Metagenome / Metatranscriptome Family F057774

Overview

Basic Information

• Family ID: F057774
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 136
• Average Sequence Length: 41 residues
• Representative Sequence: MVSVVVSIRMRKMFAEVRKMFLNARHAEQDVRERQASRNF
• Number of Associated Samples: 101
• Number of Associated Scaffolds: 136

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 48.15 %
• % of genes near scaffold ends (potentially truncated): 43.38 %
• % of genes from short scaffolds (< 2000 bps): 68.38 %
• Associated GOLD sequencing projects: 95
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (74.265 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost (25.000 % of family members)
• Environment Ontology (ENVO): Unclassified (41.912 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (75.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 55.88%
  β-sheet: 0.00%
  Coil/Unstructured: 44.12%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF07676	PD40	13.24
PF00069	Pkinase	5.15
PF02518	HATPase_c	2.21
PF00291	PALP	1.47
PF12833	HTH_18	1.47
PF07883	Cupin_2	1.47
PF03704	BTAD	1.47
PF13517	FG-GAP_3	1.47
PF16916	ZT_dimer	1.47
PF12706	Lactamase_B_2	1.47

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	20.59
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	1.47
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	1.47
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	1.47
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	1.47
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.74
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.74
COG0698	Ribose 5-phosphate isomerase RpiB	Carbohydrate transport and metabolism [G]	0.74
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.74
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.74

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.26 %
Unclassified	root	N/A	25.74 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.26 %
Unclassified	root	N/A	25.74 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.26 %
Unclassified	root	N/A	25.74 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.94 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	32.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.94 %
Unclassified	root	N/A	25.74 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.47 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.47 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.74 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	32.35 %
Unclassified	root	N/A	25.74 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.74 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.47 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.74 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	5.15 %
Unclassified	root	N/A	25.74 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.47 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	20.59 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.74 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.47 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	5.15 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	19.85 %
Gemmatimonadetes bacterium 13_1_40CM_4_69_8	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_8	0.74 %
Unclassified	root	N/A	25.74 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.74 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.74 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.47 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.74 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.74 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4.41 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	19.85 %
Gemmatimonadetes bacterium 13_1_40CM_4_69_8	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_8	0.74 %
Unclassified	root	N/A	25.74 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.74 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.47 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.74 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	0.74 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	19.85 %
Gemmatimonadetes bacterium 13_1_40CM_4_69_8	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_8	0.74 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	1.47 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.74 %
Unclassified	root	N/A	25.74 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	2.21 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.47 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.74 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	0.74 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2.21 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	19.85 %
Gemmatimonadetes bacterium 13_1_40CM_4_69_8	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_8	0.74 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.74 %
Unclassified	root	N/A	25.74 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	1.47 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.47 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.74 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	0.74 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2.21 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	19.85 %
Gemmatimonadetes bacterium 13_1_40CM_4_69_8	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_8	0.74 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1.47 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.74 %
Unclassified	root	N/A	25.74 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2088090004|P1_DRAFT_NODE_206278_len_858_cov_6_702797	All Organisms → cellular organisms → Bacteria	908
2088090008|P3_DRAFT_NODE_420112_len_1232_cov_16_381493	Not Available	1282
2088090008|P3_DRAFT_NODE_428401_len_1944_cov_9_605453	Not Available	1994
2088090008|P3_DRAFT_NODE_504412_len_1355_cov_10_144650	All Organisms → cellular organisms → Bacteria	1405
2124908032|Perma_A_C_ConsensusfromContig140065	Not Available	1452
2124908041|P3_CLC_ConsensusfromContig123041	All Organisms → cellular organisms → Bacteria	1231
2124908041|P3_CLC_ConsensusfromContig152170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	667
2124908041|P3_CLC_ConsensusfromContig37964	Not Available	2507
2124908041|P3_CLC_ConsensusfromContig59483	All Organisms → cellular organisms → Bacteria	724
2140918006|ConsensusfromContig89048	Not Available	1126

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.26%
Host-Associated	Host-Associated	0.74%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.15%
Plants	Host-Associated → Plants	0.74%
Terrestrial	Environmental → Terrestrial	94.12%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.74%
Sediment	Environmental → Aquatic → Sediment	4.41%
Soil	Environmental → Terrestrial → Soil	93.38%
Unclassified	Environmental → Terrestrial → Unclassified	0.74%

Type

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	0.74%
Loam	Environmental → Terrestrial → Soil → Loam	8.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.47%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.41%
Unclassified	Environmental → Terrestrial → Unclassified → Unclassified	0.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.82%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	42.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.41%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Unclassified → Unclassified → Unclassified	0.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.74%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.47%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	8.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.47%
Cryoconite Hole, Glacier Surface	Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Cryoconite Hole, Glacier Surface	0.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.15%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	6.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	25.00%
Permafrost And Active Layer Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil	0.74%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.47%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.74%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	8.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	5.15%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.15%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2088090004	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental
2088090008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental
2124908041	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental
2140918006	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental
3300000886	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina	Environmental
3300001324	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-35cm)- 6 month illumina	Environmental
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental
3300001334	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-65cm)- 6 month illumina	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P1_DRAFT_00522990	2088090004	Soil	MVSVVVSIRMRKMFVEMRSMFVNARHAEQDIRERQASKNF
P3_DRAFT_00285690	2088090008	Soil	MVSVVVSIRMRKMFAEVRKTFLNARHAEQDVREMQASWNF
P3_DRAFT_00804870	2088090008	Soil	MVSVVVSIQMRKMFAEVRKMFLNARHAEQDVRERQASRNF
P3_DRAFT_00856040	2088090008	Soil	MVSVVVSVVESIRMRKMFVEMRSMFVNARHAEQDIRERQASKNF
Perma_A_C_02648160	2124908032	Soil	MVSVVSVVVSIRMRKMFAEVRKMFSNARHAEQDVRERQASR
P3_CLC_00961350	2124908041	Soil	MVSVVVSIRMRKMFAEVRKMFLNARHAEQDVRERQASKNF
P3_CLC_00224810	2124908041	Soil	SVVVSIRVRKMFAEVRKMFLNARHAEQDVRERQASWNF
P3_CLC_02771600	2124908041	Soil	VSIQMRKMFAEVRKMFSNARHAEQDVRERQASRNF
P3_CLC_01226640	2124908041	Soil	MNWLACSRTAMVSVVVSIRMRKMFVEVRKMFLNARDAEQ
P1_C_00868540	2140918006	Soil	MVSVVSVVVSIRMRKMFAEVRKMFSNARHAEQDVRE
A_all_C_01440530	2140918007	Soil	MVSVVVSIQMRKMFAEVRKMFSNARHAEQDVRERQASRNF
AL3A1W_10219473	3300000886	Permafrost	VSVVVSIQMRKVFAEVRKMLSNARHAEQDVRERQASKNF*
A2635W6_1087411	3300001324	Permafrost	MVSVIVSIHLRKMFVEVRKMFVNARHAEQDVRERQASRNF*
A21PFW6_10366611	3300001333	Permafrost	SVVVSIRMRKMFAEVRKIFVNARHAEQDVRERQPSKNF*
A2165W6_10005391	3300001334	Permafrost	MVSIVVSIRMRKMFAEVRNIFSNARDAEQDVRERQA
A3035W6_10303511	3300001359	Permafrost	VNWLTCSQIAMVSVVVSIQMRKMFAEARRMFVNARDAEQDVRERQASRNF*
A3035W6_11930892	3300001359	Permafrost	MVSVVVSIQMRKMFAEVRKMFVNARRAEQDVRERQASRNFCD*
JGI20195J14853_10031701	3300001402	Arctic Peat Soil	VPRGILVSVVVSIRMRKMFAEVRKMFSNARHAELDV
JGI20187J14854_10055743	3300001406	Arctic Peat Soil	QMVSVVVSIRRRKMFAQVRKMFLNARHAEQDVRERQAGRNF*
JGI20185J14861_10015224	3300001409	Arctic Peat Soil	MVSVVVSIRMRKMFAEVRNMFVNARHAEQDVREMQASXNF*
JGI20185J14861_10064082	3300001409	Arctic Peat Soil	MVSVVVSIRMRKMFAEVRKMFLNVRHAEQDVRERQAS
JGI20185J14861_10085602	3300001409	Arctic Peat Soil	VSVVVSIQMRKMFAEMRKMFSNTRDAEQDVREKAGDRNF
A3PFW1_101088442	3300001535	Permafrost	MNWLACSRIAMVSVVVSIRMRKMFAEARKMFSNARHAEQDVRERQASRNF*
A10PFW1_111213702	3300001538	Permafrost	MVSVVVSIRMRKMFAEVRKMFSNVRHAEQDVRERQASGNF*
P5cmW16_10279791	3300001664	Permafrost	VVSIQMRKVFAEVRKMHSNARHAEQDVRERQASKNF*
smpD1_11061761	3300002025	Permafrost And Active Layer Soil	MVSVVVSIRMRKMFAEVRKMLSNARQAEQDVRERQASRNF*
JGIcombinedJ26739_1002879653	3300002245	Forest Soil	VSVVVPIQMRKMFAEMRKMFSDARDAEQDVRGRQASKNF*
Ga0066677_108305801	3300005171	Soil	MVSVVVSIQMRKLFVEVRKIFVNARHAEQDVRERYASKNFSTEFMFA*
Ga0066678_100269665	3300005181	Soil	MVSVVVSIRMRKMFAKVRKMFLNARDAEQDGRETQASRNF*
Ga0070682_1015699921	3300005337	Corn Rhizosphere	MVSVGVSIPMRKLLSEVRKGFVNARGAEQDVREGQAGKNFRAEFMFV*
Ga0066687_100443102	3300005454	Soil	VSVVVSIHMRKMFAEVRKTFSNARHAEQDVRERQAGRNF*
Ga0070699_1000434282	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MVSVVVSIQMRKVFAEVRKMLTNARHAEQDVRERQASKNF*
Ga0066697_102242932	3300005540	Soil	MEAVSVVVSIRMRKMFTEVRKMFLDARLAEQDVR*
Ga0066695_103362552	3300005553	Soil	MEAVSVVVFIRMRKMFTEVRKMFLDARLAEQDVR*
Ga0066695_107529663	3300005553	Soil	VSLVVSIQIRKTFAEARKMLLNARDAQQDVRERQTSRNF*
Ga0066661_106629232	3300005554	Soil	MEAVSVVVSIRMRKMFTEVRKMFLDARLAERDVR*
Ga0066704_104402562	3300005557	Soil	MVSVVVSVHTREMFAEKRKMFSNARDAKQGVRETQASRNF*
Ga0066670_101195632	3300005560	Soil	VNRLACLRIAMVSVVASIYMRKVLAEVRMMFSNARDAEQGVRERQANRNF*
Ga0066699_109806141	3300005561	Soil	RRMVSVVVSIQRRKMFVNVCKMRLNAQRAEQDVRESQASKNF*
Ga0066708_101575182	3300005576	Soil	VNRHLCGSRLVSVVVSIQMRKMFAEVRKMFLNARDAEQDVRESQASGNF*
Ga0066708_101695363	3300005576	Soil	LVVSIQMRTMFMEVHRIFLNARFAEHGVRERQAS*
Ga0066708_102181331	3300005576	Soil	LPCIAMVSVVVSIRMRKMFAEVCKMFLNGRHAEQDVRERWASRNF*
Ga0066691_105039682	3300005586	Soil	VSVVVSIQMRKVFAEVRKMLSNARHAEQDVRERQA
Ga0066795_101433432	3300005938	Soil	VPRGILVSVVVSIRMREMFAEVRKMFLNARHAEQDVRERQASWNF*
Ga0066794_100141891	3300005947	Soil	VPRGILVSVVVSIRMRKMFAEVRKMFLNARHAEQDVRE
Ga0066794_101265962	3300005947	Soil	MVSVVVSIRMRKMFAEMRKMFINARHAEQDVRERQASRNF*
Ga0066794_101271801	3300005947	Soil	MVSVVVSIQMRKMFMEVRKMFFNARLAEQDARERQASRNF*
Ga0097691_10036989	3300006055	Arctic Peat Soil	MVSVVVSIQMRKMFVEVRKMFVNARHAEQDVRERQASRNF*
Ga0097691_10110392	3300006055	Arctic Peat Soil	MVSVVVSIRMRKMFAEMRKMFLNAQHAEQDVRERQVRLFLCLL*
Ga0097691_10683691	3300006055	Arctic Peat Soil	MVSVVVSIRMRKMFAEVRKMFLNARHAEQDVRERQASRNF*
Ga0075527_100478472	3300006640	Arctic Peat Soil	VVSVVVSVRMRKMFAQVRKIFVNVKHAEQDVRERQASRNF*
Ga0066660_100576452	3300006800	Soil	MEAVSVVVSIRMRKMFTEVRKMLLDARLAEQDVR*
Ga0066797_10266752	3300006864	Soil	LPAPLKFNADVPRGILVSVVVSIRMRKMFAEVRKMFAKARDAEQDVRERQASRNF*
Ga0066797_11753802	3300006864	Soil	VVSVVVSIQMRKMFAEMRKMFSNTRDAEQDVREKAGDRNF*
Ga0079219_100268111	3300006954	Agricultural Soil	MVAVVVSIHLRKMFAEVRKSFLNARGAEQDFRERQASKNL*
Ga0104323_1247861	3300007821	Soil	MAMVSVVVSIQMRKMFAEVRKMFVNARHAEQDVRE
Ga0066793_100140961	3300009029	Prmafrost Soil	RMVSVVVSIRMRKMFAEVRKMFAKARDAEQDVRERRASRNF*
Ga0066793_101923172	3300009029	Prmafrost Soil	MVSVVVSIRMRKMFAEVRKMFLNARHAEQDVRERQASWNF*
Ga0066793_106204883	3300009029	Prmafrost Soil	MVSVVVSIRMRKMFAEVRKMFAKARDAEQDVRERQASRNF
Ga0105855_12480091	3300009649	Permafrost Soil	MVSVVVSIQMRKMFAEVRKMFSNARDAEQDVRERQAS*
Ga0105854_10928302	3300009660	Permafrost Soil	VVSVVVSIQMRKVFAEVRKMLSNARHAEQDVRERQASKNF*
Ga0134126_112546572	3300010396	Terrestrial Soil	SPIAMVAVVVSIHLRKMFAEVRKSFLNARGAEQDFRERQASKNL*
Ga0137475_1015642	3300011227	Glacier Forefield Soil	MVSVVMSIRMRKMFAEVRKTFSNAQRAEQDVRERQANWNF*
Ga0137490_10006424	3300011246	Cryoconite Hole, Glacier Surface	MVSVVVSIRMRKMFAEVRKTFSNAQRAEQDVRERQANWNF*
Ga0120146_10045123	3300011992	Permafrost	MQRNAVVSVVLSIRLRKMFLEVRKMFLSARHAEQDVRERQASRNF*
Ga0120146_10093662	3300011992	Permafrost	MVSVVVSIQMRKMFALVRKMFLNARHAEQDVRERQASKNF*
Ga0120157_10070055	3300011994	Permafrost	MVSVVVSIRMRKMFAEARKMFSNARHAEQDVRERQASRNF*
Ga0120156_10062142	3300011996	Permafrost	MVSVVVSIRMRKMFAEVRKIFVNARHAEQDVRERQPSKNF*
Ga0120114_10035094	3300011998	Permafrost	SRVAMVSVVVSIRMRKMFAEVRKIFVNARHAEQDVRERQPSKNF*
Ga0120114_10536741	3300011998	Permafrost	MVSVVVSIQMRKMFAEVRKMFVNARRAEQDIRERQASRNFCD*
Ga0120167_10336291	3300012001	Permafrost	MQRNAVVSVVLSIRLRKMFLEVRKMFLSARHAEQDVRERQA
Ga0120163_10070245	3300012003	Permafrost	VAIVSVVVSIRMRKMFAEVRKIFVNARHAEQDVRERQPSKNF*
Ga0120163_10523492	3300012003	Permafrost	GVAMVSVVVSIRMRKMFAEVRKMFSNARDAEQDVRERQASRNF*
Ga0120134_10762261	3300012004	Permafrost	MVSVVVSIQTRKMLAEVRKMFVNARDAEQDVREGQASR
Ga0120118_10413371	3300012010	Permafrost	MQRNAVVSVVLSIRLRKMFLEVRKMFLSARHAEQD
Ga0120159_10143831	3300012014	Permafrost	MVSVVVSIQMRKMFALVRKMFLNARHAEQDVRERQAS
Ga0120159_10252192	3300012014	Permafrost	MVSIVVSIRMRKMFAKVRKMFLNARHAEQDVRERQASRNF*
Ga0120139_10497601	3300012019	Permafrost	MNWLTCSQIAMVSVVVSIRMRKMFAELRKMFSNARDAEQDVRERQASRNF*
Ga0137383_102368011	3300012199	Vadose Zone Soil	MEAVSVVVSIRMRKMFTAVRKMFLDARLAEQDVR*
Ga0137376_102248852	3300012208	Vadose Zone Soil	LIQRNVVVSVVVSIRLRKMFLEVRKMFLSARHAEQDVRE
Ga0137376_116008121	3300012208	Vadose Zone Soil	MVSVVVSIGMRKMFVAARKMILNARTAEQDVRERRAGRNF*
Ga0137370_100500652	3300012285	Vadose Zone Soil	VSVVVSIQMRKMFAEVHKMLSNARNAEQDVRERLASKNF*
Ga0137370_109540501	3300012285	Vadose Zone Soil	GTGSLPCIAMVSVVVSIRMRKMFAEVRKMFLYARDAERDVRERQASRNF*
Ga0150984_1165850913	3300012469	Avena Fatua Rhizosphere	MVSVVVSIQMRKMFVEVRKTISNARHAEQVFVKRQASKNF*
Ga0137359_102644721	3300012923	Vadose Zone Soil	MEAVSVVVSIRTRKMFTEVRKMFLDARIAEQDVR*
Ga0137419_108696832	3300012925	Vadose Zone Soil	MVSVVVSIQMRKMFVEVRKMFLNARRAEQDVRARQAYRNF*
Ga0120150_10013336	3300013294	Permafrost	MVSVVVSIQMRKMFAEVRKMFVKARHAEQDVRERQASRNF*
Ga0120150_10411961	3300013294	Permafrost	MQRNAVVSVVLSIRLRKMFLEVRKMFLSARHAEQDVRERQASRN
Ga0120150_11040491	3300013294	Permafrost	MQNSVVVSIRMRKNFAEVRKMFSNARDAEQDVRERQASR
Ga0120154_10049345	3300013501	Permafrost	VSIRMRKMFAKVRKVFLNARHAEQDVRERQASRNF*
Ga0120147_10152594	3300013758	Permafrost	AMVSVVVSIQMRKMFAEVRKMFVNARRAEQDVRERQASRNFCD*
Ga0120111_10033932	3300013764	Permafrost	MVSVVVSIQMRKMFADVRTMFVNARHAEQDVRERQASWNF*
Ga0120111_10107931	3300013764	Permafrost	MVSVVVSIQMRKMFALVRKMFLNARHAEQDVRERQASRNF*
Ga0120155_10362501	3300013768	Permafrost	MVSIVVSIRMRKMFAKVRKMFLNARHAEQDVRERQ
Ga0120158_103382802	3300013772	Permafrost	MVSVLVSIHMRKMFAEVRKMFSNARDAEQDVRERQANWHF*
Ga0120109_10235362	3300014052	Permafrost	VNWLTCSQIAMVSVVVSIQMRKMFAETRRMFVNARDAEQDVRERQASRNF*
Ga0120170_11078612	3300014823	Permafrost	MQRNAVVSVVLSIRLRKMFLEVRKMFLSARHAEQDV
Ga0167657_10146782	3300015079	Glacier Forefield Soil	MVSVVVSIRMRKMFAEVRKMFLNARDAEQDVRERQASLNF*
Ga0167657_10374602	3300015079	Glacier Forefield Soil	CAYGSRMVSVVVAIRMCKMFAEVRKMFVNARHAEQDVRERQASRNF*
Ga0167639_10448232	3300015080	Glacier Forefield Soil	MEAVSVVVSIGTRKMFTEVRKMFLDARLAEQDVR*
Ga0167646_100080413	3300015192	Glacier Forefield Soil	MVSVVVSIQMRIMFAEVRKMFVNARRAEQDVRERQASRNF*
Ga0167646_10436452	3300015192	Glacier Forefield Soil	MVFVVMSIRMRKMFAEVRKTFSNAQRAEQDVRERQGNWNF*
Ga0167668_10038533	3300015193	Glacier Forefield Soil	MVSVVVSIQIDEMFVQVRKMFLNARDAEQDVREKQAS*
Ga0167668_10049232	3300015193	Glacier Forefield Soil	MVSVVVSIQMRKMFGEVRKMFSNARHAEQDVRERHANRNFSAYFMFV*
Ga0167647_10049364	3300015199	Glacier Forefield Soil	MVSVVVSIQMRKMFVEVRKMFLNARYAEQDVRERQASMHF*
Ga0134083_105998711	3300017659	Grasslands Soil	SVVVSIQMRKMFAEVRKMFLNARDAEQNGRERQASRNF
Ga0180121_103861451	3300017695	Polar Desert Sand	MVSVVVSIRMRKMFAEVRKMFLNARHAEQDVRERQAS
Ga0184604_100010812	3300018000	Groundwater Sediment	MVSVVVSIGMRKMFAEVRRMFSNSRDAEQDVSERQASRNF
Ga0184608_100099212	3300018028	Groundwater Sediment	MVSVVVSIGMRKMFAEVRRMFSNARDAEQDVSERQASRNF
Ga0184620_103242932	3300018051	Groundwater Sediment	MVSVVVSIGMRKMFAEVRRMFSNARDAEQDLSERQASRNFCAYFMFV
Ga0184619_100030472	3300018061	Groundwater Sediment	MVSVVVSIQMRKMFAEVRKMFVKARRAEQVVRERQASRNF
Ga0184632_102237881	3300018075	Groundwater Sediment	MVSVVVSIQMRKMFAEVRKMFSNARDAEQDVRERQASKNF
Ga0066667_104829162	3300018433	Grasslands Soil	VSVVVSIQMRKMFVEVRKMFLNARDAEQDVRLVDNQRRRA
Ga0193729_11104502	3300019887	Soil	MVSVVVSIQMRKMFAEVRKMFSNARGAEQDVRERQASKNF
Ga0193729_11990961	3300019887	Soil	ESVVVSVRMHKMLVEVRKMFLNARHAEQDVRERQATRNF
Ga0193734_10421161	3300020015	Soil	DSLAVVVSVVVSIQMRKMFAEVCKMFVNVRHAEQDVRERQA
Ga0193719_100131532	3300021344	Soil	MVSVVVSIGMRKMFAEVRRMFSNARDAEQDLSERQASRNF
Ga0193699_103288152	3300021363	Soil	MADVSVVVSIQMRKIFAEVRKMFLNARDAEQDGRERQASKNF
Ga0222622_106833561	3300022756	Groundwater Sediment	VVSIVVSIQLRKIFVQVRKMFSNARGAEQDVRESQASKNF
Ga0207929_10007573	3300025505	Arctic Peat Soil	VVSVVVSIQMRKMFAEMRKMFSNTRDAEQDVREKAGDRNF
Ga0207929_10072232	3300025505	Arctic Peat Soil	MVSVVVSIRMRKMFAEVRNMFVNARHAEQDVREMQASWNF
Ga0207929_10339671	3300025505	Arctic Peat Soil	MVSVVVSIRMRKMFAEVRKMFANARQAEQDVCERQASMNF
Ga0207646_100093035	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVSVVVSIQMRKVFAEVRKMLTNARHAEQDVRERQASKNF
Ga0209880_10145312	3300026271	Soil	VPRGILVSVVVSIRMREMFAEVRKMFLNARHAEQDVRERQASWNF
Ga0209808_11817991	3300026523	Soil	QSKVPAEVNRHLCGSRLVSVVVSIQMRKMFAEVRKMFLNARDAEQDVRESQASGNF
Ga0209331_10464851	3300027603	Forest Soil	MVSVVVSIQLRKMFAEVRKMFSNARDAEQDVRERQASRNFCDL
Ga0209117_11055851	3300027645	Forest Soil	MVSVVVSIQLRKMFAEVRKMFSNARHAEQDVRERQASRNF
Ga0209217_10080372	3300027651	Forest Soil	MVSVVVSIQMRKMFAEVRKMFVNARRAEQDVRERQASRNF
Ga0209217_10302772	3300027651	Forest Soil	MVSIRMRKMFAEVRKMLVNARHAEQDVRERQASMNF
Ga0209118_10222742	3300027674	Forest Soil	MEAVSIVVSIRMRKMFTEVRKMFVNARRAEQDVRERQASRNF
Ga0209118_11100811	3300027674	Forest Soil	MVSVVVSIQMRKMFQMRKMFVEVRKMFSNARRAEQDVRES
Ga0209689_11465422	3300027748	Soil	RADFLVSVVVSIQMRKVFAEVRKMLSNARHAEQDVRERQARKNF
Ga0209177_100162281	3300027775	Agricultural Soil	VAAVVSINIRKMFAEVRKSFLNARGAEQDFRERQASKNL
Ga0307313_102583882	3300028715	Soil	TVSVVVSIRTRKTFAEVRKMFSNARHAEQDVREMQAS
Ga0308194_101218331	3300031421	Soil	LKEATQVMVSVVVSIQMRKIFVQVRKMFSNAPDAEQDVRER
Ga0307471_1005441471	3300032180	Hardwood Forest Soil	VNSPLARGGVVSAVVSIRMREIFAEVRKMFSNARDAEQDVRE