Metagenome / Metatranscriptome Family F055983

Overview

Basic Information

• Family ID: F055983
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 138
• Average Sequence Length: 45 residues
• Representative Sequence: STWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
• Number of Associated Samples: 126
• Number of Associated Scaffolds: 138

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.72 %
• % of genes near scaffold ends (potentially truncated): 97.83 %
• % of genes from short scaffolds (< 2000 bps): 93.48 %
• Associated GOLD sequencing projects: 117
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (96.377 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.594 % of family members)
• Environment Ontology (ENVO): Unclassified (22.464 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (42.029 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 30.56%
  Coil/Unstructured: 69.44%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF03972	MmgE_PrpD	18.12
PF08450	SGL	10.14
PF12697	Abhydrolase_6	10.14
PF01875	Memo	7.25
PF02617	ClpS	2.90
PF02771	Acyl-CoA_dh_N	2.17
PF04909	Amidohydro_2	2.17
PF01042	Ribonuc_L-PSP	1.45
PF14015	DUF4231	0.72
PF04828	GFA	0.72

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	18.12
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	10.14
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	10.14
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	7.25
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	2.90
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.17
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.45
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.72
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.72
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.72

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.38 %
Unclassified	root	N/A	3.62 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.38 %
Unclassified	root	N/A	3.62 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.38 %
Unclassified	root	N/A	3.62 %

Level 4

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.26 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %
Unclassified	root	N/A	3.62 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.97 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.45 %
Unclassified	root	N/A	3.62 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.72 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	30.43 %
Unclassified	root	N/A	3.62 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.52 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.52 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.17 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.45 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.72 %
Unclassified	root	N/A	3.62 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.72 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.72 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.52 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.45 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.72 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.72 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.72 %
Unclassified	root	N/A	3.62 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.52 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.45 %
Methylobacterium nodulans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	0.72 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.72 %
Unclassified	root	N/A	3.62 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.72 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.52 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.45 %
Methylobacterium nodulans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	0.72 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.72 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.72 %
Unclassified	root	N/A	3.62 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000597|AF_2010_repII_A1DRAFT_10160468	All Organisms → cellular organisms → Bacteria → Proteobacteria	538
3300000955|JGI1027J12803_109283542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	1856
3300001661|JGI12053J15887_10076572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1847
3300001976|JGI24752J21851_1027495	All Organisms → cellular organisms → Bacteria → Proteobacteria	747
3300003911|JGI25405J52794_10017632	All Organisms → cellular organisms → Bacteria	1420
3300004157|Ga0062590_101354711	All Organisms → cellular organisms → Bacteria → Proteobacteria	705
3300005294|Ga0065705_11050715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	534
3300005332|Ga0066388_101938959	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053
3300005332|Ga0066388_103756278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	775
3300005332|Ga0066388_106324194	All Organisms → cellular organisms → Bacteria → Proteobacteria	597

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.54%
Host-Associated	Host-Associated	22.46%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.35%
Plants	Host-Associated → Plants	22.46%
Terrestrial	Environmental → Terrestrial	73.19%

Category

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.94%
Roots	Host-Associated → Plants → Roots	1.45%
Sediment	Environmental → Aquatic → Sediment	4.35%
Soil	Environmental → Terrestrial → Soil	72.46%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.62%
Loam	Environmental → Terrestrial → Soil → Loam	13.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.45%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.72%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.17%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.17%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.25%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.45%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101604681	3300000597	Forest Soil	ASVTDIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
JGI1027J12803_1092835424	3300000955	Soil	VADVELSTWRLDRDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
JGI12053J15887_100765721	3300001661	Forest Soil	DRDELVLAGPGGAWRFAESDTTTWERIPPSTDPLLLMRQ*
JGI24752J21851_10274951	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	ASVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
JGI25405J52794_100176321	3300003911	Tabebuia Heterophylla Rhizosphere	GLTTWRLDPDGLLLSGNGGRWRFSESDATSWERIPASTDPMVLMRQ*
Ga0062590_1013547112	3300004157	Soil	GLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE*
Ga0065705_110507152	3300005294	Switchgrass Rhizosphere	TFNPSTWRLDRDQLILTGRNGSWRFSESDATVWERVPLTVDPMLLVRQ*
Ga0066388_1019389591	3300005332	Tropical Forest Soil	PGCDPSVADVELSTWQLDSEGLLLTGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0066388_1037562781	3300005332	Tropical Forest Soil	WRIEINELVLVGPGGSWRFAESNDTTWERIPPSADPMVLLRQ*
Ga0066388_1063241941	3300005332	Tropical Forest Soil	PGCDPSVADVELSTWQLDSEGLLLTGRGGSWRFSESDATSWERIPASADPLVLMRQ*
Ga0070659_1019397322	3300005366	Corn Rhizosphere	WRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE*
Ga0070705_1017361631	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GCDASVADVELSTWRLDRDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0070663_1000551554	3300005455	Corn Rhizosphere	SVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
Ga0070698_1020116621	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	DVELSTWRLDRDGLLLTGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0070697_1007250862	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	STWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0066670_101115541	3300005560	Soil	TWQLDSEGLLLTGRGGSWRFSESDATSWERIPASADPLVLMRQ*
Ga0068854_1007273672	3300005578	Corn Rhizosphere	DPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE*
Ga0066905_1006722591	3300005713	Tropical Forest Soil	DGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0066903_1030881142	3300005764	Tropical Forest Soil	TWRIDSNELLLVGRGSTWRFSESDSTTWERIPPSSDPMVLMRQ*
Ga0066903_1062648911	3300005764	Tropical Forest Soil	LLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0066903_1066947202	3300005764	Tropical Forest Soil	DSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0068863_1002708653	3300005841	Switchgrass Rhizosphere	LDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
Ga0081538_100472361	3300005981	Tabebuia Heterophylla Rhizosphere	DGLLLSGNGGRWRFSESDATSWERIPASTDPMVLMRQ*
Ga0075028_1008720521	3300006050	Watersheds	AAAINGLGLTAWRLEMNDLLLVGRGATWRFSESDATVWERIPPSTDPMLLMRQ*
Ga0070716_1008391701	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0070712_1015120272	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DSDGLLLTGRGGSWRFSESDATTWERIPASSDPMVLMRQ*
Ga0075362_107335652	3300006177	Populus Endosphere	LGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERVPASTDPLVLMRQ*
Ga0074062_128245422	3300006606	Soil	DIGLSTWRLDSDGLLLSGRSGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0079220_117333051	3300006806	Agricultural Soil	GLLLTGRGGSWRFSESDATIWERIPASADPLVLMRQ*
Ga0075428_1017936341	3300006844	Populus Rhizosphere	IAAFNPSTWRLDRDLLILTGRNGSWRFSESDATVWERVPLSTDPLLLVRQ*
Ga0075421_1025320801	3300006845	Populus Rhizosphere	LLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0075430_1002852961	3300006846	Populus Rhizosphere	ASVADIELSTWRLDRDGLLLTGRGGSWRFSESDATTWERVPATADPLVLVRQ*
Ga0075425_1010502021	3300006854	Populus Rhizosphere	VELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0075429_1001366241	3300006880	Populus Rhizosphere	ELVLTGRAGAWRFSESDATTWERIPPSTDPLVLMRQ*
Ga0075429_1018602141	3300006880	Populus Rhizosphere	TWRLEDNELRLTGRTEAWRFSESDANTWERVPPSAEPMVLMRQ*
Ga0075426_105110331	3300006903	Populus Rhizosphere	TWQLDSEGLLLRGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0075424_1023719501	3300006904	Populus Rhizosphere	LSTWRLDSNELVLSGRNGAWRFSESDTTTWERIPPSTDPIVLMRQ*
Ga0075419_101264634	3300006969	Populus Rhizosphere	VTWRLEGGELVLTGRAGAWRFSESDATTWERIPPSTDPLVLMRQ*
Ga0075435_1004905222	3300007076	Populus Rhizosphere	GLSTWRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0099830_111854832	3300009088	Vadose Zone Soil	EGGELVLTGRAGAWRFSESDASTWERIPPSTDPLLLMRP*
Ga0111539_100849892	3300009094	Populus Rhizosphere	VKQGCDPSVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0105245_104114223	3300009098	Miscanthus Rhizosphere	STWRLADNELLLTGRGGTWRFSESDASIWERVPPSTDPMLLMRQ*
Ga0075418_125798121	3300009100	Populus Rhizosphere	PDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
Ga0126380_119668642	3300010043	Tropical Forest Soil	CDASVADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0126384_122888751	3300010046	Tropical Forest Soil	SEGLLLTGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0126382_106279742	3300010047	Tropical Forest Soil	SVADIGLSTWRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0126382_114641492	3300010047	Tropical Forest Soil	GVGLLTWRLERDELLLVGRSGSWRFSESDATSWERIPPSADPLVLMRQ*
Ga0126376_110938721	3300010359	Tropical Forest Soil	TWRLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPMVLMRQ*
Ga0126372_104601483	3300010360	Tropical Forest Soil	GCDSSVAGIELSTWRLDPDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0126378_131507411	3300010361	Tropical Forest Soil	FDSSVAGIELSTWRLDPDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ*
Ga0126379_113165912	3300010366	Tropical Forest Soil	LLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0126383_106817012	3300010398	Tropical Forest Soil	CDPSVADVELSTWQLDSEGLLLTGRAGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0126383_124698702	3300010398	Tropical Forest Soil	RLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0138514_1000375731	3300011003	Soil	IEDNELVVAGRSSAWRFSESDATTWERIPPSTDPLLMMRQ*
Ga0137391_112046381	3300011270	Vadose Zone Soil	LLFSGRTGTWRFAESDATTWERIPPSTDPLLMMRQ*
Ga0137388_107883321	3300012189	Vadose Zone Soil	TWRLQDNELLFSGRTGTWRFAESDATTWGRIPPSTDPLLMMRQ*
Ga0137362_103648451	3300012205	Vadose Zone Soil	ASVADIGLSTWRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0137370_100415364	3300012285	Vadose Zone Soil	TWRLDSDGLLLTGRGGSWRFSESDATTWERVPASSDPLVLMRQE*
Ga0137384_100874884	3300012357	Vadose Zone Soil	WRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0137384_107041252	3300012357	Vadose Zone Soil	DSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0137384_113964671	3300012357	Vadose Zone Soil	LVLAGRSGAWRFAESDSTTWERIPPSTDPLRLMRQ*
Ga0137390_111777952	3300012363	Vadose Zone Soil	RLDNNELLFSGRTGTWRFAESDATTWERIPPSTDPLLMMRQ*
Ga0157295_102168362	3300012906	Soil	AGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE*
Ga0157301_102625491	3300012911	Soil	AGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLRRE*
Ga0157302_105502061	3300012915	Soil	LLLTGRGGTWRFSESDVSTWERVPPSTDPMLLMRQ*
Ga0126375_120947722	3300012948	Tropical Forest Soil	IATWGPSTWRLDRDQIILTGRSGSWRFSESDATVWERVPLSVDPLLLVRQ*
Ga0126369_130893491	3300012971	Tropical Forest Soil	LGFTTWRLDADGLQLSGNGGRWRFSESDATSWERIPASTDPMVLMRQ*
Ga0134076_104057681	3300012976	Grasslands Soil	WRLDSDGLLLTGRGGSWRFSESDATTWERVPASSDPLVLMRQE*
Ga0134087_103961322	3300012977	Grasslands Soil	DTSVADIELSTWRLDSDGLLLTGRGGSWRFSESDATTWERVPASSDPLVLMRQE*
Ga0164308_122158912	3300012985	Soil	SVADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0164305_105772491	3300012989	Soil	VADIGLSTWRLDSDGLLLSGRSVSWRFSESDATTWERIPATSDPLVLMRQ*
Ga0075307_11053891	3300014260	Natural And Restored Wetlands	RIVVKPGCTAEIVGLALATWRLEVNDLLLIGRGGTWRFSESDATVWERIPPSTDPMVLMRQ*
Ga0157380_113310251	3300014326	Switchgrass Rhizosphere	STWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ*
Ga0132258_138425472	3300015371	Arabidopsis Rhizosphere	CDTSIAGLGLATWRLDSNELLLVGRGATWRFSESDATTWERIPPSADPMVLMRQ*
Ga0132256_1034917372	3300015372	Arabidopsis Rhizosphere	VLVGRGGTWRFSESDTTTWERIPPSADPMVLMRQ*
Ga0132257_1001947441	3300015373	Arabidopsis Rhizosphere	SEGLLLRGRGGSWRFSESDATTWERIPASADPLVLMRQ*
Ga0182035_115163882	3300016341	Soil	CDASVADIGLSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0182040_104331881	3300016387	Soil	DASVADIGLSTWRLDGDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0182037_105104151	3300016404	Soil	GLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0182038_112563123	3300016445	Soil	LLLSGRSGTWRFAASDSATWERIPPSTDPLLMMRQ
Ga0187777_104942801	3300017974	Tropical Peatland	WRLQNEELLLSGSTETWRFVESDASTWERVPPSTDPLVLMRQ
Ga0184610_10714731	3300017997	Groundwater Sediment	WRLDPDGLLLSGSGGTWRFSESDPSTWERIPASTDPVVLMRQ
Ga0184634_104752922	3300018031	Groundwater Sediment	VAGLGLSTWRLDPDGLMLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0184616_102298362	3300018055	Groundwater Sediment	CDASVAGLGLSTWRLDPDGLMLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0190272_119847012	3300018429	Soil	RLDRDGLVLSGRGVTWRFSESDATTWERIPPSADPMVLMRQ
Ga0066667_108747352	3300018433	Grasslands Soil	LLLTGRGGSWRFSESDATTWERVPATSDPLVLMRQ
Ga0190269_111473261	3300018465	Soil	TWRLDPDGLLLSGSGGTWRFSERDPTTWERIPASTDPLVLMRQ
Ga0190270_130847212	3300018469	Soil	AGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0190271_119943652	3300018481	Soil	LEVNDLLLVGRGGTWRFSEADATVWERIPPSTDPMLLMRQ
Ga0126371_108617672	3300021560	Tropical Forest Soil	ADIGLSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0222622_107375491	3300022756	Groundwater Sediment	PDGLLLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0207699_100582264	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VKQGCDSSVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0207687_107457051	3300025927	Miscanthus Rhizosphere	GLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE
Ga0207700_101489011	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AGGESYKITVKQGCDPSVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0207664_113341371	3300025929	Agricultural Soil	LLLSGSGGSWRFSESDATSWERIPASTDPLVLMRQ
Ga0207690_113306221	3300025932	Corn Rhizosphere	TWRLDRDQLILTGRNGSWRFSESDATVWERVPLTVDPMLLVRQ
Ga0207709_114519892	3300025935	Miscanthus Rhizosphere	LSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRE
Ga0207665_103565961	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0207712_112636091	3300025961	Switchgrass Rhizosphere	SVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0207640_105003274	3300025981	Corn Rhizosphere	DASVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0209240_10533832	3300026304	Grasslands Soil	LLLSGRSGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0257159_10282891	3300026494	Soil	DPSVADVELSTWRLDRDGLLLTGRGGSWRFSESDATTWERIPASADPLVLMRQ
Ga0209376_13501332	3300026540	Soil	WRLDSDGLLLTGRGGSWRFSESDATTWERVPASSDPLVLMRQE
Ga0207776_10339481	3300027035	Tropical Forest Soil	LLLSGSTETWRFVESDASTWERVPPSTDPLVLMRQ
Ga0209213_10600452	3300027383	Forest Soil	AIAGLGLATWRLDSNELVLVGRGGTWRFSESDPKTWERIPPSADPMVLMRQ
Ga0209481_100270211	3300027880	Populus Rhizosphere	VTWRLEGGELVLTGRAGAWRFSESDATTWERIPPSTDPLVLMRQ
Ga0209068_107331811	3300027894	Watersheds	WRLEANELMLIGRAGTWRFSESDASTWERIPPSTDPMLLMK
Ga0137415_109224382	3300028536	Vadose Zone Soil	DGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0307309_100118281	3300028714	Soil	CDASVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0307313_100627272	3300028715	Soil	GLSTWRLDPDGLMLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0307280_100409411	3300028768	Soil	RLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0307323_101887201	3300028787	Soil	GLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPVVLMRQ
Ga0307323_102073011	3300028787	Soil	RLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0307284_102227371	3300028799	Soil	ESYKITVKQGCDPSVADVELSTWRLDSDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0247824_109324492	3300028809	Soil	STWRLDRDQLILIGRGGSWRFSESDATVWERFPLSVDPMLLVRQ
Ga0307312_102888021	3300028828	Soil	PGCDASLAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0318555_103146392	3300031640	Soil	LLLFGRNETWRFVESDATTWERVPPSTDPLLLMRQ
Ga0318561_108188881	3300031679	Soil	RLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318572_106949432	3300031681	Soil	ASVADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318500_105009201	3300031724	Soil	GLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318546_101292433	3300031771	Soil	TWRLDNDELLLAGRMTWRFTESDTTTWERISPSTDPMLLMRQ
Ga0318543_102430051	3300031777	Soil	STWRLDSDGLLLSGPGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318566_106054182	3300031779	Soil	PGCDASVADAELSTWRLDQDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0318548_102770282	3300031793	Soil	WRLDSDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318576_100643323	3300031796	Soil	CDASVADAELSTWRLDQDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0318550_105352041	3300031797	Soil	ALATWRLDSDELLLSGSTTWRFAESDTTTWERIPPSTDPMLLMRQ
Ga0306925_104808412	3300031890	Soil	SDGLLLTGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0306925_107574891	3300031890	Soil	STWRLQENELLLSGGAGTWRFAESDATTWERIPPSTDPLLMMRQ
Ga0318520_104296302	3300031897	Soil	LSTWRLDRDELLLAGRSGAWRFGESDSTTWERLPPSTDPLVLMRQ
Ga0306923_108487761	3300031910	Soil	CDASVADIGLSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0310884_104644631	3300031944	Soil	ASVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0306926_127192641	3300031954	Soil	LQENELLLSGRAGTWRFAESDATTWERIPPSTDPLLMMKQ
Ga0318530_100382333	3300031959	Soil	DGLLLTGRSGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0318558_101296553	3300032044	Soil	ASVADAELSTWRLDQDGLLLTGRGGSWRFSESDATTWERIPASSDPLVLMRQ
Ga0318575_104266592	3300032055	Soil	QENELLLSGGAGTWRFAESDATTWERIPPSTDPLLMMRQ
Ga0318575_104890101	3300032055	Soil	LSTWRLDSDGLLLSGRGGSWRFSESDATTWERIPATSDPLVLMRQ
Ga0310889_107365031	3300032179	Soil	SVAGLGLSTWRLDPDGLLLSGSGGTWRFSESDPTTWERIPASTDPLVLMRQ
Ga0306920_1008236471	3300032261	Soil	SDGLLLSGPGGSWRFSESDATTWERIPATSDPLVLMRQ