Metagenome Family F056096

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F056096
Family Type	Metagenome
Number of Sequences	138
Average Sequence Length	90 residues
Representative Sequence	MTMMTAPWKRIRSALLAVAVLAAWTGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQEIADLKRKVDRTGPKG
Number of Associated Samples	112
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.23 %
% of genes near scaffold ends (potentially truncated)	26.09 %
% of genes from short scaffolds (< 2000 bps)	88.41 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (70.290 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (9.420 % of family members)
Environment Ontology (ENVO)	Unclassified (36.232 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.072 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 63.64% β-sheet: 0.00% Coil/Unstructured: 36.36%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF01578	Cytochrom_C_asm	28.26
PF02771	Acyl-CoA_dh_N	21.01
PF00155	Aminotran_1_2	2.90
PF00535	Glycos_transf_2	2.17
PF07586	HXXSHH	1.45
PF00733	Asn_synthase	0.72
PF08281	Sigma70_r4_2	0.72
PF00113	Enolase_C	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	21.01
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.29 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.29 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.29 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.51 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	35.51 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	35.51 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	21.74 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	12.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	21.74 %
Nannocystineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae	7.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	21.74 %
Kofleriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae	7.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	21.74 %
Haliangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium	7.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	21.74 %
Haliangium ochraceum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	7.97 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101264712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	687	Open in IMG/M
3300003321\|soilH1_10274255	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1612	Open in IMG/M
3300004114\|Ga0062593_101363434	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300004156\|Ga0062589_100389936	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300004156\|Ga0062589_100529558	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300004156\|Ga0062589_100813800	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300004463\|Ga0063356_100910331	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1244	Open in IMG/M
3300004463\|Ga0063356_101567084	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300004480\|Ga0062592_100393492	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300004633\|Ga0066395_10003461	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	5461	Open in IMG/M
3300005093\|Ga0062594_102607146	Not Available	558	Open in IMG/M
3300005166\|Ga0066674_10238500	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300005329\|Ga0070683_100021833	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	5714	Open in IMG/M
3300005329\|Ga0070683_101167270	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300005331\|Ga0070670_100601490	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	984	Open in IMG/M
3300005343\|Ga0070687_100631611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	740	Open in IMG/M
3300005354\|Ga0070675_101644669	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005355\|Ga0070671_101029474	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005355\|Ga0070671_102006481	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005364\|Ga0070673_100793982	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	874	Open in IMG/M
3300005365\|Ga0070688_100919214	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300005367\|Ga0070667_100669784	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005367\|Ga0070667_100760899	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300005434\|Ga0070709_10702566	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300005444\|Ga0070694_101139267	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300005456\|Ga0070678_102271388	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005466\|Ga0070685_10091732	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1840	Open in IMG/M
3300005466\|Ga0070685_10424556	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300005549\|Ga0070704_101183690	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300005560\|Ga0066670_11010325	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	508	Open in IMG/M
3300005614\|Ga0068856_102255677	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005615\|Ga0070702_100863408	Not Available	705	Open in IMG/M
3300005713\|Ga0066905_100950673	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005719\|Ga0068861_102270851	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005836\|Ga0074470_10485478	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3089	Open in IMG/M
3300005836\|Ga0074470_11491385	Not Available	580	Open in IMG/M
3300005840\|Ga0068870_10725368	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300005841\|Ga0068863_100530604	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300005841\|Ga0068863_102712263	Not Available	504	Open in IMG/M
3300005844\|Ga0068862_102600848	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300006046\|Ga0066652_100602825	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300006163\|Ga0070715_10611857	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	640	Open in IMG/M
3300006237\|Ga0097621_100140679	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	2062	Open in IMG/M
3300006358\|Ga0068871_101239835	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300006844\|Ga0075428_101721283	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300006844\|Ga0075428_102548673	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300009094\|Ga0111539_11813990	Not Available	707	Open in IMG/M
3300009100\|Ga0075418_12319359	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300009156\|Ga0111538_12412286	Not Available	660	Open in IMG/M
3300009157\|Ga0105092_10692207	Not Available	592	Open in IMG/M
3300009551\|Ga0105238_12569113	Not Available	545	Open in IMG/M
3300009609\|Ga0105347_1062984	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1348	Open in IMG/M
3300010362\|Ga0126377_11545108	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	738	Open in IMG/M
3300010366\|Ga0126379_10140672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2231	Open in IMG/M
3300010398\|Ga0126383_10670337	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1114	Open in IMG/M
3300010398\|Ga0126383_12894067	Not Available	561	Open in IMG/M
3300010399\|Ga0134127_12511836	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	595	Open in IMG/M
3300010400\|Ga0134122_10157915	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1849	Open in IMG/M
3300011119\|Ga0105246_10974496	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	766	Open in IMG/M
3300011403\|Ga0137313_1046715	Not Available	746	Open in IMG/M
3300011409\|Ga0137323_1060821	Not Available	831	Open in IMG/M
3300011420\|Ga0137314_1033444	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300011430\|Ga0137423_1078639	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	979	Open in IMG/M
3300011432\|Ga0137428_1026118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1479	Open in IMG/M
3300011435\|Ga0137426_1219188	Not Available	567	Open in IMG/M
3300011439\|Ga0137432_1021409	Not Available	1866	Open in IMG/M
3300011441\|Ga0137452_1287485	Not Available	550	Open in IMG/M
3300012041\|Ga0137430_1028941	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300012160\|Ga0137349_1096588	Not Available	548	Open in IMG/M
3300012212\|Ga0150985_105346678	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1122	Open in IMG/M
3300012212\|Ga0150985_120779597	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	619	Open in IMG/M
3300012212\|Ga0150985_120782941	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	642	Open in IMG/M
3300012227\|Ga0137449_1080419	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300012353\|Ga0137367_10057554	All Organisms → cellular organisms → Bacteria	2908	Open in IMG/M
3300012469\|Ga0150984_111186362	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	765	Open in IMG/M
3300012469\|Ga0150984_114085846	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	678	Open in IMG/M
3300012951\|Ga0164300_10510284	Not Available	689	Open in IMG/M
3300012961\|Ga0164302_10998534	Not Available	652	Open in IMG/M
3300012987\|Ga0164307_10476472	Not Available	938	Open in IMG/M
3300012987\|Ga0164307_11503714	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M
3300013297\|Ga0157378_11620874	Not Available	693	Open in IMG/M
3300014166\|Ga0134079_10244507	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	773	Open in IMG/M
3300014325\|Ga0163163_11961164	Not Available	645	Open in IMG/M
3300015200\|Ga0173480_10405735	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	792	Open in IMG/M
3300015371\|Ga0132258_10467215	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3148	Open in IMG/M
3300015371\|Ga0132258_13626676	Not Available	1055	Open in IMG/M
3300015372\|Ga0132256_100235301	All Organisms → cellular organisms → Bacteria	1894	Open in IMG/M
3300015372\|Ga0132256_101725960	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	735	Open in IMG/M
3300015373\|Ga0132257_103296612	Not Available	588	Open in IMG/M
3300015374\|Ga0132255_103268322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	691	Open in IMG/M
3300015374\|Ga0132255_103877038	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	635	Open in IMG/M
3300015374\|Ga0132255_104547705	Not Available	588	Open in IMG/M
3300018067\|Ga0184611_1216364	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	681	Open in IMG/M
3300018073\|Ga0184624_10132879	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300018083\|Ga0184628_10051175	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2086	Open in IMG/M
3300018083\|Ga0184628_10088310	All Organisms → cellular organisms → Bacteria	1587	Open in IMG/M
3300018481\|Ga0190271_10003460	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	9893	Open in IMG/M
3300019361\|Ga0173482_10020693	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1863	Open in IMG/M
3300019361\|Ga0173482_10029589	Not Available	1641	Open in IMG/M
3300019362\|Ga0173479_10103835	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300022756\|Ga0222622_10086239	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300022756\|Ga0222622_10200880	Not Available	1323	Open in IMG/M
3300024187\|Ga0247672_1004427	All Organisms → cellular organisms → Bacteria	2271	Open in IMG/M
3300024323\|Ga0247666_1103979	Not Available	564	Open in IMG/M
3300025315\|Ga0207697_10291562	Not Available	723	Open in IMG/M
3300025903\|Ga0207680_10181173	Not Available	1424	Open in IMG/M
3300025912\|Ga0207707_10389544	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1197	Open in IMG/M
3300025924\|Ga0207694_11784522	Not Available	517	Open in IMG/M
3300025925\|Ga0207650_10146833	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1858	Open in IMG/M
3300025926\|Ga0207659_10727468	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	850	Open in IMG/M
3300025928\|Ga0207700_12003905	Not Available	506	Open in IMG/M
3300025930\|Ga0207701_10064386	All Organisms → cellular organisms → Bacteria	3338	Open in IMG/M
3300025930\|Ga0207701_10181613	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1855	Open in IMG/M
3300025931\|Ga0207644_11304223	Not Available	610	Open in IMG/M
3300025936\|Ga0207670_10479019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1008	Open in IMG/M
3300025937\|Ga0207669_11819898	Not Available	520	Open in IMG/M
3300025940\|Ga0207691_10199920	All Organisms → cellular organisms → Bacteria	1740	Open in IMG/M
3300025944\|Ga0207661_10011132	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6504	Open in IMG/M
3300025944\|Ga0207661_11068402	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	743	Open in IMG/M
3300025960\|Ga0207651_10708279	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	887	Open in IMG/M
3300025986\|Ga0207658_10086386	All Organisms → cellular organisms → Bacteria	2419	Open in IMG/M
3300025986\|Ga0207658_10511075	Not Available	1071	Open in IMG/M
3300025986\|Ga0207658_11370846	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	647	Open in IMG/M
3300026078\|Ga0207702_12448992	Not Available	509	Open in IMG/M
3300026116\|Ga0207674_10826102	Not Available	894	Open in IMG/M
3300027717\|Ga0209998_10041683	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300027874\|Ga0209465_10018917	All Organisms → cellular organisms → Bacteria	3159	Open in IMG/M
3300027907\|Ga0207428_10040963	All Organisms → cellular organisms → Bacteria	3752	Open in IMG/M
3300028768\|Ga0307280_10005688	All Organisms → cellular organisms → Bacteria	3232	Open in IMG/M
3300028802\|Ga0307503_10068305	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1419	Open in IMG/M
3300031366\|Ga0307506_10324157	Not Available	610	Open in IMG/M
3300031547\|Ga0310887_10046232	All Organisms → cellular organisms → Bacteria	1928	Open in IMG/M
3300031858\|Ga0310892_10728880	Not Available	682	Open in IMG/M
3300032017\|Ga0310899_10454090	Not Available	623	Open in IMG/M
3300032074\|Ga0308173_12172666	Not Available	524	Open in IMG/M
3300032075\|Ga0310890_11465142	Not Available	562	Open in IMG/M
3300032126\|Ga0307415_101354025	Not Available	676	Open in IMG/M
3300034148\|Ga0364927_0095952	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	820	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.70%
Host-Associated	Host-Associated	41.30%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	43.48%
Plants	Host-Associated → Plants	41.30%
Aquatic	Environmental → Aquatic	15.22%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.94%
Sediment	Environmental → Aquatic → Sediment	14.49%
Roots	Host-Associated → Plants → Roots	2.17%
Freshwater	Environmental → Aquatic → Freshwater	0.72%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.49%
Loam	Environmental → Terrestrial → Soil → Loam	13.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.52%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.17%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.07%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.35%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.17%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.45%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	9.42%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	8.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.35%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.62%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.17%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.17%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.17%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.45%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.72%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012227	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT436_2	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024187	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1012647121	3300000364	Soil	MKTALKVIQRAVLAVVVLGTMVQMSGVALAQQFEKVENIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRKVGQGSGQSRG*
soilH1_102742553	3300003321	Sugarcane Root And Bulk Soil	MKSTAMWKAIRSALVAAVLLAIWSGIALAQQFEKVENIPKQEIPAGRFVSIAYGIIWLAILTYVVFVAAGVKRVNQEIADLKRKVDRAVTKG*
Ga0062593_1013634341	3300004114	Soil	MTMMTAAWKRIRIALFAAVALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLG
Ga0062589_1003899362	3300004156	Soil	MTTIATIAMIGRWMRRAVLAMAVLAVSAAPALAQQFEKVDRIQREEIPAARFVAIAYGIIWLAILTYVLFVAGGLRRVNDEIADLKRRLRSKE*
Ga0062589_1005295582	3300004156	Soil	MTKTSIRQWIRGAVLTAVALAAWSGTALAQEFEKIENIPKQEIPAGRFVSIAYGIIWVAVLTYVVIVAGGVKRVSQQIADLKRRLGSKG*
Ga0062589_1008138002	3300004156	Soil	MKTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRLGSRG*
Ga0063356_1009103312	3300004463	Arabidopsis Thaliana Rhizosphere	MKTMMSTAWKRTRTAILSLVALASLSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAIISYVVIVASGLKRANQEIADLKRKLGSK*
Ga0063356_1015670842	3300004463	Arabidopsis Thaliana Rhizosphere	MTTMTTAWRRIRIALFAAMALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQEIADVKRRLTPKDR*
Ga0062592_1003934922	3300004480	Soil	MTMMTAAWKRIRIALFAAVALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLGPKG*
Ga0066395_100034614	3300004633	Tropical Forest Soil	MITAIARPVRRFLFAAAVLVAWSGTALAQQFEKVENIPKQEIPAGRFVSIAYGIIWLAILAYVVIVAAGVKRVNQEIADLKRKVDRAGPKG*
Ga0062594_1026071461	3300005093	Soil	MTLMTAAWKRIRMALFAATALVALTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKVDRTGLKG*
Ga0066674_102385003	3300005166	Soil	MTILTAAWKRTTTLLIAAVALAGTPAAALAQQFEKVGNLPQQEVPAGKFVAIAYGIIWLAVLTYVVLVASGVKRVNQEIADLNRKLGRKP*
Ga0070683_1000218334	3300005329	Corn Rhizosphere	MKTAWNVIRRATLAVVVLAASSGVALAQQFEKVTNIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLNRVNQEIADLKRRLGSKG*
Ga0070683_1011672702	3300005329	Corn Rhizosphere	MNTTTAIWKRIRSGLLAVVALAALSGTALAQQFEKIENIPRQDIPAGRFVSIAYGIIWLAILSYVVFVAAGVKRVNQEIAELRRKVDRAGPKA*
Ga0070670_1006014902	3300005331	Switchgrass Rhizosphere	MTRTTTTTMTATWKRIRTAALAVIALVSWSGAALAQQFEKVENLPRQEVPAGRFVAIAYGIIWLAVLAYIVIVAAGIKRVNQEIADLKRKVDRHGPKA*
Ga0070687_1006316112	3300005343	Switchgrass Rhizosphere	MKTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVN
Ga0070675_1016446692	3300005354	Miscanthus Rhizosphere	ALFAAVALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLGPKG*
Ga0070671_1010294742	3300005355	Switchgrass Rhizosphere	MKTAWKMIQRTVLAAVVLVAATLMTSASALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLIVAGGLKRVNHEITDLKRRLGSGGDGSRS*
Ga0070671_1020064811	3300005355	Switchgrass Rhizosphere	WMRRAVLATALLAVSAAPALAQQFEKVERIQREEIPAARFVAIAYGIIWIAILTYVVVVAGGLRRVNDEIADLKRRLRSKG*
Ga0070673_1007939821	3300005364	Switchgrass Rhizosphere	TILTRAWKRTRVAILSLIALASLSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWMAILAYVVIVASNIKRANQEIAELKRKLGPKP*
Ga0070688_1009192142	3300005365	Switchgrass Rhizosphere	MTLMTAAWKRIRMALFAATALVALTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQEIAELKRKLGPKG*
Ga0070667_1006697842	3300005367	Switchgrass Rhizosphere	MNMKRKTALKVIRTAALAAVVLAASAGAALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLAYVVIVASGVKRVNQEIADLNRKLGRK
Ga0070667_1007608993	3300005367	Switchgrass Rhizosphere	MTTTIGRWMRRAVLATALLAVSAAPALAQQFEKVERIQREEIPAARFVAIAYGIIWIAILTYVVVVAGGLRRVNDEIADLKRRLRSKG*
Ga0070709_107025661	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTMTAIWKRVRSALLATAALAAWSGTALAQQFEKVENIPRQEIPAGRFVSIAYGIIWLAILSYVVIVAAGVKRVNQEIAELKRKVDRQGSKS*
Ga0070694_1011392671	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTTMTTAWRRIRIALFAAMALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAILAYVVMVAAGVKRVNQEIAELKRKLGPKG*
Ga0070678_1022713881	3300005456	Miscanthus Rhizosphere	MTLMTAAWKRIRMALFAATTLIALTGAALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRQLGPKG*
Ga0070685_100917323	3300005466	Switchgrass Rhizosphere	MKTILTRAWKRTRVAILSLIALASLSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWMAILAYVVIVASNIKRANQEIAELKRKLGPKP*
Ga0070685_104245563	3300005466	Switchgrass Rhizosphere	MTMMTAALKRIRSALFAVAMLAVWSGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKVDRTGLKG*
Ga0070704_1011836901	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTKTSIRQWIRGAVLTAVALAAWSGTALAQEFEKIENIPKQEIPAGRFVSIAYGVIWVAVLTYVVIVAGGVKRVSQQIADLKRRLGSKG*
Ga0066670_110103251	3300005560	Soil	MKTAWNTVRRVALAVVLLVASSGAAVAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVVLVAGGLRRVNQE
Ga0068856_1022556772	3300005614	Corn Rhizosphere	MKTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVSIAYGIIWLAILSYVVFVAAGVKRVNQEIAELRRKVDRAGPKA*
Ga0070702_1008634082	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MTMMTAAWRRTRGAFLAVVVLAAWAGPALAQQFEKVENIPRQEIPAGRFVSIAYGIIWLAILAYVVIVAAGIKRVNHEITELRRKVDRSGPKA*
Ga0066905_1009506732	3300005713	Tropical Forest Soil	MTRMSLWRWIRNAVLAVVALAAWSGTALAQQMVNAESMPKQEIPAGRFVSIAYGIIWLAILTYVVIVAASVRRVHDEIADLKRKVDRLGSKG*
Ga0068861_1022708512	3300005719	Switchgrass Rhizosphere	MKTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRIGSRG*
Ga0074470_104854781	3300005836	Sediment (Intertidal)	MNMKRKTALKVIRTAALAAVGLAASAGAALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLLVAGGLKRVNQEIADLKRKLASGGGSG
Ga0074470_114913851	3300005836	Sediment (Intertidal)	MKTAWKVIRRAALAAVVLAALVQMSGAAVAQQYEKVENIPKQEIPAGRFVGIAYGIIWLAVLTYVLLVAGGLKRVNQEIADLKRKVDRQGSKG*
Ga0068870_107253682	3300005840	Miscanthus Rhizosphere	MTTMTTAWKRIRIALFAAMALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRQLGPKG*
Ga0068863_1005306043	3300005841	Switchgrass Rhizosphere	MKTILTRAWKRTRVAILSLIALASLSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILTYVVLVASGVKRVNQEIADLKRKVDWSGSKL*
Ga0068863_1027122632	3300005841	Switchgrass Rhizosphere	MTMLTTAWKRMRTLLVAAIALAATPAAAVAQQFEKVENLPRQEVPAGKFVAIAYGIIWLAVLTYVVIVASGVKRVSQEIADLNRKLGRKP*
Ga0068862_1026008481	3300005844	Switchgrass Rhizosphere	TAWKRIRIALFAAMALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKVDRTGLKG*
Ga0066652_1006028253	3300006046	Soil	MKTAWKMIQRSVLAAVVVVAATLTTSASALAQQFEKIEIIPKQEIPAGRFVGIAYGIIWLAVLTYVVLVASGVKRVNQEIADLNRKLGRKP*
Ga0070715_106118572	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MNTTTAVWKRIRSGLLALVALAACSGTALAQQFEKIENIPRQDIPAGRFVSIAYGIIWLAILSYVVFVAAGVKRVNQEIGELRRKVDRAGGV
Ga0097621_1001406793	3300006237	Miscanthus Rhizosphere	MKTKAISPWIRGAALAVVALAMWSGTALAQQFEKVENIPRQEIPAGRFVSIAYGIIWLAILAYIVIVAAGVKRVDQEIADLKRKVDRSGPKA*
Ga0068871_1012398352	3300006358	Miscanthus Rhizosphere	MKSTAIWKAIRSAVVAAILLATWSGVALAQQFEKVENIPKQEIPAGRFVSIAYGIIWLAILTYVVFVAAGLKRVNQEIADLKRKVDRAVTKG*
Ga0075428_1017212832	3300006844	Populus Rhizosphere	MNKMTTTAWKWIRGAVLALVVFASWSGTALAQQMVKVESIAKQEIPAGRFVSIAYGIIWLAILAYVVIVAAAVKRVHLEIADLKRKVDRSGPKG*
Ga0075428_1025486731	3300006844	Populus Rhizosphere	MTTMTAAWKRIRIAAVAAMAVVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKVDRTGLKG*
Ga0111539_118139902	3300009094	Populus Rhizosphere	MTTMTAAWKRIRIAVVAAMAVVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKVDRTGLKG*
Ga0075418_123193592	3300009100	Populus Rhizosphere	MIAATGKRIWAAVIAAVILVGGSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAIISYVVIVASGLKRANQEIADLKRKLGSK*
Ga0111538_124122861	3300009156	Populus Rhizosphere	TMTSAPTWKRIRTAVLALVVLASSAGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILTYVVLVASGIKRVNQEIADLKRKVDRSGSKP*
Ga0105092_106922071	3300009157	Freshwater Sediment	MTIMTAAWRRIQRAAVVVVALVAWTGTALAQEFDKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAEGVKRVNQEIADLKRK
Ga0105238_125691132	3300009551	Corn Rhizosphere	MNTTTAVWKRIRSALLAVVALAAWSGTALAQQFEKIENIPKQDIPAGRFVSIAYGIIWLAILSYVVFVAAGVKRVNQEIAELRRKVDRAGPKA*
Ga0105347_10629843	3300009609	Soil	GTPMTTMTAVWKRIRIAAVTAVALAVWTGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLGPKG*
Ga0126377_115451082	3300010362	Tropical Forest Soil	MTKTILWRKMRGAVLAVVALAAWSGPALAQQFEKVENIPKQEIPAGRFVSIAYGIIWLAILTYVVIVAAGVKRVNQEI
Ga0126379_101406723	3300010366	Tropical Forest Soil	MMTAIARPVRRFLFAAAVLVAYSGTALAQQFEKVENIPKQEIPAGRFVSIAYGIIWLAILAYVVIVAAGVKRVNQEIADLKRKVDRAGPKG*
Ga0126383_106703373	3300010398	Tropical Forest Soil	MMTAIARPVRRFLFAAAVLVACSGTALAQQFEKVENIPKQEIPAGRFVSIAYGIIWLAILAYVVIVAAGVKRVNQEIADLKRKVDRAGPKG*
Ga0126383_128940671	3300010398	Tropical Forest Soil	MTMTMTKMTAVWRRIRTWVLAAAVLAAASGTALAQQFEKVENIPRQEIPAGRFVSIAYGIIWLAILAYVVIVAAGVKRVSQEIAELKRKVDRAGSKP*
Ga0134127_125118361	3300010399	Terrestrial Soil	MTTWKRIWTVLIAAVVLVGGAGAALAQQFEKVENLPRQELPAGRFVAIAYGIIWLAILAYVVYGASWSKRANDEIADLKRK
Ga0134122_101579152	3300010400	Terrestrial Soil	MKTAWNVIRGAARAGVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRLGSRG*
Ga0105246_109744962	3300011119	Miscanthus Rhizosphere	MKTAWNVIRRATLAVVVLAASSGVALAQQFEKVTNIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRLGSKG*
Ga0137313_10467153	3300011403	Soil	VVAVALVAWTGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQEIADVKRQLGPKG*
Ga0137323_10608212	3300011409	Soil	MTIMTAAWRRIQRAAVVAVALVAWTGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQEIADLKRKVDRTGPKG*
Ga0137314_10334442	3300011420	Soil	MTMMTAPWKRIRSALLAVAVLAAWTGTALAQEFEKVENIPKQEIPAGQFVSIAYGIIWLAVLAYVVMVATGVKRVNQEIADLKRKVDRTGPKG*
Ga0137423_10786392	3300011430	Soil	MTMMTAAWKRIRSALLAVAVLAAWTGTALAQEFEKVENIPKQDIPAGRFVSIAYGIIWLAVLAYVVMVATGVKRVNQEIADLKRKVDRTGPKG*
Ga0137428_10261183	3300011432	Soil	MTIMTAAWRRIQRAAVVAVALVAWTGTALAQEFEKVENIPKQDIPAGRFVSIAYGIIWLAVLAYVVMVATGVKRVNQEIADLKRKVDRTGPKG*
Ga0137426_12191881	3300011435	Soil	MTMMTAPWKRIRSALLAVAVLAAWTGTALAQEFEKVENIPKQDIPAGRFVSIAYGIIWLAVLAYVVMVATGVKRV
Ga0137432_10214092	3300011439	Soil	MTMMTAPWKRIRSALLAVAVLAAWTGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQEIADLKRKVDRTGPKG*
Ga0137452_12874852	3300011441	Soil	MMTAAWKRIRGALFAVAVLAAWSGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAILAYVVMVAAGVKRVNQEIAELKRKLGPRG*
Ga0137430_10289412	3300012041	Soil	MTMMTAAWKRIRSALLAVAVLAAWTGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLGPKG*
Ga0137349_10965882	3300012160	Soil	MTMMTAAWKRIGMALFAAVALVASTGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKADRTGLKG*
Ga0150985_1053466782	3300012212	Avena Fatua Rhizosphere	MKTAWKMIQRPVLAAVVLVVATLMTSASALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLLVAGGLKRVNQEIADLKRRLGSGGDGSRS*
Ga0150985_1207795972	3300012212	Avena Fatua Rhizosphere	MKTTKTMMAARKWIRTAALAVIAVASWSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILTYVMIIAAGIKRVDQEIAELKGKVDRQGARP*
Ga0150985_1207829412	3300012212	Avena Fatua Rhizosphere	MKTTKTMTTTTTARKWIRTAVLALIALASWSGAALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILTYVVIIAAGVRRVDREIAELKSKVDRQGPRS*
Ga0137449_10804192	3300012227	Soil	MTMMKAALKRIRGALFAVAVLAVWSGTALAQEFEKVENIPKQEIPAGRFVMIAYSIIWLAILAYMVRVAAGVKRVNQEIADLKRKLGPKG*
Ga0137367_100575543	3300012353	Vadose Zone Soil	MKTASKMIHRAVLAAVVLVAATLMTSASALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLLVAGGLKRVNHEIADLKRRFGSGGDGSRS*
Ga0150984_1111863622	3300012469	Avena Fatua Rhizosphere	MKTAWKMIQRLALAAVVLVAATLMTSGSALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLLVAGGLKRVNQEIADLKRRLGSGGDGSRS*
Ga0150984_1140858462	3300012469	Avena Fatua Rhizosphere	MKTAWKMIPGPALAAVALVAATLMTSASALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLVVAGGLKRVNHEIADLKRRLGSGSDGSRS*
Ga0164300_105102842	3300012951	Soil	MRRAVLATALLAVSAAPALAQQFEKVERIQREEIPAARFVAIAYGIIWIAILTYVVVVAGGLRRVNDEIADLKRRLRSKG*
Ga0164302_109985342	3300012961	Soil	MNMKWKTALKVIRTAALGAVVLVASAGAALAQQFEKIENIPKQELPAGRFVGIAYGIIWLAVLTYVLVVAGGLRRVNQEIADLKRKVDSQASGGGSRG*
Ga0164307_104764721	3300012987	Soil	MNMKRKTALKVIRTAALAAVVLAASAGAALAQQFEKIENIPRQDIPAGRFVSIAYGIIWLAVLTYVLLVAGGLKRVNQEIADLKRKLAGSGGSSGSRG*
Ga0164307_115037141	3300012987	Soil	MRRAVLATALLAVSAAPALAQQFEKVERIQREEIPAARFVAIAYGIIWIAILTYVVVVAGGLRRVNDEIADLKRRLRSK
Ga0157378_116208741	3300013297	Miscanthus Rhizosphere	EPMNMKRKTALKVIRTAALAAVVLAASAGAALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVVLVAGGLKRVNQEIADLKRRLGSRG*
Ga0134079_102445071	3300014166	Grasslands Soil	MTILTAAWKRTTTLLIAAVALAGTPAAALAQQFEKVGNLPQQEVPAGKFVAIAYGIIWLAVLTYVLLVAGGLKRVNQE
Ga0163163_119611641	3300014325	Switchgrass Rhizosphere	TMTRTTTMTAAWKRIRTAALAVIALVSWSGAALAQQFEKVENLPRQEVPAGRFVAIAYGIIWLAVLAYIVIVAAGIKRVNQEIADLKRKVDRHGPKA*
Ga0173480_104057352	3300015200	Soil	MIAATGKRIWAAVIAAVILVGGSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILTYVVLVASGVKRVNQEIADLKRKVDRSGSKL*
Ga0132258_104672153	3300015371	Arabidopsis Rhizosphere	MTTIKAAGKWIRTAVAAVVALAVWSGTALAQEFEKVENIPKQEVPAGKFVAIAYSIIWLAIIVYVVIVASGVRRVNQEVADLKRKLDRR*
Ga0132258_136266763	3300015371	Arabidopsis Rhizosphere	MTMTMMRTTTSSPTWKRIRTALLALVVLASSAGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILSYVVVVASGIKRVNQEIADLKRRVDRAGSNS*
Ga0132256_1002353013	3300015372	Arabidopsis Rhizosphere	MTILSAVWKRMSTLLVAAIALAATPAVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILSYVVVVASGIKRVNQEIA
Ga0132256_1017259602	3300015372	Arabidopsis Rhizosphere	MKAALKVVQRAALAALVLVVSSGAALAQQFEKVENIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIANLKRKLDSKG*
Ga0132257_1032966121	3300015373	Arabidopsis Rhizosphere	MTKTSIRQWIRGAVLTAVALAAWSGTALAQEFEKIENIPKQEIPAGRFVSIAYGIIWVAVLTYVVIVAGGVKRVSQQIAD
Ga0132255_1032683221	3300015374	Arabidopsis Rhizosphere	MIAATGKRIWAAVIAAVILVGGSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILAYVVFVAAGVKRVNQEIADLKRKIDRAVTK
Ga0132255_1038770382	3300015374	Arabidopsis Rhizosphere	MTTRAISRWIRGAAIAVIALAAWSGTALAQQFEKVENIPRQEIPAGRFVSIAYGIIWLAILAYVVIVAAGVKRVNQEIADLKRKLGPKA*
Ga0132255_1045477052	3300015374	Arabidopsis Rhizosphere	MRTAALAVVVLAVASGAALAQQFEKVENIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIANLKRKLDSKG*
Ga0184611_12163642	3300018067	Groundwater Sediment	MKKALKVVQRAVLAAVVLALSSGAALAQQFEKVENIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRKLGGSGGARG
Ga0184624_101328793	3300018073	Groundwater Sediment	MTMMTAAWKRIRIGAVAAVALLACTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLGPKG
Ga0184628_100511753	3300018083	Groundwater Sediment	MTMMTAAWKRIRMALFAAMALVACTGTALAQEFEKVDNIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLGPKG
Ga0184628_100883101	3300018083	Groundwater Sediment	MMMTMSAAWKRIRTAALAAVVLVSWSGAALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILTYVVIVAAGLKRVNQEIAELKSKVDRAGPRP
Ga0190271_100034608	3300018481	Soil	MTTMTAAWKRIGIALAAAVALVAWTGTALAQEFEKIENIPKQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQEIADLKRRVDRTGPRG
Ga0173482_100206933	3300019361	Soil	MTTIATIAMIGRWMRRAVLAMAVLAVSAAPALAQQFEKVDRIQREEIPAARFVAIAYGIIWLAILTYVLFVAGGLRRVNDEIADLKRRLRSKE
Ga0173482_100295893	3300019361	Soil	MKTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRLGSRG
Ga0173479_101038351	3300019362	Soil	MKTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRL
Ga0222622_100862393	3300022756	Groundwater Sediment	MKKALKVVQRAVLAAVVLALSSGAALAQQFEKVENIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRKLGSGGGVGSKG
Ga0222622_102008802	3300022756	Groundwater Sediment	MTTMTAAWKRIRIALFAAVALVAWAGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKVDRTGLKG
Ga0247672_10044273	3300024187	Soil	MTKAWRFMRNAVLAVVALAAWSGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLTYVVFVAAGMRRVDQQIADLKRRLGNVGNVGSKG
Ga0247666_11039792	3300024323	Soil	MTKAWRFMRNAVLAVVALAAWSGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLTYVVFVAAGMRRVDQQIADLK
Ga0207697_102915622	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTKTSIRQWIRGAVLTAVALAAWSGTALAQEFEKIENIPKQEIPAGRFVSIAYGIIWVAVLTYVVIVAGGVKRVSQQIADLKRRLGSKG
Ga0207680_101811733	3300025903	Switchgrass Rhizosphere	KTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRLGSRG
Ga0207707_103895442	3300025912	Corn Rhizosphere	MNTTTTVWKRIRSGLLAVVALAALSGTALAQQFEKIENIPRQDIPAGRFVSIAYGIIWLAILSYVVFVAAGVKRVNQEMAELRRKVDRVGPKA
Ga0207694_117845222	3300025924	Corn Rhizosphere	MNTTTAIWKRIRSGLLAVVALAAWSGTALAQQFEKIENIPKQDIPAGRFVSIAYGIIWLAILSYVVFVAAGVKRVNQEIAELRRKVDRAGPKA
Ga0207650_101468333	3300025925	Switchgrass Rhizosphere	MTRTTTTTMTATWKRIRTAALAVIALVSWSGAALAQQFEKVENLPRQEVPAGRFVAIAYGIIWLAVLAYIVIVAAGIKRVNQEIADLKRKVDRHGPKA
Ga0207659_107274682	3300025926	Miscanthus Rhizosphere	MTLMTAAWKRIRMALFAATALVALTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLGPKG
Ga0207700_120039051	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	TAVWNRIRIVSLAAAALLAWSGTALAQQFEKVENIPRQEIPAGRFVSIAYGIIWLAILSYVVIVAAGVKRVNQEIAELKRKVDRQGSKS
Ga0207701_100643864	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRIGSRG
Ga0207701_101816133	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKTILTRAWKRTRVAILSLIALASLSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWMAILAYVVIVASNIKRANQEIAELKRKLGPKP
Ga0207644_113042232	3300025931	Switchgrass Rhizosphere	MKTAWKMIQRTVLAAVVLVAATLMTSASALAQQFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLNRVNQEIADLKRRLGSKG
Ga0207670_104790193	3300025936	Switchgrass Rhizosphere	KTILTRAWKRTRVAILSLIALASLSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWMAILAYVVIVASNIKRANQEIAELKRKLGPKP
Ga0207669_118198982	3300025937	Miscanthus Rhizosphere	MTMMTAALKRIRSALFAVAMLAVWSGTALAQEFEKVENIPKQEIPAGRFVSIAYGIIWLAILAYVVMVAAGVKRVNQEIAELKRKLGPKG
Ga0207691_101999201	3300025940	Miscanthus Rhizosphere	MKTAWNVIRGAALAVVVLVASSGAALAQEFEKIENIPKQDIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQ
Ga0207661_100111324	3300025944	Corn Rhizosphere	MKTAWNVIRRATLAVVVLAASSGVALAQQFEKVTNIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLNRVNQEIADLKRRLGSKG
Ga0207661_110684022	3300025944	Corn Rhizosphere	MNTTTAIWKRIRSGLLAVVALAALSGTALAQQFEKIENIPRQDIPAGRFVSIAYGIIWLAILSYVVFVAAGVKRVNQEIAELRRKVDRAGGGGGGSKA
Ga0207651_107082793	3300025960	Switchgrass Rhizosphere	GKMKTILTRAWKRTRVAILSLIALASLSGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWMAILAYVVIVASNIKRANQEIAELKRKLGPKP
Ga0207658_100863861	3300025986	Switchgrass Rhizosphere	FAAVVLVASSAPALAQQFEKVQNIPKQEVPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRLGSRG
Ga0207658_105110752	3300025986	Switchgrass Rhizosphere	MTTTIGRWMRRAVLATALLAVSAAPALAQQFEKVERIQREEIPAARFVAIAYGIIWIAILTYVVVVAGGLRRVNDEIADLKRRLRSKG
Ga0207658_113708461	3300025986	Switchgrass Rhizosphere	MNMKRKTALKVIRTAALAAVVLAASAGAALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEI
Ga0207702_124489922	3300026078	Corn Rhizosphere	MKTAWKMIQRTVLAAVVLVAAKLMTSASALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLIVAGGLKRVNHEIADLKRRLGSGGDGSRS
Ga0207674_108261022	3300026116	Corn Rhizosphere	MTMMTAAWKRIRIALFAAVALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGLKRVNQEIADVKRQLGPKG
Ga0209998_100416833	3300027717	Arabidopsis Thaliana Rhizosphere	MTMTSIRQWIRGAVLTAVALAAWSGTALAQEFEKIENIPKQEIPAGRFVSIAYGIIWVAVLTYVVIVAGGVKRVSQQIADLKRRLGSKG
Ga0209465_100189173	3300027874	Tropical Forest Soil	MITAIARPVRRFLFAAAVLVAWSGTALAQQFEKVENIPKQEIPAGRFVSIAYGIIWLAILAYVVIVAAGVKRVNQEIADLKRKVDRAGPKG
Ga0207428_100409632	3300027907	Populus Rhizosphere	MTTMTAAWKRIRIAAVAAMAVVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKVDRTGLKG
Ga0307280_100056884	3300028768	Soil	MKTGLKVVQGAVLAAVVLALSSGTALAQQFEKIENIPKQGIPAGRFVGIAYGIIWLAVLTYVVLVAGGLKRVNQEIADLKRKVGAGSGASRG
Ga0307503_100683053	3300028802	Soil	MMMRTMSAARKRIRTAAFAAVVLVSWSGAALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILTYVVIVAAGLRRVNQEIAELKSKVDRAGPRP
Ga0307506_103241571	3300031366	Soil	MKTALKVVQRAALAAVVLAVSSGAALAQQFEKVENIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRKVDSQGSGDSRG
Ga0310887_100462323	3300031547	Soil	MTKTSIRQWIRGAVLTAVALAAWSGTALAQEFEKIENIPKQEIPAGRFVSIAYGIIWVAVLTYVVIVAGGVKRVSQQIADLKRRLGS
Ga0310892_107288802	3300031858	Soil	MTTMTTAWKRIRIALFAAMALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRQLGPKG
Ga0310899_104540902	3300032017	Soil	MTTMTTAWKRIRIALFAAMALVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGIKRVNQEIADVKRQLGPKG
Ga0308173_121726661	3300032074	Soil	MKTAWKMIPRTVLAAVVLVTATLMTSASALAQQFEKIENIPKQEIPAGRFVGIAYGIIWLAVLTYVLFVAGGLKRVNQEIADLKRRLGSGGDGSRS
Ga0310890_114651422	3300032075	Soil	MTTMTAAWKRIQIAAVAALAVVAWTGTALAQEFEKVENIPRQEIPAGRFVSIAYGIIWLAVLAYVVMVAAGVKRVNQELADLKRKVDRTGLKG
Ga0307415_1013540252	3300032126	Rhizosphere	MTMTTTNAPTWKRIRTAVLALVMLASSAGVALAQQFEKVENLPRQEIPAGRFVAIAYGIIWLAILTYVVLVASGVKRVNQEIADLKRKVDRSGSKL
Ga0364927_0095952_408_689	3300034148	Sediment	MTMMTAAWKRIRSALLAVAVLAAWTGTALAQEFEKVENIPKQDIPAGRFVSIAYGIIWLAVLAYVVMVATGVKRVNQEIADLKRKVDRTGPKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F056096

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences