Metagenome / Metatranscriptome Family F056365

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056365
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	73 residues
Representative Sequence	DTDRASAQALVDDWSSVAVRERRHLRDVAIAARPSLAGQIDDVFSLEAVVAELAPVLDETLAGIVGEG
Number of Associated Samples	115
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.74 %
% of genes near scaffold ends (potentially truncated)	97.08 %
% of genes from short scaffolds (< 2000 bps)	90.51 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.672 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.058 % of family members)
Environment Ontology (ENVO)	Unclassified (22.628 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.766 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.38% β-sheet: 0.00% Coil/Unstructured: 40.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF01264	Chorismate_synt	10.95
PF00535	Glycos_transf_2	8.03
PF01613	Flavin_Reduct	6.57
PF08448	PAS_4	4.38
PF05685	Uma2	4.38
PF04909	Amidohydro_2	3.65
PF10397	ADSL_C	3.65
PF13279	4HBT_2	2.19
PF01494	FAD_binding_3	2.19
PF00296	Bac_luciferase	2.19
PF07978	NIPSNAP	1.46
PF01425	Amidase	1.46
PF00067	p450	1.46
PF02129	Peptidase_S15	1.46
PF02515	CoA_transf_3	0.73
PF07927	HicA_toxin	0.73
PF02639	DUF188	0.73
PF00254	FKBP_C	0.73
PF07690	MFS_1	0.73
PF08240	ADH_N	0.73
PF13486	Dehalogenase	0.73
PF02668	TauD	0.73
PF03992	ABM	0.73
PF01435	Peptidase_M48	0.73
PF01738	DLH	0.73
PF04138	GtrA	0.73
PF00206	Lyase_1	0.73
PF02627	CMD	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0082	Chorismate synthase	Amino acid transport and metabolism [E]	10.95
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	6.57
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	4.38
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	4.38
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.19
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	2.19
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	2.19
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.19
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.46
COG2124	Cytochrome P450	Defense mechanisms [V]	1.46
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.73
COG1671	Uncharacterized conserved protein YaiI, UPF0178 family	Function unknown [S]	0.73
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.73
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.73
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.73
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.67 %
Unclassified	root	N/A	15.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.67 %
Unclassified	root	N/A	15.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.67 %
Unclassified	root	N/A	15.33 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	24.82 %
Unclassified	root	N/A	15.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.22 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9.49 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	24.82 %
Unclassified	root	N/A	15.33 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	5.84 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.65 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	24.82 %
Unclassified	root	N/A	15.33 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	5.84 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.65 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.46 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.33 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	14.60 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	5.84 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.33 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.60 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	5.84 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002560\|JGI25383J37093_10158235	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300002908\|JGI25382J43887_10522476	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300004157\|Ga0062590_100068167	All Organisms → cellular organisms → Bacteria	2085	Open in IMG/M
3300005166\|Ga0066674_10566158	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005174\|Ga0066680_10641843	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300005174\|Ga0066680_10875509	Not Available	534	Open in IMG/M
3300005332\|Ga0066388_102530078	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300005332\|Ga0066388_105763905	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005343\|Ga0070687_100354300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	948	Open in IMG/M
3300005367\|Ga0070667_102185440	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005445\|Ga0070708_100209252	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
3300005445\|Ga0070708_102098884	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300005446\|Ga0066686_10087869	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300005459\|Ga0068867_102089226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	536	Open in IMG/M
3300005467\|Ga0070706_100645881	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300005540\|Ga0066697_10714618	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	548	Open in IMG/M
3300005545\|Ga0070695_100484615	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300005546\|Ga0070696_100177602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1578	Open in IMG/M
3300005546\|Ga0070696_101079578	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300005556\|Ga0066707_10274257	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300005558\|Ga0066698_10004963	All Organisms → cellular organisms → Bacteria	6660	Open in IMG/M
3300005558\|Ga0066698_10535404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	796	Open in IMG/M
3300005574\|Ga0066694_10029234	All Organisms → cellular organisms → Bacteria	2462	Open in IMG/M
3300005576\|Ga0066708_10834018	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300005598\|Ga0066706_10210253	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300005713\|Ga0066905_101705299	Not Available	579	Open in IMG/M
3300005719\|Ga0068861_101233355	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	724	Open in IMG/M
3300005764\|Ga0066903_100825236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1663	Open in IMG/M
3300006031\|Ga0066651_10503843	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300006903\|Ga0075426_10476960	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	925	Open in IMG/M
3300006904\|Ga0075424_100703991	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1078	Open in IMG/M
3300007076\|Ga0075435_101131067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	685	Open in IMG/M
3300007076\|Ga0075435_101506343	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300009012\|Ga0066710_104217759	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300009038\|Ga0099829_10994177	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	696	Open in IMG/M
3300009089\|Ga0099828_10304995	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300009137\|Ga0066709_100505072	All Organisms → cellular organisms → Bacteria	1704	Open in IMG/M
3300009147\|Ga0114129_10857506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1154	Open in IMG/M
3300009177\|Ga0105248_11263993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	835	Open in IMG/M
3300009444\|Ga0114945_10151958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1327	Open in IMG/M
3300009691\|Ga0114944_1448905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	546	Open in IMG/M
3300009808\|Ga0105071_1031971	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300009816\|Ga0105076_1030455	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300009817\|Ga0105062_1118551	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300009820\|Ga0105085_1076811	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300009821\|Ga0105064_1101319	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300009822\|Ga0105066_1123037	Not Available	583	Open in IMG/M
3300010029\|Ga0105074_1093595	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300010046\|Ga0126384_12240578	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	526	Open in IMG/M
3300010047\|Ga0126382_10350673	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1131	Open in IMG/M
3300010304\|Ga0134088_10486154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300010304\|Ga0134088_10604754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300010362\|Ga0126377_11371238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	780	Open in IMG/M
3300011271\|Ga0137393_10816503	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300012203\|Ga0137399_10561375	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300012203\|Ga0137399_11004207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	702	Open in IMG/M
3300012204\|Ga0137374_10977278	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300012210\|Ga0137378_10066303	All Organisms → cellular organisms → Bacteria → Proteobacteria	3270	Open in IMG/M
3300012211\|Ga0137377_10807137	Not Available	871	Open in IMG/M
3300012349\|Ga0137387_10177838	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300012353\|Ga0137367_10170877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1581	Open in IMG/M
3300012360\|Ga0137375_11041026	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	641	Open in IMG/M
3300012362\|Ga0137361_10245505	Not Available	1630	Open in IMG/M
3300012362\|Ga0137361_10677326	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300012362\|Ga0137361_11150444	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300012582\|Ga0137358_10397188	All Organisms → cellular organisms → Bacteria → Proteobacteria	933	Open in IMG/M
3300012917\|Ga0137395_10355598	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1044	Open in IMG/M
3300012918\|Ga0137396_10903330	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300012923\|Ga0137359_10460645	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300012923\|Ga0137359_11777536	Not Available	503	Open in IMG/M
3300012930\|Ga0137407_12211944	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	525	Open in IMG/M
3300012948\|Ga0126375_11359459	Not Available	600	Open in IMG/M
3300012948\|Ga0126375_11533463	Not Available	571	Open in IMG/M
3300012971\|Ga0126369_13142606	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300012971\|Ga0126369_13401149	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	521	Open in IMG/M
3300012976\|Ga0134076_10000687	All Organisms → cellular organisms → Bacteria	9286	Open in IMG/M
3300014166\|Ga0134079_10428695	Not Available	622	Open in IMG/M
3300014883\|Ga0180086_1011356	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300015264\|Ga0137403_10135204	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2444	Open in IMG/M
3300015358\|Ga0134089_10128680	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	988	Open in IMG/M
3300015358\|Ga0134089_10469373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	547	Open in IMG/M
3300015371\|Ga0132258_10344699	All Organisms → cellular organisms → Bacteria → Proteobacteria	3682	Open in IMG/M
3300015374\|Ga0132255_101656039	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300015374\|Ga0132255_103108697	Not Available	708	Open in IMG/M
3300016341\|Ga0182035_11516285	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300018028\|Ga0184608_10014576	All Organisms → cellular organisms → Bacteria → Proteobacteria	2749	Open in IMG/M
3300018031\|Ga0184634_10327695	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300018074\|Ga0184640_10023025	All Organisms → cellular organisms → Bacteria → Proteobacteria	2399	Open in IMG/M
3300018078\|Ga0184612_10508456	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300022563\|Ga0212128_10071075	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
3300025157\|Ga0209399_10055896	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1623	Open in IMG/M
3300025173\|Ga0209824_10284242	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	571	Open in IMG/M
3300025923\|Ga0207681_10669057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	862	Open in IMG/M
3300025938\|Ga0207704_11391002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300026088\|Ga0207641_10072815	All Organisms → cellular organisms → Bacteria → Proteobacteria	2960	Open in IMG/M
3300026298\|Ga0209236_1302288	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300026325\|Ga0209152_10004292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5284	Open in IMG/M
3300026325\|Ga0209152_10116408	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300026326\|Ga0209801_1191247	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300026335\|Ga0209804_1182172	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	905	Open in IMG/M
3300026377\|Ga0257171_1048030	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	739	Open in IMG/M
3300026540\|Ga0209376_1180965	Not Available	979	Open in IMG/M
3300026540\|Ga0209376_1364214	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300026552\|Ga0209577_10593994	Not Available	670	Open in IMG/M
3300027068\|Ga0209898_1059218	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300027384\|Ga0209854_1066138	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300027577\|Ga0209874_1062115	Not Available	946	Open in IMG/M
3300027903\|Ga0209488_10482731	All Organisms → cellular organisms → Bacteria → Proteobacteria	910	Open in IMG/M
3300027952\|Ga0209889_1101313	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300028589\|Ga0247818_11133735	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	557	Open in IMG/M
3300028608\|Ga0247819_10103237	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1431	Open in IMG/M
3300028792\|Ga0307504_10318300	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
3300031421\|Ga0308194_10147314	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300031544\|Ga0318534_10873025	Not Available	504	Open in IMG/M
3300031546\|Ga0318538_10601300	Not Available	597	Open in IMG/M
3300031547\|Ga0310887_10561836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	695	Open in IMG/M
3300031547\|Ga0310887_11090622	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300031720\|Ga0307469_10854230	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300031720\|Ga0307469_11061561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	759	Open in IMG/M
3300031720\|Ga0307469_12356973	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	519	Open in IMG/M
3300031792\|Ga0318529_10099249	Not Available	1313	Open in IMG/M
3300031819\|Ga0318568_10080349	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
3300031820\|Ga0307473_10986745	Not Available	614	Open in IMG/M
3300031820\|Ga0307473_11552890	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	503	Open in IMG/M
3300031879\|Ga0306919_10238487	Not Available	1365	Open in IMG/M
3300031893\|Ga0318536_10187494	Not Available	1053	Open in IMG/M
3300031913\|Ga0310891_10130112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	801	Open in IMG/M
3300031943\|Ga0310885_10230730	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300032010\|Ga0318569_10071380	Not Available	1536	Open in IMG/M
3300032075\|Ga0310890_10441626	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300032174\|Ga0307470_10376386	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	995	Open in IMG/M
3300032180\|Ga0307471_100845418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1082	Open in IMG/M
3300032205\|Ga0307472_100163448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1645	Open in IMG/M
3300033551\|Ga0247830_10245836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1353	Open in IMG/M
3300033811\|Ga0364924_022025	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300034178\|Ga0364934_0060531	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.05%
Host-Associated	Host-Associated	10.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.75%
Plants	Host-Associated → Plants	10.95%
Aquatic	Environmental → Aquatic	7.30%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.11%
Sediment	Environmental → Aquatic → Sediment	3.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.92%
Floodplain	Environmental → Terrestrial → Floodplain	1.46%
Freshwater	Environmental → Aquatic → Freshwater	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.23%
Loam	Environmental → Terrestrial → Soil → Loam	8.03%
Sand	Environmental → Terrestrial → Soil → Sand	8.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.65%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.19%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.46%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.41%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	8.03%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.65%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	2.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.19%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.46%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.73%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.87%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	8.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.38%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	2.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.46%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.46%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009691	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2	Environmental	Open in IMG/M
3300009808	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025157	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes)	Environmental	Open in IMG/M
3300025173	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25383J37093_101582352	3300002560	Grasslands Soil	DTDRASALTLVDDWSAVAVREHRHLRDVAVAARPSLAGEIDDVFSLDAIVTELAPIVDETLTGIAGEG*
JGI25382J43887_105224761	3300002908	Grasslands Soil	RDTDRASAQALVDDWSTVAVREHRHLRDVAIAAQPSLAGQVDVVFSLEAIVTDLAPVLDETLVGVAGEG*
Ga0062590_1000681673	3300004157	Soil	AHDMDRASALALVEDWSAQAVKERRQLRDVALAARPALTGAIDGVFSLESVVTELAPVLDEVLAEIA*
Ga0066674_105661582	3300005166	Soil	DRASALALVDDWSAAAVKERRHLKDVALAARPSLAGQIDAVFSLEAIVAELAPVLEETLEGVAG*
Ga0066680_106418431	3300005174	Soil	SLQGLVFSERLARLLARDTDRASAQALVDDWSTVAVREHRHLRDVAIAAQPSLAGQVDVVFSLEAIVTDLAPVLDETLVGVAGEG*
Ga0066680_108755091	3300005174	Soil	AQALVDDWSAVAVNERRHLRDVALAARPSLAARIDDVFSLEAIVTDLASVLDETLQSCA*
Ga0066388_1025300781	3300005332	Tropical Forest Soil	FSERLARVIARETDRASAQTLVDDWSAQAIKERRHLKDVAVAARPALARQLDAVFALDAIVAELAPVLEEALAGIPLDA*
Ga0066388_1057639052	3300005332	Tropical Forest Soil	KANVESLRGLIFSERLARVISRETDRASAQALVDDWSARVVQERRHLKDVAIAARPSLAGEVDGVFSLETIVAELAPVLEETLAGIPAGP*
Ga0070687_1003543002	3300005343	Switchgrass Rhizosphere	RASALALVDDWSAVAVKERRHLKDVAVAARPSLAGRIDDVFSFDAVVTELAPVLDETLAGIPADP*
Ga0070667_1021854401	3300005367	Switchgrass Rhizosphere	DRASALALVDDWSAVAVKERRHLKDVAVAARPSLAGRIDDVFSFDAVVTELAPVLDETLAGIPADP*
Ga0070708_1002092524	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LVFSERLARVIAHEMDRASAQALVDDWSAVAVNERRHLRDVALAARPSLAARIDDVFSLEAIVTDLASVLDETLQSCA*
Ga0070708_1020988842	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LVDDWSAVAVTERRHLRDVALAARPELAGQLDEVFSLDAIVHELTPVLDETLAGIPADG*
Ga0066686_100878691	3300005446	Soil	SAQALVDDWSTVAVKEGRHLRDVAIAARPSLAGHIDGVFSLEAVVTELAPVLDETLAGIPG*
Ga0068867_1020892263	3300005459	Miscanthus Rhizosphere	ASALALVEDWSAQAVKERRQLRDVALAARPALTGAIDGVFSLESVVTELAPVLDEVLAEIA*
Ga0070706_1006458811	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ESLQGLVFSERLARVIAHEMDRASAQALVDDWSAVAVNEHRHLRDVALAARPSLAARIDDVFSLEAIVTDLASVLDETLQSCA*
Ga0066697_107146182	3300005540	Soil	ARVIARDTDRASAQALVDDWSAMAVKERRYLKDVAIAARPVLAGQIDDVFSLDAIVTELAPVLEETLAGIAVDG*
Ga0070695_1004846151	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	DRASAQALVDDWSAVAVAEHRHLRDVALAARPGLAGRLDDVFSLEAIVRELTPVLDETLAGITADG*
Ga0070696_1001776021	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	RASAQALVDDWSGAAVRDRRNLKEVARSARPSLAGEIDTVFSLEAVVAELAPVLEETLSGVGGENP*
Ga0070696_1010795782	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	PERMTVNLQALQGLVFSERLARLLAHDMDRASALALVEDWSAQAVKERRQLRDVALAARPALAGAIDGVFSLESVVTELAPVLDEVLAEIA*
Ga0066707_102742573	3300005556	Soil	ASALALVDDWSAAAVKERRHLKDVALAARPSLAGQIDAVFSLEAIVAELAPVLEETLEGVAG*
Ga0066698_100049631	3300005558	Soil	ANLESLQGLVFSERLARLIARDTDRASAQALVDDWSAVAVKERSHLKDVALAARPALAGRIDEVFSLDAVVAELAPVLEETLAGIPGA*
Ga0066698_105354043	3300005558	Soil	SAQALVDDWSTVAVKEGRHLKDVAIAARPSLAGHIDGVFSLEAVVTELAPVLDETLAGIPG*
Ga0066694_100292345	3300005574	Soil	DRASALALVDDWSAAAVRERRHLKDVALAARPSLAGQIDAVFSLEAIVAELAPVLEETLEGVAG*
Ga0066708_108340182	3300005576	Soil	ANLEALQGLVFSERLARVIARDTDRASALALVDDWSAAAVKERRHLKDVALAARPSLAGQIDAVFSLEAIVAELAPVLEETLEGVAG*
Ga0066706_102102532	3300005598	Soil	LVDDWSTAAVRERRHLKDVALAARPALAGQIDDVFSLEAIVTELAPVLDETLAGIPSAG*
Ga0066905_1017052992	3300005713	Tropical Forest Soil	LALVDDWSAQAVKERRQLRDVALAARPALAGAIDGVFSLSSVVTELAPVLDEVLAEIDTDR*
Ga0068861_1012333551	3300005719	Switchgrass Rhizosphere	VIARDTDRASALALVDDWSSVAVKERRPLRDVALAARPELAGAIHGVFSLDAVVAELAPVLDEVLRDVDA*
Ga0066903_1008252363	3300005764	Tropical Forest Soil	KANLEALGGLVFSERLARLMARETDRASAQALVDDWSAAAVQDRRHLKTVALAARPSLGAEIDSVFSLEAVVAELVPVLDETLSGVGGENP*
Ga0066651_105038432	3300006031	Soil	ESLQGLVFSERLARRLSRDTDRASAQALVDDWSAIAVKERRHLKDVAVAARPSLAGQIDDVFSLDAIVGELAPVLEETLAGIAEG*
Ga0075426_104769602	3300006903	Populus Rhizosphere	DRASAQALVDDWSAAAVRDCRHLRAVALAERPSLGAEIDSVFSLEAVVAELAPVLDETLSGVGGENP*
Ga0075424_1007039911	3300006904	Populus Rhizosphere	SAQALVDDWSGVAVRDRRNLKEVARAARPALAGEIDTVFSLETVVAELAPVLEETLSGVGGENP*
Ga0075435_1011310672	3300007076	Populus Rhizosphere	ALALVDDWSAVAVTERRHLKDVAVAARPSLARHIDDVFSFEAVVAELAPVLDETLEGIPAGA*
Ga0075435_1015063432	3300007076	Populus Rhizosphere	SRDTDRASAQALVDDWSAVAVKERKHLKDVAIAARPSLAGQIDDVFSLDAIVGELAPVLEETLAGIAEG*
Ga0066710_1042177591	3300009012	Grasslands Soil	LTLVDDWSAVAVREHRHLRDVAVAARPSLAGEIDDVFSLEAIVTELAPVVDETLAGIAGE
Ga0099829_109941772	3300009038	Vadose Zone Soil	ADRMKANLESLQGLVFSERLARLVARDTDRASALTLVDDWSSVAVRERRHLRDVAIAARPLLAGEIDDVFSLEAVVAELAPVLDETLTGIPGEG*
Ga0099828_103049952	3300009089	Vadose Zone Soil	VFSERLARVIARDTDRASAQALVDDWSSVAVRERRHLRDVAIAARPLLAGQIDDVFSLDALVTELAPIVDETLAGIAGEG*
Ga0066709_1005050721	3300009137	Grasslands Soil	KANLESLQGLVFSERLARLIARDTDRASAQALVDDWSAVAVKERSHLKDVALAARPALAGRIDEVFSLDAVVAELAPVLEETLAGIPGA*
Ga0114129_108575062	3300009147	Populus Rhizosphere	VLGREMDRASAQALVDDWSSLAVKDRRHLKDVVLAARPSLAADIDDVFSLDALVKELAPVLDETLAGVPADR*
Ga0105248_112639931	3300009177	Switchgrass Rhizosphere	ASALALVDDWSAVAVKERRHLKDVAVAARPSLAGRIDDVFSFDAVVTELAPVLDETLAGIPADP*
Ga0114945_101519582	3300009444	Thermal Springs	LDRASALALVDDWCATAINEGRHLKDVATAARPSLSGQLDDVFSSKALVAELVPLLDEELADLERTRA*
Ga0114944_14489051	3300009691	Thermal Springs	LDRASALALVDDWCATAINEGRHLKDVATAARPSLSGQLDDVFSSKALVAELVPLVDEELAEIERIRA*
Ga0105071_10319711	3300009808	Groundwater Sand	IARDTDRASAQALVDDWSSVAVRERRHLRDVAIAARPSLAGQIDDVFSLEAVVAELASVLDETLAGIAGEG*
Ga0105076_10304552	3300009816	Groundwater Sand	LVFSERLARLLARDTDRASALALVDEWCAVAVKEHRHLRDVAIAARPSLAGQIDDVFSLEAIVIDLAPVLDEVLTEVAGDA*
Ga0105062_11185511	3300009817	Groundwater Sand	QGLVFSERLARLLARDTDRASALALVDDWCAVAVKERRHLRDVAIAARPSLAGQIDDVFSLEAVVAELAPVLDETLAGIAGEG*
Ga0105085_10768112	3300009820	Groundwater Sand	VFSERLARVIARDTDRASAQALVDDWSSVAVRERRHLRDVAIAARPSLAGQIDDVFSLEAVVAELASVLDETLAGIAGEG*
Ga0105064_11013191	3300009821	Groundwater Sand	KHMDRATALSLVDDWCAAAVTEHRHLKEVAAGARPALAAHLVEVFSLKAIVAELAPVLQEELGALEEARG*
Ga0105066_11230371	3300009822	Groundwater Sand	VRATALSLVDDWSAVAVREHRHLRDVAVAARPSLAGEIDDVFSLEAIVAELAPVLDETLAGVAGEV*
Ga0105074_10935951	3300010029	Groundwater Sand	DDWCAVAVKEHRHLRDVAIAARPSLAGQIDDVFSLEAIVTELAPTLEEALAEIENPAR*
Ga0126384_122405781	3300010046	Tropical Forest Soil	KANIESLQGLVFSERLARLLTRDLDRAEALALVDDWCAAAVAERRHLREIALAARPSLAGPLDDVFSLEAIARDLAPVLAETLADIESGP*
Ga0126382_103506732	3300010047	Tropical Forest Soil	RETDRASAQALVDDWSAAAVRDCRHLKAVALAARPSLGAEIDSVFSLEAVVAELAPVLEETLSGVGGENP*
Ga0134088_104861542	3300010304	Grasslands Soil	LQSLVFSERLARVMARDLDRSSAQALVDDWSTVAVKEGRHLRDVAIAARPSLAGHIDGVFSLEAVVTELAPVLDETLVGIPG*
Ga0134088_106047541	3300010304	Grasslands Soil	NLESLQGLVFSERLARLVARDTDRASALTLVDDWSAVAVREHRHLRDVAVAARPSLAREIDDVFSLEAIVTELAPVVDETLAGIAGEG*
Ga0126377_113712381	3300010362	Tropical Forest Soil	RLLARETDRASAQALVDDWSGVAVRDRRNLKEVARAARPSLAGEIDTVFSLEAIVAELAPVLEETLSGVGGENP*
Ga0137393_108165032	3300011271	Vadose Zone Soil	FSERLARLLAHDTDRASALTLVDDWSAVAVREHRHLRDVAVAARPSLAGEIDDVFSLDALVIELAPIVDETLTGIAGEG*
Ga0137399_105613751	3300012203	Vadose Zone Soil	TDRASAQALVDDWSAVAVKERRHLKDVAIAARPSLAGQIDDVFSLDAIVGELAPVLEETLAGIAEG*
Ga0137399_110042071	3300012203	Vadose Zone Soil	ARELDRASALALVDDWSTVAVKERRHLRDVAIAARPSLAGHIDGVFSLEAIVAELAPVMDETLAGIASEG*
Ga0137374_109772782	3300012204	Vadose Zone Soil	ALMLVDDWSAVAVREHRHLRDVAVAARPSLTGQIDDVFSLAAIVTELAPIVDETLTGIAGEG*
Ga0137378_100663033	3300012210	Vadose Zone Soil	VNAERMKANLESLQGLVFSERLARRLSRDTDRASAQGLVDDWSAVAVKERRHLKGVAIAARPSLAGQIDDVFSLDAIVGELAPVLEETLAGIAEG*
Ga0137377_108071372	3300012211	Vadose Zone Soil	RETDRASALALVDDWSAVAVKERRHLKDVAVAARPSLAGHIDDVFSLEAVVAELVPVLDETLAGLPPDA*
Ga0137387_101778381	3300012349	Vadose Zone Soil	ALTLVDDWSAVAVREHRHLRDVAVAARPSLAGQIDDVFSLDAIVTELAPIVDETLTGIAGEG*
Ga0137367_101708772	3300012353	Vadose Zone Soil	MKANLESLQGLVFSERLARLVARDTDRASALMLVDDWSAVAVREHRHLRDVAVAARPSLTGQIDDVFSLAAIVTELAPIVDETLTGIAGEG*
Ga0137375_110410261	3300012360	Vadose Zone Soil	NLESLQGLVFSERLARLVARDTDRASALMLVDDWSAVAVREHRHLRDVAVAARPSLTGQIDDVFSLDAIVTELAPIVDETLTGIAGEG*
Ga0137361_102455054	3300012362	Vadose Zone Soil	VDDWSTVAVAERRHLRDVALDASPALASQLDEVFSLEAIVRELTPVLDETLAGVPADG*
Ga0137361_106773262	3300012362	Vadose Zone Soil	GLVFSERLARLVARDTDRASAQALVGDWSSVAVRERRHLRDVASAARPSLAGQIDDVFSLEAVVAELAPVLDETLAGIPGAG*
Ga0137361_111504441	3300012362	Vadose Zone Soil	TDRASALALVDDWSAVAVREHRHLRDVAVAARPSLAGQIDDVFSLDALVTELAPVVDEALTGIAG*
Ga0137358_103971881	3300012582	Vadose Zone Soil	NLEALQGLVFSERLARLIARDTDRANAQALVDGWSLVAVKERRHLKDVAIAARPALAGQIDDVFSLDAIVTELAPVLEETLAGVAVDS*
Ga0137395_103555981	3300012917	Vadose Zone Soil	LVDDWSAVALKERRHLRDVAIGAQPSLAGHIDDVFSLDAIATELTPILDETLAGIPSDASRL*
Ga0137396_109033301	3300012918	Vadose Zone Soil	ALHGLVFSERLARVVARDTHRASALALVDDWSAVAVRERRQLRDVALAARPSLAGQIDDVFSLDAVVAELVPVLDETLEGVPG*
Ga0137359_104606451	3300012923	Vadose Zone Soil	RLARLIARDTDRANAQALVDGWSLVAVKERRHLKDVAIAARPALAGQIDDVFSLDAIVTELAPVLEETLAGVAVDS*
Ga0137359_117775362	3300012923	Vadose Zone Soil	ARAQSLVDDWSAVALKERRHLQDVAIGAQPSLAGHIDDVFSLDAIATELAPILGETLAGIPSDASRL*
Ga0137407_122119442	3300012930	Vadose Zone Soil	ERLARVIARDTDRASALALVDDWSAAAVKERRHLKDVALAARPSLAGQIDDVFSLEAIVAELAPVLEETLEGVAG*
Ga0126375_101532703	3300012948	Tropical Forest Soil	WSAAAVRDCRHLKAVALAARPSLGVEIDTVFSLEAVVAELAPVLEETLSGVGGEKP*
Ga0126375_113594592	3300012948	Tropical Forest Soil	ARDTDRASAQALVDDWAAVAVRERRHLKDVALAARPALAGQIDEVFSLEAIVRELAPVLEETLATIAGG*
Ga0126375_115334631	3300012948	Tropical Forest Soil	ASALALVDDWSALAVKDRRQLKDVALAAKPALAGQIDEVFSLDALVAELGPVLEETLTGITTE*
Ga0126369_131426062	3300012971	Tropical Forest Soil	LARLIAGNTDRAGARALVDDWSAVAVTERRHLRDVVLAARPALAGQLDEVFSVEAIVRELTPVLDETLAGIAAGD*
Ga0126369_134011492	3300012971	Tropical Forest Soil	ARDTDRASAQALVDDWSALAVKERRQLKDVALAAKPALAGPIDEVFSLDALVAELAPVLEETLAGIPTE*
Ga0134076_100006871	3300012976	Grasslands Soil	LQGLVFSERLARLIARDTDRASAQALVDDWSAVAVKERSHLKDVALAARPALAGRIDEVFSLDAVVAELAPVLEETLAGIPGA*
Ga0134079_104286951	3300014166	Grasslands Soil	RRLSRDTDRASAQALVDDWSAIAVKERRHLKDVAIAARPSLAGQIDDVFSLDAIVGELAPVLEETLAGIAEG*
Ga0180086_10113561	3300014883	Soil	QGLVFSERLARVIARDTDRASALALVDDWSALAVTERRNLRDVALAARPDLAGQLDEVFSLEAIVRDLTRVLDETLAGITGDG*
Ga0137403_101352043	3300015264	Vadose Zone Soil	LVDDWSAVAVKTRRHLKDVAIAARPALAGQIDDVFSLDAIVTELAPVLDETLAGVPGDG*
Ga0134089_101286801	3300015358	Grasslands Soil	ASAQALVDDWSTVAVQDRRHLKHVALAARPSLAGGIDTVFSLEAIVAELASLLDETLSGVGGENP*
Ga0134089_104693731	3300015358	Grasslands Soil	RDTDRASAQALVDDWSAVAVKERRHLKDVAVAARPALAGQIDDVFSLDAIVTELAPVLEETLAGVAVDS*
Ga0132258_103446991	3300015371	Arabidopsis Rhizosphere	RATAQALVDDWSAVAVAEHRHLRDVALAARPELAHRLDEVFSLEAIVRELRPVLEETLAGITADG*
Ga0132255_1016560392	3300015374	Arabidopsis Rhizosphere	ARLIARDTDRATALALVDDWSTVAVREHRHLRDVALAARPALAEQIDAVFSLETMVSELGPVLDEALAALNLDA*
Ga0132255_1031086971	3300015374	Arabidopsis Rhizosphere	DTDRATAQALVDDWSAVAVAEHRHLRDVALAARPELAHRLDEVFSLEAIVRELRPVLEETLAGITADG*
Ga0182035_115162851	3300016341	Soil	RVIARETDRASAQALVDDWSARVVKERLHLKDVATAARPSLASEIAGVFSLETIVTELAPVLEETLAGIPAGA
Ga0184608_100145763	3300018028	Groundwater Sediment	ASALTIVDDWAAVPVREHRHLRDVAVAARPSLAGQIDDVFSLEAVVAELAPVLDETLAGIAGEG
Ga0184634_103276951	3300018031	Groundwater Sediment	DTDRASAQALVDDWSSVAVRERRHLRDVAIAARPSLAGQIDDVFSLEAVVAELAPVLDETLAGIVGEG
Ga0184640_100230251	3300018074	Groundwater Sediment	LARLVARDTDRASAQALVDDWSSVAVRERRHLRDVAIAARPSLAGPIDDVFSLEAVVAELAPVLDETLAGIVGEG
Ga0184612_105084562	3300018078	Groundwater Sediment	ANLESLQGLVFSERLARVIARDTDRASALALVDDWCAVAVKEHRHLRDVAIAARPSLAGQIDDVFSLEAVVTELAPVLDEVLAEVAGDA
Ga0212128_100710753	3300022563	Thermal Springs	FSERLARLLARELDRASALALVDDWCATAINEGRHLKDVATAARPSLSGQLDDVFSSKALVAELVPLLDEELADLERTRA
Ga0209399_100558961	3300025157	Thermal Springs	RLLAGELDRASALALVDDWCATAINEGRHLKDVATAARPSLSGQLDDVFSSKALVAELVPLLDEELADLERTRA
Ga0209824_102842421	3300025173	Wastewater	LEALQGLVFSERLARVIARDTDRASALALVDDWSAVAVSERRHLRDVALTARPELAGQLDEVFSLDAIVRELMPVLDETLSGIPAEG
Ga0207681_106690572	3300025923	Switchgrass Rhizosphere	LVFSERLARVIARETDRASALALVDDWSAVAVKERRHLKDVAVAARPSLAGRIDDVFSFDAVVTELAPVLDETLAGIPADP
Ga0207704_113910021	3300025938	Miscanthus Rhizosphere	NPDRMTANLQALQGLVFSERLARLLARDMDRASALALVEDWSAQAVKERRQLRDVALAARPVLAGAIDGVFSLESVVTELAPVLDEVLAEIA
Ga0207641_100728154	3300026088	Switchgrass Rhizosphere	MKANLEALQGLVFSERLARVIARDTDRASALALVDDWSSVAVKERRPLRDVALAARPELAGAIHGVFSLDAVVAELAPVLDEVVRDVDA
Ga0209236_13022881	3300026298	Grasslands Soil	QALVDDWSSVAVRDRRHLKHVALAARPSLAGGIDTVFSLDAIVAELASLLDETLSGVGGENP
Ga0209152_100042921	3300026325	Soil	NLESLHGLVFSERLARAIAHEMDRASALALVDDWSAVAVSERRHLRDVALAARPSLASRIDDVFSFEAIVTDLASVLDETLQSCA
Ga0209152_101164082	3300026325	Soil	DTDRASAQALVDDWSAAAVRERRHLKDVALAARPALAGQIDDVFSLEAIVTELAPVLDETLAGIPSAG
Ga0209801_11912472	3300026326	Soil	NLEALQGLVFSERLARVIARDTDRASALALVDDWSAAAVKERRHLKDVALAARPSLAGQIDDVFSLEAIVAELAPVLEETLEGVAG
Ga0209804_11821721	3300026335	Soil	SALALVDDWSAVAVSERRHLRDVALAARPSLAARIDDVFSFEAIVTDLASVLDETLQSCA
Ga0257171_10480301	3300026377	Soil	LVDDWSAVALKERRHLKDVAIAARPSLAGQIDDVFSLEAIVAELAPVLDETLAGIAGDG
Ga0209376_11809652	3300026540	Soil	RVIAHEMDRASALALVDDWSAVAVSERRHLRDVALAARPSLAARIDDVFSFEAIVTDLASVLDETLQSCA
Ga0209376_13642142	3300026540	Soil	VIARDTDRASALALVDDWSAAAVKERRHLKDVALAARPSLAGQIDAVFSLEAIVAELAPVLEETLEGVAG
Ga0209577_105939942	3300026552	Soil	ANLESLQGLVFSERLARVIAHEMDRARAQALVDDWSAVAVNERRHLRDVALAARPSLAARIDDVFSLEAIVTDLASVLDETLQSCA
Ga0209898_10592181	3300027068	Groundwater Sand	SAQALVDDWSAVVVKERRHLKEVALAARPTLAGRIDDVFSLESVVVELAPVLDETLAGVA
Ga0209854_10661382	3300027384	Groundwater Sand	IARDTDRASAQALVDDWSAVVVKERRHLKEVALAARPTLAGRIDDVFSLESVVVELAPVLDETLAGVAG
Ga0209874_10621151	3300027577	Groundwater Sand	LARDTDRATAQALVDDWSTVAVGEHRHLRDVAIAARPSLAERINDVFSLEAIVAELAPVLDETLAGVAGEV
Ga0209488_104827311	3300027903	Vadose Zone Soil	QGLVFSERLARVIGRGTDRASALALVDDWSALALRDRRHLKDVAIAARPSLAGQIDDVFSLEAIVTELAPVLDETLAAIPGD
Ga0209889_11013132	3300027952	Groundwater Sand	AMQGLVFSERLARVIARDTDRASAQALVDDWSAVVVKERRHLKEVALAARPTLAGRIDDVFSLESVVVELAPVLDETLAGVAG
Ga0247818_111337351	3300028589	Soil	ARLIARETDRASAQALVDDWSGVAVRDRRNLKEVARSARPSLAGEIDTVFSLETVVAELAPVLEETLSGVGGESP
Ga0247819_101032371	3300028608	Soil	MKANLEALQGLVFSERLARVVARDLDRTSALALVDDWSTVAVREGRQLRDVALAAKPELAGAIDDVFSLEAVVTELAPVLSEVLAEVND
Ga0307504_103183002	3300028792	Soil	ALVDDWSALAVTERRHLRDVALAARPELAGQLDEVFSLEAIVRDLTPVLDETLAGIPGDG
Ga0308194_101473141	3300031421	Soil	LALVDDWSSAAVRDRRHLRDVALAARPSLAGRIDNVFSLEAIVTELAPVLDEVLAEVAG
Ga0318534_108730252	3300031544	Soil	LQMQALVDDWSARVVKERLHLKDVATAARPSQASEIAGVFSLETIVTELGPVLEETLAGIPAGA
Ga0318538_106013001	3300031546	Soil	SERLARVIARDADRASAQALVDDWSTEAIKERRHLKDVAVAARPALAGQIDDVFSFDAIVAELAPVFEEALAGVPTE
Ga0310887_105618362	3300031547	Soil	LARLIARETDRASALALVDDWSAVAVHERRHLKDVAVAARPSLAGHIDDVFSLEAIVAELSPVLDETLAGIPADA
Ga0310887_110906221	3300031547	Soil	ARDLDRTSALALVDDWSTVAVREGRQLRDVALAAKPELAGAIDDVFSLEAVVTELAPVLSEVLAEVND
Ga0307469_108542301	3300031720	Hardwood Forest Soil	RLARLVARDTDRASALTLVDDWSAVAVREHRHLRDVAVAARPSLAGQIDDVFSLDAIVTELAPIVDETLTGIAGEG
Ga0307469_110615612	3300031720	Hardwood Forest Soil	LARRLARDMDRAGALALVDDWSAQAVKERRQLRDVALAARPALAGTIDGVFSLESVVLELAPVLDEVLAEIAADR
Ga0307469_123569731	3300031720	Hardwood Forest Soil	MKANLEALGGLVFSERLARLIAFDTDRASAQALVDDWSAAAVRDRRHLREVALAARPSMAAEIEAVFSLETIVAELGPVLDETLSGVGGENP
Ga0318529_100992491	3300031792	Soil	SERLARVIARETDRASAQALVDDWSARVVKERLHLKDVATAARPSQASEIAGVFSLETIVTELGPVLEETLAGIPAGA
Ga0318568_100803493	3300031819	Soil	RLARVIARETDRAGAQALVDDWSARVVKERLHLKDVATAARPSLASEIAGVFSLETIVTELAPVLEETLAGIPAGA
Ga0307473_109867451	3300031820	Hardwood Forest Soil	ARDTDRASALALVDDWSALAVKERRHLKDVALAARPALAGRIDDVFSLDAIVAELAPVLEETLAGIAVDG
Ga0307473_115528902	3300031820	Hardwood Forest Soil	VFSERLARLIARETDRASAQALVDDWSSTAVRERRHLKPVALAARPSLAGEIETAFSLEAVVAELGPVLDETLSGVGGENP
Ga0306919_102384872	3300031879	Soil	IARETDRASAQALVDDWSARVVKERLHLKDVATAARPSLASEIAGVFSLETIVTELAPVLEETLAGIPAGA
Ga0318536_101874942	3300031893	Soil	LEALQGLVFSERLARVIARDADRASAQALVDDWSTEAIKERRHLKDVAVAARPALAGQIDDVFSFDAIVAELAPVFEEALAGVPTE
Ga0310891_101301121	3300031913	Soil	ALQGLVFSERLARLIARETDRASALALVDDWSAVAVHERRHLKDVAVAARPSLAGHIDDVFSLEAIVAELSPVLDETLAGIPADA
Ga0310885_102307302	3300031943	Soil	RVLAREMDRASAQALVDDWSSLAVKDRRHLKDVALAARPSLAAHIEDVFSLDALVKELAPVLDETLAGVPTEA
Ga0318569_100713803	3300032010	Soil	AQALVDDWSARVVKERLHLKDVATAARPSLASEIAGVFSLETIVTELAPVLEETLAGIPAGA
Ga0310890_104416261	3300032075	Soil	LARVVAREMDRAAAQALVDDWSSLAVKDRRHLKDVALAARPSLAAHIEDVFSLDALVKELAPVLDETLAGVPTEA
Ga0307470_103763861	3300032174	Hardwood Forest Soil	ERLARLIARDTDRASAQALVDDWSAAAVRDRRHLREVALAARPSMAAEIDTVFSLETVVAELGPVLDETLSGIGGENP
Ga0307471_1008454182	3300032180	Hardwood Forest Soil	LIARESDRASALALVDDWSAVAVKERRHLKDVAVAARPSLAGHIDDVFSFEAVIAELAPVLDETLEGIPAGA
Ga0307472_1001634484	3300032205	Hardwood Forest Soil	LESLQGLVFSERLARRLSRDTDRASAQALVDDWSAVAVKERRHLKDVAIAARPSLTGQIDDVFSLDAIVGELAPVLEETLAGIAEG
Ga0247830_102458361	3300033551	Soil	AVVDDWSAVAVTERRHLRDIALAARPELTGQLDEVFSLEAIIGELRPVLDETLAGITADAGDDESPFNKAGQA
Ga0364924_022025_1069_1263	3300033811	Sediment	ASAQALVDDWSSVAVRERRHLRDVAIAARPSLAGPIDDVFSLEAVVAELAPVLDETLAGIVGEG
Ga0364934_0060531_1182_1403	3300034178	Sediment	RLVARDTDRASALTLVDDWSSVAVRERRHLRDVAIAARPSLAGQIDDVFSLEAVVAELAPVLDETLAGIVGEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056365

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences