Metagenome / Metatranscriptome Family F056977

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056977
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	42 residues
Representative Sequence	VLAFGALEWTFLAILVALVGAAGVFALFLVIQLFRNPSRR
Number of Associated Samples	74
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.17 %
% of genes near scaffold ends (potentially truncated)	20.44 %
% of genes from short scaffolds (< 2000 bps)	72.99 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (29.927 % of family members)
Environment Ontology (ENVO)	Unclassified (37.226 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.015 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.12% β-sheet: 0.00% Coil/Unstructured: 55.88%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF01553	Acyltransferase	40.88
PF12146	Hydrolase_4	16.79
PF12697	Abhydrolase_6	15.33
PF03330	DPBB_1	4.38
PF13189	Cytidylate_kin2	3.65
PF02782	FGGY_C	2.92
PF00365	PFK	2.19
PF00696	AA_kinase	1.46
PF12695	Abhydrolase_5	1.46
PF00072	Response_reg	1.46
PF08241	Methyltransf_11	0.73
PF06737	Transglycosylas	0.73
PF00370	FGGY_N	0.73
PF05977	MFS_3	0.73
PF00005	ABC_tran	0.73
PF16701	Ad_Cy_reg	0.73
PF03372	Exo_endo_phos	0.73
PF12704	MacB_PCD	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	2.19
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.32 %
Unclassified	root	N/A	11.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.32 %
Unclassified	root	N/A	11.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.32 %
Unclassified	root	N/A	11.68 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	70.07 %
Unclassified	root	N/A	11.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.65 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	70.07 %
Unclassified	root	N/A	11.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.65 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	52.55 %
Unclassified	root	N/A	11.68 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	3.65 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	21.90 %
Unclassified	root	N/A	11.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	8.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.65 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.92 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.73 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.90 %
Unclassified	root	N/A	11.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	8.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.65 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.92 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.73 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.73 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.90 %
Unclassified	root	N/A	11.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	8.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.65 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.92 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.73 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000887\|AL16A1W_10034570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5887	Open in IMG/M
3300000956\|JGI10216J12902_107256256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	879	Open in IMG/M
3300000956\|JGI10216J12902_107971402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1178	Open in IMG/M
3300000956\|JGI10216J12902_119142161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300001431\|F14TB_101079829	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300004157\|Ga0062590_101781579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	630	Open in IMG/M
3300005167\|Ga0066672_10586707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300005174\|Ga0066680_10260094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1104	Open in IMG/M
3300005174\|Ga0066680_10531678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	739	Open in IMG/M
3300005180\|Ga0066685_10251086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1220	Open in IMG/M
3300005180\|Ga0066685_10281863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1149	Open in IMG/M
3300005180\|Ga0066685_10632833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	736	Open in IMG/M
3300005181\|Ga0066678_10521041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	790	Open in IMG/M
3300005445\|Ga0070708_100032339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4537	Open in IMG/M
3300005445\|Ga0070708_100385169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1322	Open in IMG/M
3300005447\|Ga0066689_10596311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	697	Open in IMG/M
3300005468\|Ga0070707_100680090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	992	Open in IMG/M
3300005536\|Ga0070697_100863211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	802	Open in IMG/M
3300005540\|Ga0066697_10247912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1055	Open in IMG/M
3300005540\|Ga0066697_10505396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	685	Open in IMG/M
3300005553\|Ga0066695_10831159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	531	Open in IMG/M
3300005559\|Ga0066700_10636799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	740	Open in IMG/M
3300005561\|Ga0066699_11162923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300005598\|Ga0066706_10148571	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300005764\|Ga0066903_102146241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1076	Open in IMG/M
3300005764\|Ga0066903_108452759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	525	Open in IMG/M
3300006904\|Ga0075424_100495738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1304	Open in IMG/M
3300006914\|Ga0075436_101204053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	572	Open in IMG/M
3300007004\|Ga0079218_13872496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300007076\|Ga0075435_101192416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	666	Open in IMG/M
3300007076\|Ga0075435_101296311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	638	Open in IMG/M
3300009012\|Ga0066710_100043142	All Organisms → cellular organisms → Bacteria	5471	Open in IMG/M
3300009012\|Ga0066710_101378067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1093	Open in IMG/M
3300009012\|Ga0066710_101519615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1032	Open in IMG/M
3300009012\|Ga0066710_101722655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	952	Open in IMG/M
3300009012\|Ga0066710_101920360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	885	Open in IMG/M
3300009012\|Ga0066710_102247069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	795	Open in IMG/M
3300009012\|Ga0066710_102369280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	770	Open in IMG/M
3300009012\|Ga0066710_103032222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	653	Open in IMG/M
3300009012\|Ga0066710_103299950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300009012\|Ga0066710_104585106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300009088\|Ga0099830_10069036	All Organisms → cellular organisms → Bacteria	2557	Open in IMG/M
3300009088\|Ga0099830_11561513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300009090\|Ga0099827_10353892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1250	Open in IMG/M
3300009090\|Ga0099827_10833588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	798	Open in IMG/M
3300009090\|Ga0099827_11639163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	560	Open in IMG/M
3300009090\|Ga0099827_11680871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	553	Open in IMG/M
3300009137\|Ga0066709_100010875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8319	Open in IMG/M
3300009137\|Ga0066709_100361884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1998	Open in IMG/M
3300009137\|Ga0066709_100496133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1718	Open in IMG/M
3300009137\|Ga0066709_100612147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1553	Open in IMG/M
3300009137\|Ga0066709_101407130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1014	Open in IMG/M
3300009137\|Ga0066709_101797849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	860	Open in IMG/M
3300009137\|Ga0066709_104128477	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300009147\|Ga0114129_10094944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4130	Open in IMG/M
3300011003\|Ga0138514_100081056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300012096\|Ga0137389_10469233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1079	Open in IMG/M
3300012096\|Ga0137389_11669361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300012204\|Ga0137374_10005912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	14565	Open in IMG/M
3300012204\|Ga0137374_10007820	All Organisms → cellular organisms → Bacteria	12697	Open in IMG/M
3300012204\|Ga0137374_10157486	All Organisms → cellular organisms → Bacteria	2018	Open in IMG/M
3300012204\|Ga0137374_10289672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1350	Open in IMG/M
3300012204\|Ga0137374_10708004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	755	Open in IMG/M
3300012204\|Ga0137374_10898598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	651	Open in IMG/M
3300012204\|Ga0137374_11227998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300012206\|Ga0137380_10073657	All Organisms → cellular organisms → Bacteria	3124	Open in IMG/M
3300012206\|Ga0137380_11375412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300012209\|Ga0137379_10163955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2134	Open in IMG/M
3300012209\|Ga0137379_10752727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	879	Open in IMG/M
3300012210\|Ga0137378_11292865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	645	Open in IMG/M
3300012349\|Ga0137387_10007605	All Organisms → cellular organisms → Bacteria	6183	Open in IMG/M
3300012350\|Ga0137372_10072401	All Organisms → cellular organisms → Bacteria	2962	Open in IMG/M
3300012350\|Ga0137372_10845219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	654	Open in IMG/M
3300012354\|Ga0137366_10038699	All Organisms → cellular organisms → Bacteria	3694	Open in IMG/M
3300012354\|Ga0137366_10989177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300012355\|Ga0137369_10007979	All Organisms → cellular organisms → Bacteria	10590	Open in IMG/M
3300012355\|Ga0137369_10009617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9570	Open in IMG/M
3300012355\|Ga0137369_10071143	All Organisms → cellular organisms → Bacteria	2945	Open in IMG/M
3300012356\|Ga0137371_10540373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	898	Open in IMG/M
3300012356\|Ga0137371_10574261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	867	Open in IMG/M
3300012358\|Ga0137368_10560461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300012358\|Ga0137368_10610415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300012532\|Ga0137373_10062653	All Organisms → cellular organisms → Bacteria	3398	Open in IMG/M
3300012532\|Ga0137373_11196064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300012957\|Ga0164303_10691616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	686	Open in IMG/M
3300013772\|Ga0120158_10264674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	852	Open in IMG/M
3300014056\|Ga0120125_1155395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300014823\|Ga0120170_1030693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1369	Open in IMG/M
3300015358\|Ga0134089_10552622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300017997\|Ga0184610_1089225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	966	Open in IMG/M
3300018027\|Ga0184605_10367860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	648	Open in IMG/M
3300018027\|Ga0184605_10400669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	613	Open in IMG/M
3300018028\|Ga0184608_10464215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	544	Open in IMG/M
3300018431\|Ga0066655_10846017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	623	Open in IMG/M
3300018433\|Ga0066667_11361218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	622	Open in IMG/M
3300018433\|Ga0066667_11784142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300018468\|Ga0066662_11751959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300018482\|Ga0066669_10429568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1128	Open in IMG/M
3300018482\|Ga0066669_12005098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	542	Open in IMG/M
3300021344\|Ga0193719_10436739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	534	Open in IMG/M
3300025922\|Ga0207646_10435969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1182	Open in IMG/M
3300026296\|Ga0209235_1203274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300026552\|Ga0209577_10137107	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300027862\|Ga0209701_10208243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1163	Open in IMG/M
3300027875\|Ga0209283_10229353	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300027882\|Ga0209590_10130125	All Organisms → cellular organisms → Bacteria	1540	Open in IMG/M
3300027882\|Ga0209590_10300507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1030	Open in IMG/M
3300027882\|Ga0209590_10940511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300028791\|Ga0307290_10182201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300028796\|Ga0307287_10414579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	507	Open in IMG/M
3300028814\|Ga0307302_10302201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	787	Open in IMG/M
3300028824\|Ga0307310_10478034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300028828\|Ga0307312_10718496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300028828\|Ga0307312_11102938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300028878\|Ga0307278_10004349	All Organisms → cellular organisms → Bacteria	6834	Open in IMG/M
3300028881\|Ga0307277_10402707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	612	Open in IMG/M
3300028884\|Ga0307308_10614511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	521	Open in IMG/M
3300030006\|Ga0299907_10035474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3898	Open in IMG/M
3300030336\|Ga0247826_11109443	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300031421\|Ga0308194_10246223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300034172\|Ga0334913_012319	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.35%
Host-Associated	Host-Associated	3.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.43%
Plants	Host-Associated → Plants	3.65%
Aquatic	Environmental → Aquatic	2.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.65%
Sediment	Environmental → Aquatic → Sediment	2.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.40%
Loam	Environmental → Terrestrial → Soil → Loam	7.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	38.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.46%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.73%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	29.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	21.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.49%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.11%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.73%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.73%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL16A1W_100345702	3300000887	Permafrost	MIAFGALQWSFLAALVVLVGAAGVFALFLVLQLFRNPSRR*
JGI10216J12902_1072562561	3300000956	Soil	MLAYGVLEWTFLTVLVLLVGAAGLFAVFLVVQLFRDHGG
JGI10216J12902_1079714022	3300000956	Soil	MLAFGILEWTFLVALVILVGAAGLFALFIVAQLFRNPRRS*
JGI10216J12902_1191421612	3300000956	Soil	VLAFGPLEWTFTIVLIVLVLAAGLFALFILLQLIRP
F14TB_1010798292	3300001431	Soil	MVGFGPLEWTFVGILVTLVGATGLFALFLVVQLFRNPSRRR*
Ga0062590_1017815792	3300004157	Soil	MLGSFGALEWTFLIVLVVLVGAAGVFALYLLVQLFLGHSRRT*
Ga0066672_105294001	3300005167	Soil	VAYGALEWTFIGILAAMVTMAGLFAVFVVVQLFRNPSRKG*
Ga0066672_105867071	3300005167	Soil	GQAVIMLAFGPLEWTFTAVLIALVGAAGVFALFLIVQLFRAHSRRT*
Ga0066680_102600942	3300005174	Soil	MLAFGPLEWTFTAVLIALVGAAGVFALFLIVQLFRAHSRRT*
Ga0066680_105316782	3300005174	Soil	MLAFGALEWTFLAILVALVGAAGVFALYLVIQLFRNPTRNPSRR*
Ga0066679_101423032	3300005176	Soil	VAYGALEWTFIGILAAMVTMAGLFAVFVVLQLFRNPSRKG*
Ga0066690_103552722	3300005177	Soil	LVAYGALEWTFIGILAAMVTMAGLFAVFVVLQLFRNPSRKG*
Ga0066690_108817681	3300005177	Soil	LLAYGALEWTFIGILAVMVTAAGLFAVFVVVQLFRNPSRKE*
Ga0066685_102510861	3300005180	Soil	MLAFGVLEWSFLAALVALVGAAGIFGLYVLMQLFRNPRRKMRAR*
Ga0066685_102818632	3300005180	Soil	MLTFGPLEWTFTAILIALVGVAGLFALYLVIQLFRTHSRRT*
Ga0066685_106328331	3300005180	Soil	VLGFGALEWTFVGLLVGLVGLAGLFFLFLVVQLFRNPARHPGSGR*
Ga0066678_105210411	3300005181	Soil	MLTFGPLEWTFTAILIALVGVAGLFALYLVIQLFRTHSRRT
Ga0070708_1000323392	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLAFGPLEWTFTAILMALVAAAGLFALFLVMQLFRAHSRRT*
Ga0070708_1003020712	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVAYGALEWTFIGLLAVMVTAAALFAVFVVVQLFRNPSRRG*
Ga0070708_1003851692	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLAFGPLEWTFTIVLVLSVVAAALFFLFIVLQLFRAHSRR*
Ga0066689_105963112	3300005447	Soil	MLAFGPLEWTFTAILIALVGVAGLFALYLVIQLFRTHSRRT*
Ga0070707_1006800902	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLAFGVLEWTFLTLLVLLVGAAGVFALFLVLQLFRNPTSRPRTPR*
Ga0070697_1008632112	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLAFGVLEWTFLTLLVLLVGAAGVFALFLVLQLFRNPTSRPRAPR*
Ga0066697_102479121	3300005540	Soil	AFGVLEWTFLTLLVLLVGAAGVFGLFLVLQLFRNPTSRPRAPR*
Ga0066697_105053962	3300005540	Soil	MIAAFGVLEWTFLAILVLLTGSAGVFGLFLVAQLFRNPSRRRRTRAGTG*
Ga0066695_105317272	3300005553	Soil	VVAYGALEWTFVGILAAMVTAAGFFAVFVVLQLFRNPSRKG*
Ga0066695_108311592	3300005553	Soil	MLTFGPLEWTFTAVLIALVGVAGLFALYLVIQLFRTHSRRT*
Ga0066700_106367991	3300005559	Soil	KPLVMLAFGVLEWTFLTLLVLLEGAAGVFALFLVLQLFRNPTSRPRTPR*
Ga0066699_102204361	3300005561	Soil	MLAYHALEWTFIGILAAMVTAAGLFTLFVLIQLFRNPSRKG*
Ga0066699_111629231	3300005561	Soil	VLAAFGALEWSFLVALVVLVGAAGVFALFILMQLFRAHSRR*
Ga0066706_101485715	3300005598	Soil	VLAFGPLEWTFVVVLVALVGAAGVFALFLVAQLFRTHSRRA*
Ga0066903_1021462412	3300005764	Tropical Forest Soil	MLGFGVLEWTFLTLLVLLVGAAGVFALFLVLQLFRNPTARPRTPR*
Ga0066903_1084527592	3300005764	Tropical Forest Soil	MLAFGVLEWTFLTLLVLLVGGAGVFALFLVLQLFRNPTSRRGARR*
Ga0075424_1004957382	3300006904	Populus Rhizosphere	MLAFGVLEWTFLTLLVLLVGAAGVFGLFLVLQLFRNPTSRPRAQR*
Ga0075436_1012040531	3300006914	Populus Rhizosphere	VIAFGTLEWSFLIALVVLVGAAGVFFLFILMQLFRVHSRR*
Ga0079218_138724961	3300007004	Agricultural Soil	VVAFGILEWSFLAALIFLVGAVTLFAVFLLAQLFRIHSRK*
Ga0075435_1011924161	3300007076	Populus Rhizosphere	MLAFGPLEWTFTIVLVLLVGAAGLFFLFILLQLFRAHSRR*
Ga0075435_1012963111	3300007076	Populus Rhizosphere	MLGFGVLEWTFLTLLVLLVGAAGVFALFLVLQLFRNPTSRPRAPR*
Ga0066710_1000431426	3300009012	Grasslands Soil	MLAFGPLEWTFTAILIALVGVAGLFALYLVIQLFRTHSRRT
Ga0066710_1002579562	3300009012	Grasslands Soil	MLAYHTLEWTFIALLAAMVTAAGLFAVYVLIQLFRNPSRKG
Ga0066710_1006086181	3300009012	Grasslands Soil	VVAYGALEWTFVGILAAMVTAAGFFAVFVVLQLFRNPSRKG
Ga0066710_1013780672	3300009012	Grasslands Soil	VLAFGPLEWTFVVVLVALVGAAGVFALFLVAQLFRTHSRRA
Ga0066710_1015196152	3300009012	Grasslands Soil	MLAFGKLEWTFLSLLVLLVGAAGLFGLFLVLNLFRNPSRRRP
Ga0066710_1017226552	3300009012	Grasslands Soil	MLAFGILEWTFVAVLVLLVGAAGLFALFMVVQLFRNPRRS
Ga0066710_1019203602	3300009012	Grasslands Soil	MAAFGLLEWTFVGVLVALVGAAGMFALFLLLQLFRNPSRRH
Ga0066710_1022470692	3300009012	Grasslands Soil	AFGVLEWSFLAALVVLVGAAGIFGLYVLVQLFRNPRRG
Ga0066710_1023692802	3300009012	Grasslands Soil	MIAAFGVLEWTFLAILVLLTGSAGVFGLFLVAQLFRNPSRRRRTRAGTG
Ga0066710_1030322222	3300009012	Grasslands Soil	MLAFGRLEWMFVSVLILLVGAAGVFAAYLVLQLFRIPPRRS
Ga0066710_1032999501	3300009012	Grasslands Soil	GNPSMLGFGVLEWTFVAILVLLVGGAGVFALFLLVQLFRNPSRRG
Ga0066710_1045851061	3300009012	Grasslands Soil	GVLEWSFLAALVALVGAAGIFGLYVLMQLFRNPRRKMRAR
Ga0099830_100690363	3300009088	Vadose Zone Soil	VLAFGALEWTFLAILVALVGAAGVFALFLVIQLFRNPSRR*
Ga0099830_115615132	3300009088	Vadose Zone Soil	MLAFGRLEWTFVSVLILLVGAAGVFAAYLVLQLFRNPPRRS*
Ga0099827_103538922	3300009090	Vadose Zone Soil	VIAFGILEWTFLAVLVFLVGAAGLFALFLVVQLFRNPRRS*
Ga0099827_108335882	3300009090	Vadose Zone Soil	MLAFGALEWAFVAILVGLVGAAGVFALYLVIQLFRNPTRNPSRR*
Ga0099827_116391631	3300009090	Vadose Zone Soil	MLAFGPLEWTFTAILIALVGMAGLFALYLVIQLFRTHSRR
Ga0099827_116808712	3300009090	Vadose Zone Soil	MLAFGVLEWGFTIALVALVGAAGVFGLYVVAQLFRNPRRG*
Ga0066709_1000108754	3300009137	Grasslands Soil	MIAFGPLEWTFLAILVLLVGAAGLFAVFLLVQLFRTHSRRA*
Ga0066709_1001360775	3300009137	Grasslands Soil	MLAYHTLEWTFIALLAAMVTAAGLFAVYVLIQLFRNPSRKG*
Ga0066709_1003618842	3300009137	Grasslands Soil	MAAFGLLEWTFVGVLVALVGAAGLFALFLLLQLFRNPSRRH*
Ga0066709_1004961332	3300009137	Grasslands Soil	MLGFGALEWTFLAILVALVGAAGVFALFLVVQLFRNPTRNPSRR*
Ga0066709_1006121472	3300009137	Grasslands Soil	VLAYSALQWSFVVLLVVLVGAAGLFAVFLVAQLFRNPARR*
Ga0066709_1012481712	3300009137	Grasslands Soil	VVAYGALEWTFVVILAAMVTAAGFFAVFVVLQLFRNPSRRG*
Ga0066709_1014071302	3300009137	Grasslands Soil	VIAAFGILEWTFLVVLIVLVGAAGVFALFILMQLFRAHSRR*
Ga0066709_1017978491	3300009137	Grasslands Soil	MIAAFGVLEWTFLAILVLLTGSAGLFALYLVAQLFRNPSR
Ga0066709_1041284772	3300009137	Grasslands Soil	VIASFGLLEWTFLALLVLLVGAAGVFAIFLVVQLFQGHGRPRPSP*
Ga0114129_100949444	3300009147	Populus Rhizosphere	MLAFGPLEWTFTVILLVLVGAAGLFALFLIAQLFRGHSRRT*
Ga0138514_1000810562	3300011003	Soil	MLAFGILEWTFLAALVILVGAAGLFALFMVAQLFRNPRRS*
Ga0137389_104692332	3300012096	Vadose Zone Soil	MVAFGVLEWTFLTLLVLLVGAAGVFALFLVLQLFRNPTSRPRAPR*
Ga0137389_116693612	3300012096	Vadose Zone Soil	NPRGKGSAIVLAFGALEWTFLAILVALVGAAGVFALFLVIQLFRNPTRR*
Ga0137374_100059123	3300012204	Vadose Zone Soil	MLAFGMLEWTFVAVLVLLVGAAGLFALFMLAQLFRNPRRS*
Ga0137374_1000782010	3300012204	Vadose Zone Soil	MLAFGPLEWTFTAILIVLVGVAGLFALYLVIQLFRAHSRRT*
Ga0137374_101574863	3300012204	Vadose Zone Soil	LIAYGTLEIAFIVVLVALVGGAGLFALFMLVQLFRNHSRW*
Ga0137374_102896722	3300012204	Vadose Zone Soil	MLAFGILEWTFVAVLVLLVGAAGLFALFMVAQLFRNPRRS*
Ga0137374_107080042	3300012204	Vadose Zone Soil	GVLEWTFLAVLVLLVGAAALFALFMVAQLFRNPRRS*
Ga0137374_108985981	3300012204	Vadose Zone Soil	VLAFGPLEWTFTIVLIVLVGLAGLFALYLILQLFRGH
Ga0137374_112279982	3300012204	Vadose Zone Soil	MLAFGPLEWTFTAILIVLVAVAGLFALYLVIQLFRAHSRRT*
Ga0137380_100736572	3300012206	Vadose Zone Soil	MVGFGVLEWSFLGALVLLVGAVTAFLLFLLAQLFRIHSRR*
Ga0137380_108600692	3300012206	Vadose Zone Soil	VVAYGALEWTFVGILAAMVTAAGFFAVFVVLQLFWNPSR
Ga0137380_113754122	3300012206	Vadose Zone Soil	MVAFGPLEWTFVGILVALVGASGLFALFLLAQLFRNPSRRR*
Ga0137379_101639553	3300012209	Vadose Zone Soil	MLGFGVLEWTFVAILVLLVGGAGVFALFLLVQLFRNPSRRG*
Ga0137379_107527272	3300012209	Vadose Zone Soil	VPFAFGVLEWTFLVILVVLVGAAGVFGLFLVTQLFRTHSRR*
Ga0137378_112928652	3300012210	Vadose Zone Soil	MLAFGVLEWSFLAALVVLVGGAGLFGLYVLAQLFRNPRRG*
Ga0137387_100076053	3300012349	Vadose Zone Soil	MLAFGKLEWTFVALLVLLVGAAGVFGLFLVVQLFRNPSRRG*
Ga0137372_100724015	3300012350	Vadose Zone Soil	VEGEGASKMVAYGALEWSFLAALVILVGGAGVFALFLVLQLFRNPSRRR*
Ga0137372_108452191	3300012350	Vadose Zone Soil	MMAFGPLEWTFVGILVALVGAAGLFMLFLLVQLFRNPSRRH*
Ga0137366_100386994	3300012354	Vadose Zone Soil	MVAFGPLEWTFVGVLVALVAAAGLFALFLLLQLFRNPSRRH*
Ga0137366_109891771	3300012354	Vadose Zone Soil	VVVAFGTLEWTFVGILVALVGAAGMFALFLVVQLFRNPSRR
Ga0137369_100079794	3300012355	Vadose Zone Soil	MVAFGVLEWSFVGALAVLVGAAGIFALFLLAQLFRNPTRRAER*
Ga0137369_100096176	3300012355	Vadose Zone Soil	MLAFGMLEWTFVAVLVLLVGTAGLFALFMLAQLFRNPRRS*
Ga0137369_100711434	3300012355	Vadose Zone Soil	MVGSFGILEWTFLILLVTLVGAAGLFALFLLAQLFRDHARRGSFP*
Ga0137371_105403731	3300012356	Vadose Zone Soil	RTSVIAFGVLEWTFLAVLVLLVGTAGLFALFLVVQLFRNPRRS*
Ga0137371_105742612	3300012356	Vadose Zone Soil	MMAFGPLEWTFVGILVALVGAAGLFMLFLVVQLFRNPSRRH*
Ga0137368_105604612	3300012358	Vadose Zone Soil	VLAFGPLEWTFTIVLIVLIVLVGLAGLFALYLILQLFRGHSRR*
Ga0137368_106104151	3300012358	Vadose Zone Soil	MLALGILEWTFVAVLVLLVGAAGLFALFMVAQLFRNPRRS*
Ga0137373_100626531	3300012532	Vadose Zone Soil	MLAFGPLEWTFTAILIALVGVAGLFALYLVIQLFRAHSRRT*
Ga0137373_102260762	3300012532	Vadose Zone Soil	VVAYGALEWTFVGILAAMVTAAGFFAVFVVLQLFRNPPRKG*
Ga0137373_111960642	3300012532	Vadose Zone Soil	MLAFGILEWTFVAVLVLLVGAAGLFALFMLAQLFRNPRRS*
Ga0164303_106916161	3300012957	Soil	MLAFGVLEWTFLTLLVLLVGAAGVFALFLVLQLFRNPTSRPRAHR*
Ga0120158_102646741	3300013772	Permafrost	MIAFGALQWSFLAALVVLVGAAGVFALFLVLQLFRNPSRR
Ga0120125_11553951	3300014056	Permafrost	MIAFGALQWSFLAALVVLVGAAGVVALFLVLQLFRNPSRR*
Ga0120170_10306931	3300014823	Permafrost	WIFVALLVGLVGLAGVFGLFLVAQLFRDHGRRPRAHP*
Ga0134089_105526221	3300015358	Grasslands Soil	TDVLAAFGLLEWTFVVVLVVLVGAAGVFALFILMQLFRAHSRR*
Ga0184610_10892252	3300017997	Groundwater Sediment	MLAYGILEWTFVGVLALLVGATALFGLFVLAQLFRNPRRS
Ga0184605_103678602	3300018027	Groundwater Sediment	MLAFGILEWTFLAVLVLLVGAAGLFALFMLAQLFRNPRRS
Ga0184605_104006692	3300018027	Groundwater Sediment	MIAFGLLEWMFLVILVLLVGAAGLFGVFLLFQLFQTHSRRG
Ga0184608_104642152	3300018028	Groundwater Sediment	MLAFGILEWTFVVALVALVGAAGLFALFIVAQLFRNPRRS
Ga0066655_108460172	3300018431	Grasslands Soil	MLTFGPLEWTFTAVLIALVGVAGLFALYLVIQLFRTHSRRT
Ga0066667_102510772	3300018433	Grasslands Soil	VAYGALEWTFIGILAAMVTMAGLFAVFVVLQLFRNPSRKG
Ga0066667_113612181	3300018433	Grasslands Soil	VLAYGVLQWTFLGVLVLLVGAAGAFALFLVVQLFRDH
Ga0066667_117841421	3300018433	Grasslands Soil	PFMLAFGVLEWSFLAALVALVGAAGIFGLYVLMQLFRNPRRKMRAR
Ga0066662_117519592	3300018468	Grasslands Soil	MLAFGPLEWTFTAVLIALVGAAGVFALFLIVQLFRAHSRRT
Ga0066669_104295682	3300018482	Grasslands Soil	MLAFGVLEWTFLTLLVLLVGAAGVFALFLVLQLFRNPTSRPRAPR
Ga0066669_120050981	3300018482	Grasslands Soil	VLAYSALQWSFVVLLVVLVGAAGLFAVFLVAQLFRNPARR
Ga0193719_104367392	3300021344	Soil	VLAFGPLEWTFTAVLVLLVGAAGLFALFIVLQFFRSHSRR
Ga0207646_104359692	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLAFGVLEWTFLTLLVLLVGAAGVFAVFLVLQLFRNPTSRPRTPR
Ga0207646_106028702	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LVAYGALEWTFIGILAAMVTMAGLFAVFVVLQLFRNPSRKG
Ga0209235_12032742	3300026296	Grasslands Soil	SRHMLTFGPLEWTFTAILIALVGVAGLFALYLVIQLFRTHSRRT
Ga0209577_101371072	3300026552	Soil	MLAFGVLEWTFLTLLVLLVGAAGVFALFLVLQLFRNPTSRPRTPR
Ga0209701_102082432	3300027862	Vadose Zone Soil	VLAFGALEWTFLAILVALVGAAGVFALFLVIQLFRNPSRR
Ga0209283_102293531	3300027875	Vadose Zone Soil	LAFGKLEWTFLALLVLLVGAAGVFGLFLVVQLFRNPSRRG
Ga0209590_101301252	3300027882	Vadose Zone Soil	MLAFGRLEWTFVSVLILLVGAAGVFAAYLVLQLFRNPPRRS
Ga0209590_103005072	3300027882	Vadose Zone Soil	VIAFGILEWTFLAVLVFLVGAAGLFALFLVVQLFRNPRRS
Ga0209590_109405112	3300027882	Vadose Zone Soil	MLAFGALEWAFVAILVGLVGAAGVFALYLVIQLFRNPTRNPSRR
Ga0307290_101822012	3300028791	Soil	MLAFGILEWTFVVALVVLVGAAGLFALFIVAQLFRNPRRS
Ga0307287_104145792	3300028796	Soil	MMAFGILEWTFVGVLVLLVGAAGLFALFMLAQLFRNPRRPWNAR
Ga0307302_103022012	3300028814	Soil	MLAFGPLEWTFVVVLVVLVGAAGVFALFLLAQLFRTHSRRA
Ga0307310_104780342	3300028824	Soil	FGPLEWTFVIVLILLVGAAGLFGLFLVAQLFRAHSRRA
Ga0307312_107184962	3300028828	Soil	VLAFGVLEWTFTVVLVVLVGAAGLFGLYILLQLFRAHSRR
Ga0307312_111029381	3300028828	Soil	MLAFGALEWTFLAILVALVGAAGVFALYLVIQLFRNPTRNPSRR
Ga0307278_100043495	3300028878	Soil	MMAFGILEWTFVGVLVLLVGAAGVFALFMLAQLFRNPRRP
Ga0307277_104027072	3300028881	Soil	MLAFGILEWTFLVALVILVGAAGLFALFIVAQLFRNPRRS
Ga0307308_106145111	3300028884	Soil	MVAFGPLEWTFVGILVALVGAAGVFALFLLAQLFRNPS
Ga0299907_100354742	3300030006	Soil	VLGYGILEWTFLVILVLLVGAAGVFGLFMVVQLFRNPVRR
Ga0247826_111094432	3300030336	Soil	MVADFGALEWSFLIALVALVAAAGVFALFLVVQLFRNPIRRRG
Ga0308194_102462232	3300031421	Soil	EIALMLAFGILEWSFLIALVVLVGLAGVFALFLVVQLFRNPSRRV
Ga0307471_1021977422	3300032180	Hardwood Forest Soil	LVAYGALEWTFLGILAAMVTMAGLFAVFVVVQLFRNPSRKG
Ga0334913_012319_1663_1797	3300034172	Sub-Biocrust Soil	MLAFGLLEWTFLVILVLLVGAAGVFALFLLLQLFQTHSRRTERR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056977

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences