Metagenome / Metatranscriptome Family F056092

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056092
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	44 residues
Representative Sequence	SAATEQQIASLGELTTTSQHLSVAAAKLSETIQRFNVNGKA
Number of Associated Samples	112
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.74 %
% of genes near scaffold ends (potentially truncated)	95.65 %
% of genes from short scaffolds (< 2000 bps)	78.99 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.536 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (27.536 % of family members)
Environment Ontology (ENVO)	Unclassified (63.768 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.565 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.52% β-sheet: 0.00% Coil/Unstructured: 43.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF02678	Pirin	15.33
PF01979	Amidohydro_1	12.41
PF13442	Cytochrome_CBB3	6.57
PF05726	Pirin_C	5.84
PF00210	Ferritin	4.38
PF00196	GerE	2.19
PF14417	MEDS	2.19
PF00135	COesterase	1.46
PF04542	Sigma70_r2	1.46
PF08281	Sigma70_r4_2	1.46
PF00033	Cytochrome_B	0.73
PF01292	Ni_hydr_CYTB	0.73
PF00174	Oxidored_molyb	0.73
PF00080	Sod_Cu	0.73
PF00005	ABC_tran	0.73
PF12102	MrcB_N	0.73
PF12704	MacB_PCD	0.73
PF00015	MCPsignal	0.73
PF03466	LysR_substrate	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	21.17
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.46
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.46
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.46
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.46
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	1.46
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.46
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	0.73
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.73
COG2032	Cu/Zn superoxide dismutase	Inorganic ion transport and metabolism [P]	0.73
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.73
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.73
COG3038	Cytochrome b561	Energy production and conversion [C]	0.73
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.73
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.73
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.54 %
Unclassified	root	N/A	22.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.54 %
Unclassified	root	N/A	22.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.54 %
Unclassified	root	N/A	22.46 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	27.54 %
Unclassified	root	N/A	22.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	27.54 %
Unclassified	root	N/A	22.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.45 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	25.36 %
Unclassified	root	N/A	22.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.45 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.72 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.72 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	24.64 %
Unclassified	root	N/A	22.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.45 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.72 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.72 %
Gemmatimonadetes bacterium 13_2_20CM_70_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_2_20CM_70_9	0.72 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	24.64 %
Unclassified	root	N/A	22.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.45 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.72 %
Gemmatimonadetes bacterium 13_2_20CM_70_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_2_20CM_70_9	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10060301	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300002560\|JGI25383J37093_10101897	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	837	Open in IMG/M
3300002560\|JGI25383J37093_10101897	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	837	Open in IMG/M
3300002560\|JGI25383J37093_10106233	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300002560\|JGI25383J37093_10208958	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300002561\|JGI25384J37096_10003048	All Organisms → cellular organisms → Bacteria	5884	Open in IMG/M
3300002562\|JGI25382J37095_10004128	All Organisms → cellular organisms → Bacteria	4996	Open in IMG/M
3300002562\|JGI25382J37095_10272330	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300005171\|Ga0066677_10567880	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300005172\|Ga0066683_10452139	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	787	Open in IMG/M
3300005174\|Ga0066680_10061978	All Organisms → cellular organisms → Bacteria	2223	Open in IMG/M
3300005174\|Ga0066680_10265552	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300005177\|Ga0066690_10122147	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300005178\|Ga0066688_10516417	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005178\|Ga0066688_11026920	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005179\|Ga0066684_10362604	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	970	Open in IMG/M
3300005179\|Ga0066684_11109809	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	505	Open in IMG/M
3300005180\|Ga0066685_10090983	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2026	Open in IMG/M
3300005180\|Ga0066685_11008615	Not Available	549	Open in IMG/M
3300005186\|Ga0066676_11065314	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005187\|Ga0066675_10531009	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300005440\|Ga0070705_101300926	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005444\|Ga0070694_101906883	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005446\|Ga0066686_10725415	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300005536\|Ga0070697_100036996	All Organisms → cellular organisms → Bacteria	3943	Open in IMG/M
3300005553\|Ga0066695_10783568	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300005554\|Ga0066661_10935922	Not Available	507	Open in IMG/M
3300005558\|Ga0066698_10465098	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300005560\|Ga0066670_10161832	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300005574\|Ga0066694_10578715	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	523	Open in IMG/M
3300005586\|Ga0066691_10599112	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300005586\|Ga0066691_10818090	Not Available	549	Open in IMG/M
3300005587\|Ga0066654_10531277	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300005598\|Ga0066706_10124462	All Organisms → cellular organisms → Bacteria	1907	Open in IMG/M
3300006031\|Ga0066651_10051829	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300006163\|Ga0070715_10872185	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300006796\|Ga0066665_11426703	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300006796\|Ga0066665_11681149	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300006797\|Ga0066659_11210194	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300006804\|Ga0079221_10059346	All Organisms → cellular organisms → Bacteria	1746	Open in IMG/M
3300006847\|Ga0075431_101107784	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300006854\|Ga0075425_100084501	All Organisms → cellular organisms → Bacteria	3592	Open in IMG/M
3300006914\|Ga0075436_100047486	All Organisms → cellular organisms → Bacteria	2961	Open in IMG/M
3300009012\|Ga0066710_102309427	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	782	Open in IMG/M
3300009012\|Ga0066710_104797501	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_2_20CM_70_9	506	Open in IMG/M
3300009038\|Ga0099829_10103710	Not Available	2216	Open in IMG/M
3300009089\|Ga0099828_11996129	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	507	Open in IMG/M
3300009089\|Ga0099828_12000882	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	507	Open in IMG/M
3300009090\|Ga0099827_10043361	All Organisms → cellular organisms → Bacteria	3342	Open in IMG/M
3300009137\|Ga0066709_102996915	Not Available	620	Open in IMG/M
3300009143\|Ga0099792_10852515	Not Available	600	Open in IMG/M
3300009147\|Ga0114129_11913343	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300010085\|Ga0127445_1045427	Not Available	747	Open in IMG/M
3300010117\|Ga0127449_1114416	Not Available	570	Open in IMG/M
3300010124\|Ga0127498_1154784	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300010301\|Ga0134070_10022135	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2073	Open in IMG/M
3300010304\|Ga0134088_10027446	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2552	Open in IMG/M
3300010304\|Ga0134088_10364828	Not Available	702	Open in IMG/M
3300010320\|Ga0134109_10385959	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300010321\|Ga0134067_10068554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1170	Open in IMG/M
3300010321\|Ga0134067_10300324	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	619	Open in IMG/M
3300010335\|Ga0134063_10003826	All Organisms → cellular organisms → Bacteria	5471	Open in IMG/M
3300010335\|Ga0134063_10012889	All Organisms → cellular organisms → Bacteria	3315	Open in IMG/M
3300010335\|Ga0134063_10519782	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	598	Open in IMG/M
3300010336\|Ga0134071_10048246	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1924	Open in IMG/M
3300010336\|Ga0134071_10052387	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1854	Open in IMG/M
3300010364\|Ga0134066_10138327	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	752	Open in IMG/M
3300010396\|Ga0134126_10838341	Not Available	1037	Open in IMG/M
3300011269\|Ga0137392_10119114	Not Available	2103	Open in IMG/M
3300011270\|Ga0137391_10475668	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1060	Open in IMG/M
3300011414\|Ga0137442_1130660	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300012199\|Ga0137383_11029328	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	599	Open in IMG/M
3300012201\|Ga0137365_10092006	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300012201\|Ga0137365_10579040	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	823	Open in IMG/M
3300012203\|Ga0137399_11650535	Not Available	529	Open in IMG/M
3300012204\|Ga0137374_11099840	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	566	Open in IMG/M
3300012349\|Ga0137387_10089120	All Organisms → cellular organisms → Bacteria → Proteobacteria	2134	Open in IMG/M
3300012353\|Ga0137367_10602145	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	769	Open in IMG/M
3300012357\|Ga0137384_10789138	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300012359\|Ga0137385_11560010	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	524	Open in IMG/M
3300012360\|Ga0137375_10517926	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1011	Open in IMG/M
3300012362\|Ga0137361_11521279	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	591	Open in IMG/M
3300012363\|Ga0137390_10478445	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1220	Open in IMG/M
3300012376\|Ga0134032_1131932	Not Available	634	Open in IMG/M
3300012407\|Ga0134050_1377285	Not Available	611	Open in IMG/M
3300012685\|Ga0137397_10835479	Not Available	683	Open in IMG/M
3300012917\|Ga0137395_10992054	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012918\|Ga0137396_10088552	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300012922\|Ga0137394_10144308	Not Available	2023	Open in IMG/M
3300012925\|Ga0137419_10488156	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300012929\|Ga0137404_10814773	Not Available	848	Open in IMG/M
3300012930\|Ga0137407_11192747	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300012972\|Ga0134077_10479341	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	548	Open in IMG/M
3300012976\|Ga0134076_10479519	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300014154\|Ga0134075_10175673	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300014154\|Ga0134075_10301071	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	698	Open in IMG/M
3300014157\|Ga0134078_10502980	Not Available	564	Open in IMG/M
3300015359\|Ga0134085_10396420	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	619	Open in IMG/M
3300017656\|Ga0134112_10035352	All Organisms → cellular organisms → Bacteria	1774	Open in IMG/M
3300017656\|Ga0134112_10068795	Not Available	1303	Open in IMG/M
3300017656\|Ga0134112_10110440	Not Available	1038	Open in IMG/M
3300017657\|Ga0134074_1029045	All Organisms → cellular organisms → Bacteria	1842	Open in IMG/M
3300018431\|Ga0066655_10724878	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300018433\|Ga0066667_10844370	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300018468\|Ga0066662_10781836	Not Available	923	Open in IMG/M
3300018482\|Ga0066669_11614356	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300018482\|Ga0066669_12032805	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300025905\|Ga0207685_10248550	Not Available	859	Open in IMG/M
3300025905\|Ga0207685_10367066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	730	Open in IMG/M
3300026277\|Ga0209350_1034270	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1506	Open in IMG/M
3300026296\|Ga0209235_1000208	All Organisms → cellular organisms → Bacteria	28233	Open in IMG/M
3300026296\|Ga0209235_1208294	Not Available	656	Open in IMG/M
3300026296\|Ga0209235_1259946	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	534	Open in IMG/M
3300026297\|Ga0209237_1159638	Not Available	847	Open in IMG/M
3300026301\|Ga0209238_1017369	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300026313\|Ga0209761_1152290	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1089	Open in IMG/M
3300026317\|Ga0209154_1286222	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300026318\|Ga0209471_1010597	All Organisms → cellular organisms → Bacteria	4825	Open in IMG/M
3300026324\|Ga0209470_1020713	All Organisms → cellular organisms → Bacteria	3556	Open in IMG/M
3300026325\|Ga0209152_10239014	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	676	Open in IMG/M
3300026330\|Ga0209473_1004939	All Organisms → cellular organisms → Bacteria	7067	Open in IMG/M
3300026331\|Ga0209267_1005004	All Organisms → cellular organisms → Bacteria	7950	Open in IMG/M
3300026334\|Ga0209377_1256014	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300026538\|Ga0209056_10007563	All Organisms → cellular organisms → Bacteria	11183	Open in IMG/M
3300026540\|Ga0209376_1094479	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300026542\|Ga0209805_1112263	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1294	Open in IMG/M
3300027181\|Ga0208997_1065332	Not Available	544	Open in IMG/M
3300027383\|Ga0209213_1042325	Not Available	861	Open in IMG/M
3300027882\|Ga0209590_10803988	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	597	Open in IMG/M
3300027886\|Ga0209486_10921804	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300028065\|Ga0247685_1042273	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	560	Open in IMG/M
3300028536\|Ga0137415_10400200	Not Available	1177	Open in IMG/M
3300031152\|Ga0307501_10037021	Not Available	1032	Open in IMG/M
3300031720\|Ga0307469_11028966	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	770	Open in IMG/M
3300031962\|Ga0307479_12091194	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.10%
Host-Associated	Host-Associated	2.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.38%
Plants	Host-Associated → Plants	2.90%
Aquatic	Environmental → Aquatic	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.90%
Sediment	Environmental → Aquatic → Sediment	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.13%
Loam	Environmental → Terrestrial → Soil → Loam	7.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	43.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	27.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	20.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.45%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010085	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010117	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010124	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012407	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027181	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028065	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK26	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100603011	3300001661	Forest Soil	AQGAEQTSAATEEQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKG*
JGI25383J37093_101018972	3300002560	Grasslands Soil	VAGIADSAAHGAEQTSGATELQIASLGDLTTTEQHLSVAAAKLTETIQRFTVDGKA*
JGI25383J37093_101018973	3300002560	Grasslands Soil	LGELTTTSQQLSVAAARLTETIQRFNVNGAKLPPRNSPASP*
JGI25383J37093_101062331	3300002560	Grasslands Soil	AATEQQIASLGELTMTSQHLSVAAAKLSETIQRFNVNGKA*
JGI25383J37093_102089582	3300002560	Grasslands Soil	SAAQGAEQTSAATAEQIASLDELTTTSQQLSAAATKLTETIQRFNVNGKA*
JGI25384J37096_100030484	3300002561	Grasslands Soil	MEEVAGIADSAAHGAEQTSGATELQIASLGDLTTTEQHLSVAAAKLTETIQRFTVDGKA*
JGI25382J37095_100041281	3300002562	Grasslands Soil	QGAEQTSAATEEQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKA*
JGI25382J37095_102723301	3300002562	Grasslands Soil	TGARQTSAATAQQIASLGELTTTSQHLSDAAATLSQTIRRFRVKGNGL*
Ga0066677_105678802	3300005171	Soil	EVAGIADSAAQGAEQTSAVTEQQIASLGELTTTSQHLSVAAARLTETMQRFTLNGKA*
Ga0066683_104521393	3300005172	Soil	ATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKAGRSA*
Ga0066680_100619783	3300005174	Soil	AATEEQIASLGELTTTSQHLSVAAAKLTETIQRFRVNGKS*
Ga0066680_102655521	3300005174	Soil	AATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKE*
Ga0066690_101221473	3300005177	Soil	AAQGAEQTSAATEQQIASLGELTTTSQHLSVAAARLTETMQRFNVNGKA*
Ga0066688_105164171	3300005178	Soil	AETAAQGAERTSAATEQQIASLGELTTTSQQLAVAAAKLTETIQQFNVNGASLPTPE*
Ga0066688_110269202	3300005178	Soil	AATAQQIAALDELTTTSQQLSAAAAKLTETIQRFVVNGKA*
Ga0066684_103626041	3300005179	Soil	ERQIASLGELTTTSQQLAVAAARLTETMQRFNVNGASLPAPE*
Ga0066684_111098091	3300005179	Soil	ERQIASLGELTTTSQQLAVAAARLTETMQRFNVNGASLPASE*
Ga0066685_100909833	3300005180	Soil	TAAQGAEQTSAATEEQIASLGELTTTSQHLSVAAAKLTETIRRFTVNGKP*
Ga0066685_110086152	3300005180	Soil	AATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKAGRSA*
Ga0066676_110653141	3300005186	Soil	AEQTSAATEEQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKA*
Ga0066675_105310092	3300005187	Soil	ATEQQIASLGELTTTSQQLAVAAAKLTETIQQFNVNGASLPTPE*
Ga0070705_1013009261	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GAQQTSAATEEQIASLGELTATSQHLSNAAAKLTQTIQRFTVNGAGASH*
Ga0070694_1019068831	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SAATSEQIASLGELTATSQHLSNAAAKLAETIQRFTVNGAGGPVH*
Ga0066686_107254153	3300005446	Soil	AATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKA*
Ga0070697_1000369965	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	AAQGAEQTSAATEEQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKG*
Ga0066695_107835681	3300005553	Soil	QQTSAATAQQIVSLSELTTTSQQLSDAAAALARTIQRFRSD*
Ga0066661_109359221	3300005554	Soil	FGELTTTSQHLSVAAAKLSETIQRFHVNGEGSDSPAPQ*
Ga0066707_100064861	3300005556	Soil	SLGELTTTSQHLSVAAARLTETMQRFNVNGLATARGR*
Ga0066698_104650981	3300005558	Soil	TAAQGAEQTSAATEQQIASLGELTMTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0066700_105153512	3300005559	Soil	AGIAETAAQGAEQTSAATAQQIASLSELTTTTQHLSVAAAKLTETIEHFTVNGKA*
Ga0066670_101618323	3300005560	Soil	AERTSAATEQQIASLGELTTTSQQLAVAAAKLTETIQQFNVNGASLPTPE*
Ga0066694_105787152	3300005574	Soil	QIASLGELTTTSQQLAVAAAKLTETIQQFNVNGASLPTPE*
Ga0066691_105991122	3300005586	Soil	SSFGELTTTSQHLSVAAAKLSETIQRFHVNGEGAASPPVQ*
Ga0066691_108180902	3300005586	Soil	QQIASLGELTTTSQHLSVAAAKLTETTQRFNVNGTA*
Ga0066654_105312772	3300005587	Soil	QMEEVAGIADSAAQGAEQTSAVTEQQIASLGELTTTSQHLSVAAARLTETMQRFTLNGKA
Ga0066706_101244621	3300005598	Soil	AERTSAATEQQIASLGELTTTSQQLAVAAAKLTQTIHQFNVNGASLPTPE*
Ga0066651_100518293	3300006031	Soil	TAQQIASLNALTATSQHISDAAATLSETIQRFRA*
Ga0070715_108721852	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	ETAAQGAEQTSAATEQQIASLSELTTTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0066665_114267032	3300006796	Soil	SAATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKA*
Ga0066665_116811493	3300006796	Soil	AATEQQIASLGELTTTSQHLSVAAARLTETMQRFTVNGKA*
Ga0066659_112101941	3300006797	Soil	GAQRTSAATEQQIASLGELTTTSQQLAVAAAKLPETIQQFNVNGASLPTPE*
Ga0079221_100593463	3300006804	Agricultural Soil	QQIASLGELSMTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0075431_1011077842	3300006847	Populus Rhizosphere	QIASLGELTTTSQHLSTAASTLTETIQRFNVNGSR*
Ga0075425_1000845015	3300006854	Populus Rhizosphere	TSAATAKQMSSLNDLTTTSQHLSDAAAALSETIQRFRA*
Ga0075436_1000474861	3300006914	Populus Rhizosphere	EQASAATQQQIASLGELTTTSQQLSVAAAKLSETIQRFSVNGGSSPPTR*
Ga0066710_1023094273	3300009012	Grasslands Soil	SAATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKA
Ga0066710_1047975012	3300009012	Grasslands Soil	EQTSAATEQQIASLSELTTTTQHLSVAVAKLTETIERFNVNGKA
Ga0099829_101037101	3300009038	Vadose Zone Soil	QGAEQTSAATQQQIASLGELTTTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0099828_119961292	3300009089	Vadose Zone Soil	AQGAQQTTAATQQQIASLGELTATSQHLSVAAAKLTETIQRFTVNGKSKP*
Ga0099828_120008822	3300009089	Vadose Zone Soil	AQGAQQTTAATQQQIASLGELTATSQHLSVAAAKLTETIQRFTVNGKSGP*
Ga0099827_100433611	3300009090	Vadose Zone Soil	TEEQIASLSELTTTSQHLSVAAAKLTETIQRFRVNGKS*
Ga0066709_1029969153	3300009137	Grasslands Soil	QASAATAEQIASLGELTATSQHLSVAAAKLTETIRRFNVDGRA*
Ga0099792_108525151	3300009143	Vadose Zone Soil	SAATEQQIASLGELTMTSQHLSVAAAKLTETIQRFNVNGKA*
Ga0114129_119133431	3300009147	Populus Rhizosphere	AAQGAEQTSAATEQQIASLGELTTTSQHLSVAAAQLSETIQRFNVNGKA*
Ga0127445_10454271	3300010085	Grasslands Soil	IASLGELTMTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0127449_11144162	3300010117	Grasslands Soil	AEQTSAATEQQIASLGELTMTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0127498_11547841	3300010124	Grasslands Soil	EEQIASLGELTTTSQHLSVAAAKLTETIQRFRVNGKS*
Ga0134070_100221351	3300010301	Grasslands Soil	TAQQIASLSELTTTSEHLSDAAATLSVTIQRFRIKANGG*
Ga0134088_100274464	3300010304	Grasslands Soil	GAEQTSAATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKA*
Ga0134088_103648281	3300010304	Grasslands Soil	QQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKAGRSA*
Ga0134088_105545401	3300010304	Grasslands Soil	EQQIASLGELTTTSQHLSVAAARLTETMQRFNVNGLATARGR*
Ga0134109_103859592	3300010320	Grasslands Soil	AATEEQIASLSELTTTSQHLSVAAAKLTETIQRFRVNGKS*
Ga0134067_100685543	3300010321	Grasslands Soil	IASLGELTTTSQQLAVAAARLTETMQRFNVNGASLPAPE*
Ga0134067_103003241	3300010321	Grasslands Soil	QGAEQTSAATERQIASLGELSTTSQQLAVAAAKLIETIQHFNVNGASLPAAE*
Ga0134063_100038267	3300010335	Grasslands Soil	IASLGELTTTSQHLSVAAARLTETIQRFNVNGKA*
Ga0134063_100128895	3300010335	Grasslands Soil	QQIASLGQLTTTSQHLSVAAAKLTETIQRFHVNGKA*
Ga0134063_105197821	3300010335	Grasslands Soil	HGAEQTSAATEQQIASLGELTTTSQQLAVAAARLTETIQRFNVDGAKLPPPQ*
Ga0134071_100482461	3300010336	Grasslands Soil	ASLSELTTTTQHLSVAAAKLTETIERFNVNGKAGRSA*
Ga0134071_100523873	3300010336	Grasslands Soil	AQQIASLSELTSTSQRLSDAATVLAQTIKRFRISGNGGGAP*
Ga0134066_101383271	3300010364	Grasslands Soil	VCSAPCIAETAAQGAEQTSAATERQIASLGELTTTSQQLAVAAAKLTETIQQFNVNGASLPTPE*
Ga0134126_108383412	3300010396	Terrestrial Soil	GAEQTSAATEQQIASLSELTTTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0137392_101191141	3300011269	Vadose Zone Soil	QTSAATQQQIASLGELTTTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0137391_104756681	3300011270	Vadose Zone Soil	QIASLGELTTTSQHLAVAAAKLAQTIQRFSANGGRLPPPQ*
Ga0137442_11306601	3300011414	Soil	TEEQIASLGELTATSQHLSVAASKLAQTIKRFTVNGAGPGAKH*
Ga0137383_110293282	3300012199	Vadose Zone Soil	QTSAATAQQILSLNELTTTSQHLSDAAAALSETIQRFRA*
Ga0137365_100920063	3300012201	Vadose Zone Soil	AEQTSAATEQQIAALGELTTTSQQLSVAAARLTETIQRFNVDGRT*
Ga0137365_105790401	3300012201	Vadose Zone Soil	AEQTSAATEQQIAALGELTTTSQQLSVAAARLTETIQRFNVNGAKLPPPK*
Ga0137399_116505352	3300012203	Vadose Zone Soil	AATEQQIASLSELTTTSQHLSVAAAKLTETIQRFNVSGKA*
Ga0137374_110998402	3300012204	Vadose Zone Soil	EQASAATEQQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKE*
Ga0137387_100891202	3300012349	Vadose Zone Soil	AAHGAEQTSAATEQQIASLGELTTTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0137367_106021451	3300012353	Vadose Zone Soil	AAQGAEQASAATQEQIASLGELTATSQHLSVAAAKLTETIQRFHVNGTA*
Ga0137384_107891382	3300012357	Vadose Zone Soil	AEQTSAATEQQIASLGELTTTSQHLSVAAAKLTETIQRFKVNGKA*
Ga0137385_115600101	3300012359	Vadose Zone Soil	SAATEQQIASLGELTTTSQHLSVAAAKLSETIQRFNVNGKA*
Ga0137375_105179261	3300012360	Vadose Zone Soil	EQIASLGELTATSQHLSVAAAKLTETIQRFNVNGTA*
Ga0137361_115212792	3300012362	Vadose Zone Soil	AQQIASLSELTTTSQHLSDAAATLTETIRRFRINGKSG*
Ga0137390_104784453	3300012363	Vadose Zone Soil	AATEQQIASLGELTTTSQHLAVAAAKLAQTIQRFSANGGRLPPPQ*
Ga0134032_11319321	3300012376	Grasslands Soil	EQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKA*
Ga0134050_13772851	3300012407	Grasslands Soil	QQIASLGELTMTSQHLAVAAAKLSETIQRFNVNGKA*
Ga0137397_108354792	3300012685	Vadose Zone Soil	QIASLSELTTTSQHLSVAAAKLSETIQRFNVNGKT*
Ga0137395_109920541	3300012917	Vadose Zone Soil	AATERQIASLGELTAVSQQLSATATALTETIRRFRTNGAA*
Ga0137396_100885521	3300012918	Vadose Zone Soil	AATAEQIASLDELSTTSQHLSTAAAKLTETIQRFVVNGKT*
Ga0137394_101443084	3300012922	Vadose Zone Soil	QIASLSELTTTSQHLSVAAAKLTETIQRFNVNGKT*
Ga0137419_104881561	3300012925	Vadose Zone Soil	TATEGAQQTSAATEEQIASLGELTTTSQHLSVAAAKLTETIQRFRVNGKS*
Ga0137404_108147731	3300012929	Vadose Zone Soil	ETAAQGAEQTSAATEQQIASLGELTTTSQHLSVAAAKLSETIQRFNVNGKV*
Ga0137407_111927471	3300012930	Vadose Zone Soil	HIAAGAADGAQQTSAATQEQIASLGELTATSQHLSNAAAKLAQTIQRFTVNGAGASH*
Ga0134077_104793411	3300012972	Grasslands Soil	IASLGELTTTTQHLSVAAAKLTETIERFNVNGKAGRSA*
Ga0134076_104795191	3300012976	Grasslands Soil	ATAQQIASLSELTSTSQRLSDAATVLAQTIKRFRISGNGGGAP*
Ga0134075_101756731	3300014154	Grasslands Soil	GAEQASAATAQQIAALDELTTTSQHLSAAAAKLTETIQQFVVNGKA*
Ga0134075_103010712	3300014154	Grasslands Soil	SAATEQQIASLAQLTTTSQQLSVAAAKLAQTIQRFNVNGGSSPAPQ*
Ga0134078_105029802	3300014157	Grasslands Soil	AAQGAEQTSAATEQQIASLGEFTTTSQHLSVAAAKLIETIQLFNVNGKA*
Ga0134085_103964201	3300015359	Grasslands Soil	ASAATAEQITSLGELTATSRHLSVGAAQLAETIRPFNVDGRA*
Ga0134112_100353523	3300017656	Grasslands Soil	LGELTTTTQHLSVAAAKLTETIQRFNVDGAKSPPSQ
Ga0134112_100687953	3300017656	Grasslands Soil	SAATEQQIASLGELTTTSQHLSVAAAKLSETIQRFNVNGKA
Ga0134112_101104402	3300017656	Grasslands Soil	AATQQQIASLGELTTTSQQLSVAAAKLSETIQRFNLNGKA
Ga0134074_10290451	3300017657	Grasslands Soil	ASLSDLTTTSQHLSDAAATLSQTIQRFRVSGNGLPASE
Ga0066655_107248782	3300018431	Grasslands Soil	ATAQQIAALDELTTTSQHLSAAAAKLTETIQRFVVNGKA
Ga0066667_108443701	3300018433	Grasslands Soil	CGSIGELTTTPQHLSVAAAKLSKTIQRCHVNGEGSDSPAPQ
Ga0066662_107818361	3300018468	Grasslands Soil	TEEQIASLGELTTTSHHLSVAAAKLTETIQRFTVNGKA
Ga0066669_116143561	3300018482	Grasslands Soil	AATAQQIASLIELTATSEHLSDAAATLSETIQRFRA
Ga0066669_120328051	3300018482	Grasslands Soil	ATEQQIASLGELTTTSQQLAVAAAKLTETIQQFNVNGASLPTPE
Ga0207685_102485502	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	ETAAQGAEQTSAATEQQIASLSELTTTSQHLSVAAAKLSETIQRFNVNGKA
Ga0207685_103670662	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	GAEQTSAATEQQIASLGELTMTSQHLSVAAAKLSETIQRFHVNGKA
Ga0209350_10342703	3300026277	Grasslands Soil	AEQTSAATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKE
Ga0209235_10002083	3300026296	Grasslands Soil	MEEVAGIADSAAHGAEQTSGATELQIASLGDLTTTEQHLSVAAAKLTETIQRFTVDGKA
Ga0209235_12082941	3300026296	Grasslands Soil	QTSAATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKA
Ga0209235_12599461	3300026296	Grasslands Soil	AHGAEQTSAATEQQIASLGQLTTTSQHLSVAAAKLTETIQRFHVNGAKLPPPK
Ga0209237_11596382	3300026297	Grasslands Soil	QQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKA
Ga0209238_10173691	3300026301	Grasslands Soil	QIASLGELTTTSQHLSVAAARLTETMQRFTLNGKA
Ga0209761_11522901	3300026313	Grasslands Soil	QTSAATEQQIASLSELTTTTQHLSVAAAKLTETIERFNVNGKE
Ga0209154_12862221	3300026317	Soil	EQTSAATAEQIASLDELTTTSQQLSAAATKLTETIQRFNVNGKA
Ga0209471_10105971	3300026318	Soil	TAQQIASLDELTTTSRHLSAAATKLTETIQRFVVNGKA
Ga0209470_10207131	3300026324	Soil	TEQQIASLGELTMTSQHLSVAAAKLSETIQRFNVNGKA
Ga0209152_102390141	3300026325	Soil	QRQIASLGELSTTSQQLAVAAAKLSETIERFNVNGASLPASE
Ga0209473_10049391	3300026330	Soil	SAATEEQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKA
Ga0209267_100500410	3300026331	Soil	ASLGELTTTSQQLAVAAAKLTETIQQFNVNGASLPTPE
Ga0209377_12560141	3300026334	Soil	AAQGAEQTSAATEQQIASLGELTTTSQHLSVAAARLTETIQRFTVNGKA
Ga0209056_1000756312	3300026538	Soil	AEQTSAATEQQIASLGELTTTSQHLSVAAARLTETMQRFNVNGLATARGR
Ga0209376_10944793	3300026540	Soil	TAAQGAEQTSAATEQQIASLGELTMTSQHLSVAAAKLSETIQRFNVNGKA
Ga0209805_11122633	3300026542	Soil	VRRMDEAAGIAETAAQGAEQTSAATERQIVSLGELSTTSQQLAVAAAKLIETIQHFNVNGASLPAAE
Ga0208997_10653322	3300027181	Forest Soil	DTAAQGAEQTSAATEEQIASLGELTTTSQHLSVAAAKLTETIQRFNVNGKG
Ga0209213_10423252	3300027383	Forest Soil	EQIASLSELTTTSQHLSVAAAKLTETIQRFNVNGKG
Ga0209590_108039881	3300027882	Vadose Zone Soil	EQTSAATEQQIASLSELTATSQQLSVAAAKLTDTIQRFNVNGKA
Ga0209486_109218042	3300027886	Agricultural Soil	MEEVAGIADGAAQGAEQASTATQQQIASLGELATTSRHLSAAAAKLTETIQRLNVDGKV
Ga0247685_10422732	3300028065	Soil	EQASAATQQQIASLGELTTTSQQLSVAAAKLSETIQRFSVNGSSSPPTS
Ga0137415_104002002	3300028536	Vadose Zone Soil	TEQQIASLSELTTTSQHLSVAAAKLSETIQRFNVNGKG
Ga0307501_100370212	3300031152	Soil	TEEQIASLGELTTTSQHLSVAAAKLTETIRRFNVNGKG
Ga0307469_110289662	3300031720	Hardwood Forest Soil	QQIASLGELTTTSQQLSVAAAKLSETIQRFNVNGSSSPPPR
Ga0307479_120911942	3300031962	Hardwood Forest Soil	VATEQQIASLGELTTTSQQLAVAAAKLIETMQRFNVNGASLPASQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056092

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences