NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F056796

Metagenome / Metatranscriptome Family F056796

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F056796
Family Type Metagenome / Metatranscriptome
Number of Sequences 137
Average Sequence Length 47 residues
Representative Sequence MKIDLAAAARVVPLTALMLGACVSQSAYEKQGQELQAARAQAAAEQS
Number of Associated Samples 95
Number of Associated Scaffolds 137

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 77.42 %
% of genes near scaffold ends (potentially truncated) 16.06 %
% of genes from short scaffolds (< 2000 bps) 18.98 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.292 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(51.095 % of family members)
Environment Ontology (ENVO) Unclassified
(59.854 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.474 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 56.00%    β-sheet: 0.00%    Coil/Unstructured: 44.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 137 Family Scaffolds
PF12833HTH_18 59.85
PF00691OmpA 11.68
PF00072Response_reg 3.65
PF00884Sulfatase 3.65
PF09865DUF2092 0.73
PF00535Glycos_transf_2 0.73
PF07045DUF1330 0.73
PF01914MarC 0.73
PF00512HisKA 0.73

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 137 Family Scaffolds
COG2095Small neutral amino acid transporter SnatA, MarC familyAmino acid transport and metabolism [E] 0.73
COG5470Uncharacterized conserved protein, DUF1330 familyFunction unknown [S] 0.73


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.29 %
All OrganismsrootAll Organisms19.71 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005764|Ga0066903_103015746All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria912Open in IMG/M
3300005764|Ga0066903_104851839All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium715Open in IMG/M
3300006176|Ga0070765_100118860All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2314Open in IMG/M
3300010048|Ga0126373_10170265All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2088Open in IMG/M
3300010361|Ga0126378_10337075All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1616Open in IMG/M
3300010376|Ga0126381_104894900All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria514Open in IMG/M
3300016270|Ga0182036_11288169Not Available609Open in IMG/M
3300016357|Ga0182032_10915204All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300016387|Ga0182040_10041903All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2783Open in IMG/M
3300016404|Ga0182037_11396643Not Available619Open in IMG/M
3300020579|Ga0210407_10937367All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae663Open in IMG/M
3300020580|Ga0210403_10478142All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1013Open in IMG/M
3300020580|Ga0210403_10543967All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium941Open in IMG/M
3300021404|Ga0210389_10220287All Organisms → cellular organisms → Bacteria1482Open in IMG/M
3300021407|Ga0210383_11045684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium691Open in IMG/M
3300028906|Ga0308309_10313617All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1329Open in IMG/M
3300031545|Ga0318541_10147531All Organisms → cellular organisms → Bacteria1289Open in IMG/M
3300031561|Ga0318528_10144165All Organisms → cellular organisms → Bacteria1267Open in IMG/M
3300031573|Ga0310915_10090396All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2052Open in IMG/M
3300031680|Ga0318574_10283829All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium961Open in IMG/M
3300031680|Ga0318574_10416925All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300031713|Ga0318496_10662296All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300031719|Ga0306917_10996087All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300031740|Ga0307468_101793790All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium581Open in IMG/M
3300031797|Ga0318550_10514043Not Available577Open in IMG/M
3300031821|Ga0318567_10825822All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300031890|Ga0306925_10106105All Organisms → cellular organisms → Bacteria2993Open in IMG/M
3300032025|Ga0318507_10284917All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300032043|Ga0318556_10388894All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300032052|Ga0318506_10085837Not Available1328Open in IMG/M
3300032091|Ga0318577_10449451All Organisms → cellular organisms → Bacteria615Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil51.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil20.44%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil11.68%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil5.11%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.46%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil1.46%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.73%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.73%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.73%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.73%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.73%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.73%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.73%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.73%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.73%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021372Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01EnvironmentalOpen in IMG/M
3300021384Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9Host-AssociatedOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021441Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1Host-AssociatedOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300026496Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-AEnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12630J15595_1009194313300001545Forest SoilMIINRAAVSRIVPLTALILGACVSQSTYDQLQAQYQQL
Ga0066398_1009917013300004268Tropical Forest SoilMGIDLTTAARVVPLTALTSGASVSRSTYDKQTAVLQQARA
Ga0066388_10127410513300005332Tropical Forest SoilMIINLAGAARLVPLTALTLGACVSQSAYEQQGQELQQARAQTAAE*
Ga0066388_10784775423300005332Tropical Forest SoilMKMNLASAARVVPLTALLLGACVSQSTYDKQTAELQQARAQA
Ga0008090_1557925213300005363Tropical Rainforest SoilMIIDLAAAARVVPLTALMLAACVSQSASEKRGQELQADRVQAASKQT
Ga0008090_1574297123300005363Tropical Rainforest SoilMITGLTAAARIVPFTALMLAACVSESKYEAQTQQLQAAQAQSAAEQAQIAK
Ga0066687_1075029413300005454SoilMKIDFATAARVVPLTTLLLGACVSQSAYEKQGAELQQARAQA
Ga0066654_1034082423300005587SoilMTINLAAAARIVPLTALMLGACVSQSAYDQVQAQNQQLQG
Ga0066903_10301574623300005764Tropical Forest SoilMIINLAAAARVVPLTALMLGACVSQSAYEKQGQELQQARAQAAAEQSQIAKMQ
Ga0066903_10322632913300005764Tropical Forest SoilMRIDLAAASRIVPLTALMLGACVPQSAYDKQAVELQQARAEISKMQQEQKW
Ga0066903_10485183923300005764Tropical Forest SoilMKVDLALAARIVPLTALMFGACVSQSAYEKQGAELQTARAQAVAEQSQLTRMQQE
Ga0070712_10097939313300006175Corn, Switchgrass And Miscanthus RhizosphereMKIDLTAAARIVPLTALILGACVSQSAYEKQEAELQQ
Ga0070765_10011886023300006176SoilMTITLTAAARIVPLTGLLLSACVSEKTYEAQTQQLQAARARAAAEQSQIAKMQAANT*
Ga0126384_1146401423300010046Tropical Forest SoilMKIDLAAAARVVPLTALMLGACVSQSAYEKQGQELQAARAQAAAEQS
Ga0126373_1017026513300010048Tropical Forest SoilMRIDLTAAARIVPLTALILGACVSQSAYEKQGAELPAARAQAAAEQSQVAKMQQEQKW
Ga0126373_1272644223300010048Tropical Forest SoilMTIDLVAAARIVPLTALILAACVSEKTYEQQTQQLQ
Ga0126378_1033707533300010361Tropical Forest SoilMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQISKMQKAQK*
Ga0126378_1060201223300010361Tropical Forest SoilMIVNLPGAARVVPPTALLLGACVSQSTYDKQTAELQQARA
Ga0126378_1144231713300010361Tropical Forest SoilMTINLAGAARVVPFTALLLGACVSQSAYEQQSQEL
Ga0126378_1248355913300010361Tropical Forest SoilMITGLTAAARIVPFTALMLAACVSESKYEAQTQQLQAAQAQSAAEQAQIA
Ga0126377_1161066713300010362Tropical Forest SoilMTINLAGAARVVPFTALLLAACVSQSAYEQQSQELEQAR
Ga0126379_1031947713300010366Tropical Forest SoilMKIDLAAAARIAPLTALILGACVSQSAYEQQGQQLQAARAQAAAEQ
Ga0126379_1184540113300010366Tropical Forest SoilMTINLAAVARVIPFTALMLAACVSQSAYEQQSQELAQARAQAAA
Ga0126381_10248270823300010376Tropical Forest SoilMTINLAGAARVIPLTALMLTACVSKSAYEQQGQELQAARAQASAEQ
Ga0126381_10425294423300010376Tropical Forest SoilMKIDLTAAARVVPFTALIFGACVSQSAYEKQGADLQAARTQATAEQSQL
Ga0126381_10489490023300010376Tropical Forest SoilMITSLTAAARIFPFTALMLAACVSESKYEAQTQQLQAAQAQSAAEQAQIAKM
Ga0126381_10495081623300010376Tropical Forest SoilMKIDLAAAARVIPLTALMLGACVSQSAYEQQGQQLQAARAQA
Ga0126383_1187533323300010398Tropical Forest SoilMTVNLAAAARVVPFTALLLGACVSQSAYEQQSQELEQARAEATAQQA
Ga0137360_1137914323300012361Vadose Zone SoilMIINLAAVARIVPLTALMLGACASQNAYDQLQAQNQQLQAQLA
Ga0182036_1122995423300016270SoilMTVNLEAARAIPLTALMLAACVSERAYEQQTRQLQSGAGPSKW
Ga0182036_1128816913300016270SoilMRIDLTAAARIIPHTALMLGACVSRSAYEKHGQEIHAARAQAAAKRSQISKMQK
Ga0182041_1033892213300016294SoilMRIDLTAAARVVPLTALLLGACVSQSTYDKQTAELQQ
Ga0182041_1084707913300016294SoilMIIDLTAAARLIPLTALMLGACVSQSAYEKQGQELQQA
Ga0182035_1039390323300016341SoilMKIDLAAAARVVPLTALMLGARVSQSAYEQQGQQLQAARAQAAAEQAQIAKM
Ga0182032_1041388513300016357SoilMITGPAARIVPFTALMLAACVSESKYEAQTQQLQAAQAQSAAEQAQI
Ga0182032_1054963823300016357SoilMIINLAAVAWVVPLTALLLAACVSEKTYEQRTRQLQ
Ga0182032_1091520423300016357SoilMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAAAKRSQISKMQKAQK
Ga0182040_1004190343300016387SoilMRIDLTAAARVVPLTALLLGACVSQSTYDKQTAELQQSRAQAAAEQSQIAKMQ
Ga0182040_1184671613300016387SoilMKIDLAAAARVVPLTALMLGACVSQSAYEQQGQQLQAARAQAAAEQ
Ga0182037_1139664313300016404SoilMILNLAAAARAVPLTALMLGACVSESAYEKQGAELQQARAQTAAEQSQLATMQQENK
Ga0182039_1176230723300016422SoilMKIDLAAAARIVPLTALMLGACVSQSAYEQQGQQLQAARAQAA
Ga0182038_1035507513300016445SoilMKIDLAAAARVVPLTALMLGACVSQSAYDKQGQELQAARSQAAAEQSQLNKL
Ga0182038_1050090523300016445SoilMRIDLTVAARIVPLTALILGACVSQSAYEKQGAELQAARAQAAAEQSQ
Ga0182038_1073523423300016445SoilMKIDLAAAARVVPLTALMLGACVSQSAYDALQAQNQQLQAQVAADKAQICRLQGA
Ga0066662_1297098323300018468Grasslands SoilMKMNLAATARIVPLTALMLGACVSQSAYDQVQAQNQQLQAQ
Ga0210407_1069016123300020579SoilMISDLKSAARVIPLTALMLAACVSEKTYEAQTQQLQAARTQ
Ga0210407_1093736723300020579SoilMNINLAAAARIIPLTALMLGACVSQSAYEKQGAELQQARTQAAAEQSQIAKM
Ga0210407_1102371013300020579SoilMINDLKAAARVIPLTALLLASCVSEKTYEQQTQQLQAARAQSAAA
Ga0210403_1047814223300020580SoilMTITLTAAARIVPLTGLLLSACISEKTYEAQTQQLQAARAQAAAEQSQIPKMQAANT
Ga0210403_1054396723300020580SoilMTVNPAAAARVIPLTALLLAACVSEKTYEQQTQPLQQARAQSAAELSQINKMQGANA
Ga0210399_1109920513300020581SoilMKINLPAAARVVPLAALMLAACVSKSAYEQQGQELQQARAQAAAEQSQIGKMQ
Ga0210401_1059636413300020583SoilMKMNPATAARIALLTALLLGACVSQSAFEQQGQQLEGAQAA
Ga0210404_1089995623300021088SoilMIIGLKAAARVIPLTALMLAACVSEKTYEAQTQQLQAARAQA
Ga0210405_1142958923300021171SoilMKINLPAAARVVPLAALMLAACVSKSAYEQQGQELQQARAQAAAEQSQIGKM
Ga0210408_1031572413300021178SoilMTINLTTAARVIPLTTLMLAACVSQSAYEKQGAELQQARAQ
Ga0213877_1024896723300021372Bulk SoilMIINLAAAARVVPLTALLLAACVSEKTYEQQTQQLQAARAQAAAEQSQIAKM
Ga0213876_1045646913300021384Plant RootsMIIDMRAVTRVIPLTALVLGACVSQSAYEKQGAELQQARAQATAEQ
Ga0210389_1022028733300021404SoilMNLNLTAAARIIPLTALMLGACVSQSAYEKQGAELQQAHTQAAAEQSQIAKMQHSTKSLRDSRLMR
Ga0210387_1046755133300021405SoilMKINLPAAARVVPLAALMLAACVSKSAYEQQGQELQQARAQAAAEQSQ
Ga0210383_1104568423300021407SoilMIIGLKAAARVIPLTALMLAACVSEKTYEAQTQQLQAARAQAAAEQSQIAKMQAEDKWV
Ga0210394_1175645423300021420SoilMTINLTTAARVIPLTTLMLAACVSQSAYEKQGAELQQARAQAVAEQSQITK
Ga0213871_1011939713300021441RhizosphereMKMDLVAAARVVPLTALMLGACVSQSAYEKQGAELQQA
Ga0126371_1055183823300021560Tropical Forest SoilMIINLAGAARLVPLTALTLGACVSQSAYEQQGQELQQARAQTAAE
Ga0242662_1009596023300022533SoilMITNRAAVSRIVPLTALILGACVSQSTYDQLQAQYQQLQAQN
Ga0257157_102681913300026496SoilMIINLAAVARAVPLAAIMLGACVSQSAYDQLQAQN
Ga0209799_109464623300027654Tropical Forest SoilMGIDLTTAARVVPLTALTSGASVSRSTYDKQTAVLQQARAQA
Ga0308309_1031361713300028906SoilMTITLTAAARIVPLTGLLLSACVSEKTYEAQTQQLQAARARAAAEQSQIAKMQAANT
Ga0308309_1043517613300028906SoilMKIDLAARIIPLTALMLGACVSQSAYEQHGQQLRAARAQAAAEQSQIGT
Ga0170824_10069494723300031231Forest SoilMKIDVAAAARLIPLTALVLAACVSEKRYEQQTQQLQRVRAQAAAESSHAIM
Ga0318516_1077040923300031543SoilMTANLAVTARFIPLTALLLAACVSKSAYEQQGQELQAASAQAAVEQS
Ga0318534_1067126223300031544SoilAMTANLAVTARFIPLTALLLAACVSKSAYEQQGQELQAASAQAAVEQS
Ga0318534_1071177323300031544SoilMAINLAKVARIVPLAALMLAACVSEQKYEQQTRELQAARAQAAAEQSQ
Ga0318541_1014753123300031545SoilMRIDLTAAARIIPHTALMLGACVSRSAYEKHGQEIHAARAQAAAKRSQISKMQKAQK
Ga0318541_1030909113300031545SoilMRIDLTAAARVVPLTALLLGACVSQSTYDKQTAEL
Ga0318528_1014416533300031561SoilMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQMSKMQKAQK
Ga0310915_1009039623300031573SoilMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQISKMQKAQK
Ga0318555_1021156313300031640SoilTANLAVTARFIPLTALLLAACVSKSAYEQQGQELQAASAQAVVEQS
Ga0318561_1002658213300031679SoilMIIDLTAAARLIPLTALMLGACVSQSAYEKQGQELQQARAQAAEQSQIAKM
Ga0318561_1047932513300031679SoilMKIDLAAAARIVPLTALMLGACVSQSAYEKQGAELQQARAQAAAEQS
Ga0318561_1049100323300031679SoilMKIDLAAAARVVPLTALMLGACVSQSAYDALQAQNQQLQAQVA
Ga0318574_1028382923300031680SoilMTINLSAAARVVPLTAVMLAACVSEKTYEAQTQQLQQARAQAAAEQSQ
Ga0318574_1041692533300031680SoilDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQISKMQKAQK
Ga0318574_1044608413300031680SoilMKIDLAAAARIVPLTALMLGACVSQSAYEQQGQQLQAARAQ
Ga0318572_1050091323300031681SoilMIINLAAVAWVVPLTALLLAACVSEKTYEQRTRQLQATRA
Ga0318496_1066229613300031713SoilRAGSMGYNLGGRAMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQISKMQKAQK
Ga0306917_1099608723300031719SoilMGYNLGGRAMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQISKMQKAQK
Ga0306917_1108184413300031719SoilMITGPAARIVPFTALMLAACVSESKYEAQTQQLQAAQAQSAAEQ
Ga0306917_1132194413300031719SoilMKIDLAAAARVVPLTALMLGACVSQSAYDALQAQNQQLQAQVAADK
Ga0318493_1031990113300031723SoilMTINLAVTARVIPLTALMLAACVSKSAYEQQGQELQAASAQAVVEQS
Ga0307468_10179379023300031740Hardwood Forest SoilMMSKLTAAASVIPLTALLLSACVSEKTYEAQTQQLQAARAQAATEQSQIAKMQAEN
Ga0318535_1002794213300031764SoilMTINLAAAARVVPFTALMLAACVSQSAYEQQSQELEQARAHAAAQQAEIAKM
Ga0318509_1067624523300031768SoilMKIDLTAATAPMLGGCVSQSTHDRQTAELQQARAQAAAEQGQIN
Ga0318521_1066319113300031770SoilMKIDLTAATAPMLGGCVSQSTHDRQTAELQQARAQAAAEQGQINK
Ga0318498_1042967723300031778SoilMRIDLTAAARVVPLTALLLGACVSQSTYDKQTAELQQSRAQAA
Ga0318547_1056073523300031781SoilMKIDLAAAARIVPLTALMLGACVSQSAYEKQGAELQQARAQAAAEQSQ
Ga0318548_1028922813300031793SoilMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQ
Ga0318548_1042975823300031793SoilMKIDLAAAARVVPLATLMLGACVSQSAYDALQAQNQQLQAQVAADKA
Ga0318557_1035103813300031795SoilMRIDLTAAARVVPLTALLLGACVSQSTYDKQTAELQQSRAQAAAE
Ga0318557_1040403013300031795SoilMAINLAKVARIVPLAALMLAACVSEQKYEQQTQELQA
Ga0318576_1001052543300031796SoilMTINLAAAARVVPFTALMLAACVSQSAYEQQSQEL
Ga0318550_1051404313300031797SoilMRIDLTAAARIIPHTALMLGACVSRSAYEKHGQEIHAARAQAAAKRSQIS
Ga0318567_1082582223300031821SoilDLTAAARIIPHTALMLGACVSRSAYEKHGQEIHAARAQAAAKRSQISKMQKAQK
Ga0318564_1044970723300031831SoilIGDTAMTANLAVTARFIPLTALLLAACVSKSAYEQQGQELQAASAQAVVEQS
Ga0318499_1025373413300031832SoilMKVNWTAAAGVVPLTALILGACVSESAYEKQTKQLQSAQAQSAAQQAE
Ga0318511_1021909223300031845SoilMTINLAAAARVVPFTALLLAACVSQSAYEQQSQELE
Ga0306919_1100112613300031879SoilMKIDLAAAARVVPLTALMLGARVSQSAYEQQGQQLQAA
Ga0306919_1112766823300031879SoilMTIDLGNAARVIPVTALMLAACVSKSAYEQQGQELQQARDQA
Ga0318544_1021745913300031880SoilMKIDLTAATAPMLGGCVSQSTHDRQTAELQQARAQAAAEQGQI
Ga0306925_1010610513300031890SoilMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQISKMQK
Ga0318551_1007493913300031896SoilMTANLAVTARFIPLTALLLAACVSKSAYEQQGQELQAASAQAVVEQS
Ga0318520_1068628313300031897SoilMKIDLTAAARIVPLTALLLGACVSQSTYDKQTAELQQARAQAATEQA
Ga0306923_1042446533300031910SoilMIINLAAAVRLVPLSEPMLGACVSQSADEQQGRELQEA
Ga0306923_1093426013300031910SoilMKVNWTAAAGVVPLTALILGACVSESAYEKQTKQLQSAQAQSAAQQAEIA
Ga0310912_1061249423300031941SoilMTINLAAAARVVPLTALILGACVSQGAYEQQTQQLQAARAQAAAEQQ
Ga0310916_1003354453300031942SoilMKIDLAAAARIVPLTALMLGACVSQSAYEKQGAELQ
Ga0310916_1050995713300031942SoilMKIDLAAAARVVPLATLMLGACVSQSAYDALQAQNQQLQAQVAA
Ga0310910_1139896423300031946SoilMKIDLAAAARVVPLATLMLGACVSQSAYDALQAQNQQLQAQVAADKAQIC
Ga0306926_1047034743300031954SoilMKIDLAAAARVVPLATLMLGACVSQSAYDALQAQNQQLQAQVAADKAQICR
Ga0306926_1093206233300031954SoilMKLDLTAAARVAPLTALILGACLSQSTYDKQTAELQRARAAAAEQPQLDKM
Ga0318507_1028491713300032025SoilRIDLTAAARIIPHTALMLGACVSRSAYEKHGQEIHAARAQAAAKRSQISKMQKAQK
Ga0310911_1080697913300032035SoilMIINLTAAARLIPLPALMLGACVSQSAYEKQGQELQQARAQRRWSSRR
Ga0318545_1037749413300032042SoilMRIDLTAAARIIPHTALMLGACVSRSAYEKHGQEIHA
Ga0318556_1038889433300032043SoilIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQISKMQKAQK
Ga0318556_1060713923300032043SoilMRIDLTAAARVVPLTALLLGACVSQSTYDKQTAELQ
Ga0318532_1012845213300032051SoilTANLAVTARFIPLTALLLAACVSKSAYEQQGQELQAASAQAAVEQS
Ga0318506_1008583713300032052SoilMTINLAVTARVIPLTALMLAACVSKSAYEQQGQELQAARAQAAAEQSQVAKMQAENKWVV
Ga0318575_1017213233300032055SoilIGDTAMTANLAVTARFIPLTALLLAACVSKSAYEQQGQELQAASAQAAVEQS
Ga0318524_1037523313300032067SoilMKIDLAAAARIVPLTALMLGACVSQGAYEKQGQELQ
Ga0306924_1029458213300032076SoilMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQA
Ga0306924_1200731723300032076SoilMKMDLAAAARVIPLTALMLGACVSQSAYEQQGQQLQAA
Ga0318577_1044945123300032091SoilGYNLGGRAMRIDLTAAARIIPHTALMLGACVSQSAYEKQGQEIQAARAQAVAERSQISKMQKAQK
Ga0306920_10253807323300032261SoilMKLDLTAAARIVPLTALMLGACVSQSAYEKQGQELQAARSQAAAE
Ga0310914_1020078323300033289SoilMTANLAVTTRFIPLTALLLAACVSKSAYEQQGQELQAASAQAAVEQS
Ga0310914_1122599223300033289SoilMKINLAAAARVVPLTALMLGACVSQSAYEQQGQQLQAARAQA
Ga0318519_1023175023300033290SoilMTINLAVTARVIPLTALMLAACVSKSAYEQQGQELQAARAHAA
Ga0318519_1065725613300033290SoilVTARFIPLTALLLAACVSKSAYEQQGQELQAASAQAVVEQS
Ga0318519_1073852013300033290SoilMKIDLTAAAVVVPFTALILGACVSQSAYEKQGAELQAARAQATAE


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