Metagenome Family F056716

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056716
Family Type	Metagenome
Number of Sequences	137
Average Sequence Length	81 residues
Representative Sequence	VHLKFSTDGVLRMLVGTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGGGPNETRRTEAG
Number of Associated Samples	47
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.52 %
% of genes near scaffold ends (potentially truncated)	35.77 %
% of genes from short scaffolds (< 2000 bps)	77.37 %
Associated GOLD sequencing projects	38
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.073 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (41.606 % of family members)
Environment Ontology (ENVO)	Unclassified (41.606 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (48.905 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.96% β-sheet: 7.02% Coil/Unstructured: 57.02%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF09424	YqeY	76.64
PF03023	MurJ	5.84
PF13439	Glyco_transf_4	1.46
PF09694	Gcw_chp	0.73
PF00483	NTP_transferase	0.73
PF13489	Methyltransf_23	0.73
PF01694	Rhomboid	0.73
PF00115	COX1	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	5.84
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	5.84
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	5.84
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.07 %
Unclassified	root	N/A	29.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.07 %
Unclassified	root	N/A	29.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.07 %
Unclassified	root	N/A	29.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.23 %
Unclassified	root	N/A	29.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.19 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	2.19 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.19 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	2.19 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.93 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	2.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.19 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.93 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	2.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.19 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.93 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.19 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_106252257	All Organisms → cellular organisms → Bacteria → Acidobacteria	1643	Open in IMG/M
3300003858\|Ga0031656_10009065	All Organisms → cellular organisms → Bacteria	4147	Open in IMG/M
3300003858\|Ga0031656_10030231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2235	Open in IMG/M
3300003858\|Ga0031656_10124966	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300003858\|Ga0031656_10217434	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300004151\|Ga0066602_10075621	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300004155\|Ga0066600_10226019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	820	Open in IMG/M
3300004778\|Ga0062383_10544091	Not Available	585	Open in IMG/M
3300005833\|Ga0074472_10334525	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300006224\|Ga0079037_100015122	All Organisms → cellular organisms → Bacteria	5228	Open in IMG/M
3300006224\|Ga0079037_100025073	All Organisms → cellular organisms → Bacteria	4298	Open in IMG/M
3300006224\|Ga0079037_100064778	All Organisms → cellular organisms → Bacteria	2930	Open in IMG/M
3300006224\|Ga0079037_100338997	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300006224\|Ga0079037_100573570	All Organisms → cellular organisms → Bacteria → Acidobacteria	1092	Open in IMG/M
3300006224\|Ga0079037_100669621	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300006224\|Ga0079037_100694929	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300006224\|Ga0079037_101147551	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300006224\|Ga0079037_102038000	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300006930\|Ga0079303_10039729	All Organisms → cellular organisms → Bacteria → Acidobacteria	1623	Open in IMG/M
3300006930\|Ga0079303_10066972	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300006930\|Ga0079303_10416235	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300009091\|Ga0102851_10001746	All Organisms → cellular organisms → Bacteria	12722	Open in IMG/M
3300009091\|Ga0102851_10085410	All Organisms → cellular organisms → Bacteria	2683	Open in IMG/M
3300009091\|Ga0102851_10099905	All Organisms → cellular organisms → Bacteria	2512	Open in IMG/M
3300009091\|Ga0102851_10234328	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300009091\|Ga0102851_11043540	Not Available	891	Open in IMG/M
3300009091\|Ga0102851_11576762	Not Available	734	Open in IMG/M
3300009091\|Ga0102851_11860316	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300009091\|Ga0102851_12301589	Not Available	614	Open in IMG/M
3300009111\|Ga0115026_10526544	Not Available	884	Open in IMG/M
3300009111\|Ga0115026_11064911	Not Available	650	Open in IMG/M
3300009131\|Ga0115027_10063507	All Organisms → cellular organisms → Bacteria	1968	Open in IMG/M
3300009131\|Ga0115027_10189785	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300009131\|Ga0115027_10252216	All Organisms → cellular organisms → Bacteria → Acidobacteria	1159	Open in IMG/M
3300009131\|Ga0115027_10253155	All Organisms → cellular organisms → Bacteria → Acidobacteria	1157	Open in IMG/M
3300009167\|Ga0113563_10036967	Not Available	3971	Open in IMG/M
3300009167\|Ga0113563_10067834	Not Available	3113	Open in IMG/M
3300009167\|Ga0113563_10259355	All Organisms → cellular organisms → Bacteria → Acidobacteria	1774	Open in IMG/M
3300009167\|Ga0113563_10476388	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300009167\|Ga0113563_11497350	Not Available	795	Open in IMG/M
3300009167\|Ga0113563_11818566	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300009167\|Ga0113563_11843111	Not Available	720	Open in IMG/M
3300009167\|Ga0113563_12735428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300009167\|Ga0113563_13580930	Not Available	526	Open in IMG/M
3300009179\|Ga0115028_10022301	All Organisms → cellular organisms → Bacteria	2764	Open in IMG/M
3300009179\|Ga0115028_10559411	All Organisms → cellular organisms → Bacteria → Acidobacteria	845	Open in IMG/M
3300009179\|Ga0115028_11498052	Not Available	572	Open in IMG/M
3300009179\|Ga0115028_11939138	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300010412\|Ga0136852_10868812	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300024056\|Ga0124853_1166080	All Organisms → cellular organisms → Bacteria	2176	Open in IMG/M
3300027715\|Ga0208665_10003035	All Organisms → cellular organisms → Bacteria	3622	Open in IMG/M
3300027841\|Ga0209262_10010462	All Organisms → cellular organisms → Bacteria	3791	Open in IMG/M
3300027843\|Ga0209798_10034374	All Organisms → cellular organisms → Bacteria	2679	Open in IMG/M
3300027871\|Ga0209397_10322499	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300027871\|Ga0209397_10496439	Not Available	606	Open in IMG/M
3300027871\|Ga0209397_10560804	Not Available	570	Open in IMG/M
3300027877\|Ga0209293_10294872	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300027885\|Ga0209450_10053542	Not Available	2507	Open in IMG/M
3300027885\|Ga0209450_10272453	All Organisms → cellular organisms → Bacteria → Acidobacteria	1217	Open in IMG/M
3300027885\|Ga0209450_10644431	Not Available	772	Open in IMG/M
3300027885\|Ga0209450_10964366	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300027887\|Ga0208980_10562614	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300027890\|Ga0209496_10002151	All Organisms → cellular organisms → Bacteria	3865	Open in IMG/M
3300027897\|Ga0209254_10020171	All Organisms → cellular organisms → Bacteria	6079	Open in IMG/M
3300027897\|Ga0209254_10026844	All Organisms → cellular organisms → Bacteria	5195	Open in IMG/M
3300027897\|Ga0209254_10146824	All Organisms → cellular organisms → Bacteria → Acidobacteria	1936	Open in IMG/M
3300027897\|Ga0209254_10735250	Not Available	676	Open in IMG/M
3300027899\|Ga0209668_10063303	All Organisms → cellular organisms → Bacteria → Acidobacteria	2039	Open in IMG/M
3300027900\|Ga0209253_10038836	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3971	Open in IMG/M
3300027900\|Ga0209253_10606934	Not Available	802	Open in IMG/M
3300031834\|Ga0315290_10677153	Not Available	890	Open in IMG/M
3300031834\|Ga0315290_11513615	Not Available	545	Open in IMG/M
3300031997\|Ga0315278_10263525	All Organisms → cellular organisms → Bacteria → Acidobacteria	1780	Open in IMG/M
3300032143\|Ga0315292_11378832	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300032164\|Ga0315283_10071150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3567	Open in IMG/M
3300032164\|Ga0315283_10441196	All Organisms → cellular organisms → Bacteria → Acidobacteria	1415	Open in IMG/M
3300032397\|Ga0315287_12021119	Not Available	634	Open in IMG/M
3300033406\|Ga0316604_10767289	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300033408\|Ga0316605_10006550	All Organisms → cellular organisms → Bacteria	6716	Open in IMG/M
3300033408\|Ga0316605_10013160	All Organisms → cellular organisms → Bacteria	5015	Open in IMG/M
3300033408\|Ga0316605_10041528	All Organisms → cellular organisms → Bacteria	3180	Open in IMG/M
3300033408\|Ga0316605_10043654	All Organisms → cellular organisms → Bacteria	3116	Open in IMG/M
3300033408\|Ga0316605_10172975	All Organisms → cellular organisms → Bacteria → Acidobacteria	1784	Open in IMG/M
3300033408\|Ga0316605_10693437	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300033408\|Ga0316605_11265085	All Organisms → cellular organisms → Bacteria → Acidobacteria	713	Open in IMG/M
3300033408\|Ga0316605_11723189	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300033408\|Ga0316605_11735212	Not Available	607	Open in IMG/M
3300033408\|Ga0316605_11767898	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300033408\|Ga0316605_12479013	Not Available	504	Open in IMG/M
3300033413\|Ga0316603_10006641	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	6777	Open in IMG/M
3300033413\|Ga0316603_10301713	All Organisms → cellular organisms → Bacteria → Acidobacteria	1415	Open in IMG/M
3300033413\|Ga0316603_10410886	All Organisms → cellular organisms → Bacteria → Acidobacteria	1225	Open in IMG/M
3300033413\|Ga0316603_11021720	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300033413\|Ga0316603_11110025	All Organisms → cellular organisms → Bacteria → Acidobacteria	748	Open in IMG/M
3300033414\|Ga0316619_11026716	All Organisms → cellular organisms → Bacteria → Acidobacteria	719	Open in IMG/M
3300033414\|Ga0316619_11322017	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300033416\|Ga0316622_100080454	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3197	Open in IMG/M
3300033416\|Ga0316622_100348044	All Organisms → cellular organisms → Bacteria	1648	Open in IMG/M
3300033416\|Ga0316622_101499458	Not Available	787	Open in IMG/M
3300033416\|Ga0316622_101941940	Not Available	684	Open in IMG/M
3300033416\|Ga0316622_102084673	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300033416\|Ga0316622_102831900	Not Available	555	Open in IMG/M
3300033416\|Ga0316622_103074260	Not Available	530	Open in IMG/M
3300033418\|Ga0316625_100080682	All Organisms → cellular organisms → Bacteria → Acidobacteria	1746	Open in IMG/M
3300033418\|Ga0316625_100445094	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300033418\|Ga0316625_101486774	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300033418\|Ga0316625_102147646	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300033418\|Ga0316625_102524421	Not Available	520	Open in IMG/M
3300033419\|Ga0316601_100066297	All Organisms → cellular organisms → Bacteria → Acidobacteria	2760	Open in IMG/M
3300033419\|Ga0316601_100852578	All Organisms → cellular organisms → Bacteria → Acidobacteria	903	Open in IMG/M
3300033419\|Ga0316601_101177747	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300033419\|Ga0316601_101542769	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300033481\|Ga0316600_10978401	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300033481\|Ga0316600_11203151	Not Available	538	Open in IMG/M
3300033481\|Ga0316600_11240904	Not Available	529	Open in IMG/M
3300033482\|Ga0316627_100657953	All Organisms → cellular organisms → Bacteria → Acidobacteria	965	Open in IMG/M
3300033482\|Ga0316627_100776358	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300033482\|Ga0316627_100828000	Not Available	878	Open in IMG/M
3300033482\|Ga0316627_101221883	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300033482\|Ga0316627_101946458	Not Available	608	Open in IMG/M
3300033483\|Ga0316629_10793522	All Organisms → cellular organisms → Bacteria → Acidobacteria	726	Open in IMG/M
3300033483\|Ga0316629_10933399	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300033483\|Ga0316629_11060785	Not Available	640	Open in IMG/M
3300033487\|Ga0316630_11747605	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300033488\|Ga0316621_11004939	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300033488\|Ga0316621_11007863	Not Available	621	Open in IMG/M
3300033521\|Ga0316616_101335972	Not Available	920	Open in IMG/M
3300033521\|Ga0316616_101878774	Not Available	789	Open in IMG/M
3300033521\|Ga0316616_101998917	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300033521\|Ga0316616_103280176	Not Available	610	Open in IMG/M
3300033521\|Ga0316616_104290905	Not Available	537	Open in IMG/M
3300033557\|Ga0316617_100180827	All Organisms → cellular organisms → Bacteria → Acidobacteria	1648	Open in IMG/M
3300033557\|Ga0316617_100702195	All Organisms → cellular organisms → Bacteria → Acidobacteria	955	Open in IMG/M
3300033557\|Ga0316617_101512199	Not Available	677	Open in IMG/M
3300034056\|Ga0373893_004239	All Organisms → cellular organisms → Bacteria → Acidobacteria	1425	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.27%
Engineered	Engineered	0.73%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	54.74%
Terrestrial	Environmental → Terrestrial	44.53%
Bioremediation	Engineered → Bioremediation	0.73%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	51.82%
Soil	Environmental → Terrestrial → Soil	41.61%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.92%
Marine	Environmental → Aquatic → Marine	1.46%
Sediment	Environmental → Aquatic → Sediment	1.46%
Metal	Engineered → Bioremediation → Metal	0.73%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	41.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.17%
Sediment	Environmental → Aquatic → Freshwater → Sediment	10.95%
Lentic	Environmental → Aquatic → Freshwater → Lentic	10.95%
Lake	Environmental → Aquatic → Freshwater → Lake	6.57%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.92%
Pond	Environmental → Aquatic → Freshwater → Pond	2.19%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.46%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	41.61%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	21.17%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	10.95%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	10.95%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.57%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.92%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	2.19%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.46%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	41.61%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	19.71%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	10.95%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	10.95%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.57%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.92%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	2.19%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.46%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.46%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.73%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.73%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300004151	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5	Environmental	Open in IMG/M
3300004155	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034056	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1062522573	3300001213	Wetland	MHVGANGGNGSALNGTMKLMEAALLMERLQARAAHAGEVEALKIARDALLTIVAEGYATLADRLGDGHNGAHRPEAD*
Ga0031656_100090652	3300003858	Freshwater Lake Sediment	VHLKFSTNGVLRMLVGTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGGGPNGTGRTEAG*
Ga0031656_100302313	3300003858	Freshwater Lake Sediment	VHLKFSTNGVLRMLVGTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGGGPNGTGRIEAG*
Ga0031656_101249662	3300003858	Freshwater Lake Sediment	VHLKFLTDGVLRMPVGTNGSKHNSKMNLMDAALLVERLQSRAAHAGEIEALKIARDALLTXVAEGYTTLADRLGEGPNGTRRTEAG*
Ga0031656_102174342	3300003858	Freshwater Lake Sediment	VHLKFLTDGVLRMPVRTNGSKPNDKMNLMDAALLVERLQSRAAHAGEVEALXIARDALLTIVAEGYSTLADRLGEGSNGAHRTEAG*
Ga0066602_100756213	3300004151	Freshwater	NLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYSTLADRLGEGSNGAHRTEAG
Ga0066600_102260191	3300004155	Freshwater	VHLKFLTDGVLRMPVRTNGSKPNDKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYSTLADRLGEGSNGAHRTEAG*
Ga0062383_105440911	3300004778	Wetland Sediment	VQLKFLTGGELRMQIGTVGVRQNGTMKLMEAALLVERLQGRAAHAGEVEALQIARDALLTIVAEGYSTLA
Ga0074472_103345252	3300005833	Sediment (Intertidal)	VQLKFLTGGELRMQIGTVGVRQNGTMKLMEAALLVERLQGRAAHAGEVEALQIARDALLTIVAEGYSTLADRLTNAACRARRPDAS*
Ga0079037_1000151224	3300006224	Freshwater Wetlands	VQLKFLTDGVLRMQVGTNGTNGSKVGGKMKLMEAALLVERLQARAAHAGEVEALKLARDALLTIVAEGYTTLADRLGGGQCEAERLAD*
Ga0079037_1000250733	3300006224	Freshwater Wetlands	VHLKFLTDGVLRMPVGSNGAEPNGKMKLMDAALLVERLQGRAAHPGEVEALKIARDALLTIVAEGYTTLADRLGEHPDETGRAGAG*
Ga0079037_1000647781	3300006224	Freshwater Wetlands	LQLKLLTDGVLRMQIGTNGSKPNGKMRLIEAAFVVERLQSRAAHAREVEALKIARDALLTIVAEGYVTLEDRLGERTNEARRHEAG*
Ga0079037_1003389973	3300006224	Freshwater Wetlands	VHLKFLTDGVLRMQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKLARDALLTIVAEGYVTLADRLGEGVNGARRTNDAA*
Ga0079037_1005735702	3300006224	Freshwater Wetlands	MQAETNGSKPNGKMKLMEAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLEEAPNGRTPTSAG*
Ga0079037_1006696212	3300006224	Freshwater Wetlands	MKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG*
Ga0079037_1006949291	3300006224	Freshwater Wetlands	VHLKFLTDGVLRMQMGTNGTNGTNGCKVNGTMKLMEAALLMERLQARAAHAGEVEALKMARDALLTLVAEGYTTLADRLGERQNGTDRPEAG*
Ga0079037_1011475512	3300006224	Freshwater Wetlands	VGTNGTTPNGKMNLMEAALLVERLQARAAHAGEFEALRMARDALLTIVAEGYTTLADRLGGHNSETSPSETAS*
Ga0079037_1020380002	3300006224	Freshwater Wetlands	QVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRMARNALLTIVAEGYTTLEDRLGGEPGWTGRTETG*
Ga0079303_100397293	3300006930	Deep Subsurface	VHMKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG*
Ga0079303_100669722	3300006930	Deep Subsurface	VHLKFLTDGVLRMQVGPNGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKLARDALLTIVAEGYVTLADRLGEGVNGARRTNDAA*
Ga0079303_104162352	3300006930	Deep Subsurface	KPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGTGRHETG*
Ga0102851_1000174613	3300009091	Freshwater Wetlands	VHLKFLTDGVLRMPVGSNGAEPSGKMKLMDAALLVERLQGRAAHPGEVEALKIARDALLTIVAEGYTTLADRLSEHHDEAPRAEVG*
Ga0102851_100854104	3300009091	Freshwater Wetlands	MKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTIVAEGYTTLEDRLGGEPSWTERTETG*
Ga0102851_100999052	3300009091	Freshwater Wetlands	MGTVHVKYLTDGVLRMQAETNGSKPNGKMKLMEAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLEEAPNGRTPTSAG*
Ga0102851_102343281	3300009091	Freshwater Wetlands	MKLTDGVLRMQVGTNGSKPNGKMKLMDAALLLERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG*
Ga0102851_110435401	3300009091	Freshwater Wetlands	MQIGTNGSKPNGKMRLIEAAFVVERLQSRAAHAREVEALKIARDALLTIVAEGYVTLEDRLGERTNEARRHEAG*
Ga0102851_115767621	3300009091	Freshwater Wetlands	MQVGTNGTNGSKVGGKMKLMEAALLVERLQARAAHAGEVEALKLARDALLTIVAEGYTTLADRLGGGQCEAERLAD*
Ga0102851_118603161	3300009091	Freshwater Wetlands	NGTKLNGRMNLMEAALMVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGEGQTEAQRPEAG*
Ga0102851_123015891	3300009091	Freshwater Wetlands	MQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKVARDALLTIVAEGYVTLADRLGEGVN
Ga0115026_105265442	3300009111	Wetland	MQVGSNGANGTKLNGKMKLMEAALLVERLQARAAHAGEVEALQIARDALLTIVAEGYTTLADRLGNGNNGEQRPEAV*
Ga0115026_110649111	3300009111	Wetland	MKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTIVAEGYTTLEDRLGGEP
Ga0115027_100635073	3300009131	Wetland	MKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRMARNALLTIVAEGYTTLEDRLGGEPGWTERTETG*
Ga0115027_101897853	3300009131	Wetland	VLRMQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKVARDALLTIVAEGYVTLADRLGEGVNGARRTNNAA*
Ga0115027_102522161	3300009131	Wetland	LSGCIRRGTVQLKFLTDGVLRMQVGTNGTNGSKVGGKMKLMEAALLVERLQARAAHAGEVEALKLARDALLTIVAEGYTTLADRLGGGQCEAERLAD*
Ga0115027_102531553	3300009131	Wetland	VHLKFLTDGVLRMQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLGERINGARRPEAS*
Ga0113563_100369672	3300009167	Freshwater Wetlands	VHLKFLTDGVLRMHVRTNGTDGTKPNGTMKLMEAALVVERLQARAAHAGEVEALRMARDALLTIVAEGYATLADRLGDGRDGNRQLAAD*
Ga0113563_100678344	3300009167	Freshwater Wetlands	VRLKFLRDGVLRMPVDSNGSAPNGKMKLMDAALLVERLQARAAHSGELEALKIARDALLTIVAEGYTTLADRLG
Ga0113563_102593551	3300009167	Freshwater Wetlands	MGTVHVKYLTDGVLRMQAETNGSKPNGKMKLMEAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLEEAPNGRAPTSAG*
Ga0113563_104763882	3300009167	Freshwater Wetlands	MPVGLNGSEANGKMKLMDAALLVERLQARAAHQGEVEALKIARDALLTIVAEGYTTLADRLGEHRAEMGRAEGG*
Ga0113563_114973501	3300009167	Freshwater Wetlands	MQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKVARDALLTIVAEGYVTLADRLGEGVNGARRTNDAA*
Ga0113563_118185662	3300009167	Freshwater Wetlands	LTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTIVAEGYTTLEDRLGGEPSWTERTETG*
Ga0113563_118431112	3300009167	Freshwater Wetlands	MQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGARRPEAS*
Ga0113563_127354282	3300009167	Freshwater Wetlands	WPACIRRQTVHRKIMTAGRLRTPVETNGSKPNGRMKLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLEDRLGEEPNGMRRTESV*
Ga0113563_135809301	3300009167	Freshwater Wetlands	LHLKLLTDGVLRMQIATNGSKANGKMRLIETALLVERLQPRAAHASEVEALKIARDALLTIVAEGYVTLADRL
Ga0115028_100223011	3300009179	Wetland	CIRRGTVHMKFLTDGVLRMPAGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRMARNALLTIVAEGYTTLEDRLGGEPGWTERTEAG*
Ga0115028_105594112	3300009179	Wetland	MQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGTGRHDTA*
Ga0115028_114980521	3300009179	Wetland	VHLKFLTDGVLRMQVGSNGANGTKLNGKMKLMEAALLVERLQARAAHAGEVEALQIARDALLTIVAEGYATLADRLGESVSGARRTDDAA*
Ga0115028_119391381	3300009179	Wetland	RDGVLRMQVGANGTNGSKPNGKMRLMDAALVVERLQARAAHAGEVEALKLARDALLTIVAEGYVTLADRLGEGVNGARRTNNAA*
Ga0136852_108688122	3300010412	Mangrove Sediment	TDGELRMQVGTNGAHASKVNGRMKLMEAALLMERLQARAAHAGEVEALKMARDALLTIVAEGYITLADRLEGSRPGSDRPSAD*
Ga0124853_11660801	3300024056	Freshwater Wetlands	MQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKVARDALLTIVAEGYVTLADRLGEGVNGARRTNNAA
Ga0208665_100030352	3300027715	Deep Subsurface	VHMKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG
Ga0209262_100104622	3300027841	Freshwater	VHLKFLTDGVLRMPVRTNGSKPNDKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYSTLADRLGEGSNGAHRTEAG
Ga0209798_100343741	3300027843	Wetland Sediment	VQLKFLTGGELRMQIGTVGVRQNGTMKLMEAALLVERLQGRAAHAGEVEALQIARDALLTIVAEGYSTLAD
Ga0209397_103224991	3300027871	Wetland	VHLKLLTDGVLRMQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGTGRHETG
Ga0209397_104964392	3300027871	Wetland	MKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG
Ga0209397_105608042	3300027871	Wetland	VHLKFLTDGVLRMQVGSNGANGTKLNGKMKLMEAALLVERLQARAAHAGEVEALQIARDALLTIVAEGYTTLADRLGNGNNGEQRPEAV
Ga0209293_102948721	3300027877	Wetland	MKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTIVAEGYTTLEDRLGGEPSWTERTETG
Ga0209450_100535422	3300027885	Freshwater Lake Sediment	LHLKLLTDGVLRMQIGTNGSKPNGKMRLIEAAFVVERMQSRAAHEGEVEALKIARDALLTIVAEGYVTLADRLGERTNGARRHEAG
Ga0209450_102724533	3300027885	Freshwater Lake Sediment	VHLKFLTDGVLRMQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGARRPEAS
Ga0209450_106444311	3300027885	Freshwater Lake Sediment	MLVGTNGSKPNGKMNLMDAALMVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGGGPSGTGRTEAG
Ga0209450_109643662	3300027885	Freshwater Lake Sediment	MQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGTGRHETG
Ga0208980_105626142	3300027887	Wetland	VHLKFLTDGVLRMHVGANGGNGSALNGTMKLMEAALLMERLQARAAHAGEVEALKIARDALLTIVAEGYATLADRLGDGHNGAHRPEAD
Ga0209496_100021511	3300027890	Wetland	RMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRMARNALLTIVAEGYTTLEDRLGGEPGWTERTEAG
Ga0209254_100201711	3300027897	Freshwater Lake Sediment	VHLKFSTNGVLRMLVGTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGGGPNGTGRTEAG
Ga0209254_100268445	3300027897	Freshwater Lake Sediment	VHLKFSTNGVLRMLVGTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGGGPNGTGRIEAG
Ga0209254_101468243	3300027897	Freshwater Lake Sediment	VHLKFLTDGVLRMPVGTNGSKHNSKMNLMDAALLVERLQSRAAHAGEIEALKIARDALLTIVAEGYTTLADRLGEGPNGTRRTEAG
Ga0209254_107352501	3300027897	Freshwater Lake Sediment	VHLKFLTDGVLRMPVRTNGSKPNDKMNLMDAALLVERLQSRAAHAGEVEALRIARDALLTIVAEGYSTLADRLGEGSNGAHR
Ga0209668_100633033	3300027899	Freshwater Lake Sediment	MPVRTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGEGPDGTHRAQAG
Ga0209253_100388363	3300027900	Freshwater Lake Sediment	VHLKFLTDGVLRMPVRTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGEGPDGTHRAQAG
Ga0209253_106069342	3300027900	Freshwater Lake Sediment	VHLKFSTDGVLRMLVGTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGGGPNETRRTEAG
Ga0315290_106771532	3300031834	Sediment	MLVGTNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGGGPNETRRTEAG
Ga0315290_115136152	3300031834	Sediment	MPVRTNGSKPDGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGEGPDGTHRAQAG
Ga0315278_102635252	3300031997	Sediment	MPVRTNGSKLNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGEGPDGTHRAQAG
Ga0315292_110066471	3300032143	Sediment	GVTIEHGANGTSNNGRMTLMEAALLMERLQGRAAHSGELEALKIARDALLTMVSEGYLTLGDRLHPHTDARRPE
Ga0315292_113788321	3300032143	Sediment	TNGSKPNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGEGPDGTHRTEAV
Ga0315283_100711504	3300032164	Sediment	VHLKFLTDGVLRMPVRTNGSKLNGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGEGPDGTHRAQAG
Ga0315283_104411961	3300032164	Sediment	VHLKFLTDGVLRMPVRTNGSKPNGNMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLSDRLGQGPNGTHRTEAG
Ga0315271_110313171	3300032256	Sediment	MEPGTNGTRNNGRMTLMEAALLMERLQGRAAHSGELEALKIARDALLTIVSEGYLTLGDRLHPPSGANRSS
Ga0315287_120211191	3300032397	Sediment	MPVRTNGSKPDGKMNLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLADRLGEGPGGTHRTQAG
Ga0316604_107672891	3300033406	Soil	GTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG
Ga0316605_100065501	3300033408	Soil	VHLKFLTDGVLRMHVRTNGTDGTKPNGTMKLMEAALVVERLQARAAHAGEVEALRMARDALLTIVAEGYATLADRLGDGRDGNRQLAAD
Ga0316605_100131605	3300033408	Soil	VHLKFLREGTLRMPVGLNGSEANGKMKLMDAALLVERLQARAAHQGEVEALKIARDALLTIVAEGYTTLADRLGEHRAEMGRAEGG
Ga0316605_100415283	3300033408	Soil	VQLKFLTDGVLRMQVGTNGTNGSKVGGKMKLMEAALLVERLQARAAHAGEVEALKLARDALLTIVAEGYTTLADRLGGGQCEAERLAD
Ga0316605_100436544	3300033408	Soil	VHLKFLTDGVLRMPVGSNGAEPSGKMKLMDAALLVERLQGRAAHPGEVEALKIARDALLTIVAEGYTTLADRLGEHPDETGRAGAG
Ga0316605_101729752	3300033408	Soil	VHLKFLTDGVLRMQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKVARDALLTIVAEGYVTLADRLGEGVNGARRTNNAA
Ga0316605_106934371	3300033408	Soil	VHLKFLTDGVLRMPVGSNESEPNGKMKLMDAALLVERLQGRAAHPGEVEALKIARDALLTIVAEGYTTLADRLGKHHDETRRAEVG
Ga0316605_112650852	3300033408	Soil	SKPNGKMKLMDAALVVERLQARAAHAGEVEALRLARDALLTIVAEGYVTLADRLGEGVNGVRQTKDAA
Ga0316605_117231892	3300033408	Soil	VHLKFLTDGVLRMQVGANGTNGSKLNGKMKLMDAALVVERLQARAAHAGEVEALRLARDALLTIVAEGYATLADRLGEGVNGAHRTNDAA
Ga0316605_117352122	3300033408	Soil	VHLKFLTDGVLRMQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALRVARDALLTIVAEGYVTLADRLGEGANGSRRTDSAA
Ga0316605_117678981	3300033408	Soil	GTVHLKFLTDGVLRMQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLGERINGARRPEAS
Ga0316605_124790131	3300033408	Soil	VHLKFLTDGVLRMQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKLARDALLTIVAEGYVTLADRLGEGVNGARRTNDAA
Ga0316603_100066414	3300033413	Soil	VHLKFLTDGVLRMHVGTNGTDGTKPNGTMKLMEAALVVERLQARAAHAGEVEALRMARDALLTIVAEGYATLADRLGDGRDGNRQLAAD
Ga0316603_103017133	3300033413	Soil	VHLKFLTDGVLRMQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLGERINGARRPEAS
Ga0316603_104108862	3300033413	Soil	VHLKFLTDGVLRMPVGSNGAEPNGKMKLMDAALLVERLQGRAAHPGEVEALKIARDALLTIVAEGYTTLADRLGEHPDETGRAGAG
Ga0316603_110217201	3300033413	Soil	LKFLTDGVLRMQVGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALRVARDALLTIVAEGYVTLADRLGEGANGSRRTDSAA
Ga0316603_111100252	3300033413	Soil	IRMGTVHVKYLTDGVLRMQAETNGSKPNGKMKLMEAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLEEAPNGRAPTSAG
Ga0316619_110267161	3300033414	Soil	KMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTIVAEGYTTLEDRLGGEPSWTERTETG
Ga0316619_113220172	3300033414	Soil	MQIGTNGSKANGEMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERINGARRPEAS
Ga0316622_1000804544	3300033416	Soil	MYLKFLTNGVLRMQVGTNGTTPNGKMNLMEAALLVERLQARAAHAGEFEALRMARDALLTIVAEGYTTLADRLGGHNSETSPSETAS
Ga0316622_1003480443	3300033416	Soil	VRLKFLRDGVLRMPVDSNGSAPNGKMKLMDAALLVERLQARAAHSGEVEALKIARDALLTIVAEGYTTLADRLGEHPDETGRAGAG
Ga0316622_1014994582	3300033416	Soil	VHLKFLTDGVLRMQMGTNGTNGTNGCKVNGTMKLMEAALLMERLQARAAHAGEVEALKMARDALLTLVAEGYTTLADRLGERQNGTDRPEAG
Ga0316622_1019419402	3300033416	Soil	LKLLTDGVLRMQIGTNGSKPNGKMRLIEAAFVVERLQSRAAHAREVEALKIARDALLTIVAEGYVTLEDRLGERTNEARRHEAG
Ga0316622_1020846731	3300033416	Soil	MQVGTIGATQNGTMKLMEAALLVERLQRRAAHAREVEALQIARDALLTIVAEGYSTLADRLSNPTSGTRRPEAG
Ga0316622_1028319001	3300033416	Soil	MTLTDGVLRMQVGTNGSRPNGQMKLMDAALLVEKLQSRAAHAGEVEALRIARNALLTIVAEGYTTLEDRLGGEPGWTGRTETG
Ga0316622_1030742601	3300033416	Soil	MQAETNGSKPNGKMKLMEAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLEEAPNGRAPTSAG
Ga0316625_1000806822	3300033418	Soil	VHLKLLRDGVLRMQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGTGRHETG
Ga0316625_1004450942	3300033418	Soil	VHLKFLTDGVLRMQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGAKRPEAS
Ga0316625_1014867743	3300033418	Soil	NGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKLARDALLTIVAEGYVTLADRLGEGVNGARRTNDAA
Ga0316625_1021476461	3300033418	Soil	GVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTIVAEGYTTLEDRLGGEPSWTERTETG
Ga0316625_1025244211	3300033418	Soil	TVQLKFLTDGVLRMQVGANGTKPNGRMNLMEAALMVERLQARAAHAGEVEALKIARDALLTIVAEGYTTLADRLGNGNNGEQRPEAV
Ga0316601_1000662971	3300033419	Soil	VHLKFLREGTLRMPVGLNGSEANGKMKLMDAALLVERLQARAAHQGEVEALKIARDALLTIVAEGYTTLADRLGEHRAELGRAE
Ga0316601_1008525783	3300033419	Soil	ETNGSKPNGKMKLMEAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLEEAPNGRAPTSAG
Ga0316601_1011777472	3300033419	Soil	QTVHRKIMTDGALRMQVETNGSKPNGRMKLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLEDRLGEEPNGMRRTESV
Ga0316601_1015427691	3300033419	Soil	NGARPNGRMKLMDAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYTTLEDRLGEELNGTRGTESV
Ga0316600_109784011	3300033481	Soil	SIRRGAVHLKFLTDGVLRMPVGSNGAEPNGKMKLMDAALLVERLQGRAAHPGEVEALKIARDALLTIVAEGYTTLADRLGEHPDETGRAGAG
Ga0316600_112031512	3300033481	Soil	MHAPTNGNKPNGKMTLMEAALLVERLQSRAAHAGEVEALKMARDALLTIVAEGYSTLADRLRRQANETPAG
Ga0316600_112409041	3300033481	Soil	MKFLTDGVLRMPAGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTIVAEGYTTLEDRLDGKSGWTGRTEDG
Ga0316627_1006579531	3300033482	Soil	MQIGTDGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGARRPEAS
Ga0316627_1007763581	3300033482	Soil	LRMPVGLNGSEANGKMKLMDAALLVERLQARAAHQGEVEALKIARDALLTIVAEGYTTLADRLGEHRAELGRAEGG
Ga0316627_1008280002	3300033482	Soil	MQAETNGSKPNGKMKLMEAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLEDRLEEAPNGRTPTSAG
Ga0316627_1012218832	3300033482	Soil	RGTVHMKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG
Ga0316627_1019464581	3300033482	Soil	MKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRMARNALLTIVAEGYTTLEDRLGGDPSW
Ga0316629_107935221	3300033483	Soil	TNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG
Ga0316629_109333991	3300033483	Soil	MQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERTNGATRHEST
Ga0316629_110607851	3300033483	Soil	MQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLGERINGARRPEAS
Ga0316630_117476051	3300033487	Soil	PNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG
Ga0316621_110049391	3300033488	Soil	KMKLMDAALVVERLQARAAHAGELEALKLARDALLTIVAEGYVTLADRLGEGVNGARRTNDAA
Ga0316621_110078631	3300033488	Soil	VHLKFLTDGVSRMQVGSNGTNGSKPNGKMKLMDAALVVERLQARAAHAGELEALKLARDALLTIVAEGYLTLADRLGEGV
Ga0316616_1013359722	3300033521	Soil	MGTVHVKYLTDGVLRMQAETNGSKPNGKMKLMEAALLVERLQSRAAHAGEVEALKIARDALLTIVAEGYATLEDRLEEAPNGRTPT
Ga0316616_1018787742	3300033521	Soil	MKLTDGVLRMQVVTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARNALLTFVAEGYTTLEDRLGGEPGWTERTETG
Ga0316616_1019989171	3300033521	Soil	KPNGKMRLMDAALVVERLQARAAHAGEVEALKLARDALLTIVAEGYVTLADRLGEGVNGARRTNNAA
Ga0316616_1032801761	3300033521	Soil	VHLKFLTDGVLQMQIGTNGSKANGEMRLIEAAFLVERLQSRAAHAGEVEALKIARDALLTIVAEGYVTLADRLGERVNGARRPEAS
Ga0316616_1042909051	3300033521	Soil	VHLKFLTDGVLRMQIGANGTNGSKPNGKMKLMDAALVVERLQARAAHAGEVEALKLARDALLTIVAEGYVT
Ga0316617_1001808273	3300033557	Soil	VHMKLTDGVLRMQVGTNGSKPNGKMKLMDAALLVERLQSRAAHAGEVEALRIARDALLTIVAEGYTTLEDRLGGEPSWTERTETG
Ga0316617_1007021951	3300033557	Soil	VHLKFLTDGVLRMQTGASGSHGTNGSKPNGTMKLLEAALLVERLQARAAHAGEVEALKMARDALLTIVAEGYVTLADRLGEGVNGTRRTDDAA
Ga0316617_1015121992	3300033557	Soil	MQVGTNGTNGSKVGGKMKLMEAALLVERLQARAAHAGEVEALKLARDALLTIVAEGYTTLADRLGGGQCEAERLAD
Ga0373893_004239_1200_1424	3300034056	Sediment Slurry	MQIGTNGSKPNGKMRLIEAAFLVERLQSRAAHAGEVEALRIARDALLTIVAEGYVTLADRLGEKTNGARRHETA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F056716

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences