425123300010360Tropical Forest SoilMPPLRSFRRTGTIGLALTAWDIWRRIPKQHRRAIVRQARKQGPRVAAVLMEQQRRRRSARP*
Ga0134124_1135924023300010397Terrestrial SoilRRTGTIGLALTAWDIWRRIPKQHRRLLVRQARKHGPRIASKLVQQQQARRRKP*
Ga0134122_1318749813300010400Terrestrial SoilFVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYGPIVASKVIQQRRRHRRAP*
Ga0126317_1003024623300011332SoilRRTGTIGLALTAWDIWRRIPKQHRRVIVRQGRKYGPILAAKLIEQRRRRRPS*
Ga0137364_1128947013300012198Vadose Zone SoilMAGFRAFRRTGTIGLALTAWDIWRRIPKQHRRVLVRQGRKYGPILAAKLLEQRRRRRLS*
Ga0150985_11416313923300012212Avena Fatua RhizosphereMAGFRAFRRTGTVGLALTAWDIWRRIPKQHRRVIIRQARKHGPRIASKLMQQQQRRRNPS
Ga0157346_100667023300012480Arabidopsis RhizosphereVAQFRLFRRTGAIGVALTAYDIWRRIPKEHRRMIIRQGRRYGPVIVAKVVAQRRKRRPPK
Ga0157320_104014023300012481Arabidopsis RhizosphereVAGLRGFRRTGTIGLALTAWDIWRRIPKQHRRLLVRQARKHGPRVAAKLMEQQRRRKAGR
Ga0157292_1044492023300012900SoilMPRLKTFRRTGTIGLALTAWDIWRRIPKQHRRVIVRQARKHGPKLASKLMQQQRRRGA*
Ga0162653_10001015023300012937SoilAEALGSRFVAGFRTFRRTGTIGVALTAWDIWRRIPQKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP*
Ga0126375_1129764323300012948Tropical Forest SoilVARFSLYRRTGAIGVALTAYDIWRRIPKQHRRTIIRQGRKYGPVIVAKVVAQRRKRRPPR
Ga0164300_1069791023300012951SoilMAGFSAFRRTGTIGLALTAWDIWRRIPKQHRRVIIRQGRRYGPILAAKLMEQQRRRRHT*
Ga0164298_1042340123300012955SoilVSGFRSFRRTGTIGLALTAWDIWRRIPKQHRRVLVRQGRKYGPILAAKVIAQQQRRRDRNS*
Ga0164298_1160406723300012955SoilVAGFRAFRRTGTIGLALTAYDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRKAG*
Ga0164303_1119809123300012957SoilVAGFRSLRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRNS*
Ga0164301_1049851723300012960SoilVAGFRAFRRTGTIGLALTAYDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRKTG*
Ga0164302_1181478113300012961SoilVAGFRAFRRTGTIGLALTAYDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQR
Ga0164309_1116891023300012984SoilFRRTGTIGLALTAYDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRKAG*
Ga0164309_1195545023300012984SoilSFRRTGTIGLALTAWDIWRRIPKEHRRTLVRQARKHGPRVAAKLMEQQRRRKAGR*
Ga0157374_1270519213300013296Miscanthus RhizosphereAVAGLRGFRRTGTIGLALTAWDIWRRIPKQHRRLLVRQARKHGPRIASKLVQQQQARRRKP*
Ga0157372_1035069523300013307Corn RhizosphereVAGLRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYGPIVASKVIQQRRRHRRAP
Ga0182008_1015153313300014497RhizosphereFRRTGTIGLALTAWDIWRRIPKQHRRLLVRQARKHGPRIASKLVQQQQARRRKT*
Ga0132258_1158322333300015371Arabidopsis RhizosphereVAGFRSFRRTGTLGLALTAWDIWRRIPKQPRRTLVRQGRKYGPLLAAKVIAQQQRRRDRKAG*
Ga0184605_1011088013300018027Groundwater SedimentMPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRRP
Ga0184608_1022211213300018028Groundwater SedimentVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRKP
Ga0184621_1029844423300018054Groundwater SedimentVPVFSSLRRAGPIGLALTAWVIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRKP
Ga0184619_1011618133300018061Groundwater SedimentVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRRP
Ga0184635_1025965823300018072Groundwater SedimentVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP
Ga0184624_1008241623300018073Groundwater SedimentVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRRRRAP
Ga0190269_1125363213300018465SoilVPVFSSLRRAGPIGVALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRKP
Ga0193727_102076123300019886SoilMAGFSAFRRTGTIGLALTAWDIWRRIPKQHRRVIIRQARKHGPILAAKLMEQQRRRRA
Ga0193730_106644223300020002SoilVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPMVATKLMQQRQRRRKP
Ga0193697_105960813300020005SoilMAGFSAFRRTGTIGLALTAWDIWRRIPKQHRRVIIRQGRKYGPILAAKLMEQQRRRRHT
Ga0193699_1041027623300021363SoilSPPAMAGFSAFRRTGTIGLALTAWDIWRRIPKQHRRVIIRQARKHGPILAAKLMEQQRRRRA
Ga0182009_1029283423300021445SoilVAGLRGFRRTGTIGLALTAWDIWRRIPKQHRRLLVRQARKHGPRIASKLVQQQQARRRKP
Ga0126371_1241873123300021560Tropical Forest SoilMPRLTSFRRTGTIGLALTAWDIWRRIPKQHRRAIVRQARVHGPRVAAKVMEQQRRRKTGR
Ga0222623_1008062113300022694Groundwater SedimentSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRKP
Ga0222622_1066472413300022756Groundwater SedimentRFVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRRRRAP
Ga0222622_1084858113300022756Groundwater SedimentVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIV
Ga0222622_1127346123300022756Groundwater SedimentMAGFSAFRRTGTIGLALTAWDIWRRIPKQHRRVIIRQGRKYGPILAAKLIEQQRRRRPS
Ga0247693_102657923300024181SoilMPPLKTFRRTGTIGLALTAWDIWRRIPKEHRRTIVRQARVHGPRVAARLMEQQRRRKAGR
Ga0247665_106428913300024219SoilMPPLRSFRRTGTIGLALTAWDIWRRIPKEHRRTLVRQARKHGPRVAARLM
Ga0207653_1003886123300025885Corn, Switchgrass And Miscanthus RhizosphereVSGFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRN
Ga0207688_1063557313300025901Corn, Switchgrass And Miscanthus RhizospherePAVSGFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRNS
Ga0207654_1111830423300025911Corn RhizosphereMAAFRSLRRTGTLGLALTAWDVWRRIPKQHRRAILRHGRKYGPILAA
Ga0207693_1018641723300025915Corn, Switchgrass And Miscanthus RhizosphereMAAFRSLRRTGTLGLALTAWDVWRRIPKQHRRAILRHGRKYGPILAAKLVAQQQRRRGRS
Ga0207681_1064052723300025923Switchgrass RhizosphereVAGYRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYGPIVASKVIQQRRRHRRAP
Ga0207644_1056803323300025931Switchgrass RhizosphereMPRAKSFRRTGTIGLALTAWDIWRRIPKQHRRVIVRQARKHGPRVAAKLMEQQRRRKATR
Ga0207709_1079401713300025935Miscanthus RhizosphereRATRSTARVTGRSARLPFVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYGPIVASKVIQQRRRHRRAP
Ga0207689_1151971313300025942Miscanthus RhizosphereFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRNS
Ga0207712_1075256513300025961Switchgrass RhizosphereFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP
Ga0207703_1027346123300026035Switchgrass RhizosphereVSGFRSFRRTGTIGLALTSWDIWRRIPKQHRRAHVRQGRKYGPILAAKVIAQQQRRRDRN
Ga0207639_1157519523300026041Corn RhizosphereVAGLRGFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRN
Ga0209811_1009471923300027821Surface SoilMAGFSAFRRTGTIGLALTAWDIWRRIPKQHRRVIIRQGRRYGPILAAKLMEQQRRRRHT
Ga0268265_1025219323300028380Switchgrass RhizosphereVSGFRSFRRTGTIGLALTAWDIWRRIPKQHRLALVRQGRKYGPILAAKVIAQQQRRRDRN
Ga0247818_1116312213300028589SoilVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILYQARKHGPAVATKLMQQRQRRRRP
Ga0247822_1147199013300028592SoilPRQGSRAEALGSRFVAGYRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP
Ga0307321_100619913300028704SoilGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRRP
Ga0307293_1005785023300028711SoilMPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRKP
Ga0307307_1009835523300028718SoilVAGFRAFRRTGTLGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKLIAQQQRRRDRN
Ga0307301_1002420523300028719SoilGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRRRRAP
Ga0307317_1003829913300028720SoilLPAVAGFRAFRRTGTLGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKLIAQQQRRRDRN
Ga0307317_1029835713300028720SoilAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP
Ga0307319_1002379413300028722SoilRATRTTPRSARLFPVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRKP
Ga0307323_1004219413300028787SoilRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRRP
Ga0307323_1030007423300028787SoilMAGFSAFRRTGTIGLALTALDIWRRIPKQHRRVIIRQGRKYGPILAAKLIEQQRRRRPS
Ga0307299_1003939123300028793SoilAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRRP
Ga0307292_1000718313300028811SoilRSARLFPVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRKP
Ga0307289_1000974313300028875SoilPAVAGFRSFRRTGTLGLALTAWDIWRRIPKQHRRTLVRQGRKYGPILAAKVIAQQKRRRGRKAG
Ga0307286_1034219523300028876SoilTARSARLFPVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVATKLMQQRQRRRRP
Ga0307278_1029304423300028878SoilVAGFRTFRRTGTIGIALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRHRRAP
Ga0307300_1000871013300028880SoilGPRQGSRAEALGSRFVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRRRRAP
Ga0307308_1030656113300028884SoilRQGPRQGSRAEALGSRFVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRRRRAP
Ga0268241_1006679123300030511SoilMPPKGFRRTGTIGLALTAWDIWRRIPKEHRRLIVRQARKHGPRVASKLMEQQRRRKAGR
Ga0308201_1012241613300031091SoilPRQGSRAEALGSRFVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRRRRAP
Ga0308197_1035838123300031093SoilVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRRRR
Ga0307501_1020799823300031152SoilRSARLFPVPVFSSLRRAGPIGLALTAWDIWRRIPKKHRRAILHQARKHGPTVVTKLMQQRQRRRRP
Ga0307468_10059639513300031740Hardwood Forest SoilVARNPLFRRTGAIGVALTAYDIWRRIPKEHRRMIIRQGRRYGPVIVAKVVQQSRKRRPPR
Ga0307409_10056259623300031995RhizosphereMARRIRTTPIGLAFTAWEIWRRIPKQQRRAILRQARIYGPKFASQMMKLQQQRRRGPS
Ga0308176_1000609663300031996SoilMAGFSAFRRTGTIGLALTAWDIWRRIPKQHRRVILRQARIHGPKLASKLMEQQQRRRRPS
Ga0308176_1003171243300031996SoilVAGFRTFRRTGTIGLALTAWDIWRRIPKKQRRAIVRQARIYAPIVASKVIQQRRRNRRAP
Ga0310897_1028950823300032003SoilMPPLKGFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRN
Ga0310906_1120988623300032013SoilGFRSFRRTGTIGLALTAWDIWRRIPKQHRRALVRQGRKYGPILAAKVIAQQQRRRDRKAG
Ga0307472_10127168023300032205Hardwood Forest SoilRVTGRSARLPFVAGFRTFRRTGTVGLALTAWDIWRRIPKKQRRAIVNQARIYAPIVASKVIQQRRRHRRAP
Ga0373959_0095762_1_1533300034820Rhizosphere SoilMPPLRSFRRTGTIGLALTAWDIWRRIPKEHRRTLVRQARKHGPRVAARLME


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.