Metagenome / Metatranscriptome Family F057570

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057570
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	54 residues
Representative Sequence	LSHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCV
Number of Associated Samples	123
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.15 %
% of genes near scaffold ends (potentially truncated)	92.65 %
% of genes from short scaffolds (< 2000 bps)	89.71 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.971 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.235 % of family members)
Environment Ontology (ENVO)	Unclassified (29.412 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.088 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.71% β-sheet: 0.00% Coil/Unstructured: 37.29%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF00076	RRM_1	35.29
PF00109	ketoacyl-synt	27.21
PF02801	Ketoacyl-synt_C	18.38
PF00817	IMS	4.41
PF01258	zf-dskA_traR	0.74
PF00154	RecA	0.74
PF00471	Ribosomal_L33	0.74
PF01168	Ala_racemase_N	0.74
PF01041	DegT_DnrJ_EryC1	0.74
PF00572	Ribosomal_L13	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	4.41
COG0102	Ribosomal protein L13	Translation, ribosomal structure and biogenesis [J]	0.74
COG0267	Ribosomal protein L33	Translation, ribosomal structure and biogenesis [J]	0.74
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.74
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.74
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.74
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.74
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.74
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.74
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.74
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.97 %
Unclassified	root	N/A	11.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.97 %
Unclassified	root	N/A	11.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.97 %
Unclassified	root	N/A	11.03 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	64.71 %
Unclassified	root	N/A	11.03 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	64.71 %
Unclassified	root	N/A	11.03 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	50.74 %
Unclassified	root	N/A	11.03 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	10.29 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.47 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.74 %
Unclassified	root	N/A	11.03 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	9.56 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.47 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.74 %
Unclassified	root	N/A	11.03 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	9.56 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.47 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.74 %
Unclassified	root	N/A	11.03 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	5.15 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	4.41 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	1.47 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.74 %
Unclassified	root	N/A	11.03 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5.15 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4.41 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	0.74 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.74 %
Unclassified	root	N/A	11.03 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5.15 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4.41 %
Verrucomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp.	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02IYXPB	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
2170459005\|F1BAP7Q02IF7JH	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
2170459010\|GIO7OMY01BQ3AV	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1016902	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	933	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1024582	Not Available	510	Open in IMG/M
3300001431\|F14TB_100268444	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1012	Open in IMG/M
3300001686\|C688J18823_10009651	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	6281	Open in IMG/M
3300004081\|Ga0063454_100182904	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300004114\|Ga0062593_103145846	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300005166\|Ga0066674_10089040	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300005179\|Ga0066684_10265747	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1130	Open in IMG/M
3300005180\|Ga0066685_10339510	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300005181\|Ga0066678_10639178	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	708	Open in IMG/M
3300005187\|Ga0066675_10293472	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300005295\|Ga0065707_10786325	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300005332\|Ga0066388_101366018	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300005332\|Ga0066388_102248863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	985	Open in IMG/M
3300005332\|Ga0066388_103584502	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	792	Open in IMG/M
3300005333\|Ga0070677_10404056	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	721	Open in IMG/M
3300005355\|Ga0070671_101146205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	683	Open in IMG/M
3300005447\|Ga0066689_10885082	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300005540\|Ga0066697_10020724	All Organisms → cellular organisms → Bacteria	3557	Open in IMG/M
3300005544\|Ga0070686_101128373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	648	Open in IMG/M
3300005575\|Ga0066702_10108315	All Organisms → cellular organisms → Bacteria	1598	Open in IMG/M
3300005719\|Ga0068861_100238596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1545	Open in IMG/M
3300005764\|Ga0066903_101198668	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300005842\|Ga0068858_101077630	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	788	Open in IMG/M
3300006031\|Ga0066651_10029996	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp.	2425	Open in IMG/M
3300006034\|Ga0066656_10825718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300006175\|Ga0070712_100297847	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300006175\|Ga0070712_101705433	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	551	Open in IMG/M
3300006573\|Ga0074055_11321284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300006575\|Ga0074053_11545305	Not Available	522	Open in IMG/M
3300006576\|Ga0074047_10262742	Not Available	563	Open in IMG/M
3300006791\|Ga0066653_10129851	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300006796\|Ga0066665_11324287	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300006797\|Ga0066659_10054853	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	2535	Open in IMG/M
3300009101\|Ga0105247_11518441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300009148\|Ga0105243_11715191	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	657	Open in IMG/M
3300009156\|Ga0111538_12086950	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M
3300010046\|Ga0126384_10327722	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300010320\|Ga0134109_10502194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300010322\|Ga0134084_10087907	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300010329\|Ga0134111_10467711	Not Available	549	Open in IMG/M
3300010359\|Ga0126376_12346064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M
3300010361\|Ga0126378_10944976	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300010361\|Ga0126378_12476966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300010376\|Ga0126381_101200684	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300010376\|Ga0126381_101853677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	870	Open in IMG/M
3300010396\|Ga0134126_12921883	Not Available	517	Open in IMG/M
3300010398\|Ga0126383_10620422	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300010403\|Ga0134123_10069177	All Organisms → cellular organisms → Bacteria	2714	Open in IMG/M
3300010868\|Ga0124844_1207238	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	715	Open in IMG/M
3300011107\|Ga0151490_1521260	Not Available	763	Open in IMG/M
3300011269\|Ga0137392_11638464	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300012202\|Ga0137363_10498812	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300012202\|Ga0137363_10608997	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	922	Open in IMG/M
3300012202\|Ga0137363_11246138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	631	Open in IMG/M
3300012350\|Ga0137372_10609389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	800	Open in IMG/M
3300012354\|Ga0137366_10114513	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2039	Open in IMG/M
3300012356\|Ga0137371_11362773	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300012469\|Ga0150984_120987227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	711	Open in IMG/M
3300012685\|Ga0137397_11328680	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300012908\|Ga0157286_10338085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300012930\|Ga0137407_12057768	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012930\|Ga0137407_12324322	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300012948\|Ga0126375_10737171	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	772	Open in IMG/M
3300012971\|Ga0126369_12381172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	616	Open in IMG/M
3300012971\|Ga0126369_13568396	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300012972\|Ga0134077_10146613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	940	Open in IMG/M
3300012985\|Ga0164308_10413442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1107	Open in IMG/M
3300012985\|Ga0164308_11902137	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300013096\|Ga0157307_1121667	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300013306\|Ga0163162_11631785	Not Available	736	Open in IMG/M
3300015371\|Ga0132258_12030959	All Organisms → cellular organisms → Bacteria	1446	Open in IMG/M
3300015372\|Ga0132256_100404544	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300015374\|Ga0132255_100722621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1480	Open in IMG/M
3300016270\|Ga0182036_10832836	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	753	Open in IMG/M
3300016270\|Ga0182036_11035371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	678	Open in IMG/M
3300016319\|Ga0182033_11333240	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300016371\|Ga0182034_10857250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	780	Open in IMG/M
3300016445\|Ga0182038_10094056	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2157	Open in IMG/M
3300018032\|Ga0187788_10519888	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300018075\|Ga0184632_10144333	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300018433\|Ga0066667_10206037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1450	Open in IMG/M
3300018482\|Ga0066669_11367316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	641	Open in IMG/M
3300019356\|Ga0173481_10546787	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	599	Open in IMG/M
3300019362\|Ga0173479_10543031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300019870\|Ga0193746_1002362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1618	Open in IMG/M
3300019877\|Ga0193722_1001055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6416	Open in IMG/M
3300019886\|Ga0193727_1003830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6189	Open in IMG/M
3300020018\|Ga0193721_1157441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300021086\|Ga0179596_10333120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	760	Open in IMG/M
3300021168\|Ga0210406_10923575	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	655	Open in IMG/M
3300021560\|Ga0126371_13012774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300022195\|Ga0222625_1100936	Not Available	556	Open in IMG/M
3300023057\|Ga0247797_1065965	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300023058\|Ga0193714_1000039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	15142	Open in IMG/M
3300023069\|Ga0247751_1035334	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	816	Open in IMG/M
3300024286\|Ga0247687_1069790	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300024317\|Ga0247660_1084074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300025711\|Ga0207696_1149403	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	624	Open in IMG/M
3300025910\|Ga0207684_10253989	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300025912\|Ga0207707_10835524	Not Available	765	Open in IMG/M
3300025915\|Ga0207693_10364996	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300025926\|Ga0207659_10281587	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300025931\|Ga0207644_11552589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	555	Open in IMG/M
3300025960\|Ga0207651_10732188	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	873	Open in IMG/M
3300026304\|Ga0209240_1247691	Not Available	544	Open in IMG/M
3300026322\|Ga0209687_1151830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	745	Open in IMG/M
3300026523\|Ga0209808_1125267	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300026952\|Ga0207434_1019518	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300028587\|Ga0247828_10713202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	626	Open in IMG/M
3300028720\|Ga0307317_10229119	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300028793\|Ga0307299_10367721	Not Available	539	Open in IMG/M
3300031199\|Ga0307495_10229373	Not Available	524	Open in IMG/M
3300031573\|Ga0310915_10181078	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300031680\|Ga0318574_10795820	Not Available	554	Open in IMG/M
3300031716\|Ga0310813_10003528	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	9515	Open in IMG/M
3300031716\|Ga0310813_11455955	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	637	Open in IMG/M
3300031724\|Ga0318500_10721690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	509	Open in IMG/M
3300031744\|Ga0306918_10983017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	656	Open in IMG/M
3300031833\|Ga0310917_10162825	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300031879\|Ga0306919_11375790	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300031890\|Ga0306925_10433477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1406	Open in IMG/M
3300031912\|Ga0306921_12113629	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300031938\|Ga0308175_101488688	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	756	Open in IMG/M
3300031941\|Ga0310912_10146227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1781	Open in IMG/M
3300031941\|Ga0310912_10216228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1468	Open in IMG/M
3300031942\|Ga0310916_10799117	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	795	Open in IMG/M
3300031944\|Ga0310884_10514756	Not Available	704	Open in IMG/M
3300031946\|Ga0310910_10038684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3298	Open in IMG/M
3300032261\|Ga0306920_100361184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2160	Open in IMG/M
3300033412\|Ga0310810_10351887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1549	Open in IMG/M
3300033475\|Ga0310811_11480905	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.24%
Host-Associated	Host-Associated	11.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.76%
Plants	Host-Associated → Plants	11.76%
Aquatic	Environmental → Aquatic	1.47%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.68%
Freshwater	Environmental → Aquatic → Freshwater	0.74%
Sediment	Environmental → Aquatic → Sediment	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.26%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.47%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.21%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.21%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.47%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.47%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019870	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m1	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300024317	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01	Environmental	Open in IMG/M
3300025711	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026952	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_03179170	2065487018	Soil	GLITPAAVTATRRDYSWLLACLLEPFFDTKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVF
E41_09830930	2170459005	Grass Soil	LSHYLTPKIDLDLYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDL
F62_10128700	2170459010	Grass Soil	LSHYLTPKFDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSD
AP72_2010_repI_A10DRAFT_10169022	3300000651	Forest Soil	LAPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVF*
KanNP_Total_F14TBDRAFT_10245822	3300000709	Soil	RAFSPVCLSHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE*
F14TB_1002684443	3300001431	Soil	MFXXXXXXXKIDLDFYCFLKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDRRKQLPGCVF*
C688J18823_100096512	3300001686	Soil	MPKFGLDLYCFLKRSILQVTAKWETEARKLVDCQLSLFNGDLKSERRKQLPGCVF*
Ga0063454_1001829041	3300004081	Soil	LSHYLTAKIDRDFYCFLKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDK
Ga0062593_1031458462	3300004114	Soil	MPKFGLDLYCFLKRSILQVSAKWEMEARKLVDCQLSLFNGDLKS
Ga0066674_100890401	3300005166	Soil	LSHYLTRKIDLDFYCILKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDKRKQL
Ga0066684_102657474	3300005179	Soil	KIDRDFYCFLKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDKRKQLPGCVF*
Ga0066685_103395101	3300005180	Soil	LSHYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0066678_106391781	3300005181	Soil	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRK
Ga0066675_102934721	3300005187	Soil	LSHYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKS
Ga0065707_107863251	3300005295	Switchgrass Rhizosphere	LSHYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGD
Ga0066388_1013660181	3300005332	Tropical Forest Soil	LRHFLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCV
Ga0066388_1022488634	3300005332	Tropical Forest Soil	LDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSD*
Ga0066388_1035845022	3300005332	Tropical Forest Soil	LSHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLK
Ga0070677_104040563	3300005333	Miscanthus Rhizosphere	PKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDNRKQLPGCVFLE*
Ga0070671_1011462051	3300005355	Switchgrass Rhizosphere	LSHFLTPKIDLDFYCFLKRSTLQVTAKRETEARKLVDCQLSLFNGDLKSDKRK
Ga0066689_108850821	3300005447	Soil	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCV
Ga0066697_100207241	3300005540	Soil	LSHYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCV
Ga0070686_1011283731	3300005544	Switchgrass Rhizosphere	KIDLDLYCFLKRSTLQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE*
Ga0066702_101083151	3300005575	Soil	KIDLDFYCILKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDKRKQLPGCVF*
Ga0068861_1002385961	3300005719	Switchgrass Rhizosphere	DLYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE*
Ga0066903_1011986682	3300005764	Tropical Forest Soil	LTHYLTPKIDLDFYCFLKRSILQVTAKERETEARKLVDCQLSLFNG
Ga0068858_1010776301	3300005842	Switchgrass Rhizosphere	LSHFLTPKIDLDFYCFLKRSTLQVTAKRETEARKLVDCQLSLFNGDLKS
Ga0066651_100299961	3300006031	Soil	LSHYLTAKIDRDFYCFLKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDKRKQLPGCV
Ga0066656_108257182	3300006034	Soil	MPKFDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRK
Ga0070712_1002978471	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LSHYLTPKIDLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQL
Ga0070712_1017054331	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGD
Ga0074055_113212841	3300006573	Soil	IRAISPLGLSHYLTPKIDLDLYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDLKSDRRKQLPGCVF*
Ga0074053_115453051	3300006575	Soil	KIDLDLYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE*
Ga0074047_102627421	3300006576	Soil	IWPLGLSHYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF*
Ga0066653_101298512	3300006791	Soil	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQ
Ga0066665_113242872	3300006796	Soil	LSHYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQ
Ga0066659_100548531	3300006797	Soil	LSHYLTRKIDLDFYCILKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDKRKQLPG
Ga0105247_115184411	3300009101	Switchgrass Rhizosphere	MTLKRKIDRDFYCLLKRSTLVVRRTGKTEAWELVDCQLSLFSGDLKSDKREQ*
Ga0105243_117151912	3300009148	Miscanthus Rhizosphere	FLACLLQPLFGTKIDLDFYCFLKRSILQVTARRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVF*
Ga0111538_120869501	3300009156	Populus Rhizosphere	LDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE*
Ga0126384_103277221	3300010046	Tropical Forest Soil	LAPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQ
Ga0134109_105021942	3300010320	Grasslands Soil	LSHYLTAKIDRDFYCFLKRSILQVTAKRETKARKLVDCQLSLFNGDLKS
Ga0134084_100879071	3300010322	Grasslands Soil	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPG
Ga0134111_104677112	3300010329	Grasslands Soil	AFSPVCLSHYLTAKIDRDFYCFLKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDRRKQLPGCVF*
Ga0126376_123460641	3300010359	Tropical Forest Soil	LSHYLTPKIDLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGV
Ga0126378_109449761	3300010361	Tropical Forest Soil	MPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGD
Ga0126378_124769661	3300010361	Tropical Forest Soil	LSHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGD
Ga0126381_1012006841	3300010376	Tropical Forest Soil	LSSTKIDLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGDLKSDK
Ga0126381_1018536772	3300010376	Tropical Forest Soil	LSHYLTPKIDLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPG
Ga0134126_129218831	3300010396	Terrestrial Soil	IDLDLYCFLKRSTLQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE*
Ga0126383_106204222	3300010398	Tropical Forest Soil	MSHCRAPKIDLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGDLKSD
Ga0134123_100691771	3300010403	Terrestrial Soil	LSHYLTPKIDLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGD
Ga0124844_12072381	3300010868	Tropical Forest Soil	TPKIDLDFYCFLKRSILQVTAKRGTEARKLVDCQLSLFSGDLKSD*
Ga0151490_15212603	3300011107	Soil	LSHYLTPKIDLDLYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVFLE*
Ga0137392_116384641	3300011269	Vadose Zone Soil	AFSPVGLSHYLTRKIDLDFYCFLKRSILQVTATRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF*
Ga0137363_104988122	3300012202	Vadose Zone Soil	LTLDLYFFLKRSILQMTAKRETEARKLVDCQLSLFNGDLKS
Ga0137363_106089972	3300012202	Vadose Zone Soil	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDL
Ga0137363_112461382	3300012202	Vadose Zone Soil	LSHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDL
Ga0137372_106093891	3300012350	Vadose Zone Soil	LSHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCV
Ga0137366_101145133	3300012354	Vadose Zone Soil	MPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGSVF*
Ga0137371_113627732	3300012356	Vadose Zone Soil	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSD
Ga0150984_1209872271	3300012469	Avena Fatua Rhizosphere	VSHYLMPKFGLDLYCFLKRSILQVSAKWETEARKLVDCQLSLFNGDLKSERRKQL
Ga0137397_113286802	3300012685	Vadose Zone Soil	DLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF*
Ga0157286_103380851	3300012908	Soil	MPKFGLDLYCFLKRSILQVSAKWEMEARKLVDCQLSLFN
Ga0137407_120577681	3300012930	Vadose Zone Soil	LDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGSVFLE*
Ga0137407_123243221	3300012930	Vadose Zone Soil	LDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDRRKQLPGCVFLE*
Ga0126375_107371711	3300012948	Tropical Forest Soil	LAPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGD
Ga0126369_123811722	3300012971	Tropical Forest Soil	LTFDFYCFLKRSILQVTAKERETEARKLVDCQLSLFNGDLKSD
Ga0126369_135683961	3300012971	Tropical Forest Soil	MVLSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGC
Ga0134077_101466134	3300012972	Grasslands Soil	PPSAIFEHQKLTLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFSDDLKSDKREQ*
Ga0164308_104134421	3300012985	Soil	LDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDNRKQLPGRVFLE*
Ga0164308_119021371	3300012985	Soil	LSHFLTPKIDLDFYCFLKRSILQMTAKRETEARKLVDCQLSL
Ga0157307_11216671	3300013096	Soil	LSHYLTPKFDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQ
Ga0163162_116317851	3300013306	Switchgrass Rhizosphere	IDLDFYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF*
Ga0132258_120309591	3300015371	Arabidopsis Rhizosphere	LAPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQ
Ga0132256_1004045441	3300015372	Arabidopsis Rhizosphere	LSHFLTPKIDFDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSD
Ga0132255_1007226215	3300015374	Arabidopsis Rhizosphere	DFYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF*
Ga0182036_108328361	3300016270	Soil	MFLSHYLTRKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGC
Ga0182036_110353711	3300016270	Soil	LSHHLSSKIDLDFYCFLKRSILKVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLP
Ga0182033_113332401	3300016319	Soil	LTLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPG
Ga0182034_108572501	3300016371	Soil	LAPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDL
Ga0182038_100940561	3300016445	Soil	LAPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSD
Ga0187788_105198882	3300018032	Tropical Peatland	AFSPVCVSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0184632_101443331	3300018075	Groundwater Sediment	LSHYLTPKIDLDFYCFLKRSILQVSAKRETKARKLVDCQLSLFNGDLKSDK
Ga0066667_102060373	3300018433	Grasslands Soil	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDK
Ga0066669_113673162	3300018482	Grasslands Soil	LSHYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSD
Ga0173481_105467871	3300019356	Soil	LAPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPG
Ga0173479_105430312	3300019362	Soil	LSHYLTLKIDLDLYCFLKRSTLQVTAKRETEARKLVDCQLSLFNGDLKSD
Ga0193746_10023621	3300019870	Soil	LSHFLTPKIDLDFYCFLKRSILQMTAKPETEARKLVDCQLSLFNGD
Ga0193722_10010559	3300019877	Soil	MPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGAFF
Ga0193727_10038302	3300019886	Soil	LSHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVFLE
Ga0193721_11574411	3300020018	Soil	MPKIDLDLYCFLKRSILQVTAKPETEARKLVDCQLSLFNGDLKSDRRKQLPGC
Ga0179596_103331201	3300021086	Vadose Zone Soil	QKLTLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0210406_109235751	3300021168	Soil	LSHYLTPKFDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDK
Ga0126371_130127742	3300021560	Tropical Forest Soil	MPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSD
Ga0222625_11009361	3300022195	Groundwater Sediment	HYLTPKIDLDLYCFLKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0247797_10659652	3300023057	Soil	RHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0193714_100003919	3300023058	Soil	MPKIDLDLYCFLKRSILQVTAKPETEARKLVDCQLSLFNGDLKSDRRKQLPGCVFLE
Ga0247751_10353341	3300023069	Soil	LPPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGSVFLE
Ga0247687_10697902	3300024286	Soil	LWFLACLLEPFLTPKIDFDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0247660_10840742	3300024317	Soil	DLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0207696_11494032	3300025711	Switchgrass Rhizosphere	DLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0207684_102539893	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LSHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLK
Ga0207707_108355241	3300025912	Corn Rhizosphere	LTPKIDLDLYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDLKSDRRKQLPGCVF
Ga0207693_103649961	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LSHYLTPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRK
Ga0207646_103556675	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	IHAFSPVCLGHYLTRKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0207659_102815871	3300025926	Miscanthus Rhizosphere	LSHYLTLKIDLDLYCFLKRSTLQVTAKRETEARKLVDCQLSLFNGDLKS
Ga0207644_115525891	3300025931	Switchgrass Rhizosphere	PKIDLDFYCFLKRSTLQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0207651_107321881	3300025960	Switchgrass Rhizosphere	LSHYLTLKIDLDLYCFLKRSTLQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQ
Ga0209240_12476911	3300026304	Grasslands Soil	CLSHYLTPKFDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0209687_11518301	3300026322	Soil	ALSPVCLSHYLTRKIDLDFYCILKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0209808_11252671	3300026523	Soil	LSHYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQL
Ga0207434_10195182	3300026952	Soil	PPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDNRKQLPGRVFLE
Ga0247828_107132021	3300028587	Soil	HYLTPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0307317_102291192	3300028720	Soil	QKLTLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0307299_103677212	3300028793	Soil	IDLDLYCFLKRSILQVTAKPETEARKLVDCQLSLFNGDLKSDRRKQLPGCVFLE
Ga0307495_102293732	3300031199	Soil	GLSHYLTPKIDLDLYCFLKRSILQVTAIRETEARKLVDCQLSLFNGDLKSDRRKQLPGCV
Ga0310915_101810781	3300031573	Soil	LSHHLSSKIDLDFYCFLKRSILKVTAKRETEARKLVDCQLSLFNGDLKSDKR
Ga0318574_107958202	3300031680	Soil	SRCLACLVEPFLAPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0310813_1000352813	3300031716	Soil	MPKFGLDLYCFLKRSILQVSAKWEMEARKLVDCQLSLFNGDLKSERRKQLPGCVF
Ga0310813_114559551	3300031716	Soil	LSHYVPPKFDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSD
Ga0318500_107216902	3300031724	Soil	IICAFWPVCFSHYLAPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVF
Ga0306918_109830171	3300031744	Soil	LSHFLTPKFDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDL
Ga0310917_101628251	3300031833	Soil	LSHHLSSKIDLDFYCFLKRSILKVTAKRETEARKLVDCQLSLFNGDLK
Ga0306919_113757902	3300031879	Soil	MFLSHYLTRKIDLDLYCFLKRSILQVTAKRETEARKLVDCQL
Ga0306925_104334775	3300031890	Soil	RGKIDLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0306921_121136291	3300031912	Soil	LTLDFYCFLKGSILQVTAKRETEARKLVDCQLSLFNGDLKS
Ga0308175_1014886881	3300031938	Soil	LKHYLTPKIDLDFYCFLKRSILQVTAKRETKARKLVDCQLSLFNGDLKSDKRKQLPGCVF
Ga0310912_101462271	3300031941	Soil	LSHHLLSKIDLDFYCFLKRSILKVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPG
Ga0310912_102162281	3300031941	Soil	LSNAKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVF
Ga0310916_107991171	3300031942	Soil	DLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVF
Ga0310884_105147563	3300031944	Soil	IDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGVF
Ga0310910_100386841	3300031946	Soil	LAPKIDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGGV
Ga0306920_1003611841	3300032261	Soil	LSHFLTPKFDLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVFLE
Ga0310810_103518871	3300033412	Soil	CLSHYLTPKFDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDRRKQLPGCVFLE
Ga0310811_114809051	3300033475	Soil	DLDFYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDKRKQLPGCVF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057570

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences