NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F055973

Metagenome / Metatranscriptome Family F055973

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F055973
Family Type Metagenome / Metatranscriptome
Number of Sequences 138
Average Sequence Length 72 residues
Representative Sequence MATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSYLHTAGAYDAFTAAIMTRLGFKALYGS
Number of Associated Samples 121
Number of Associated Scaffolds 138

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.55 %
% of genes near scaffold ends (potentially truncated) 98.55 %
% of genes from short scaffolds (< 2000 bps) 88.41 %
Associated GOLD sequencing projects 114
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (88.406 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(18.116 % of family members)
Environment Ontology (ENVO) Unclassified
(34.783 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.580 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.
1ICCgaii200_10148321
2ICChiseqgaiiFebDRAFT_136048841
3JGI11643J11755_110077342
4JGI11643J12802_122463502
5JGI11643J12802_122694021
6JGI11615J12901_131177832
7soilL2_101089451
8soilH1_100023693
9soilH1_100023701
10Ga0063356_1038357571
11Ga0062595_1024024481
12Ga0062591_1001180102
13Ga0062591_1018075712
14Ga0062594_1011851802
15Ga0068998_101547901
16Ga0065715_100080301
17Ga0070690_1000647393
18Ga0068869_1015567762
19Ga0070682_1002097062
20Ga0070687_1004511371
21Ga0070669_1016695441
22Ga0070674_1011134281
23Ga0070705_1006077952
24Ga0070708_1004023202
25Ga0070663_1001112501
26Ga0070663_1006327992
27Ga0070707_1000729475
28Ga0070697_1020666661
29Ga0070704_1013049952
30Ga0068855_1000796841
31Ga0070664_1006075211
32Ga0070702_1004808272
33Ga0068852_1020260991
34Ga0066905_1019657661
35Ga0068863_1004172961
36Ga0068863_1018802262
37Ga0068860_1005793711
38Ga0066652_1014719162
39Ga0075026_1007108961
40Ga0070716_1012411731
41Ga0070712_1002203601
42Ga0074054_118964491
43Ga0079221_113625771
44Ga0075431_1019782821
45Ga0075420_1015501192
46Ga0075426_105052401
47Ga0079219_109567211
48Ga0066710_1014007572
49Ga0114129_112253292
50Ga0114129_114798241
51Ga0111538_100840086
52Ga0105092_103183382
53Ga0075423_112448202
54Ga0075423_118501871
55Ga0105248_127182851
56Ga0126315_101924762
57Ga0126309_109687951
58Ga0126311_107519021
59Ga0126311_115402532
60Ga0126306_114498921
61Ga0134125_109522622
62Ga0134126_100511421
63Ga0134126_110954131
64Ga0134126_126608932
65Ga0134124_107326091
66Ga0134124_114106062
67Ga0134121_110476522
68Ga0105246_126043581
69Ga0136613_104854022
70Ga0136614_102545551
71Ga0157285_103323591
72Ga0157288_101133431
73Ga0157289_103057811
74Ga0164241_112029512
75Ga0164298_110718722
76Ga0164303_115073801
77Ga0164306_110887691
78Ga0075301_10742321
79Ga0075355_12418132
80Ga0157377_108824201
81Ga0136617_111611732
82Ga0163161_112645612
83Ga0190266_110835201
84Ga0184605_100289514
85Ga0184623_100825452
86Ga0190265_100736373
87Ga0190265_101642623
88Ga0173481_102405012
89Ga0190264_108691502
90Ga0193731_10755602
91Ga0193717_11074901
92Ga0210409_106984841
93Ga0196962_102220262
94Ga0209751_101255323
95Ga0207688_106481801
96Ga0207646_100682471
97Ga0207681_114109451
98Ga0207689_116105601
99Ga0207679_111955412
100Ga0207679_119530932
101Ga0210102_10762062
102Ga0208915_10251751
103Ga0207676_105844151
104Ga0209798_103618211
105Ga0209974_103243462
106Ga0307293_100677492
107Ga0307313_100574131
108Ga0307301_102055021
109Ga0307317_103019152
110Ga0307282_101833601
111Ga0307302_107046102
112Ga0307310_100405393
113Ga0307312_104927961
114Ga0307308_106216941
115Ga0307304_100439811
116Ga0302273_10683181
117Ga0299906_102459771
118Ga0299913_103502912
119Ga0255312_10611512
120Ga0307408_1004676372
121Ga0307408_1018362301
122Ga0307405_100801601
123Ga0307410_100129041
124Ga0307410_101815623
125Ga0307410_109260962
126Ga0310904_100845451
127Ga0307406_105794132
128Ga0307407_100548173
129Ga0307407_103675261
130Ga0307416_1022773182
131Ga0307414_105960272
132Ga0307415_1016658062
133Ga0307471_1026484872
134Ga0326726_120157541
135Ga0316626_108583132
136Ga0364924_074022_545_748
137Ga0370504_0031632_3_218
138Ga0373916_0076070_318_521
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.16%    β-sheet: 0.00%    Coil/Unstructured: 57.84%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

10203040506070MATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSYLHTAGAYDAFTAAIMTRLGFKALYGSSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
89.1%10.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Wetland Sediment
Polar Desert Sand
Natural And Restored Wetlands
Groundwater Sediment
Watersheds
Soil
Soil
Terrestrial Soil
Serpentine Soil
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Soil
Soil
Untreated Peat Soil
Natural And Restored Wetlands
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Soil
Sandy Soil
Soil
Bog
Peat Soil
Sediment
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Sediment Slurry
18.1%5.1%3.6%2.9%5.1%6.5%2.9%5.8%8.7%3.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ICCgaii200_101483212228664021SoilMATTAPVSPSATFPGDAISKLFAPPEREHPADKLRRLLKEAKAKGSCLHTAGAYDAFSAAIMTR
ICChiseqgaiiFebDRAFT_1360488413300000363SoilMATAAPVSANATYPAEVVAKLFAPPEAEIPAVKLRRLLKEAQAKGSYLHTAGAYDAFTAAIMTKLGFTSLYGSGWQLAATK
JGI11643J11755_1100773423300000787SoilMATATPPTSAQAVYPAEAVGKLIAPPETEIPADKLRRLLHEARDAKSYIHTAGSYDAFTAAIMTRLGFKALYGSGW
JGI11643J12802_1224635023300000890SoilLNPGNRMATVNPPKKVTYPQAEIARLFAPPEDEQPSHKLRRLLHEARASRSYVHTAGAYDAFTAAIMTRLGFKALYGSGWQL
JGI11643J12802_1226940213300000890SoilMATATRPVSPNAAYPAEAVGRLFAPPETEVPALKLRRLLHEARDKRSFLHTAGAYDAFTSAIMTKLGFKALYGSGWQL
JGI11615J12901_1311778323300000953SoilMATATPPASSHASYPAEAVGRLFAPPESEDAAAKLRRLLHEARDKGTHVHTAGAYDAFTSAIMTRLGFKALYGSGWQ
soilL2_1010894513300003319Sugarcane Root And Bulk SoilMATATSPVSTKVTYPAEAVNKLFAPPDLEVPADKLRRLLHEARDKKTYLHSAGAYDAFTAAIMTRVGFTSLYGSGWQ
soilH1_1000236933300003321Sugarcane Root And Bulk SoilMATATNPASTKVSYPAEAVNRLFAPPEREVPADKLRRLLHEARDKKSYLHTAGAYDAFTAAIMTTLGFKTLYGSGWQLAATK
soilH1_1000237013300003321Sugarcane Root And Bulk SoilMATATPPVSRKVTYPAEAVNRLFAPPEREVPADKLRRLLHEARDKGTYLHTAGAYDAFTAAIMTTLGFKTLYGSGWQLAATKSMY
Ga0063356_10383575713300004463Arabidopsis Thaliana RhizosphereMATSAAPVSPNATFPADAISKLFAPPEREHPADKLRRLLQEAKAKGSYLHTAGAYDAFSAAIMTRVGFKSLYGSGWQL
Ga0062595_10240244813300004479SoilMATATPPASPKVSYPAEAVNRLFAPPESEVPADKLRRLLVEARDAGSYLHTAGAYDAFTAAIMTSLGFKTLYGSGWQLAATKSM
Ga0062591_10011801023300004643SoilVTATANPTSPVAGKVPYPADEISKLLAPNEKENPAVKLRRLLHEARDKGSFLHSAGAYDAYTAALMTKLGFKALYGSGWQLAATW
Ga0062591_10180757123300004643SoilMATAAPVSANATYPAEVVAKLFAPPEAEIPAVKLRRLLKEAQAKGSYLHTAGAYDAFTAAIMTKLGFTSLYGS
Ga0062594_10118518023300005093SoilMATATSPVSQKVSYPAEAVNRLFAPPESEVPADKLRRLLHEARDKGSFLHTAGAYDAFTAAIMTALGFKT
Ga0068998_1015479013300005213Natural And Restored WetlandsMATVSPPNRPSSPDAVYPVQEVAKLLAPPEKEQPADKLRRLLHEARDQGSFLHTAGAYDAYTAAIMTRLGFTSLYGSGW
Ga0065715_1000803013300005293Miscanthus RhizosphereMATTAPVSPNATFPADAISKLFAPPEREHPADKLRRLLKEAKAKGSCLHTAGAYDAFSAAIMT
Ga0070690_10006473933300005330Switchgrass RhizosphereMATATPPANKNAVYPKAEVARLLAPPEQEQPSAKLRRLLHEARARKSYVHTAGAYDAYTAALMTRLGFKALYGSGWQLAATKNMFP
Ga0068869_10155677623300005334Miscanthus RhizosphereMATATSPVSTKVTYPAEAVGKLFAPPDMEVPADKLRRLLHEARDKKTYLHSAGAYDAFTAAIMTRVGFTSLYGS
Ga0070682_10020970623300005337Corn RhizosphereMATATSPVSTKVTYPAEAVSKLFAPPDMEVPADKLRRLLHEARDKKFYLHSAGAYDAFTAAIMTRVGFTSLYGSGW
Ga0070687_10045113713300005343Switchgrass RhizosphereMATTAPVSPNATFPADAISKLFAPPEREHPADKLRRLLKEAKAKGSCLHTAGAYDAFSAAIMTRVG
Ga0070669_10166954413300005353Switchgrass RhizosphereMATATSPVSTKVTYPAEAVSRLFAPPDMEVPADKLRRLLHEARDKKSYLHSAGAYDAFTAAIMTRV
Ga0070674_10111342813300005356Miscanthus RhizosphereMATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSYLHTAGAYDAFTAAIMTRLGFKALY
Ga0070705_10060779523300005440Corn, Switchgrass And Miscanthus RhizosphereMATATRAESVHAVYPAEAVAKLFAPPETEEPADKLRRLLLEAHARKSFIHTAGAYDAFSSAIMTR
Ga0070708_10040232023300005445Corn, Switchgrass And Miscanthus RhizosphereMATVTPPTSPHATYPADLVNKLFAPPESEVPGDKLRRLLREAQAKGSFLHTAGAYDAFSSAIMTR
Ga0070663_10011125013300005455Corn RhizosphereMATATPPANKNAVYPKAEVARLLAPPEQEQPSAKLRRLLHEARARKSYVHTAGAYDAYTAALMTRLGFKALYGSGWQ
Ga0070663_10063279923300005455Corn RhizosphereMATATSPVSTKVTYPAEAVGKLFAPPDMEVPADKLRRLLHEARDKKTYLHSAGAYDAFTAAIMTR
Ga0070707_10007294753300005468Corn, Switchgrass And Miscanthus RhizosphereMATATPPVSSKASYPSEAVGRLFAPPESELPADKLRRLLHEARNAGSFLHTAGAYDAFTSAIMT
Ga0070697_10206666613300005536Corn, Switchgrass And Miscanthus RhizosphereMATTAAPVSPNATYPAEALAKLFAPPEREEPAAKLRRLLHEAKAKGSYLHTAGAYDAFSAAIMTRVGFKSLYGSGWQLAATKSMY
Ga0070704_10130499523300005549Corn, Switchgrass And Miscanthus RhizosphereMATATPPVSAKPVYPAEAVAKLIAPPETEEPADKLRRLLHEARTKKSYLHTAGAYDAFTAAIMTR
Ga0068855_10007968413300005563Corn RhizosphereMATATPPANKNAVYPKAEVARLLAPPEQEQPSAKLRRLLHEARARKSYVHTAGAYDAYTAALMTRLGFKALYGSGWQLAA
Ga0070664_10060752113300005564Corn RhizosphereMASATSPVSTKVTYPAEAVNKLFAPADLEVPADKLRRLLHEARAKKTYLHSAGAYDAFTAAIMTRVGFTSL
Ga0070702_10048082723300005615Corn, Switchgrass And Miscanthus RhizosphereMATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSYLHTAGAYDAFTAAIMTRLGFKALYGS
Ga0068852_10202609913300005616Corn RhizosphereMATATSPVSTKVSYPAEAVSKLFAPPDMEVPADKLRRLLHEARDKKTYLHSAGAYDAFTAAIMTRVGFTSLYGSGWQLAATK
Ga0066905_10196576613300005713Tropical Forest SoilMATAAPVSPNATFPADAISKLFAPPEREHPAERLRRLLHEAKAKGSYLHTAGAYDAFSA
Ga0068863_10041729613300005841Switchgrass RhizosphereMATATNPVSSKVSYPAEAVNRLFAPPEREVPADKLRRLLHEARDQKGFLHTAGAYDAFTAAIMTTLGFKTLYGSGWQ
Ga0068863_10188022623300005841Switchgrass RhizosphereMASATSPVSTKVTYPAEAVGKLFAPPDMEVPADKLRRLLHEARDQKGFLHTAGAYDAFTAAIMTTLGFKTLYGSGWQ
Ga0068860_10057937113300005843Switchgrass RhizosphereMATATRPDTAHATYPAEALGKLFAPPETEEPADKLRRLLHEARDRKTYLHTAGAYDAFTAAIMTRL
Ga0066652_10147191623300006046SoilMATATPPVSSKATYPSEAVGRLFAPPESELPADKLRRLLHEARNAGSFVHTAGAYDAFTSAIMTTVGFK
Ga0075026_10071089613300006057WatershedsMAITAAPVSPNATYPAEALAKLFAPPEREEPAAKLRRLLHEARAKGSYLHTAGAYDAFSAAIMTRVGFKSLYGS
Ga0070716_10124117313300006173Corn, Switchgrass And Miscanthus RhizosphereMASTAAPVSPHASYPAEAIAKLFAPPEREHPALKLRRLLHEARAKGTYLHTAGAYDAFSAAIMTRVGFKALYGSGWQLAATKSM
Ga0070712_10022036013300006175Corn, Switchgrass And Miscanthus RhizosphereMATATTPLSSKVSYPTEAVNRLFAPPEREIPADKLRRLLHEARDKKSFLHTAGAYDAFTAAIMTTLGFKTLYGSGWQLAATKSMY
Ga0074054_1189644913300006579SoilMATAATTPVSSKVSYPAEAVNRLFAPPEPEIPADKLRRLLHEARDQKSFLHTAGAYDAFTAA
Ga0079221_1136257713300006804Agricultural SoilMATATRPVSAQAVYPAEALQKLFAPPEAEQPADKLRRLLHEARDRKSFLHTAGAYDAFTAALMTRL
Ga0075431_10197828213300006847Populus RhizosphereMATATRPVSPHAAYPAEAVGRLFAPPEDEVPALKLRRLLHEARDKGSFLHTAGAYDAFTSAIMTKLGFKALYGSGWQLAATKS
Ga0075420_10155011923300006853Populus RhizosphereMATATRPVSPNAAYPADAVGRLFAPPESEVPALKLRRLLHEARDKGTYLHTAGAYDAFTSAIMTKLGFKALYGSGWQLAATKSM
Ga0075426_1050524013300006903Populus RhizosphereMATTAPVSPNATFPADAISKLFAPPEREHPADKLRRLLKEAKAKGSCLHTAGAYD
Ga0079219_1095672113300006954Agricultural SoilMASTAAPVSPHTSYPAEAIAKLFAPPEREHPAVKLRRLLHEANAKGTYLHTAGAYDAFSAAIMTRVGFKALYGSGWQLAATKSMY
Ga0066710_10140075723300009012Grasslands SoilMATATPPVSSKASYPSEAVGRLFAPPESELPADKLRRLLHEARNARSFLHTAGAYDAFTSAIMTTLGFKTLY
Ga0114129_1122532923300009147Populus RhizosphereMATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSYLHTAGAYDAFTAAIMTRLGFKALYGSGWQL
Ga0114129_1147982413300009147Populus RhizosphereMASTAAPVSPNASYPAEAIAKLFAPPEREHPALKLRRLLHEARAKGTYLHTAGAYDAFSAAIMTR
Ga0111538_1008400863300009156Populus RhizosphereMATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSYLHTAGAYDAFTAAIMTRLGFKALYGSG
Ga0105092_1031833823300009157Freshwater SedimentMATATPPVSPNAAYPGEAVGRLFAPPETEVPALKLRRLLHQARDKGTFLHTAGAYDAFTS
Ga0075423_1124482023300009162Populus RhizosphereMATATTPLSSKVSYPAEAVNRLFAPPEPEVPADKLRRLLHEARDQKGFLHTAGAYDAFTAAIMTTLGFKTLYGSGWQL
Ga0075423_1185018713300009162Populus RhizosphereMATATPPASSKVSYPSEAVGRLFAPPESELPADKLRRLLHEARAAGSFLHTAGAYDAFTS
Ga0105248_1271828513300009177Switchgrass RhizosphereMATATSPVSTKVTYPAEAVSRLFAPPDMEVPADKLRRLLHEARDKKSYLHSAGAYDAFTAAIMTRVGFTSLYG
Ga0126315_1019247623300010038Serpentine SoilMATATTPVSAKVTYPAEAVNLLFAPPESEVPADKLRRLLLEARDAKSFVHTAGAYDAFTSAIMTTLGFKTLYGSGWQLA
Ga0126309_1096879513300010039Serpentine SoilMATVTRPVSTHAAFPAEAIGKLFAPPEREEPAEKLRRLLHEARARKSFLHTAGAYDAFTSAIM
Ga0126311_1075190213300010045Serpentine SoilMATATRPVSAHAVYPAEALQNLFAPPETEQPAEKLRRLLHEARARKSYLHTAGAYDAFTAAIMTRLGFRALYGS
Ga0126311_1154025323300010045Serpentine SoilMATATRPTSAHAVYPAESLQKLFAPPEAERPADKLRRLLHEARQQKSYVHTAGAYDAFTSAIMTRLGFKALYGSGWQL
Ga0126306_1144989213300010166Serpentine SoilMATATPPVSAKVTYPAEAVNLLFAPPESEVPADKLRRLLLEARDAKSFVHTAGAYDAFTSAIMTTLGFKTLYGSGWQLAATK
Ga0134125_1095226223300010371Terrestrial SoilMATATRPASPKISYPAEAVNRLFAPPESELPADKLRRLLHEARDARSFLHTAGAYDAFT
Ga0134126_1005114213300010396Terrestrial SoilMATATRPASPKISYPAEAVNRLFAPPESELPADKLRRLLHEARDARSFLHTAGAYDAFTAAIMTSLGFKALYGS
Ga0134126_1109541313300010396Terrestrial SoilMATATNPASSKVSYPAEAVNRLFAPPEREVPADKLRRLLQEARDKKSFLHTAGAYDAFSAAIM
Ga0134126_1266089323300010396Terrestrial SoilMATATRPVSAHSTYPAEALGKLFAPPETEEPADKLRRLLHEARARKTYLHTAGAYDAFTAAIMTRLGFK
Ga0134124_1073260913300010397Terrestrial SoilMATATNPVSSKVSYPAEAVNRLFAPPEREVPADKLRRLLHEARDKKSFLHTAGAYDAFTAAIMTTLGFKTL
Ga0134124_1141060623300010397Terrestrial SoilMATATNPVSSKVSYPAEAVNRLFAPPEREVPADKLRRLLHEARDQKGFLHTAGAYDAFTAAIMTTLGFKTLYGSGWQLAAT
Ga0134121_1104765223300010401Terrestrial SoilMATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEAHARNSYLHTAGAYDAFTAAIMTRLGFKALYG
Ga0105246_1260435813300011119Miscanthus RhizosphereMATATTPVTSQTSYPAVEVGRLFAPPESEVPADKLRRILHEARAAKSFVHTAGAYDAFTSAIMTSLGF
Ga0136613_1048540223300012681Polar Desert SandVSLHATYPEEAVGKLFAPPENEVPADKLRRLLREAQAKGSFLHTAGAYDAFTAAIMTRVGFKALYGSGWQLAATKS
Ga0136614_1025455513300012684Polar Desert SandMATATRPESVHATYPAEGVGKLFAPPETEEPADKLRRLLHEARARKSFLHTAGAYDAFTSAIMTRLGFKALYG
Ga0157285_1033235913300012897SoilMATATSPVSTKVSYPAEAVSKLFAPPDMEVPADKLRRLLHEARDKKTYLHSAGAYDAFTA
Ga0157288_1011334313300012901SoilMATATSPVSTKVTYPAEAVGKLFAPPDMEVPADKLRRLLHEARDKKTYLHSAGAYDAFTAAIMTRVGFTSLYG
Ga0157289_1030578113300012903SoilMATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSFLHTAGAYDAFTAAIMTRLGFKALYGSGWQL
Ga0164241_1120295123300012943SoilMATATSPVSRKVSYPAEAVNRLFAPPESEVPADKLRRLLHEARDKGSFLHTAGAYDAFTAAI
Ga0164298_1107187223300012955SoilMATATPPVSAQAVYPADAVAKLIAPPETEEPATKLRRLLQEARAGNSFLHTAGAYDA
Ga0164303_1150738013300012957SoilMATTAAPVSPHASYPAEAIAKLFAPPELEHPALKLRRLLQEAKAKGTYLHTAGAYDAFSAAIM
Ga0164306_1108876913300012988SoilMATATNPASSKVSYPAEAVNRLFAPPEREVPADKLRRLLHEARDKKSFLHTAGAYDAFTAAIMTTLGFKTLYG
Ga0075301_107423213300014262Natural And Restored WetlandsMATVSKPASANATYPASEVAKLLAPPEKENPADKLRRLLHEARDRRSYIHTAGAYDAYTSAIMTRLGFKALYGIGWQLAATKN
Ga0075355_124181323300014322Natural And Restored WetlandsVTATANPKSPVAGKVSFPADEIGKLLAPPETENPAAKLRRLLHEARDAGSFLHSAGAYDAYTAALMTKLGFKALYGSGWQLAAT
Ga0157377_1088242013300014745Miscanthus RhizosphereMATATRPVSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEAHARNSYLHTAGAYDAFTAAIMTRLGFK
Ga0136617_1116117323300017789Polar Desert SandMATATRPVSAHSAYPADGVSKLFAPPESEEPADKLRRLLHDARARKSFLHTAGAYDAFTSAIMTRLGFKALYGSGW
Ga0163161_1126456123300017792Switchgrass RhizosphereMATATRPDSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSYLHTAGSYDAFTAAIMTRLGFKALYGS
Ga0190266_1108352013300017965SoilMATATRPVSPHAAYPAEAVGRLFAPPEDEVPALKLRRLLHEARDKGSFLHTAGAYDAFTSAIMTKLGFKALYGSGWQ
Ga0184605_1002895143300018027Groundwater SedimentMATVTRPVSAHATYPAEALGKLFAPPETEVPADKLRRLLREAQAAGSYLHTAGAYDAFTAAIMTRLGFKAVYGS
Ga0184623_1008254523300018056Groundwater SedimentMATATPPLSAHVDYPADAVAKLFAPPETEEPADKLRRLLHEARARKSFLHTAGAYDAFTAAIMTRLGFKALYGSGWQLAA
Ga0190265_1007363733300018422SoilMATATPRVSAKVDYPADAVAKLFAPPETEEPADKLRRLLHEARARKSFLHTAGAYDAFTAAIMTRLGFKALYGSGWQL
Ga0190265_1016426233300018422SoilMATATRPASPHAAYPADAVGRLFAPPETEVPAVNRRRARHYERDKGADVDTAGAYDAFPSAIMTKLGFKAVYGSGWQV
Ga0173481_1024050123300019356SoilMATATPPVSAHAAYPAEALQKLFAPPEAEQPADKLRRLLHEARSRNSFLHTAGAYDAFT
Ga0190264_1086915023300019377SoilMATATTPVTSQSSYPAEAVGRLFAPPETEVPADKLRRILQEARAAKSFVHTAGAYDAFTSAIMTSLGFKTLYGSGWQLAAT
Ga0193731_107556023300020001SoilMATATPPVSPHADYPAAALAKLFAPPETEEPADKLRRLLHEARARKSFLHTAGAYDAFTAAI
Ga0193717_110749013300020060SoilMATATPPVSTHAAYPANAVAKLFAPPETEEPADKLRRLLHEARARKSFLHTAGAYDAFTAAIMTRLGFKAPA
Ga0210409_1069848413300021559SoilMATAAAPVSPNATYPAEAIAKLFAPPEREEPATKLRRLLHEARTKKSFLHTAGAYDAFSAAIMTRV
Ga0196962_1022202623300024430SoilMATATRPVSAHAVYPAEALQKLFAPPETEQPADKLRRLLHEARARKSYLHTAGAYDAFTAAIMTRLGFK
Ga0209751_1012553233300025327SoilMATATPPVSAHAAYPADAVAKLFAPPETEEPGDKLRRLLHEARARKSFLHTAGAYDAFTAAIMTRLGFKALYGSGWQLAATKS
Ga0207688_1064818013300025901Corn, Switchgrass And Miscanthus RhizosphereMATATSPVSTKVTYPAEAVGKLFAPPDMEVPADKLRRLLHEARDKKTYLHSAGAYDAFTAAIMTRVGFT
Ga0207646_1006824713300025922Corn, Switchgrass And Miscanthus RhizosphereMATATPPVSSKASYPSEAVGRLFAPPESELPADKLRRLLHEARNAGSFLHTAGAYDAFTSAIMTTLGFKTLYGSGWQLA
Ga0207681_1141094513300025923Switchgrass RhizosphereMATATPPATKNAVYPKAEVARLLAPPEQEQPSAKLRRLLHEARARKSYVHTAGAYDAYTAALMTRLGFKALYGSGW
Ga0207689_1161056013300025942Miscanthus RhizosphereMATATRPVSAHAVYPAEALQKLFAPPEAEQPADKLRRLLREARDNKSYLHTAGAYDAFTAAIMTRLGF
Ga0207679_1119554123300025945Corn RhizosphereMATATSPVSTKVTYPAEAVSKLFAPPDMEVPADKLRRLLHEARDKKSYLHSAGAYDAFTAAIMTRVGFTSLYGSGWQLAATKSMYP
Ga0207679_1195309323300025945Corn RhizosphereMATTAPVSPNATFPADAISKLFAPPEREHPADKLRRLLKEAKAKGSCLHTAGAYDAFSA
Ga0210102_107620623300025971Natural And Restored WetlandsMATATPPVSSKVSYPTEAVNRLFAPPESEVPADKLRRLLQEARAKGSFLHTAGAYDAFTAAIMTTLGFKTLY
Ga0208915_102517513300026048Natural And Restored WetlandsMATATPPVNKNAVYPRDEIAKLLAPPEQEHPGTKLRRILHEARDKRSFVHTAGAYDAFTAAIMTRLGFKALYGSGWQLAAVKN
Ga0207676_1058441513300026095Switchgrass RhizosphereMATATNPVSSKVSYPAEAVNRLFAPPEREVPADKLRRLLHEARDQKGFLHTAGAYDAFTAAIMTTLGFKTLYGSGWQLAATKSMYPD
Ga0209798_1036182113300027843Wetland SedimentMATATPPVSSKISYPAEEVGRLFAPPESEVPADKLRRILLEARDAKSFVHTAGAYDAFTSAIMTTLGFKTLYGSG
Ga0209974_1032434623300027876Arabidopsis Thaliana RhizosphereMATATPPMSTKAVYPAEAVAKLFAPPETEEPADKLRRLLHEARARNSYLHTAGAYDAFTAAIMT
Ga0307293_1006774923300028711SoilMATATRAESAHAVYPAEAVAKLFAPPETEEPADKLRRLLREAHARKSFLHTAGAYDAFSS
Ga0307313_1005741313300028715SoilMATATPPVSAKAVYPAEAVAKLIAPPETEEPADKLRRLLREARTKKSYLHTAGAYDAFTAAIM
Ga0307301_1020550213300028719SoilMATATRAESAHAVYPAEAVAKLFAPPETEEPADKLRRLLHEAHARKSFLHTAGAYDAFSSAIMTRLGFKALYGSG
Ga0307317_1030191523300028720SoilMATVNPPVSPDAAFPAAAVGKLFAPPEIEEPAYKLRRLLREAQAAGSYLHTAGAYDAFTA
Ga0307282_1018336013300028784SoilMATATPPVSAKAVYPAEAVAKLIAPPETEEPADKLRRLLREARTKKSYLHTAGAYDAF
Ga0307302_1070461023300028814SoilMATATRPVSAHAVYPAAAVGKLFAPPETEEPADKLRRLLRDAHTRKSFLHTAGAYDAFSAAIMTRLGFKALYGSGWQLA
Ga0307310_1004053933300028824SoilMATVNPPVSPDAAFPAAAVGKLFAPPEIEEPADKLRRLLREAQAAGSYLHTAGAYDAFTAAIMTRLGFKALYGSGWQLAATKSMFP
Ga0307312_1049279613300028828SoilMATATRAESAHAVYPAEAVAKLFAPPETEEPADKLRRLLREAHARKSFLHTAGAYDAFSSAIMTRLGFKTLYGSGWQ
Ga0307308_1062169413300028884SoilMAAVTPPASPNAVFPAAGVAKLFAPPETEVPADKLRRLLRDAQAAGSYLHTAGAYDAFTAAIMTRLGFKALYGSGWQL
Ga0307304_1004398113300028885SoilMATATRAESAHAVYPAEAVAKLFAPPETEEPADKLRRLLHEAHARKSFLHTAGAYDAF
Ga0302273_106831813300030048BogVTATANPKSPVAGKVPFPAGEISKLLAPPETENPAVKLRRLLHEARDKGSYLHSAGAYDAYTAALMTKLGFKALYGSGWQLAA
Ga0299906_1024597713300030606SoilMATATRPESGNAVYPADAVSKLFAPPESEEPADKLRRLLREAHARKSFLHTAGAYD
Ga0299913_1035029123300031229SoilMATATRPVSPHAAYPADAVSRLFAPPETEVPALKLRRLLHEARDKGTFLHTAGAYDAFTAAIMTRLGF
(restricted) Ga0255312_106115123300031248Sandy SoilMATTAAPVSPNATYPAEALAKLFAPPEREEPAAKLRRLLHEARTKRSYLHTAGAYDAFTAAIM
Ga0307408_10046763723300031548RhizosphereMATAAPVSADATYPAEVVAKLFAPPEAEVPAVKLRRLLREAQAKGSFLHTVGAYDAFTAAIMTKLGFKALYGSGWQLAAT
Ga0307408_10183623013300031548RhizosphereMATATPPASPKVSYPAEAVNRLFAPPESEVPADKLRRLLQQAREAGSYLHTAGAYDAFTAAIMTSLGFKTLY
Ga0307405_1008016013300031731RhizosphereMATATSPVSTKVSYPAEAVSKLFAPPDMEVPADKLRRLLHEARDKKSYLHSAGAYDAFTAAIMTRV
Ga0307410_1001290413300031852RhizosphereMATATRPESVHSIYPADGITKLFAPPETEQPADKLRRLLHEARDRKSFLHTAGAYDAFTS
Ga0307410_1018156233300031852RhizosphereMATATRPVSPHAAYPADAVSRLFAPPESEIPAVKLRRLLHEARDKGTYLHTAGAYDAFTSAIMTKLGFKALYGSGW
Ga0307410_1092609623300031852RhizosphereMATATRPVSTHAAYPAEALQKLFAPPETEQPADKLRRLLHEARAGKSYLHTAGAYDAFTAAIMTRLGFKALYG
Ga0310904_1008454513300031854SoilMATATRPLSAHAAYPAEALQKLFAPPETEQPADKLRRLLHEARARNSYLHTAGAYDAFTAAIMTRLGFKA
Ga0307406_1057941323300031901RhizosphereMATATRPVSPHAAYPADAVSRLFAPPESEIPAVKLRRLLHEARDKGTYLHTAGAYDAFTSAIMTKLGFKALYGSGWQLA
Ga0307407_1005481733300031903RhizosphereMATATRPVSAHAAYPAEALQKLFAPPETEEPADKLRRLLQEARARKSFVHTAGAYDAFTAAIMTRLGFKAL
Ga0307407_1036752613300031903RhizosphereMATATRPESVHSIYPADGVAKLFAPPETEQPADKLRRLLHEARDRKSFLHTAGAYDAFTSAIMTRLGFKALYG
Ga0307416_10227731823300032002RhizosphereMATATTPVSAKVTYPAEAVNLLFAPPESEVPADKLRRLLLEARDAKSFVHTAGAYDAFTSAIMTTLGFKTLY
Ga0307414_1059602723300032004RhizosphereMATATRPESVHSIYPADGVAKLFAPPETEQPADKLRRLLHEARDRKSFLHTAGAYDAFTSAIMTRLGFKALYGSGWQLAATKSMFP
Ga0307415_10166580623300032126RhizosphereMATATRPESVHSIYPADGIAKLFAPPETEQPADKLRRLLHEARDRKSFLHTAGAYDAFTSAIMTRL
Ga0307471_10264848723300032180Hardwood Forest SoilMATATPPVSKNATYPQADVGKLIAPPELEQPSAKLRRLLHEARAKGSYLHTAGAYDAYTAALMTRLGFKALYGSGWQLAAT
Ga0326726_1201575413300033433Peat SoilMATVSKPASANATYPASEVAKLLAPPEKENPADKLRRLLHEAQDRRSYIHTAGAYDAYTSAIMTRLGFKALYGSGW
Ga0316626_1085831323300033485SoilVTATAHPKSPVAGKVPYPAADIARLLAPPEAENPAVKLRRLLHEARDKGSFLHSAGAYDAYTAALMTKLGFKALYGSGWQLAAT
Ga0364924_074022_545_7483300033811SedimentMAIATRPVSPNAAYPAEAVGRLFAPPESEVPALKLRRLLREARDKGTYLHTAGAYDAFTSAIMTNLGF
Ga0370504_0031632_3_2183300034349Untreated Peat SoilMATATPPVSKHAVYPRDEIAKLLAPPETEHPGTKLRRILHEARDKGSFVHTAGAYDAYTAALMTRLGFKALY
Ga0373916_0076070_318_5213300034894Sediment SlurryVPFPADELGKLLAPPETENPAVKLRRLLHEARAKGSYLHSAGAYDAYTAAIMTRLGFNALYGSGWQLA


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.