Metagenome / Metatranscriptome Family F056592

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056592
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	85 residues
Representative Sequence	MDLEVVIEGVSDVGVANEIKRKIQQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL
Number of Associated Samples	105
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	22.63 %
% of genes from short scaffolds (< 2000 bps)	82.48 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.401 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (8.759 % of family members)
Environment Ontology (ENVO)	Unclassified (35.766 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.234 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.32% β-sheet: 26.55% Coil/Unstructured: 45.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
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SCOP family	SCOP domain	Representative PDB	TM-score
d.204.1.0: Ribosome binding protein Y (YfiA homologue)	d4fyla1	4fyl	0.71
d.204.1.0: Ribosome binding protein Y (YfiA homologue)	d4fyla1	4fyl	0.71
d.204.1.1: Ribosome binding protein Y (YfiA homologue)	d2ywqa1	2ywq	0.69
d.204.1.1: Ribosome binding protein Y (YfiA homologue)	d2ywqa1	2ywq	0.69
c.51.6.1: XCC0632-like	d2i9ia1	2i9i	0.68
c.51.6.2: XCC0632-like	d2iqia1	2iqi	0.68
c.51.6.1: XCC0632-like	d2i9ia1	2i9i	0.68
c.51.6.2: XCC0632-like	d2iqia1	2iqi	0.68
d.204.1.0: Ribosome binding protein Y (YfiA homologue)	d3tqma_	3tqm	0.67
d.204.1.0: Ribosome binding protein Y (YfiA homologue)	d3tqma_	3tqm	0.67

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF00882	Zn_dep_PLPC	13.87
PF17167	Glyco_hydro_36	5.11
PF00210	Ferritin	2.92
PF04366	Ysc84	2.92
PF11154	DUF2934	2.19
PF01594	AI-2E_transport	2.19
PF02687	FtsX	2.19
PF12732	YtxH	1.46
PF00118	Cpn60_TCP1	1.46
PF13527	Acetyltransf_9	1.46
PF06463	Mob_synth_C	0.73
PF07730	HisKA_3	0.73
PF12704	MacB_PCD	0.73
PF02518	HATPase_c	0.73
PF14329	DUF4386	0.73
PF01258	zf-dskA_traR	0.73
PF03965	Penicillinase_R	0.73
PF00528	BPD_transp_1	0.73
PF13620	CarboxypepD_reg	0.73
PF00027	cNMP_binding	0.73
PF13426	PAS_9	0.73
PF13519	VWA_2	0.73
PF06210	DUF1003	0.73
PF13091	PLDc_2	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	2.92
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	2.19
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.46
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.73
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.73
COG2896	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	Coenzyme transport and metabolism [H]	0.73
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	0.73
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.73
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.73
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.73
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.73
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.40 %
Unclassified	root	N/A	14.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.40 %
Unclassified	root	N/A	14.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.40 %
Unclassified	root	N/A	14.60 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	63.50 %
Unclassified	root	N/A	14.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.19 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	24.09 %
Unclassified	root	N/A	14.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.19 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.73 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.60 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	11.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.19 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.73 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.60 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	11.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.19 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.73 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.60 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	11.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.19 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.73 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.60 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	11.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.19 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.73 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918008\|ConsensusfromContig216190	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
2199352025\|deepsgr__Contig_158915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101777076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	2433	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105316858	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300004114\|Ga0062593_100678879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1000	Open in IMG/M
3300004463\|Ga0063356_101391805	Not Available	1032	Open in IMG/M
3300005093\|Ga0062594_100160685	All Organisms → cellular organisms → Bacteria → Acidobacteria	1492	Open in IMG/M
3300005165\|Ga0066869_10009245	All Organisms → cellular organisms → Bacteria → Acidobacteria	1312	Open in IMG/M
3300005288\|Ga0065714_10106917	All Organisms → cellular organisms → Bacteria → Acidobacteria	1541	Open in IMG/M
3300005289\|Ga0065704_10696766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300005289\|Ga0065704_10716986	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300005294\|Ga0065705_10036113	All Organisms → cellular organisms → Bacteria → Acidobacteria	1709	Open in IMG/M
3300005294\|Ga0065705_10053430	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300005295\|Ga0065707_10010207	All Organisms → cellular organisms → Bacteria	2505	Open in IMG/M
3300005330\|Ga0070690_101562968	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005330\|Ga0070690_101637013	Not Available	522	Open in IMG/M
3300005331\|Ga0070670_100236553	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1590	Open in IMG/M
3300005331\|Ga0070670_100251855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1539	Open in IMG/M
3300005331\|Ga0070670_100259147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1516	Open in IMG/M
3300005334\|Ga0068869_101642284	Not Available	573	Open in IMG/M
3300005334\|Ga0068869_101850106	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005335\|Ga0070666_10167210	All Organisms → cellular organisms → Bacteria → Acidobacteria	1539	Open in IMG/M
3300005343\|Ga0070687_100234597	All Organisms → cellular organisms → Bacteria → Acidobacteria	1131	Open in IMG/M
3300005343\|Ga0070687_100396878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M
3300005354\|Ga0070675_100000467	All Organisms → cellular organisms → Bacteria	27614	Open in IMG/M
3300005354\|Ga0070675_100315677	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300005354\|Ga0070675_100632768	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300005438\|Ga0070701_10746841	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300005441\|Ga0070700_100235138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1306	Open in IMG/M
3300005445\|Ga0070708_100762008	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300005457\|Ga0070662_101583800	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300005459\|Ga0068867_101284952	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	675	Open in IMG/M
3300005467\|Ga0070706_100192413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1906	Open in IMG/M
3300005468\|Ga0070707_102153449	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300005471\|Ga0070698_101606136	Not Available	602	Open in IMG/M
3300005471\|Ga0070698_102232108	Not Available	501	Open in IMG/M
3300005518\|Ga0070699_101246159	Not Available	682	Open in IMG/M
3300005518\|Ga0070699_102124377	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005543\|Ga0070672_100370672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1223	Open in IMG/M
3300005544\|Ga0070686_101114399	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300005577\|Ga0068857_102407554	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300005615\|Ga0070702_100258985	All Organisms → cellular organisms → Bacteria → Acidobacteria	1183	Open in IMG/M
3300005719\|Ga0068861_100526190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	1073	Open in IMG/M
3300005840\|Ga0068870_11073755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	578	Open in IMG/M
3300005842\|Ga0068858_100018778	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6467	Open in IMG/M
3300005842\|Ga0068858_100723152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	969	Open in IMG/M
3300005843\|Ga0068860_100262375	All Organisms → cellular organisms → Bacteria → Acidobacteria	1684	Open in IMG/M
3300005843\|Ga0068860_100288352	All Organisms → cellular organisms → Bacteria → Acidobacteria	1606	Open in IMG/M
3300006046\|Ga0066652_101175009	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300006049\|Ga0075417_10623130	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300006055\|Ga0097691_1020985	All Organisms → cellular organisms → Bacteria	2816	Open in IMG/M
3300006058\|Ga0075432_10165102	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300006579\|Ga0074054_11920045	All Organisms → cellular organisms → Bacteria → Acidobacteria	1628	Open in IMG/M
3300006791\|Ga0066653_10458629	All Organisms → cellular organisms → Bacteria → Acidobacteria	649	Open in IMG/M
3300006852\|Ga0075433_10753329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	852	Open in IMG/M
3300006854\|Ga0075425_101270051	All Organisms → cellular organisms → Bacteria → Acidobacteria	835	Open in IMG/M
3300006854\|Ga0075425_101974333	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300006914\|Ga0075436_101040033	All Organisms → cellular organisms → Bacteria → Acidobacteria	615	Open in IMG/M
3300006950\|Ga0075524_10338425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300009029\|Ga0066793_10248291	Not Available	1032	Open in IMG/M
3300009029\|Ga0066793_10621933	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300009092\|Ga0105250_10560009	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300009094\|Ga0111539_10222827	All Organisms → cellular organisms → Bacteria → Acidobacteria	2196	Open in IMG/M
3300009101\|Ga0105247_10476414	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300009147\|Ga0114129_10040104	All Organisms → cellular organisms → Bacteria	6602	Open in IMG/M
3300009147\|Ga0114129_10068374	All Organisms → cellular organisms → Bacteria → Proteobacteria	4953	Open in IMG/M
3300009162\|Ga0075423_10800435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	997	Open in IMG/M
3300009176\|Ga0105242_10282816	All Organisms → cellular organisms → Bacteria → Acidobacteria	1507	Open in IMG/M
3300009176\|Ga0105242_11108298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	806	Open in IMG/M
3300010397\|Ga0134124_10181742	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300010397\|Ga0134124_10953778	All Organisms → cellular organisms → Bacteria → Acidobacteria	867	Open in IMG/M
3300010401\|Ga0134121_10384408	All Organisms → cellular organisms → Bacteria → Acidobacteria	1264	Open in IMG/M
3300010403\|Ga0134123_11605419	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M
3300011444\|Ga0137463_1078140	Not Available	1241	Open in IMG/M
3300012354\|Ga0137366_10192510	All Organisms → cellular organisms → Bacteria → Acidobacteria	1525	Open in IMG/M
3300012488\|Ga0157343_1008942	Not Available	731	Open in IMG/M
3300012957\|Ga0164303_10949176	Not Available	607	Open in IMG/M
3300012958\|Ga0164299_10246652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300012984\|Ga0164309_10826084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300013296\|Ga0157374_12168219	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300014325\|Ga0163163_12078895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	628	Open in IMG/M
3300014326\|Ga0157380_10498577	All Organisms → cellular organisms → Bacteria → Acidobacteria	1182	Open in IMG/M
3300014745\|Ga0157377_10357904	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300015371\|Ga0132258_10205924	All Organisms → cellular organisms → Bacteria → Acidobacteria	4775	Open in IMG/M
3300015371\|Ga0132258_11608390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1640	Open in IMG/M
3300015372\|Ga0132256_101497899	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300015372\|Ga0132256_101885174	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300015373\|Ga0132257_100074172	All Organisms → cellular organisms → Bacteria → Acidobacteria	3858	Open in IMG/M
3300015373\|Ga0132257_100433486	All Organisms → cellular organisms → Bacteria → Acidobacteria	1603	Open in IMG/M
3300015374\|Ga0132255_100449616	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300015374\|Ga0132255_101804012	All Organisms → cellular organisms → Bacteria → Acidobacteria	929	Open in IMG/M
3300015374\|Ga0132255_104231112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300015374\|Ga0132255_104239898	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300018067\|Ga0184611_1008393	All Organisms → cellular organisms → Bacteria → Acidobacteria	2849	Open in IMG/M
3300018072\|Ga0184635_10009770	All Organisms → cellular organisms → Bacteria → Acidobacteria	3308	Open in IMG/M
3300018073\|Ga0184624_10052065	All Organisms → cellular organisms → Bacteria → Acidobacteria	1660	Open in IMG/M
3300018074\|Ga0184640_10449157	Not Available	573	Open in IMG/M
3300018081\|Ga0184625_10086159	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300018482\|Ga0066669_11234086	Not Available	675	Open in IMG/M
3300020005\|Ga0193697_1000759	All Organisms → cellular organisms → Bacteria → Acidobacteria	10748	Open in IMG/M
3300021080\|Ga0210382_10041342	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1780	Open in IMG/M
3300021080\|Ga0210382_10108210	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300025495\|Ga0207932_1039567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1123	Open in IMG/M
3300025553\|Ga0208080_1061069	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300025579\|Ga0207927_1028521	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300025891\|Ga0209585_10354533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300025900\|Ga0207710_10116243	All Organisms → cellular organisms → Bacteria → Proteobacteria	1274	Open in IMG/M
3300025900\|Ga0207710_10347543	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300025901\|Ga0207688_10253369	All Organisms → cellular organisms → Bacteria → Acidobacteria	1067	Open in IMG/M
3300025903\|Ga0207680_10201819	All Organisms → cellular organisms → Bacteria → Acidobacteria	1355	Open in IMG/M
3300025918\|Ga0207662_10499818	Not Available	837	Open in IMG/M
3300025925\|Ga0207650_10226062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1508	Open in IMG/M
3300025926\|Ga0207659_10000086	All Organisms → cellular organisms → Bacteria	55279	Open in IMG/M
3300025940\|Ga0207691_10371692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1221	Open in IMG/M
3300025942\|Ga0207689_11495200	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300025986\|Ga0207658_12105935	Not Available	513	Open in IMG/M
3300026035\|Ga0207703_10013766	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	6304	Open in IMG/M
3300026088\|Ga0207641_10009351	All Organisms → cellular organisms → Bacteria → Proteobacteria	8083	Open in IMG/M
3300027815\|Ga0209726_10017424	All Organisms → cellular organisms → Bacteria	6368	Open in IMG/M
3300028381\|Ga0268264_11012971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	837	Open in IMG/M
3300028802\|Ga0307503_10409669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300031226\|Ga0307497_10727860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300031740\|Ga0307468_100854586	All Organisms → cellular organisms → Bacteria → Acidobacteria	783	Open in IMG/M
3300031908\|Ga0310900_10442424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	997	Open in IMG/M
3300031908\|Ga0310900_10463123	All Organisms → cellular organisms → Bacteria → Acidobacteria	977	Open in IMG/M
3300031944\|Ga0310884_10878227	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300032000\|Ga0310903_10074942	All Organisms → cellular organisms → Bacteria → Acidobacteria	1376	Open in IMG/M
3300032174\|Ga0307470_11227869	Not Available	610	Open in IMG/M
3300032180\|Ga0307471_102586752	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300032211\|Ga0310896_10259928	All Organisms → cellular organisms → Bacteria → Acidobacteria	882	Open in IMG/M
3300033412\|Ga0310810_10175120	All Organisms → cellular organisms → Bacteria	2459	Open in IMG/M
3300033433\|Ga0326726_10008605	All Organisms → cellular organisms → Bacteria → Acidobacteria	9053	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.82%
Host-Associated	Host-Associated	48.18%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	48.18%
Terrestrial	Environmental → Terrestrial	44.53%
Aquatic	Environmental → Aquatic	7.30%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.90%
Sediment	Environmental → Aquatic → Sediment	4.38%
Freshwater	Environmental → Aquatic → Freshwater	2.92%
Peat	Environmental → Terrestrial → Peat	0.73%
Roots	Host-Associated → Plants → Roots	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.87%
Loam	Environmental → Terrestrial → Soil → Loam	13.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.38%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.46%
Lake	Environmental → Aquatic → Freshwater → Lake	0.73%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.73%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.49%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.19%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.46%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.46%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.46%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.73%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.73%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.73%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.30%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.11%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.11%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.38%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.38%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.19%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.19%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.19%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.46%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.46%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.73%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.73%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.73%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025495	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025553	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Bog_all_C_00701580	2140918008	Soil	MKLIQHAAWDRWWEGSAELEVVIEGVSDVRVANEIKRKVRQVCKSTERSGQWSVMVSPSETRGQWDLGVRGPFGRHFASFTERVDQLPELVAEQLRACL
deepsgr_02632690	2199352025	Soil	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL
INPhiseqgaiiFebDRAFT_1017770764	3300000364	Soil	MDLEVVIEGVSDAGVAKEIKRRIREVCRELQHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADCAGHLPDLVAEQLRACX*
INPhiseqgaiiFebDRAFT_1053168582	3300000364	Soil	MDLEVVVEGVSDERVANEIKRKIQQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL*
Ga0062593_1006788792	3300004114	Soil	MDLEVVIEGVTDARVVQEIKRRIREVCRELEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADRAGHLPDLVAEQLRACL*
Ga0063356_1013918051	3300004463	Arabidopsis Thaliana Rhizosphere	MDLEVVFEGVSEARLASEIRRKIRQMCWDTACSGPWSVVMSPSETRAQWDLGVRGPFGRHFASFAERVDRLPELVAEQLRSCL*
Ga0062594_1001606852	3300005093	Soil	MDLEIVVEGVADGRVIGEIKRKIQQVCKETRRSGAWSIIVSPSEMRGQWDLGVRGPFGRHFASFSDPEHIDQLPELVAQRFRAFS*
Ga0066869_100092452	3300005165	Soil	MDLEVVIEGVSDIGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERADQLPELVERQFRAFL*
Ga0065714_101069172	3300005288	Miscanthus Rhizosphere	MDLEVVIEGVSDARVADGIEREVRQVCKDNERPGHWVVALSPSETRGQWDLGVREPFGQHFTSFTDHVDQLPGLVAAQLRKYLSEAMA*
Ga0065704_106967662	3300005289	Switchgrass Rhizosphere	RVWGWLMDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL*
Ga0065704_107169861	3300005289	Switchgrass Rhizosphere	MDLEVVVEGVSDLRVAKEIKRKIQQVCRDTDRSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPELVAE
Ga0065705_100361131	3300005294	Switchgrass Rhizosphere	MDLEVVIEGVSDVGVANEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL*
Ga0065705_100534302	3300005294	Switchgrass Rhizosphere	MDLEVVVEGVSDVRVANEIKRKIQQVCKETRRSGAWSIIVSPSEMRGRWDLGVRGPFGRHFASFSDPEHIDQLPDLVAQRFRAFS*
Ga0065707_100102072	3300005295	Switchgrass Rhizosphere	MDLEVVIEGVSDVGVANEIKRKIHQVCKEMERTGEWSVMVSPSETRGHWDLGVRGPLGRHFASFCDPERVDQLPELVARQFRAFL*
Ga0070690_1015629682	3300005330	Switchgrass Rhizosphere	KMDLEIVVEGVADGRVIGEIKRKIQQVCKETRRSGAWSIIVSPSEMRGQWDLGVRGPFGRHFASFSDPEHIDQLPELVAQRFRAFS*
Ga0070690_1016370131	3300005330	Switchgrass Rhizosphere	MDLEIVIEGVSDARVANEIKRRIREICRQVEHGGEWTVTVSPAETRGQWDLGVRGPFGRRFVSFADRAGRLPDLIAEQLRACL*
Ga0070670_1002365532	3300005331	Switchgrass Rhizosphere	MDLEVVIEGVSDPRVAIGITRQVRQVCKDNERPGHWSLTVCPSETRGQWDLGVRGPFGQHFASFTEHADQLPRLVAAQLRGCL*
Ga0070670_1002518554	3300005331	Switchgrass Rhizosphere	MDLEVVIEGVSDPVVAKGITREARQVCKENQRSGQWILTVCPSETRGQWDLGVRGPFGQRFASFTSHVDQLPGLVAAHLLGCL*
Ga0070670_1002591471	3300005331	Switchgrass Rhizosphere	MDLEVVIEGVSDPVVADGIARQIRQVCKENQRPGQWSLTVCPSETRGQWDLGVRGPFGRHFASFTDHVDQLPGLVAAHLLGCL*
Ga0068869_1016422841	3300005334	Miscanthus Rhizosphere	VDLDVVIEGVSDVHVVKEINRQVQQVCKGSPRSGQWSVLVSPSETRGQWDLGVRGPFVRRFGSFTSHVDQLPGLVAAHLLGCL*
Ga0068869_1018501061	3300005334	Miscanthus Rhizosphere	GRVIGEIKRKIQQVCKETRRSGAWSIIVSPSEMRGQWDLGVRGPFGRHFASFSDPEHIDQLPELVAQRFRAFS*
Ga0070666_101672102	3300005335	Switchgrass Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERSGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL*
Ga0070687_1002345971	3300005343	Switchgrass Rhizosphere	MDLEVVIEGVSDARVAKEIKRRIHEVCREVERGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADRAGHLPDLVAEQLRAWL*
Ga0070687_1003968782	3300005343	Switchgrass Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL*
Ga0070675_10000046717	3300005354	Miscanthus Rhizosphere	MDLEVVIEGVSDPRVAQAIKRRIQEVCREVEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADGAGHLPDLVAEQLRACL*
Ga0070675_1003156771	3300005354	Miscanthus Rhizosphere	MDLEVVIEGVSDPRVAIGITRQVRQVCKDNERPGHWSLTVCPSETRGQWDLGVRGPFGQHFASFTDHADQLPRLVAAQLRGCL*
Ga0070675_1006327681	3300005354	Miscanthus Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFCDPERVDQLPELVARQFRAFL*
Ga0070701_107468412	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEIVIEGVSDARVAQKIKRRIQEICREVEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADRAGHLPDLVAEQLRAWL*
Ga0070700_1002351382	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL*
Ga0070708_1007620082	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEVVVEGVFDVRVENEIKRKIEQVCRDTECSGTWSIMVSPSEIRGQWDLGVRGPFGRHFASFDDPERVDQLPELVARQFRAFR*
Ga0070708_1008249192	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	SQIKQKIRQVYRDAARSGKWSVVMSPSETRGQWDLGVRGPFGRHFASFAERSGRLPDLVAEQLRAFL*
Ga0070662_1015838001	3300005457	Corn Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPEL
Ga0068867_1012849522	3300005459	Miscanthus Rhizosphere	TGKGQSMDLEVVIEGVSDPVVADGIARQIRQVCKENQRPGQWSLTVCPSETRGQWDLGVRGPFGRHFASFTDHVDQLPGLVAAHLLGCL*
Ga0070706_1001924132	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEVVIEGVADVRLVSQIKQKIRRMYRDAGRSGKWRVLMSPSETRGQWDLGVRGPFGRHFASFAERSGRLPDLVAEQLRAFL*
Ga0070707_1021534491	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VDLDVVIEGVSDAGVVEEINWKVQQVCKGSPHSGQWSVLVSPSETRGQWDLGIRGPFGQHFASFTEGVDQLPELVAEQLRACL*
Ga0070698_1016061362	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEVVIEGVSDPVVANGITREVRQVFKENQRPGEWSLTVCPSETRGQWDLSVRGPFGQHFASFTDHVDQLPGLVAAQLRGCL*
Ga0070698_1022321082	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEVVIEGVSDVGVANDIRRRIQKVCKETERSGEWSIMISPSEMRGQWDLGVREPSGRHFVSFPDPERIDQLPALIAVYFRA
Ga0070699_1000784964	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEVVIEGVADVRLVSQIKQKIRRMYRDAGRSGKWSVVMSPSETRGQWDLGVRGPFGRHFASFAERSGRLPDLVAEQLRAFL*
Ga0070699_1012461592	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEVVIEGVFDHVVANGITREARKVCKENQRPGQWSLTVCPSETRGQWDLGVRGPFGQHFASFTDHVDQL
Ga0070699_1021243771	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	GVSDGRVVGEIKRKIQQVCKEMRRSGAWSIIVSPSEMRGQWDLGVRGPFGRHFASFSDPEHIDQLPELVAQRFRAFS*
Ga0070672_1003706721	3300005543	Miscanthus Rhizosphere	MDLEVVIEGVADRVVTEGITREVRQVCKDNVRPGRWILTVCPSESRGQWDLGVRGPLGHHFASFPDHADQLPGLVAGHLRGCLREVGK*
Ga0070686_1011143992	3300005544	Switchgrass Rhizosphere	MDLEIVIEGVSDARVANEIKRRIREICREVERGGEWTVTVSPAETRGQWDLGVRGPFGRRFVSFADRAGRLPDLIAEQLRACL*
Ga0068857_1024075541	3300005577	Corn Rhizosphere	MDLEVVIEGVSDPVVAKGITREARQVCKENQRAGQWILTVCPSETRGQWDLGVRGPFGQRFASFTSHVDQLPGLVAAHLLGCL*
Ga0070702_1002589852	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEVVVEGVSELGVVNEIKRKIQQVCREMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL*
Ga0068861_1005261902	3300005719	Switchgrass Rhizosphere	MDLEVVIEGVADRAVADGITREVRQVFKENQRPGEWSLTVCPSETRGQWDLSVRGPFGQHFASFTDHVDRLPGLVAAQLRGCL*
Ga0068870_110737551	3300005840	Miscanthus Rhizosphere	NATTGKGQSMDLEVVIEGVSDPVVADGIARQIRQVCKENQRPGQWSLTVCPSETRGQWDLGVRGPFGRHFASFTDHVDQLPGLVAAHLLGCL*
Ga0068858_1000187781	3300005842	Switchgrass Rhizosphere	VDLDVVIEGVSDVHVVKEINRKVQQVCKGSPHAGQWSLLVSPSETRGQWDVGIRGPFGEHFASFTERADQLPGLVAEQLRASFDLITSVA*
Ga0068858_1007231522	3300005842	Switchgrass Rhizosphere	MDLEVVIEGVSDPIVAKGITREARQVCKENQRPGQWILTVCPSETRGQWDLGVRGPFVRRFASFTSHVDQLPGLVAAHLLGCL*
Ga0068860_1002623752	3300005843	Switchgrass Rhizosphere	MDLEVVVEGVSELGVVNEIKRKIQQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL*
Ga0068860_1002883522	3300005843	Switchgrass Rhizosphere	VDLDVVIEGVSDVHVLKEINRKVQQVCKGSPHAGRWSLLVSPSETRGQWDVGIRGPFGEHFASFTERADQLPGLVAEQLRASFDLITSVA*
Ga0066652_1011750091	3300006046	Soil	MDLEIVIEGVSDVRVVSEIKRKLQQVCRDTDRSGDWSIIVSPSEMRGHWDLGVRGPFGRHFASFPDPERVDELPELVASRFRAFVSRSPQL
Ga0075417_106231301	3300006049	Populus Rhizosphere	MDLEIVIEGVSDVRVEGEIKRKIQQVCKETRRSGAWSIIVSPSEMRGRWDLGVRGPFGRHFASFSDPEHIDQLPDLVAQRFRAFS*
Ga0097691_10209854	3300006055	Arctic Peat Soil	MRLIQHAAWDRWWEGSAELEVVIEGVSDVRVANEIKRKVRQVCKSTERSGQWSVMVSPSETRGQWDLGVRGPFGRHFASFTERADQLPELVAEQLRACL*
Ga0075432_101651022	3300006058	Populus Rhizosphere	MDLEVVVEGVSDVRVANEIKRKIQQVCRDTDRSGDWSIFVSPSEMRGQWDLGVRGPSGRHFASFPDPERVDQLPELFAHALMDALTPS*
Ga0074054_119200451	3300006579	Soil	MDLEVVIEGVSDVGVVNEIKRKIHQVCKDMERTGEWSVMVSPSEMRGQWDLGVRGALGRHFASFSDPERVDQLPELVARQFRAFL*
Ga0066653_104586292	3300006791	Soil	MDLEIVIEGVSDVRVVSEIKRKLQQVCRDTDRSGDWSIIVSPSEMRGHWDLGVRGPFGRHFASFPDPERVDELPELVASRFRAFVSPSPQLAS*
Ga0075433_107533292	3300006852	Populus Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFCDPERVDQLPELVARRFRGFL*
Ga0075425_1012700512	3300006854	Populus Rhizosphere	MDLEIVVEGVSDARVVSEIKRKIQQVCKQTRCSGAWSIIVSPSEMRGRWDLGVRGPVGRHFASFSDPEHIDQLPELIAQRFRAFS*
Ga0075425_1019743332	3300006854	Populus Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARRFRGFL*
Ga0075436_1010400332	3300006914	Populus Rhizosphere	MDLEIVVEGVSDARVVSEIKRKIQQVCKQTRCSGAWSIIVSPSEMRGRWDLGVRGPVGRHFASFSDPEHI
Ga0075524_103384251	3300006950	Arctic Peat Soil	MTLIQHAAWDRWWEGSAELEFVIEGVSDVRVANEIKRKVRQVCKSTERSGQWSVMVSPSETRGQWDLGVRGPFGRHFASFTERVDQLPELVAEQLRACL*
Ga0066793_102482912	3300009029	Prmafrost Soil	MDLEVVIEGVSDVRVANEIKRKVRQVCKDAERSGQWSVVVSPSETRGQWDLGVRGPFGRHFASFTERVDQLPELVAEQLRACLSLAFGHRASVRLART*
Ga0066793_106219332	3300009029	Prmafrost Soil	MKLIQHAAWDRWWEGSAELEVVIEGVSDVRVANEIKRKVRQVYKSTERSGQWSVMVSPSETRGQWDLGVRGPFGRHFASF
Ga0105250_105600091	3300009092	Switchgrass Rhizosphere	MDLEIVVEGVADGRVIGEIKRKIQQVCKETRRSGAWSIIVSPSEMRGQWDLGVRGPFGRHFASFSDPEHIDQLPELVAQRFR
Ga0111539_102228272	3300009094	Populus Rhizosphere	MKMDLEIVVEGVSDGRVVGEIKRKIQQVCKEMRRSGAWSIIVSPSEMRGQWDLGVRGPFGRHFASFSDPEHIDQLPELVAQRFRAFS*
Ga0105247_104764141	3300009101	Switchgrass Rhizosphere	VDLDVVIEGVSDVHVLKEINRKVQQVCKGSPHAGQWSLLVSPSETRGQWDVGIRGPFGEHFASFTERADQLPGLVAEQLRASFDLITSVA*
Ga0114129_100401043	3300009147	Populus Rhizosphere	MDLEVVIEGVSDVGVANEIKRKIHQVCKEMERTGEWSVMVSPSELRGQWDLGVRGPLGRHFASFRDPERVDQLPELVARQFRAFL*
Ga0114129_100683747	3300009147	Populus Rhizosphere	VDLEVVIEGVSDVRVANEIKRKIQQVCKDTERSGDWSIMVSPSEMRGQWDLGVRGPFGRHFASFADPERVDQLPELVAKQFRAFL*
Ga0075423_108004354	3300009162	Populus Rhizosphere	MDLEVVIEGVTDARVVQEIKRRIREVCRELEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADGAGHLPDLVAEQLRACL*
Ga0105242_102828162	3300009176	Miscanthus Rhizosphere	MDLEVVVEGVSNVRVANEIKRRIQQACRDTDQSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPALVAELFRAFLRPSPQLS*
Ga0105242_111082981	3300009176	Miscanthus Rhizosphere	MDLEVVIEGVSDPVVANGIAREVRQVCKENERPGQWSLTVCPSETRGQWDLGVRGPFGRHFASFTDHVDQLPGLVAAHLRGCL*
Ga0134124_101817422	3300010397	Terrestrial Soil	MDLEVVIEGVSDVGVANEIKRKIQQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL*
Ga0134124_109537782	3300010397	Terrestrial Soil	MDLEIVIEGVSDARVANEIKRRIREICREVEHGGEWTVTVSPAETRGQWDLGVRGPFGRRFVSFADRAGRLPDLIAEQLRACL*
Ga0134121_103844082	3300010401	Terrestrial Soil	MDLEIVIEGVSDARVANEIKRRIREICREVEHGGEWTVTVSPAETRGQWDLGVRGPFGRRFVSFADGAGRLPDLIAEQLRACL*
Ga0134123_116054192	3300010403	Terrestrial Soil	MDLEVVVEGVSELGVVNEIKRKIQQVCREMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL*
Ga0137463_10781402	3300011444	Soil	MDLELEIEGVSDARIVSEIRKKIRQVCKVFKRPGEWSVVVSPSETRGQWDIGVRGPFGRHFASVNDRAEQLPVLVAAQLEACL*
Ga0137366_101925102	3300012354	Vadose Zone Soil	MDFEVVVEGVSDVRVENEIKRKVEPVCRDTGCSGTWSIMVSPSEMRGQWDLGVREPFGRHFASFDDPERVDQLPELVARQFRAFR*
Ga0157343_10089421	3300012488	Arabidopsis Rhizosphere	MDLDVVIEGVSDARVANEIKRRIQEICRDVEHGGEWSVTISPAETRGQWDLGVRGPFGRRFAWFADRAGSLPDLVAEQLRACL*
Ga0164303_109491762	3300012957	Soil	MDLEVVIEGVSDVGVVSEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL*
Ga0164299_102466522	3300012958	Soil	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL*
Ga0164309_108260842	3300012984	Soil	GWLMDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL*
Ga0157374_121682192	3300013296	Miscanthus Rhizosphere	MDLEVVIEGMADRVVADDITREVRQVCKDNERPGRWSLTVCPSETRGQWDLGVRGPFGQHFASFTDPGDQLPGLVAAQLRGCL*
Ga0163163_120788951	3300014325	Switchgrass Rhizosphere	MDLEVVIEGVSDPIVAKGITREARQVCKENQRPGQWILTVCPSETRGQWDLGVRGPFVRRFASFTSHVAQLPGLVAAHLLGCL*
Ga0157380_104985772	3300014326	Switchgrass Rhizosphere	MDLEVVVEGVSELGVVNEIKRKIQQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL*
Ga0157377_103579042	3300014745	Miscanthus Rhizosphere	MDLEIVVEGVADGRVIGEIKRKIQQVCKETRRSGAWSIIVSPSEMRGQWDLGVHGPFGRHFASFSDPEHIDQLPELVAQRFRAFS*
Ga0132258_101653374	3300015371	Arabidopsis Rhizosphere	MLMDLELVIEGVSDVRLAKDIRRAVRRVCKDADRSGEWSALLAPSETRGQWDLGVRGPSGRHFASFTADADCLPVLVAEQLRACF*
Ga0132258_102059244	3300015371	Arabidopsis Rhizosphere	MDLEVVIEGVFDARVENEIKRRIQEVCRDVAHGGEWSVTVSPAETRGQWDLGVRGPFGRRFASFADRAGHLPDLVAEQLRACL*
Ga0132258_116083903	3300015371	Arabidopsis Rhizosphere	MDLEIVIEGVSDARVANEIKRRIREICRHVEHGGEWSVTVSPAETRGQWDLGVRGPFGHRFVSFADRAGRLPDLVAEQLRACL*
Ga0132256_1014978992	3300015372	Arabidopsis Rhizosphere	ASEIKRKIQQVCRDTDQSGDWSIMVSPSEMRGQWDLGARGPLGRHFASFPDPERVDQLPELVAERFRAFL*
Ga0132256_1018851742	3300015372	Arabidopsis Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQL
Ga0132257_1000741727	3300015373	Arabidopsis Rhizosphere	TDARVVQEIKRRIREVCRELEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADRAGHLPDLVAEQLRACL*
Ga0132257_1004334861	3300015373	Arabidopsis Rhizosphere	TSMDLEVVIEGVSDPRVAQAIKRRIREVCREVEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADGAGHLPDLVAEQLRACL*
Ga0132255_1004496163	3300015374	Arabidopsis Rhizosphere	MDLEVIVEGVSDVHVASEIKRKIQQVCRDTDQSGDWSIMVSPSEMRGQWDLGARGPLGRHFASFPDPERVDQLPELVAERFRAFL*
Ga0132255_1018040121	3300015374	Arabidopsis Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRA
Ga0132255_1042311122	3300015374	Arabidopsis Rhizosphere	VGVVNEIKRKIHQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRALL*
Ga0132255_1042398981	3300015374	Arabidopsis Rhizosphere	MDLEVVVEGVSDVRVANEIKRKIQQVCRDTDRSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPELVAERFRAFL*
Ga0132255_1052812021	3300015374	Arabidopsis Rhizosphere	SEIRKKIRQVCRNTGRSGQWTVVMSPSEIRGQWDLGVRGPSGRHLVSFPEREDQLPDLVAEQLRVWL*
Ga0184611_10083932	3300018067	Groundwater Sediment	MDLEVVVEGVSDVRVANEIKRKIQQVCRDTDQSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPALVAERFRAFLRPTPQLS
Ga0184635_100097702	3300018072	Groundwater Sediment	MDLEVVVEGVSDVRVANEIKRKIQQVCRDTDQSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPELVAERFRAFLRPSPQLAS
Ga0184624_100520653	3300018073	Groundwater Sediment	MDLEVVVEGVSDVRVANEIKRKIQQVCRDTDQSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPALVAERFRAFLRPSPQLS
Ga0184640_104491571	3300018074	Groundwater Sediment	MALEGVGEGVSDVRVANEIKRKIQQVCRDTDQSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPALVAERFRAFLRPSPQLS
Ga0184625_100861592	3300018081	Groundwater Sediment	MDLEVVVEGVSDVRVANEIKRKIQQVCRDTDQSGDWSVSVSPSEMRGQWDLGARGPFGRHFASFPDPERVDQLPELVAERFRAFLRPSPQLAS
Ga0066669_112340861	3300018482	Grasslands Soil	MDLEIVIEGVSDVRVVSEIKRKLQQVCRDTDRSGDWSIIVSPSEMRGHWDLGVRGPFGRHFASFPDPERVDELPELVASRFRAFVSRSPQLAS
Ga0193697_10007592	3300020005	Soil	MDLEVVVEGVSDVRVANEIKRKIQQVCRETDQSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPALVAERFRAFLRPSPQLS
Ga0210382_100413421	3300021080	Groundwater Sediment	MDVEVVIEGVSDERVANEIKRKIREVCHDTERSGEWSVLVSPSETRGQWDLGVRGPFGRHFASFTERVDQLPELVAKQLRACL
Ga0210382_101082101	3300021080	Groundwater Sediment	MDLEVVIEGVSDVRLEKEIKQKIRQVYNDTERPGQWSVTVSPSETRGQWDLGVRSPFGSHFASFTDHVDQLPELVAAQLRAYL
Ga0207932_10395673	3300025495	Arctic Peat Soil	MKLIQHAAWDRWWEGSAELEVVIEGVSDVRVANEIKRKVRQVCKSTERSGQWSVMVSPSETRGQWDLGVRGPFGRHFASFTERA
Ga0208080_10610691	3300025553	Arctic Peat Soil	MRLIQHAAWDRWWEGSAELEVVIEGVSDVRVANEIKRKVRQVCKSTERSGQWSVMVSPSETRGQWDLGVRGPFGRHFASFTERADQLPELVAEQLRACL
Ga0207927_10285212	3300025579	Arctic Peat Soil	WRSMSLKRRSCERNEPMKLIQHAAWDRWWEGSAELEVVIEGVSDVRVANEIKRKVRQVCKSTERSGQWSVMVSPSETRGQWDLGVRGPFGRHFASFTERADQLPELVAEQLRACL
Ga0209585_103545331	3300025891	Arctic Peat Soil	MTLIQHAAWDRWWEGSAELEVVIEGVSDVRVANEIKRKVRQVCKSTERSGQWSVMVSPSETRGQWDLGVRGPFGRHFASFTERVDQLPELVAEQLRACL
Ga0207710_101162432	3300025900	Switchgrass Rhizosphere	MDLEVVIEGVSDARVADGIEREVRQVCKDNERPGHWVVALSPSETRGQWDLGVREPFGQHFTSFTDHVDQLPGLVAAQLRKYLSEAMA
Ga0207710_103475432	3300025900	Switchgrass Rhizosphere	VDLDVVIEGVSDVHVLKEINRKVQQVCKGSPHAGQWSLLVSPSETRGQWDVGIRGPFGEHFASFTERADQLPGLVAEQLRASFDLITSVA
Ga0207688_102533692	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MDLEIVVEGVADGRVIGEIKRKIQQVCKETRRSGAWSIIVSPSEMRGQWDLGVRGPFGRHFASFSDPEHIDQLPELVAQRFRAFS
Ga0207680_102018192	3300025903	Switchgrass Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERSGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERVDQLPELVARQFRAFL
Ga0207662_104998182	3300025918	Switchgrass Rhizosphere	MDLEVVVEGVSELGVVNEIKRKIQQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL
Ga0207650_102260622	3300025925	Switchgrass Rhizosphere	MDLEVVIEGVSDPRVAIGITRQVRQVCKDNERPGHWSLTVCPSETRGQWDLGVRGPFGQHFASFTEHADQLPRLVAAQLRGCL
Ga0207659_1000008626	3300025926	Miscanthus Rhizosphere	MDLEVVIEGVSDPRVAQAIKRRIQEVCREVEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADGAGHLPDLVAEQLRACL
Ga0207691_103716921	3300025940	Miscanthus Rhizosphere	MDLEVVIEGVADRVVTEGITREVRQVCKDNVRPGRWILTVCPSESRGQWDLGVRGPLGHHFASFPDHADQLPGLVAGHLRGCLREVGK
Ga0207689_114952001	3300025942	Miscanthus Rhizosphere	GVADGRVIGEIKRKIQQVCKETRRSGAWSIIVSPSEMRGQWDLGVRGPFGRHFASFSDPEHIDQLPELVAQRFRAFS
Ga0207658_121059351	3300025986	Switchgrass Rhizosphere	VDLDVVIEGVSDVHVLKEINRKVQQVCKGSPHAGQWSLLVSPSETRGQWDVGIRGPFGEHFASFTERADQLPGLVAEQLRASFDLITSVV
Ga0207703_100137665	3300026035	Switchgrass Rhizosphere	VDLDVVIEGVSDVHVLKEINRKVQQVCKGSPHAGRWSLLVSPSETRGQWDVGIRGPFGEHFASFTERADQLPGLVAEQLRASFDLITSVA
Ga0207641_100093516	3300026088	Switchgrass Rhizosphere	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFCDPERVDQLPELVARQFRAFL
Ga0209726_100174246	3300027815	Groundwater	MDLEVVIEGVSDLRVMSAIKRKIRQVCRDTKRAGQWSVVVSPSETRGQWDLGVREPFGRHFVSFLEPDHQLPELLAEQLRACL
Ga0268264_110129713	3300028381	Switchgrass Rhizosphere	MDLEVVIEGVSDARVAKEIKRRIHEVCRELERGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADRAGHLPDLVAEQLRACL
Ga0307503_104096691	3300028802	Soil	MDLEVVIEGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFSDPERADQLPELVARQFRAFL
Ga0307497_107278601	3300031226	Soil	GVVNEIKRKIHQVCKKMERTGEWSVMVSPSEMRGQWDLGVREPLGRHFASFSDPERVDQLPELVARQFRAFL
Ga0307468_1008545862	3300031740	Hardwood Forest Soil	NEIKRKIQQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL
Ga0310900_104424241	3300031908	Soil	IEGVSDPRVAQAIKRRIQEVCREVEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADGAGHLPDLVAEQLRACL
Ga0310900_104631231	3300031908	Soil	EGVSDVGVVNEIKRKIHQVCKEMERTGEWSVMVSPSEMRGQWDLGVRGPLGRHFASFCDPERVDQLPELVARRFRGFL
Ga0310884_108782271	3300031944	Soil	MDLEVVIEGVSDPRVAQAIKRRIREVCREVEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADGAGHLPDLVAEQLRACL
Ga0310903_100749425	3300032000	Soil	SDPRVAQAIKRRIREVCREVEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADGAGHLPDLVAEQLRACL
Ga0315281_108055182	3300032163	Sediment	VDLEVTIEGVSDVRAANEIKRKVRRACKGTEPGGEWTVMVSPSETRGQWDLGVRGPSGLHFARFTELAQLPQLVADQLRAGLGSVPA
Ga0307470_112278691	3300032174	Hardwood Forest Soil	MDVEVIVEGVSDLRIANEIERKIQQVCRDTDQSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPGLVAERFRAFLQPNPQLAS
Ga0307471_1025867522	3300032180	Hardwood Forest Soil	MDLEVVVEGVSEVGVVNEIKRKIQQVCKEMERTGEWSVMVSPSETRGQWDLGVRGPLGRHFASFGDPERVDQLPELVARQFRAFL
Ga0310896_102599282	3300032211	Soil	MDLEVVIEGVSDPRVAQAIKRRIQEVCREVEHGGEWSVTVSPSETRGEWDLGVRAPFGRRFASFADGAGHLPDL
Ga0310810_101751203	3300033412	Soil	MDLEVVVEGVSDLRVAKEIKRKIQQVCRDTDRSGDWSIIVSPSEMRGQWDLGVRGPFGRHFASFPDPERVDQLPELVAERFRAFL
Ga0326726_100086056	3300033433	Peat Soil	MDLEVEIEGVTDVSVVKEITRSLRRVFKDAKCPGEWRVVVSPSETRGQWDIGVRGPFGHHFASVNDRAEQLPERVAEQLQACLRSISRCAVGNTPRPRLSLQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056592

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences