Basic Information | |
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Family ID | F056128 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 138 |
Average Sequence Length | 37 residues |
Representative Sequence | EVEHKQGQISQQEYEKTKAALDQTLQRALKRESQKA |
Number of Associated Samples | 126 |
Number of Associated Scaffolds | 138 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 97.83 % |
% of genes from short scaffolds (< 2000 bps) | 92.03 % |
Associated GOLD sequencing projects | 121 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.51 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (83.333 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.043 % of family members) |
Environment Ontology (ENVO) | Unclassified (26.087 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (46.377 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 39.06% β-sheet: 0.00% Coil/Unstructured: 60.94% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Watersheds Peatland Bog Peatland Freshwater Sediment Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Agricultural Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Rice Paddy Soil Tropical Peatland Thawing Permafrost Palsa Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Fen Palsa Peat Peat Soil Plant Litter Termite Gut Arabidopsis Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12635J15846_106486731 | 3300001593 | Forest Soil | QLEVDRQQGNISQQEYDKHRAALDQTLERALKREAQKA* |
Ga0066675_113534511 | 3300005187 | Soil | KDEMFQLEVEHKQGLMSQQEYEQARAALDQTLARAIRRAALK* |
Ga0065715_104191922 | 3300005293 | Miscanthus Rhizosphere | DELFQLEVEHKQGDISQQEYERARAALEQTLERALKRSAVK* |
Ga0070713_1002130904 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | FELEVEHKQGRISQEEYEKTKAALDQTLQRALSRESQKA* |
Ga0070711_1019536621 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | FQLEVERQQGSITQQEYEKHKAALDQTLQRAISRTAQRV* |
Ga0066686_104727872 | 3300005446 | Soil | LEVEHKQGHISQQEYEKAKAALDQTLERALKRNAARTSA* |
Ga0070735_101351152 | 3300005534 | Surface Soil | FELEVEHKQGRISQQEYEQTKAALDQTLQRALKRENQKA* |
Ga0070732_101413393 | 3300005542 | Surface Soil | LEVEHKQGKITQQEYEKAKAALDGTLERAIKRESQKV* |
Ga0070732_103996752 | 3300005542 | Surface Soil | LEVEHKQGRISQQEYEKTKSALDQTLQRALKREAQRT* |
Ga0066693_101301561 | 3300005566 | Soil | EHKQGQISQQEYEKTKAALDQTLQRALKRESQKA* |
Ga0070702_1011644671 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | FQLEIERQQGQISQQEYETQKAALDQTLKRALARTARNS* |
Ga0068863_1000343266 | 3300005841 | Switchgrass Rhizosphere | LFQLEMEHKQGSISQEEYAKAKTALDQTLERALKRKPMA* |
Ga0075275_10048263 | 3300005892 | Rice Paddy Soil | LEIERQQGAISQEEYEKHKSALDQTLQRALSRAGKG* |
Ga0075024_1004873572 | 3300006047 | Watersheds | EHKQGKITQQEYEKAKAALDGTLERAIKRDAQNV* |
Ga0075026_1005281462 | 3300006057 | Watersheds | EVEHKQGSISHQEYERARAALDQTLERALKRAAVK* |
Ga0075017_1004225841 | 3300006059 | Watersheds | HKQGRISQQEYEKTKSALDQTLQRALKREAAKQV* |
Ga0075017_1005554911 | 3300006059 | Watersheds | EMFQLELERRTGKITQSEYEKTKAALDQTLDRALKRQG* |
Ga0070715_100161801 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | EVEHKQGGISQEEYDRARAALDQTLERALKRTASK* |
Ga0070712_1015590591 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | EVEHKQGKITQQEYEKAKAALDATLERAIKRESQKV* |
Ga0079222_116494441 | 3300006755 | Agricultural Soil | DELFQLEVEHKQGSISQQEYEQARAALDQTLDRALKRAVK* |
Ga0099829_107324702 | 3300009038 | Vadose Zone Soil | QLEVEHTQGQITDQEYAKTKSALDQTLARAIKRSR* |
Ga0099828_114226483 | 3300009089 | Vadose Zone Soil | FQLEVDRKQGNISPQEYEKHRAALEQTLERALKREAQKT* |
Ga0066709_1004078323 | 3300009137 | Grasslands Soil | QLEVERKQGNISPQEYEKHRAALDQTLERALKREAQKA* |
Ga0066709_1019270431 | 3300009137 | Grasslands Soil | LEVEHKQGRISQQEYEKARAALDQTLERAIKRESQKTK* |
Ga0111538_123430331 | 3300009156 | Populus Rhizosphere | ELEVERKQGRLSQEEYDKARSALDHTLERALKRQS* |
Ga0105241_124852131 | 3300009174 | Corn Rhizosphere | EVEHKQGQISQQEYEKTKAALDQTLQRALKRESQKA* |
Ga0116225_13092151 | 3300009524 | Peatlands Soil | QLEVEHKQGRISQQEYEKTKAALDQTLQRALKRATQKT* |
Ga0116105_10604142 | 3300009624 | Peatland | EVERKQGQISQAEYDTAKSALDQTLERALKREAQKA* |
Ga0116112_11145112 | 3300009636 | Peatland | EVERKQGQISQADYEKAKSALDQTLDRALKREAQKA* |
Ga0116224_102268802 | 3300009683 | Peatlands Soil | FHLEVERQQGRISHQEYETAKSALDQTLQRALKREAQKA* |
Ga0116216_101354671 | 3300009698 | Peatlands Soil | LEVERQQGRISHQEYETAKSALDQTLQRALKREAQKA* |
Ga0116223_105492561 | 3300009839 | Peatlands Soil | EVEHKQGRISQQEYEKTKAALDQTLQRALKRATQKT* |
Ga0126380_120451071 | 3300010043 | Tropical Forest Soil | VEHKQGRISQQEYETTKAALDQTLQRALKRESQRA* |
Ga0126384_111772701 | 3300010046 | Tropical Forest Soil | ELEVERKQGKITDEEYEKARAALDYALDRALKRESVSQS* |
Ga0123356_131202111 | 3300010049 | Termite Gut | EHKQGRISREEYDKAKAALDQTLEHALKREAAKQS* |
Ga0126378_119183092 | 3300010361 | Tropical Forest Soil | EHKRGSISQQEYDKAKAALDQTLERALKRETQKA* |
Ga0126379_115309472 | 3300010366 | Tropical Forest Soil | EHKQGHISQQEYEKAKAALDQTLQRALKREAARQT* |
Ga0105239_125942622 | 3300010375 | Corn Rhizosphere | ELFQLELEHKQGKISDEEYAKTKSALDQTLARALKRNG* |
Ga0136449_1006508321 | 3300010379 | Peatlands Soil | LEMEHKLGKITQQEYEKAKAALDQTLERALKRAK* |
Ga0136449_1039166072 | 3300010379 | Peatlands Soil | FQLEVEHKQGRISQQEYEKAKAALDQTLERAVKRGVVKVS* |
Ga0134121_104100931 | 3300010401 | Terrestrial Soil | ELFQLELEHKQARISDEDYAKTKAALDQTLARALKRSS* |
Ga0137392_116399581 | 3300011269 | Vadose Zone Soil | EVEHTQGDISQQEYERARAALDQTLERALKRAALK* |
Ga0137393_110843372 | 3300011271 | Vadose Zone Soil | VERRQGQISQPEYEKAKSALDQTLERALKREAQKA* |
Ga0137389_100153977 | 3300012096 | Vadose Zone Soil | LLQLEVERKEDRVSRQEYERARAALDETLERAIKRARPK* |
Ga0137389_103165551 | 3300012096 | Vadose Zone Soil | VERKQAQISEAEYQKAKAALDQTLARALKREAQQA* |
Ga0137389_106168781 | 3300012096 | Vadose Zone Soil | KQGHLSQEEYEKAKSALDQTLERALKREATAKQT* |
Ga0137388_120342821 | 3300012189 | Vadose Zone Soil | LEVERRQGQISQSEYEKAKSALDQTLERALKREAQKA* |
Ga0137383_103651591 | 3300012199 | Vadose Zone Soil | EVEHKQGRISQEEYEKSKAALDQTLERALKRKSSTSAM* |
Ga0137371_114271222 | 3300012356 | Vadose Zone Soil | LEVERKQGNISPQEYEKHRAALDQTLERALKREAQKA* |
Ga0137384_110683242 | 3300012357 | Vadose Zone Soil | FQLEVEHKQGRISQEEYESAKSALDQTVQRALKREAQKA* |
Ga0137360_107816602 | 3300012361 | Vadose Zone Soil | EVEHKQGKITQQEYEKAKAALDGTLERAIKREAQKV* |
Ga0137395_103315091 | 3300012917 | Vadose Zone Soil | IFQLEMEHKQGQVSDQEYSKAKAALDQTLARAVKRNR* |
Ga0137395_105460471 | 3300012917 | Vadose Zone Soil | EVERRQGQISQAEYEKAKSALDQTLERALKREAQRA* |
Ga0134110_102977202 | 3300012975 | Grasslands Soil | LEVEHKQGLMSQQEYEQARAALDQTLARAIRRAALK* |
Ga0157369_109142572 | 3300013105 | Corn Rhizosphere | ERQQGQISAEEYEKQKSALDQTLKRALARVAKNS* |
Ga0157374_110218001 | 3300013296 | Miscanthus Rhizosphere | LFQLEVERKQGKLSQEEYDKARNALDHTLERALKRQA* |
Ga0157378_101742673 | 3300013297 | Miscanthus Rhizosphere | FQLEVEHKQGGISQQEYEKAKAALDQTLERALKRAALK* |
Ga0181528_101223341 | 3300014167 | Bog | LEIERRQGKITPEDYEKAKAALDQTLDRALKRQS* |
Ga0181534_108740132 | 3300014168 | Bog | ERKQGLISQAEYEKAKSALDQTLDRALKREAQKA* |
Ga0182018_103338561 | 3300014489 | Palsa | QLEVEHKQGRISQQEYEKAKAALDQTLERAVKRTAVKVS* |
Ga0182015_109546302 | 3300014495 | Palsa | EVEHKQGSISQPEYEKARAALDQTLDRAIKRDSQKK* |
Ga0181522_104717381 | 3300014657 | Bog | QLEVERKQGKITPAEYEKARAALDQTLDRALKRQQG* |
Ga0137411_11547701 | 3300015052 | Vadose Zone Soil | ISQSEYEKAKSALDQTLERALSEARGAEGVKVSTI* |
Ga0137412_105013361 | 3300015242 | Vadose Zone Soil | ERKQGQISQAEYDRAKAALDQTLERALKREAQRA* |
Ga0132258_122916701 | 3300015371 | Arabidopsis Rhizosphere | VEHKQGRISQQEYESAKSALDQTLQRALKREAQKA* |
Ga0182032_103686392 | 3300016357 | Soil | EVEHKQGRISQQEYDKTKAALDQTLQRALKREAQKQT |
Ga0187820_12695841 | 3300017924 | Freshwater Sediment | IEHKQGRITQQEYEKTKAALDHTLERALKRENQRA |
Ga0187782_107759501 | 3300017975 | Tropical Peatland | VDRKQGEITQAEYDQAKAALDQTLERALRRQAQKA |
Ga0187878_10448403 | 3300018005 | Peatland | EIERQQGLISQQDYEKQKAALDQTLQVALARRRTA |
Ga0187858_108811222 | 3300018057 | Peatland | QLEVERRQGQISQAEYENAKSAMDKTLERALKREAQKA |
Ga0187784_108228421 | 3300018062 | Tropical Peatland | QLEIERKQGKISAEDYEKAKAALDQTLDRALKRQV |
Ga0187784_108270202 | 3300018062 | Tropical Peatland | LFQLEVELKQGKITQADYDKAKSALDQTLERALKRLG |
Ga0187772_106486041 | 3300018085 | Tropical Peatland | EHKQGRISQQEYEKAKAALDQTLERALKREGRASSAVR |
Ga0187771_108047461 | 3300018088 | Tropical Peatland | EHKQGRISQAEYEKAKAALDQTLERAVKRGTTKAG |
Ga0066662_125471602 | 3300018468 | Grasslands Soil | FQLEVEHKQGRISQQEYESAKAALDQTLQRALKREAQKTS |
Ga0193728_10614211 | 3300019890 | Soil | EVERRQGQISQAEYEKAKSALDQTLERALKREAQRA |
Ga0179592_100748933 | 3300020199 | Vadose Zone Soil | LEIDRHQGAISPEEYKTTKAALDQTLARAIQRESRKS |
Ga0210403_113623771 | 3300020580 | Soil | EHKQGRISQQEYEKAKAALDQTLERAVKRGAVKVS |
Ga0210399_110997571 | 3300020581 | Soil | QLEVEHKQGKITQAEYDKTKAALDQTLERALKRQG |
Ga0210405_101199023 | 3300021171 | Soil | VQLEVEHKQGRISQQEYDSAKSALDQTLQRALKREAQKA |
Ga0210408_106725822 | 3300021178 | Soil | LEVEHKQGRITQAEYDKAKAALDQTLERAIKRGAVKTS |
Ga0210393_1000288510 | 3300021401 | Soil | LFQLEVEHKQGQISQQEYEKTKAALDQTLQHALKREAQKA |
Ga0210397_109917221 | 3300021403 | Soil | LEVEHKQGGISQQEYEKARAALDQTLERALKRAALK |
Ga0210383_107825571 | 3300021407 | Soil | IFQLEVEHKQGRISQQEYEKAKAALDQTLERAVKRGAVKVG |
Ga0210394_116500871 | 3300021420 | Soil | LFDLEVEHKQGRISQQEYEKTKAALDQTLQHALRRESQKA |
Ga0210390_104773851 | 3300021474 | Soil | QLEVERRQGQISQSEYESAKSALDQTLDRALKREAQKA |
Ga0210392_112003101 | 3300021475 | Soil | LEVEHKQGRISQQEYEKAKAALDQTLERAVKRGAVKVG |
Ga0210402_113703561 | 3300021478 | Soil | FQLEVEKKQGKITPEDYEKARAALDQTLDRALKRQG |
Ga0210402_114575791 | 3300021478 | Soil | FQLEVEHKQGRISQPEYEKVKAALDQTLERALARSAPK |
Ga0213851_13229691 | 3300021860 | Watersheds | QLEVEHKQGSISQQEYEKTKAALDQTLERALKREAAKQT |
Ga0242655_102129891 | 3300022532 | Soil | ELFDLEVEHKQGRISQQEYEMTKAALDQTLQRALKREAQRT |
Ga0207656_101282851 | 3300025321 | Corn Rhizosphere | QLEVERQQGSITQQEYEKHKAALDQTLQRAISRTAQKV |
Ga0208039_10918741 | 3300025454 | Peatland | LEVERKQGLISQAEYEKAKSALDQTLDRALKREAQKA |
Ga0208820_11137832 | 3300025576 | Peatland | FQLEIERQQGVITQEDYEKQKAALDQTLKRALARTRRDNV |
Ga0207679_107790251 | 3300025945 | Corn Rhizosphere | QLEMEHKQGSISQEEYAKAKTALDQTLERALKRKPMA |
Ga0209687_12109401 | 3300026322 | Soil | LDRKQGRITPEEYAKTKTALDQTLDHALKRESQKV |
Ga0257177_10782881 | 3300026480 | Soil | FQLEVEHTQGDISQQEYERARAALDQTLERALKRAALK |
Ga0209332_10814391 | 3300027439 | Forest Soil | FQLEVERRQGQISQAEYEKAKSALDQTLERALKREAQRA |
Ga0209422_10854621 | 3300027629 | Forest Soil | IEHKQGRISQQEYEKTKSALDQTLQRALKREAQKA |
Ga0209328_100331911 | 3300027727 | Forest Soil | LFQLEVEHKQGRILQPEYERARAALDQTLDRAIKRAPRK |
Ga0209908_101223422 | 3300027745 | Thawing Permafrost | FQLEVERNQGQISQSEYEKAKSALDQTLERALRREAQKA |
Ga0209811_103001231 | 3300027821 | Surface Soil | LFELEIEHKQGRISQQEYESAKAALDQTLQRALKRESQKA |
Ga0209580_102524561 | 3300027842 | Surface Soil | LKDEIFELEIEHKQGRITQQEYEKTKSALDQTLQRALKREAQKA |
Ga0209274_101353721 | 3300027853 | Soil | VEHKQGRISQLEYESAKAALDQTLQRALKRVAPKA |
Ga0209693_102651831 | 3300027855 | Soil | QLEMEHKQGKISQQEYEKAKAALDGTLERALKRDAQRN |
Ga0209167_107354401 | 3300027867 | Surface Soil | LFQLEVEHKQGHISQQEYEKTKAALDQTLQHALKREAQKA |
Ga0209579_106882952 | 3300027869 | Surface Soil | DLEVEHKQGRISQQEYETTKAALDQTLQRALKRESQKA |
Ga0209283_100592651 | 3300027875 | Vadose Zone Soil | LEVEHKQGGISRQEYERARAALDQTLERALKRAALK |
Ga0209169_104550341 | 3300027879 | Soil | QLEVEHKQGRITQQEYEKAKAALDQTLERAVKRGAVKVG |
Ga0209067_108717651 | 3300027898 | Watersheds | DELFDLEVEHKQGLISQQEYEKTKAALDQTLQRALKREAQRT |
Ga0209168_105029742 | 3300027986 | Surface Soil | LFQLEVERRQGQISQAEYEKAKSALDQTLERALKREATKV |
Ga0209526_103113132 | 3300028047 | Forest Soil | QLEVERRQGQISQSEYEKAKSALDQTLERALKREAQKA |
Ga0209526_105915522 | 3300028047 | Forest Soil | KEEIFELEVEHKQGRISQQEYESAKSALDQTLQRALKREGARQT |
Ga0246001_10044531 | 3300029889 | Peat | EVERKQGQISQADYERAKSALDQTLDRALKREAQKA |
Ga0302182_101842781 | 3300030054 | Palsa | LEVERRQGQISQSEYESAKSALDQTLDRALKREAQKA |
Ga0316363_102762652 | 3300030659 | Peatlands Soil | EVEHKQGRISQQEYEKTKAALDQTLQRALKRATQKT |
Ga0265762_10217202 | 3300030760 | Soil | VEHKQGRISQQEYEKAKAALDQTLERALKRSAVKVS |
Ga0170834_1122726372 | 3300031057 | Forest Soil | FQLEVDHTQGRITQQEYDSAKSALDQTLQRALKREAQKA |
Ga0265760_100695832 | 3300031090 | Soil | FQLEVEHKQGQISQQEYEKTKAALDQTLQHALKREAQKA |
Ga0318574_108900781 | 3300031680 | Soil | VEHKQGKISQQEYEKAKAALDGTLERAIKRDAQQN |
Ga0307476_109599902 | 3300031715 | Hardwood Forest Soil | LEVERRQGQISQAEYEKAKSALDQTLERALKREAQRG |
Ga0307475_101467833 | 3300031754 | Hardwood Forest Soil | LEVERKQGKITPADYEKARAALDQTLERALKRQQG |
Ga0307478_107731381 | 3300031823 | Hardwood Forest Soil | EIFQLEVEHKQGRISQQEYDSAKSALDQTLQRALKREAQKA |
Ga0307478_113650861 | 3300031823 | Hardwood Forest Soil | QLEIEHQQGQISDPEYAKAKSALDQTLSRAIKRKG |
Ga0310917_106519441 | 3300031833 | Soil | FQLELEHKQGRISQQEYEKAKSALDQTLERALRRTTSKTT |
Ga0318536_107100642 | 3300031893 | Soil | QLEVEHKQGKISQQEYEKAKAALDGTLERAIKRDAQQN |
Ga0311367_122874403 | 3300031918 | Fen | ELELERKQGKISPPDYEKARAALDQTLDRALKRKA |
Ga0311301_100022401 | 3300032160 | Peatlands Soil | VEHKQGRISQQEYEKAKAALDQTLERAVKRGAIKVTS |
Ga0348332_121882002 | 3300032515 | Plant Litter | FQLEVEHKQGRISQQEYEKAKAALDQTLERAVKRGAVKVS |
Ga0335085_103017944 | 3300032770 | Soil | QLEVEHKQGRISQAEYEKAKSALDQTLERAIKRVGKS |
Ga0335082_100991481 | 3300032782 | Soil | VEHKQGRISQQEYEKAKTALDQTLERALKRTMAKAT |
Ga0335079_104624911 | 3300032783 | Soil | LEVEHKQGRISQQEYEKAKAALDQTLERAVKRGTAKVT |
Ga0335081_120272761 | 3300032892 | Soil | EVERQQGRISDAEYQSTKSALDQTLLRALARAKGTAHS |
Ga0335072_106116081 | 3300032898 | Soil | EHKRGEISQQEYEKAKSALDQTLQRALKRDAARPV |
Ga0335072_110688382 | 3300032898 | Soil | IERKQGKISADDYEKAKAALDQTLDRALRRSGLSS |
Ga0335084_108138723 | 3300033004 | Soil | QLEIEKEQGKISAEDYESTKAALNQTLRRALQRKNS |
Ga0371490_11213651 | 3300033561 | Peat Soil | QLEVERKQGLISQAEYEKAKSALDQTLDRALKREAQKA |
Ga0334854_021037_1458_1580 | 3300033829 | Soil | LFQLEVERRQGQISQSEYESAKSALDQTLDRALKREAQKA |
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