NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F057660

Metagenome Family F057660

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F057660
Family Type Metagenome
Number of Sequences 136
Average Sequence Length 45 residues
Representative Sequence MMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR
Number of Associated Samples 114
Number of Associated Scaffolds 136

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.05 %
% of genes near scaffold ends (potentially truncated) 92.65 %
% of genes from short scaffolds (< 2000 bps) 91.18 %
Associated GOLD sequencing projects 102
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (94.118 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(11.029 % of family members)
Environment Ontology (ENVO) Unclassified
(52.206 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(72.059 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 28.17%    β-sheet: 0.00%    Coil/Unstructured: 71.83%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 136 Family Scaffolds
PF00083Sugar_tr 44.12
PF03239FTR1 5.88
PF01979Amidohydro_1 5.88
PF07690MFS_1 5.15
PF02954HTH_8 2.94
PF00459Inositol_P 0.74
PF10035DUF2179 0.74
PF05598DUF772 0.74
PF01380SIS 0.74
PF04055Radical_SAM 0.74
PF13193AMP-binding_C 0.74
PF02452PemK_toxin 0.74
PF13544Obsolete Pfam Family 0.74
PF06282DUF1036 0.74
PF12796Ank_2 0.74
PF04255DUF433 0.74
PF10049DUF2283 0.74
PF02771Acyl-CoA_dh_N 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 136 Family Scaffolds
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.74
COG2337mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin moduleDefense mechanisms [V] 0.74
COG2442Predicted antitoxin component of a toxin-antitoxin system, DUF433 familyDefense mechanisms [V] 0.74
COG5480Uncharacterized membrane proteinFunction unknown [S] 0.74


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms94.12 %
UnclassifiedrootN/A5.88 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886012|MBSR1b_contig_12444246All Organisms → cellular organisms → Bacteria967Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101450402All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6734Open in IMG/M
3300001139|JGI10220J13317_11058157All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300004643|Ga0062591_100698768All Organisms → cellular organisms → Bacteria917Open in IMG/M
3300004643|Ga0062591_102446027All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300005294|Ga0065705_10777109All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300005328|Ga0070676_10450862All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6905Open in IMG/M
3300005338|Ga0068868_101153931All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300005340|Ga0070689_100222523All Organisms → cellular organisms → Bacteria1549Open in IMG/M
3300005343|Ga0070687_101218719All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300005364|Ga0070673_101328691All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300005366|Ga0070659_100564363All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium975Open in IMG/M
3300005441|Ga0070700_100023070All Organisms → cellular organisms → Bacteria3638Open in IMG/M
3300005444|Ga0070694_101113523All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300005444|Ga0070694_101172525All Organisms → cellular organisms → Bacteria → Acidobacteria643Open in IMG/M
3300005458|Ga0070681_11754654All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium547Open in IMG/M
3300005459|Ga0068867_100725056All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300005467|Ga0070706_100308910All Organisms → cellular organisms → Bacteria1475Open in IMG/M
3300005536|Ga0070697_101367503All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6632Open in IMG/M
3300005544|Ga0070686_100261750All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1268Open in IMG/M
3300005545|Ga0070695_100409411All Organisms → cellular organisms → Bacteria1030Open in IMG/M
3300005548|Ga0070665_101859358All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium608Open in IMG/M
3300005577|Ga0068857_100483427All Organisms → cellular organisms → Bacteria1161Open in IMG/M
3300005578|Ga0068854_101231172All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300005617|Ga0068859_101546052All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300005617|Ga0068859_101834217All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300005719|Ga0068861_101269727All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium715Open in IMG/M
3300005840|Ga0068870_10484180All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300005840|Ga0068870_11080272All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300005841|Ga0068863_101580343All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300005843|Ga0068860_100049249All Organisms → cellular organisms → Bacteria4013Open in IMG/M
3300005843|Ga0068860_101781907All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300006031|Ga0066651_10788485All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300006169|Ga0082029_1063277All Organisms → cellular organisms → Bacteria1057Open in IMG/M
3300006755|Ga0079222_11071935All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300006806|Ga0079220_10296325All Organisms → cellular organisms → Bacteria997Open in IMG/M
3300006806|Ga0079220_10959960All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300006845|Ga0075421_101737330All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300006847|Ga0075431_100214417All Organisms → cellular organisms → Bacteria1965Open in IMG/M
3300006852|Ga0075433_10707291All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300006852|Ga0075433_10741278All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300006852|Ga0075433_10982397All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300006852|Ga0075433_11108961All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300006852|Ga0075433_11426109All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300006853|Ga0075420_101122967All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300006854|Ga0075425_103175410All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300006871|Ga0075434_101498762All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium684Open in IMG/M
3300006880|Ga0075429_101037262All Organisms → cellular organisms → Bacteria717Open in IMG/M
3300006881|Ga0068865_102099439All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300006894|Ga0079215_10214542All Organisms → cellular organisms → Bacteria987Open in IMG/M
3300006904|Ga0075424_100716947All Organisms → cellular organisms → Bacteria1068Open in IMG/M
3300006918|Ga0079216_11049672All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300007004|Ga0079218_10385294All Organisms → cellular organisms → Bacteria1186Open in IMG/M
3300009092|Ga0105250_10429692All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300009093|Ga0105240_12633335All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300009098|Ga0105245_11513683All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300009101|Ga0105247_10128378All Organisms → cellular organisms → Bacteria1650Open in IMG/M
3300009137|Ga0066709_103654511All Organisms → cellular organisms → Bacteria → Acidobacteria558Open in IMG/M
3300009147|Ga0114129_10907813All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium1116Open in IMG/M
3300009147|Ga0114129_11037616All Organisms → cellular organisms → Bacteria1030Open in IMG/M
3300009147|Ga0114129_11587726All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300009177|Ga0105248_11613943All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300009610|Ga0105340_1525635Not Available529Open in IMG/M
3300009840|Ga0126313_10207885All Organisms → cellular organisms → Bacteria1504Open in IMG/M
3300010036|Ga0126305_10249554All Organisms → cellular organisms → Bacteria1140Open in IMG/M
3300010041|Ga0126312_10369575All Organisms → cellular organisms → Bacteria1018Open in IMG/M
3300010041|Ga0126312_10567037All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300010045|Ga0126311_11819390All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium516Open in IMG/M
3300010360|Ga0126372_10356316All Organisms → cellular organisms → Bacteria1315Open in IMG/M
3300010375|Ga0105239_10695913All Organisms → cellular organisms → Bacteria1162Open in IMG/M
3300010397|Ga0134124_11238879All Organisms → cellular organisms → Bacteria767Open in IMG/M
3300010400|Ga0134122_11717872All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium656Open in IMG/M
3300010400|Ga0134122_12999811All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium526Open in IMG/M
3300011119|Ga0105246_11348839All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300011119|Ga0105246_12156190All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300012022|Ga0120191_10046940All Organisms → cellular organisms → Bacteria → Acidobacteria739Open in IMG/M
3300012896|Ga0157303_10246750All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300012899|Ga0157299_10241292All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300012918|Ga0137396_10100594All Organisms → cellular organisms → Bacteria → Acidobacteria2063Open in IMG/M
3300012922|Ga0137394_11013915All Organisms → cellular organisms → Bacteria689Open in IMG/M
3300012922|Ga0137394_11512488Not Available530Open in IMG/M
3300012923|Ga0137359_10068391All Organisms → cellular organisms → Bacteria3103Open in IMG/M
3300012929|Ga0137404_11306461All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium669Open in IMG/M
3300012930|Ga0137407_12044401All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium547Open in IMG/M
3300012944|Ga0137410_11233138All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium645Open in IMG/M
3300012948|Ga0126375_11647022All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300012960|Ga0164301_10186035All Organisms → cellular organisms → Bacteria1310Open in IMG/M
3300013297|Ga0157378_11144280All Organisms → cellular organisms → Bacteria816Open in IMG/M
3300013306|Ga0163162_10759570All Organisms → cellular organisms → Bacteria1088Open in IMG/M
3300013754|Ga0120183_1016421All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium587Open in IMG/M
3300014325|Ga0163163_10243578All Organisms → cellular organisms → Bacteria1848Open in IMG/M
3300014968|Ga0157379_11513425All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300015054|Ga0137420_1382484All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1929Open in IMG/M
3300015264|Ga0137403_10670297All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium899Open in IMG/M
3300015371|Ga0132258_12641690All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_61254Open in IMG/M
3300015374|Ga0132255_100125016All Organisms → cellular organisms → Bacteria3543Open in IMG/M
3300017792|Ga0163161_10275530All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_61318Open in IMG/M
3300018076|Ga0184609_10528078All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300018422|Ga0190265_12550430All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium609Open in IMG/M
3300018476|Ga0190274_12711406All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300019487|Ga0187893_10164868All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1771Open in IMG/M
3300025735|Ga0207713_1237626All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300025911|Ga0207654_10470693All Organisms → cellular organisms → Bacteria884Open in IMG/M
3300025912|Ga0207707_10325025All Organisms → cellular organisms → Bacteria1328Open in IMG/M
3300025918|Ga0207662_10607288All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300025932|Ga0207690_11734708All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300025933|Ga0207706_10441830All Organisms → cellular organisms → Bacteria1126Open in IMG/M
3300025933|Ga0207706_11497121All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium551Open in IMG/M
3300025936|Ga0207670_10598042All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300025938|Ga0207704_10257230All Organisms → cellular organisms → Bacteria1314Open in IMG/M
3300025938|Ga0207704_11958980All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300025938|Ga0207704_11969661All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300025941|Ga0207711_10404559All Organisms → cellular organisms → Bacteria1268Open in IMG/M
3300025941|Ga0207711_11269606All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300025942|Ga0207689_10204282All Organisms → cellular organisms → Bacteria1631Open in IMG/M
3300025960|Ga0207651_10121500All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1982Open in IMG/M
3300025981|Ga0207640_10058219All Organisms → cellular organisms → Bacteria2545Open in IMG/M
3300025996|Ga0208777_1010479All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300026035|Ga0207703_10400490All Organisms → cellular organisms → Bacteria1273Open in IMG/M
3300026035|Ga0207703_12160276All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300026041|Ga0207639_10243641All Organisms → cellular organisms → Bacteria1564Open in IMG/M
3300026046|Ga0208780_1025617All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium548Open in IMG/M
3300026078|Ga0207702_12382457All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae517Open in IMG/M
3300026089|Ga0207648_11406314All Organisms → cellular organisms → Bacteria → Acidobacteria656Open in IMG/M
3300026142|Ga0207698_10604521All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_61081Open in IMG/M
3300028380|Ga0268265_12216551All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300028381|Ga0268264_12513950All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300031731|Ga0307405_11624507Not Available571Open in IMG/M
3300032004|Ga0307414_10028926All Organisms → cellular organisms → Bacteria3601Open in IMG/M
3300032012|Ga0310902_10410240All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300032211|Ga0310896_10337350All Organisms → cellular organisms → Bacteria789Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere11.03%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere8.09%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere7.35%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil4.41%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.41%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.41%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.41%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.68%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil3.68%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere3.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.94%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.21%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.21%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.21%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.21%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.47%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.47%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial1.47%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.47%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.47%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.47%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.47%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.47%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.47%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.74%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.74%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.74%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.74%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.74%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.74%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.74%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886012Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012022Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013754Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C1.rep2EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300025735Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025996Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301 (SPAdes)EnvironmentalOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026046Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0087.000058002162886012Miscanthus RhizosphereAKEMMEARVDAVFDSLRQDSAFLALTRGADGKLQMPMRNMTGTQNR
INPhiseqgaiiFebDRAFT_10145040213300000364SoilEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPMGNMRGTQQQQQ*
JGI10220J13317_1105815723300001139SoilERYPAVREKEMMEARVDFVFDSLREDSEFLALTSGADGKLQMPMKSMEMR*
Ga0062591_10069876813300004643SoilARVDAVFDSLRQDSQFLALTSGADGKLQMPMRNMTGSSNRD*
Ga0062591_10244602723300004643SoilMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR*
Ga0065705_1077710923300005294Switchgrass RhizosphereRVDAVFDSLRQDSQFLALTSGADGKLRMPMRNMTGSSNRD*
Ga0070676_1045086223300005328Miscanthus RhizosphereAKEMMEAGVDAVFDSLRQDSAFLALTSGADGRLQMPMKMGGTQNQNQ*
Ga0068868_10115393123300005338Miscanthus RhizosphereKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0070689_10022252323300005340Switchgrass RhizosphereVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR*
Ga0070687_10121871913300005343Switchgrass RhizosphereRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0070673_10132869113300005364Switchgrass RhizosphereAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0070659_10056436313300005366Corn RhizosphereERYQTVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0070700_10002307043300005441Corn, Switchgrass And Miscanthus RhizosphereAKEMMEARVDAVFDSLRSDKAFLALTKGADGMLPMPMKDMRGNQNQQR*
Ga0070694_10111352313300005444Corn, Switchgrass And Miscanthus RhizosphereAVRAKEMMEARVDAVFDSLRNDRGFMALTKGADGMLPMPMRDMRGNQNQQR*
Ga0070694_10117252513300005444Corn, Switchgrass And Miscanthus RhizosphereAVREKEMMEARVDAVFDSLRADPAFLALTRNADGRLQMPMKPMGVRSGAIR*
Ga0070681_1175465413300005458Corn RhizosphereEARVDAVFDSLRQDSQFLALTSGADGKLPMPMKPLTGTMQNQR*
Ga0068867_10072505623300005459Miscanthus RhizosphereRVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0070706_10030891013300005467Corn, Switchgrass And Miscanthus RhizosphereSKEMMEARVDAVFDTLREDAAFVALTRGADGKLPMPMRDVKTMQNRER*
Ga0070697_10136750313300005536Corn, Switchgrass And Miscanthus RhizosphereYQAVRAKEMMEARVDAVFDSLREDAAFMALTRSADGKLPMPMRDAKGVQNR*
Ga0070686_10026175013300005544Switchgrass RhizosphereVRAKEMMEARVDAVFDSLRSDKAFLALTKGADGMLPMPMKDMRGNQNQQR*
Ga0070695_10040941123300005545Corn, Switchgrass And Miscanthus RhizosphereKEMMEARVDAVFDSLRQDSQFLALTKGADGKLPMPMKNMTGTMQNQR*
Ga0070665_10185935813300005548Switchgrass RhizosphereRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKEMKGTMQNQ*
Ga0068857_10048342713300005577Corn RhizosphereRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKNMTGSANRD*
Ga0068854_10123117223300005578Corn RhizosphereVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR*
Ga0068859_10154605213300005617Switchgrass RhizosphereMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0068859_10183421713300005617Switchgrass RhizosphereTVRAKEMMEARVDAVFDSLRYDSSFLALTSGADGRLQMPMRDMRGMPNR*
Ga0068861_10126972733300005719Switchgrass RhizosphereQAVREKEMMEARVDVVFDSLRQDRTFLALTSGADGKLPMPMPGMGTGTRENR*
Ga0068870_1048418023300005840Miscanthus RhizosphereYHAVRAKEMMEARVDAVFDSLRQDSAFLALTNGADGKLQMPMKNMTGSSNRD*
Ga0068870_1108027223300005840Miscanthus RhizosphereAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLRMPMRNMTGSSNRD*
Ga0068863_10158034313300005841Switchgrass RhizosphereARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTANQK*
Ga0068860_10004924913300005843Switchgrass RhizosphereEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0068860_10178190713300005843Switchgrass RhizosphereFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0066651_1078848513300006031SoilEMMEARVDAVFDSLRQDSAFLALTSGADCRLPMPMKNMTGMPNRN*
Ga0082029_106327723300006169Termite NestRAKEMMEARVDAVFDSLRQDSAFLALTRGADGKLQMPMRNMTGTQNR*
Ga0079222_1107193523300006755Agricultural SoilAVFDSLRQDSDFLALTSGADGRLPMPMRNLTGSSNR*
Ga0079220_1029632513300006806Agricultural SoilVRAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLPMPMRPMTGTMQNQR*
Ga0079220_1095996023300006806Agricultural SoilRVDAVFDSLRQDSQFLALTSGADGKLPMPMKSMTGTMQNQR*
Ga0075421_10173733023300006845Populus RhizosphereVDAVFDSLRQDSDFLALTSGADGKLQMPMRHITGSANRD*
Ga0075431_10021441733300006847Populus RhizosphereFDSLRQDSDFLALTSGADGKLQMPMRHITGSANRD*
Ga0075433_1070729113300006852Populus RhizosphereRVDAVFDSLRQDSSFLALTSGADGKLQMPMRPMTGTNNR*
Ga0075433_1074127823300006852Populus RhizosphereVRSKEMMEARVDAVFDSLRQDSSFLALTSGADGRLQMPMRDVKGMQQQR*
Ga0075433_1098239723300006852Populus RhizosphereFDSLRQDSAFLALTSGADGKLQMPMRNMTGTTNRD*
Ga0075433_1110896123300006852Populus RhizosphereRVDAVFDSLRQDSAFLALTSGADGKLRMPMRNMTGSANPD*
Ga0075433_1142610923300006852Populus RhizosphereDSLRQDSKFLALTSGADGKLQMPMKNMTGTMNQE*
Ga0075420_10112296713300006853Populus RhizosphereYEAVREKEMMEARVDAVFDSIRYDSSFLALTSGADGKLQMPMRGMPGMQNR*
Ga0075425_10317541023300006854Populus RhizosphereEMMEARVDAVFDSLRQDSDFLALTSGADGKLQMPMKNMTGSSNR*
Ga0075434_10149876213300006871Populus RhizosphereEARVDAVFDSLRQDSSFLALTSGADGRLQMPMRDVKGMQQQR*
Ga0075429_10103726223300006880Populus RhizosphereQAVRAKEMMEARVDAVFDSLRQDSTFLALTSGADGKLQMPMKNMTGSTNRD*
Ga0068865_10209943923300006881Miscanthus RhizosphereVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTTNRD*
Ga0079215_1021454223300006894Agricultural SoilEMMEARVDAVFDSLRQDSAFLALTSGADGKLAMPMKNMTGTMNQR*
Ga0075424_10071694713300006904Populus RhizosphereVRAKEMMEARVDAVFDSLRQDSTFLALTSGADGKLQMPMKNMSGTMNQE*
Ga0079216_1104967213300006918Agricultural SoilARVDAVFDSLRQDSAFLALTSGADGKLPMPMKNMTGTMNQR*
Ga0079218_1038529413300007004Agricultural SoilVDAVFETLRQDSQFLALTSGADGKLMMPMPMKDTRSMQNQQR*
Ga0105250_1042969213300009092Switchgrass RhizosphereVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0105240_1263333513300009093Corn RhizosphereMMEARVDAVFDSLRQDSDFLALTSSADGTLQMPMRNTTGTQNR*
Ga0105245_1151368313300009098Miscanthus RhizosphereDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR*
Ga0105247_1012837813300009101Switchgrass RhizosphereYERYQAVRAKEMMEARVDAVFDSLRQDSDFLALTSGADGKLQMPMRNTTGTQNR*
Ga0066709_10365451113300009137Grasslands SoilSVRAKEMMEARVDAVFDSIRTDREFVALTNGADGRLQMPMKGMNGARDNR*
Ga0114129_1090781323300009147Populus RhizosphereAKEMMEARVDAVFDSLREDPSFVALTRGADGKLPMPMKPMGGRSGNNN*
Ga0114129_1103761623300009147Populus RhizosphereAKEMMEARVDAVFDSLRQDSDFLALTSGADGKLQMPMRHITGSANRD*
Ga0114129_1158772623300009147Populus RhizosphereAVRAKEMMEARVDAVFDSLRQDAGFLALTRGADGKLAMPMKNMGTPSGPNR*
Ga0105248_1161394323300009177Switchgrass RhizosphereDSIRQDSAFLALTSGADGRLQMPMKEMKGTMQNQ*
Ga0105340_152563513300009610SoilKEMMEARVDAVFSSLLSDPKFMALTADADNRLQMPSMKGMGGGR*
Ga0126313_1020788523300009840Serpentine SoilYQAVRAKEMMEARVDAVFDSLRKDSAFLALTRGADGKLQMPMRNMTGTQNR*
Ga0126305_1024955413300010036Serpentine SoilVDAVFDSLRKDSAFLALTRGADGKLQMPMRNMTGTQNR*
Ga0126312_1036957513300010041Serpentine SoilEMMEARVDAVFDSLRYDTAFLALTSGADGKLQMPMRDMRGMQNR*
Ga0126312_1056703713300010041Serpentine SoilERYQAVRAKEMMEARVDAVFDSLRQDSTFLALTSGADGKLQMPMKNMTGSSNRD*
Ga0126311_1181939023300010045Serpentine SoilFDSVRYDSTFLALTSGADGRLQMPMRDMRGMPNR*
Ga0126372_1035631613300010360Tropical Forest SoilFDSLRQDSSFLALTSGADGRLQMPMRDVKGMQQQR*
Ga0105239_1069591323300010375Corn RhizosphereAVFDSLRQDSAFLALTSGADGRLQMPMKNMTGSANRD*
Ga0134124_1123887923300010397Terrestrial SoilMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR*
Ga0134122_1171787213300010400Terrestrial SoilRYQSVRAKEMMEARVDAVFDSLRQDSAFLALTKGADGRLQMPMKGMTGTQQNQ*
Ga0134122_1299981113300010400Terrestrial SoilKEMMEARVDAVFDSLRSDQAFLALTSGADGRLQMPMKIMAPGSRENQ*
Ga0105246_1134883923300011119Miscanthus RhizosphereEMMEARVDAVFDSLRQDSAFFALTSGADGRLQMPMRNMTGTQNR*
Ga0105246_1215619023300011119Miscanthus RhizosphereAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTANQD*
Ga0120191_1004694013300012022TerrestrialESIRQDHEFMELTSGADGKLQMPMRDMNGRSENR*
Ga0137363_1125076513300012202Vadose Zone SoilAVFDTLREDPSFAALTRGADGKLPLPMRDMKTMQNRER*
Ga0137360_1008570513300012361Vadose Zone SoilEMMEARVDAVFDTLREDPSFVALTRGADGKLPMPMRDMKTMQNRER*
Ga0137358_1000543273300012582Vadose Zone SoilVFDTLREDAAFIALTRGADGKLPMPMRDVKTMQNRER*
Ga0157303_1024675023300012896SoilYQTVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKNMTGSGNRD*
Ga0157299_1024129223300012899SoilDAVFDSLRQDSSFLALTRGADGKLPMPMKNMTGTMQNNQR*
Ga0137396_1010059413300012918Vadose Zone SoilYQSVRAKEMMEARVDAVFDSLRADPGFIALTRNADGRLPMPMKGMGSQPGTNK*
Ga0137394_1101391513300012922Vadose Zone SoilAVRSKEMMEARVDAVFDSLRQDSAFLALTRDADGRLMMPMKSMGSPSENK*
Ga0137394_1151248823300012922Vadose Zone SoilEMMEARVDAVFDSLRTDPGFLALTSGADGRLQMPMKNMGQRQ*
Ga0137359_1006839113300012923Vadose Zone SoilQAVRSKEMMEARVDAVFDTLREDAAFVALTRGADGKLPMPMRDVKTMQNRER*
Ga0137404_1130646113300012929Vadose Zone SoilVFDSLRQDSEFLALTRHADGRLMMPMKNMGTGSENK*
Ga0137407_1204440113300012930Vadose Zone SoilVRTKEMMEARVDAVFDSLREDPAFLALTQGADGKLAMPMRDVKTMQTPER*
Ga0137410_1123313823300012944Vadose Zone SoilMMEARVDAVFDSLRSDSAFLALTSGADGRLPMPTPMKGMGGSRENR*
Ga0126375_1164702213300012948Tropical Forest SoilMMEARVDAVFDSVRSDSEFMALTSGADGKLPMPMRDVKGTQNQNR*
Ga0164301_1018603523300012960SoilQAVRTKEMMEARVDAVFDSLRQDSQFLALTSGADGKLPMPMKNMTGTMQNQR*
Ga0157378_1114428023300013297Miscanthus RhizosphereHTVRAKESMEARVDAVLDSIRYDSGFLALTSGADGKLQMPMRGMKDMRSMQNQDR*
Ga0163162_1075957023300013306Switchgrass RhizosphereRVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR*
Ga0120183_101642113300013754TerrestrialMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTANQD*
Ga0163163_1024357823300014325Switchgrass RhizosphereAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKNTTGSANRD*
Ga0157379_1151342513300014968Switchgrass RhizosphereERYHAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR*
Ga0137420_138248413300015054Vadose Zone SoilYKAVRSKEMMEARVDAVFDSLREDPKFLALTSGADGRLQMPMKNMGGARENR*
Ga0137403_1067029713300015264Vadose Zone SoilTKEMMEARVDAVFDSLREDPAFLALTQGADGKLAMPMRDVKTMQTPER*
Ga0132258_1264169023300015371Arabidopsis RhizosphereEARVDAVFDSLRQDSSFLALTSGADGRLQMPTGNMKGMQQK*
Ga0132255_10012501653300015374Arabidopsis RhizosphereRYQAVRAKEMMEARVDAVFDSLRNDRGFMALTKGADGMLPMPMRDMRGNQNQQR*
Ga0163161_1027553023300017792Switchgrass RhizosphereYQSVRAKEMMEARVDAVFDSIRQDSAFLALTSGADGRLQMPMKMGGTQNQNQ
Ga0184605_1001073123300018027Groundwater SedimentMMEARVDTVFDSLREDAAFVALTRGADGKLPMPMKDVKGMQNRER
Ga0184609_1052807813300018076Groundwater SedimentMMEARVDAVFDSLREDPAFVALTVGADGKLPMPMKGMNGSRDNR
Ga0190265_1255043013300018422SoilMMEARVDAVFDSLRSDSAFLALTKGADGMLQMPMRDMRGNQNQQRN
Ga0190274_1271140613300018476SoilDAVFDSLRQDSAFLALTRGADGKLQMPMRNMTGTQNR
Ga0187893_1016486813300019487Microbial Mat On RocksVFDSLREDSAFLALTSGADGKLQMPMKGMNMNGSRENR
Ga0207713_123762613300025735Switchgrass RhizosphereKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKNMTGSANRD
Ga0207654_1047069313300025911Corn RhizosphereMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMKNMSGSANRD
Ga0207707_1032502513300025912Corn RhizosphereMEARVDAVFDSLRQDSKFLALTSGADGRLQMPMRNMTGSSNRD
Ga0207662_1060728813300025918Switchgrass RhizosphereEARVDAVFDSLRQDSAFLALTRGADGRLQMPMKNMTGSANRD
Ga0207690_1173470823300025932Corn RhizosphereRVDAVFDSLRQDSEFLALTSGADGRLQMPMRNMTGSANKD
Ga0207706_1044183013300025933Corn RhizosphereYPAVREKEMMEARVDFVFDSLREDSEFLALTSGADGKLQMPMKSMEMR
Ga0207706_1149712113300025933Corn RhizosphereERYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMKNMTGSTNRD
Ga0207670_1059804223300025936Switchgrass RhizosphereRAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR
Ga0207704_1025723013300025938Miscanthus RhizosphereLLVAFARVDAVFDSLRNDRGFMALTKGADGMLPMPMRDMRGNQNQQR
Ga0207704_1195898023300025938Miscanthus RhizosphereAKEMMEARVDAVFDSLRQDSDFLALTSGADGKLQMPMRNTTGTQNR
Ga0207704_1196966123300025938Miscanthus RhizosphereMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTANQD
Ga0207711_1040455923300025941Switchgrass RhizosphereAVRAKEMMEARVDAVFDSLRQDSQFLALTSGADGKLRMPMRNMTGSSNRD
Ga0207711_1126960613300025941Switchgrass RhizosphereVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR
Ga0207689_1020428243300025942Miscanthus RhizosphereVRAKEMMEARVDAVFDSLRQDSEFLALTNGADGKLRMPMRNMTGSSNRD
Ga0207651_1012150033300025960Switchgrass RhizosphereAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMRNMTGTQNR
Ga0207640_1005821913300025981Corn RhizosphereYHAVRAPEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMRNMTGTQNR
Ga0208777_101047913300025996Rice Paddy SoilRYQAVRAKEMMEARVDAVFDTLRQDSAFLALTSGADGKLQMPMRNITGTQNR
Ga0207703_1040049013300026035Switchgrass RhizosphereVDAVFDSLRQDSNFLALTSGADGKLQMPMRNMTGTQNR
Ga0207703_1216027613300026035Switchgrass RhizosphereYERYPAVREKEMMEARVDFVFDSLREDSEFLALTSGADGKLQMPMKSMEMR
Ga0207639_1024364113300026041Corn RhizosphereVDAVFDSLRQDSAFLALTSGADGRLQMPMKNMTGSANRD
Ga0208780_102561713300026046Natural And Restored WetlandsKEMMEARVDAVFDSLRQDSAFLALTSGADGKLMMPMRPLTSTANQH
Ga0207702_1238245723300026078Corn RhizosphereMMEARVDAVFDSLRQDSSFLALTSRADGKLQMPMRPMTGTNNR
Ga0207648_1140631423300026089Miscanthus RhizosphereMMEARVDAVFDSLRNDRGFMALTKGADGMLPMPMRDMRGNQN
Ga0207648_1164384913300026089Miscanthus RhizosphereRVDAVFDSLRADSDFLALTRQADGKLPMPEPMKGMNMPSQNR
Ga0207698_1060452123300026142Corn RhizosphereAVFDSLRQDSAFLALTSGADGRLQMPMKMGGTQNQNQ
Ga0268265_1221655113300028380Switchgrass RhizosphereMMEARVDAVFDSLREDPEFLALTSDADGKLQMPMKSMEMRQ
Ga0268264_1251395023300028381Switchgrass RhizosphereEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKNMTGSANRD
Ga0307405_1162450723300031731RhizosphereFDSLREDTAFVALTSGADGKLPIPMKGMNGSMQNR
Ga0307414_1002892613300032004RhizosphereYQAVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGKLQMPMKNMTGSSNR
Ga0310902_1041024023300032012SoilEMMEARVDAVFDSIRYDSGFLALTSGADGKLQMPMRGMKDMRSMQNQDR
Ga0310896_1033735013300032211SoilQTVRAKEMMEARVDAVFDSIRYDSGFLALTSGADGKLQMPMRGMKDMRSMQNQDR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.