Metagenome / Metatranscriptome Family F055861

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055861
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	60 residues
Representative Sequence	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMRNSTNLVHQQYDAH
Number of Associated Samples	123
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.91 %
% of genes near scaffold ends (potentially truncated)	40.58 %
% of genes from short scaffolds (< 2000 bps)	89.86 %
Associated GOLD sequencing projects	119
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.072 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (34.058 % of family members)
Environment Ontology (ENVO)	Unclassified (28.261 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (39.130 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 75.81% β-sheet: 0.00% Coil/Unstructured: 24.19%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00486	Trans_reg_C	16.67
PF00144	Beta-lactamase	4.35
PF00141	peroxidase	2.90
PF03401	TctC	2.17
PF13924	Lipocalin_5	2.17
PF00536	SAM_1	2.17
PF00135	COesterase	1.45
PF07045	DUF1330	1.45
PF09265	Cytokin-bind	0.72
PF00293	NUDIX	0.72
PF13181	TPR_8	0.72
PF04055	Radical_SAM	0.72
PF13380	CoA_binding_2	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	4.35
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	4.35
COG2367	Beta-lactamase class A	Defense mechanisms [V]	4.35
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	2.90
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.17
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	1.45
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.45
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.07 %
Unclassified	root	N/A	44.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.07 %
Unclassified	root	N/A	44.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.07 %
Unclassified	root	N/A	44.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.30 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.29 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.17 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.90 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.72 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.80 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.07 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.17 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.90 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.72 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.07 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.90 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.72 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.72 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.07 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	2.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.90 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.72 %
Tolypothrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.07 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	2.17 %
Spirosomaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae	0.72 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.72 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.72 %
Tolypothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.07 %
Burkholderia ubonensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia ubonensis	2.17 %
Runella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Runella	0.72 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.72 %
Tolypothrix campylonemoides	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides	0.72 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.07 %
Burkholderia ubonensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia ubonensis	2.17 %
Tolypothrix campylonemoides VB511288	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	0.72 %
Runella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Runella	0.72 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.72 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig99298	Not Available	568	Open in IMG/M
2199352025\|deepsgr__Contig_45576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1098	Open in IMG/M
3300000858\|JGI10213J12805_10023655	Not Available	1224	Open in IMG/M
3300000956\|JGI10216J12902_110214246	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300002568\|C688J35102_119917463	Not Available	813	Open in IMG/M
3300004114\|Ga0062593_100393410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1235	Open in IMG/M
3300004153\|Ga0063455_100969526	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300004157\|Ga0062590_101393657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300004463\|Ga0063356_102081751	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300004479\|Ga0062595_101186046	Not Available	676	Open in IMG/M
3300004479\|Ga0062595_101757757	Not Available	587	Open in IMG/M
3300004643\|Ga0062591_100992179	Not Available	798	Open in IMG/M
3300004801\|Ga0058860_10112039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300005147\|Ga0066821_1001036	All Organisms → cellular organisms → Bacteria → Proteobacteria	1281	Open in IMG/M
3300005168\|Ga0066809_10018252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia ubonensis	1397	Open in IMG/M
3300005168\|Ga0066809_10170251	Not Available	575	Open in IMG/M
3300005339\|Ga0070660_100498389	All Organisms → cellular organisms → Bacteria → Proteobacteria	1013	Open in IMG/M
3300005434\|Ga0070709_11638668	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300005564\|Ga0070664_101051670	All Organisms → cellular organisms → Bacteria → Proteobacteria	766	Open in IMG/M
3300005577\|Ga0068857_100410811	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Runella	1261	Open in IMG/M
3300005834\|Ga0068851_10605117	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300006038\|Ga0075365_10056375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2612	Open in IMG/M
3300006042\|Ga0075368_10028642	All Organisms → cellular organisms → Bacteria → Proteobacteria	2153	Open in IMG/M
3300006051\|Ga0075364_10160349	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300006178\|Ga0075367_10363157	Not Available	914	Open in IMG/M
3300006854\|Ga0075425_100372256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1645	Open in IMG/M
3300006881\|Ga0068865_100212382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1509	Open in IMG/M
3300007788\|Ga0099795_10070058	Not Available	1321	Open in IMG/M
3300009100\|Ga0075418_10091603	All Organisms → cellular organisms → Bacteria	3230	Open in IMG/M
3300009143\|Ga0099792_10405959	All Organisms → cellular organisms → Bacteria → Proteobacteria	835	Open in IMG/M
3300009148\|Ga0105243_11463688	Not Available	706	Open in IMG/M
3300009176\|Ga0105242_10618372	Not Available	1049	Open in IMG/M
3300009176\|Ga0105242_11325413	Not Available	744	Open in IMG/M
3300009177\|Ga0105248_12945317	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300009551\|Ga0105238_11620718	Not Available	677	Open in IMG/M
3300009840\|Ga0126313_11630026	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300010040\|Ga0126308_10498788	Not Available	822	Open in IMG/M
3300010044\|Ga0126310_10975002	Not Available	666	Open in IMG/M
3300010045\|Ga0126311_11243732	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	617	Open in IMG/M
3300010373\|Ga0134128_10765047	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300011332\|Ga0126317_10633389	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300012212\|Ga0150985_101928616	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300012212\|Ga0150985_113122233	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300012212\|Ga0150985_114982277	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300012469\|Ga0150984_119852585	All Organisms → cellular organisms → Bacteria → Proteobacteria	1003	Open in IMG/M
3300012685\|Ga0137397_11274858	Not Available	524	Open in IMG/M
3300012922\|Ga0137394_11626072	Not Available	502	Open in IMG/M
3300012939\|Ga0162650_100003642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1697	Open in IMG/M
3300012951\|Ga0164300_10300858	All Organisms → cellular organisms → Bacteria → Proteobacteria	839	Open in IMG/M
3300012955\|Ga0164298_10348648	Not Available	937	Open in IMG/M
3300012955\|Ga0164298_10667485	Not Available	724	Open in IMG/M
3300012958\|Ga0164299_10184700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1190	Open in IMG/M
3300012961\|Ga0164302_10182442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1272	Open in IMG/M
3300012987\|Ga0164307_10051799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2360	Open in IMG/M
3300013297\|Ga0157378_10038556	All Organisms → cellular organisms → Bacteria → Proteobacteria	4235	Open in IMG/M
3300013306\|Ga0163162_11022485	Not Available	935	Open in IMG/M
3300013306\|Ga0163162_11373145	Not Available	804	Open in IMG/M
3300013307\|Ga0157372_12313421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia ubonensis	617	Open in IMG/M
3300014969\|Ga0157376_12706138	Not Available	536	Open in IMG/M
3300015372\|Ga0132256_100143707	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2384	Open in IMG/M
3300017965\|Ga0190266_10668289	Not Available	642	Open in IMG/M
3300018027\|Ga0184605_10083329	All Organisms → cellular organisms → Bacteria → Proteobacteria	1397	Open in IMG/M
3300018061\|Ga0184619_10238346	Not Available	836	Open in IMG/M
3300018066\|Ga0184617_1232866	Not Available	551	Open in IMG/M
3300018073\|Ga0184624_10013576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2898	Open in IMG/M
3300018073\|Ga0184624_10179688	Not Available	939	Open in IMG/M
3300018074\|Ga0184640_10049076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1741	Open in IMG/M
3300018076\|Ga0184609_10027275	All Organisms → cellular organisms → Bacteria	2320	Open in IMG/M
3300018076\|Ga0184609_10087174	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300018429\|Ga0190272_10315862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1221	Open in IMG/M
3300018465\|Ga0190269_11035604	Not Available	625	Open in IMG/M
3300018466\|Ga0190268_11308034	Not Available	612	Open in IMG/M
3300018476\|Ga0190274_10070886	All Organisms → cellular organisms → Bacteria	2632	Open in IMG/M
3300018920\|Ga0190273_10323082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia ubonensis	1045	Open in IMG/M
3300019356\|Ga0173481_10080116	Not Available	1205	Open in IMG/M
3300019356\|Ga0173481_10084035	All Organisms → cellular organisms → Bacteria → Proteobacteria	1184	Open in IMG/M
3300019767\|Ga0190267_10239263	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300019873\|Ga0193700_1069581	Not Available	524	Open in IMG/M
3300019876\|Ga0193703_1007601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1601	Open in IMG/M
3300020008\|Ga0193757_1020675	Not Available	657	Open in IMG/M
3300020015\|Ga0193734_1066983	Not Available	638	Open in IMG/M
3300021082\|Ga0210380_10179611	Not Available	954	Open in IMG/M
3300022195\|Ga0222625_1146093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	829	Open in IMG/M
3300025315\|Ga0207697_10135117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1067	Open in IMG/M
3300025907\|Ga0207645_10100895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1862	Open in IMG/M
3300025914\|Ga0207671_11059980	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300025927\|Ga0207687_10170522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1678	Open in IMG/M
3300025927\|Ga0207687_10204844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1544	Open in IMG/M
3300025932\|Ga0207690_11208722	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300025944\|Ga0207661_11442556	Not Available	631	Open in IMG/M
3300025945\|Ga0207679_11205570	Not Available	695	Open in IMG/M
3300025972\|Ga0207668_10200543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1588	Open in IMG/M
3300025981\|Ga0207640_11999022	Not Available	525	Open in IMG/M
3300026116\|Ga0207674_10524996	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1143	Open in IMG/M
3300027181\|Ga0208997_1005514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1589	Open in IMG/M
3300027512\|Ga0209179_1113133	Not Available	606	Open in IMG/M
3300027616\|Ga0209106_1022065	Not Available	1387	Open in IMG/M
3300027669\|Ga0208981_1093404	Not Available	767	Open in IMG/M
3300027738\|Ga0208989_10000279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13844	Open in IMG/M
3300027866\|Ga0209813_10152046	Not Available	830	Open in IMG/M
3300027866\|Ga0209813_10258838	Not Available	663	Open in IMG/M
3300028587\|Ga0247828_10083576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1472	Open in IMG/M
3300028704\|Ga0307321_1137482	Not Available	514	Open in IMG/M
3300028707\|Ga0307291_1173440	Not Available	553	Open in IMG/M
3300028710\|Ga0307322_10001713	All Organisms → cellular organisms → Bacteria → Proteobacteria	4509	Open in IMG/M
3300028710\|Ga0307322_10051774	Not Available	1003	Open in IMG/M
3300028711\|Ga0307293_10190870	Not Available	652	Open in IMG/M
3300028721\|Ga0307315_10111584	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300028722\|Ga0307319_10020909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2004	Open in IMG/M
3300028722\|Ga0307319_10022080	All Organisms → cellular organisms → Bacteria	1951	Open in IMG/M
3300028754\|Ga0307297_10059653	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300028784\|Ga0307282_10199370	Not Available	957	Open in IMG/M
3300028791\|Ga0307290_10312233	Not Available	575	Open in IMG/M
3300028810\|Ga0307294_10188340	Not Available	707	Open in IMG/M
3300028875\|Ga0307289_10022675	All Organisms → cellular organisms → Bacteria	2436	Open in IMG/M
3300028881\|Ga0307277_10019068	All Organisms → cellular organisms → Bacteria	2676	Open in IMG/M
3300028885\|Ga0307304_10369526	Not Available	644	Open in IMG/M
3300030902\|Ga0308202_1045050	Not Available	792	Open in IMG/M
3300030905\|Ga0308200_1040126	Not Available	840	Open in IMG/M
3300030987\|Ga0308155_1004400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	974	Open in IMG/M
3300030988\|Ga0308183_1047707	All Organisms → cellular organisms → Bacteria → Proteobacteria	849	Open in IMG/M
3300030993\|Ga0308190_1037515	Not Available	885	Open in IMG/M
3300031058\|Ga0308189_10542858	Not Available	506	Open in IMG/M
3300031093\|Ga0308197_10491026	Not Available	501	Open in IMG/M
3300031114\|Ga0308187_10373297	Not Available	556	Open in IMG/M
3300031170\|Ga0307498_10050387	Not Available	1124	Open in IMG/M
3300031226\|Ga0307497_10741871	Not Available	510	Open in IMG/M
3300031421\|Ga0308194_10083025	Not Available	890	Open in IMG/M
3300031455\|Ga0307505_10099778	All Organisms → cellular organisms → Bacteria → Proteobacteria	1303	Open in IMG/M
3300031547\|Ga0310887_10364119	Not Available	842	Open in IMG/M
3300031854\|Ga0310904_10191975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1224	Open in IMG/M
3300031854\|Ga0310904_10453651	All Organisms → cellular organisms → Bacteria → Proteobacteria	851	Open in IMG/M
3300031858\|Ga0310892_10116592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1492	Open in IMG/M
3300031944\|Ga0310884_10264751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	945	Open in IMG/M
3300032013\|Ga0310906_10408591	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	899	Open in IMG/M
3300032174\|Ga0307470_10485524	Not Available	897	Open in IMG/M
3300032205\|Ga0307472_101572396	Not Available	645	Open in IMG/M
3300034643\|Ga0370545_133872	Not Available	563	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.29%
Host-Associated	Host-Associated	28.99%
Engineered	Engineered	0.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.32%
Plants	Host-Associated → Plants	28.26%
Aquatic	Environmental → Aquatic	7.97%
Human	Host-Associated → Human	0.72%
Modeled	Engineered → Modeled	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.70%
Sediment	Environmental → Aquatic → Sediment	5.80%
Roots	Host-Associated → Plants → Roots	4.35%
Freshwater	Environmental → Aquatic → Freshwater	2.17%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.72%
Digestive System	Host-Associated → Human → Digestive System	0.72%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.80%
Loam	Environmental → Terrestrial → Soil → Loam	5.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.80%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.17%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.45%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.72%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.72%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.72%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.07%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.45%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.45%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.72%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.72%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	34.06%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.07%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.17%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.45%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.72%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.72%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.72%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027181	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0297.00006090	2166559005	Simulated	MRTIMAFGFAALLSLLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
deepsgr_00447010	2199352025	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTESGASAIRRALP
JGI10213J12805_100236552	3300000858	Soil	MRKIMTVGIAALLTLLAIAAWSNATTYSDNRVKASIASSGPINPLELMRTSIDLPQQQYDAH*
JGI10216J12902_1102142462	3300000956	Soil	MRTIMAFGFTALLALLAISVWSGPTTHSVIRAEASAASSRLINPLELMMNSKELAHQQYDAN*
C688J35102_1199174632	3300002568	Soil	MRTIMAFGFAALLALLAIGVWSGETTHSANRAEASAASSRLINPHELMRNSTNLVHQQYDAH*
Ga0062593_1003934101	3300004114	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMRNSTNLVDQQYDAN*
Ga0063455_1009695262	3300004153	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMRSSTNLVHQQYDAH*
Ga0062590_1013936572	3300004157	Soil	MRTIMAFGFTALLALLAIGVWPGATTDSVNRAEASAASSRLINPHELMRNSTNLVDQQYDAN*
Ga0063356_1020817512	3300004463	Arabidopsis Thaliana Rhizosphere	MRTVMAFGFGALLALLAISAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY*
Ga0062595_1011860461	3300004479	Soil	MRTIMAFGFTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSN
Ga0062595_1017577571	3300004479	Soil	MRTVMAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY*
Ga0062591_1009921791	3300004643	Soil	MRTIMALGFTALLALLAIGVWSGATTHSVNRAEASAASSRLVNPHELMRTSTN
Ga0058860_101120392	3300004801	Host-Associated	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVHRQYDAH*
Ga0066821_10010363	3300005147	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVHQQYDAH*
Ga0066809_100182522	3300005168	Soil	MRTIMAFGFTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDAH*
Ga0066809_101702511	3300005168	Soil	FGFAALLSLLAIGAWSSATSHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH*
Ga0070660_1004983892	3300005339	Corn Rhizosphere	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMRNSTNLMHQQYDAN*
Ga0070709_116386681	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	HMRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVHQQYDAH*
Ga0070664_1010516703	3300005564	Corn Rhizosphere	IMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLVNPHELMRTSTNLVHQQYDAH*
Ga0068857_1004108111	3300005577	Corn Rhizosphere	VMAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY*
Ga0068851_106051172	3300005834	Corn Rhizosphere	TALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVHRQYDAH*
Ga0075365_100563752	3300006038	Populus Endosphere	MRTIMALGLTALLALLAIGVWAGATTRSVNRAEASAASSVPINSLELMRNSTELAHQQYDAN*
Ga0075368_100286422	3300006042	Populus Endosphere	MRTIMALGFTALLALLAIGVWSGATTHSVNRAEASAASSRLVNPHELMRTSTNLVHQQYDAH*
Ga0075364_101603492	3300006051	Populus Endosphere	MRTIMALGFTASLALLAIGVWSGATTHSVNRAEASAASSRLVNPHELMRTSTNLVHQQYDAH*
Ga0075367_103631573	3300006178	Populus Endosphere	MRTIMAFGITGLLALLAIGAWAGATTHSGKRAEASAMPGAATNPLELMRNSKDLAHQQYDAY*
Ga0075425_1003722563	3300006854	Populus Rhizosphere	MRTVMAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKD
Ga0068865_1002123821	3300006881	Miscanthus Rhizosphere	TIMAFGFTALLALLAIGVWPGATTDSVNRAEASAASSRLINPHELMRNSTNLVDQQYDAN
Ga0099795_100700582	3300007788	Vadose Zone Soil	MRTIMAFGFAALLALLAIGAWSSATTHSVDRAEASAASSWPINPLELMRNSKDLAHQQYDAH*
Ga0075418_100916034	3300009100	Populus Rhizosphere	MAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY*
Ga0099792_104059591	3300009143	Vadose Zone Soil	MRTIMAFGFAALLSLLAIGAWSSATTHSVDRAEASAASSWPINPLELMRNSKDLAHQQYDAH*
Ga0105243_114636882	3300009148	Miscanthus Rhizosphere	DHMRTIMAFGFTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDAH*
Ga0105242_106183721	3300009176	Miscanthus Rhizosphere	MRTIMAFGFTALLALLAIGVWSDATTHSVNRAEASAESSRLINPHELMRNSTNLVYQQYDAN*
Ga0105242_113254132	3300009176	Miscanthus Rhizosphere	FTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDAH*
Ga0105248_129453171	3300009177	Switchgrass Rhizosphere	MRTIMAFGFTALLALLAIGVWSDATTHSVNRAEASAESSRLINPYELIRNSTNLERQKYDANCLRIPN*
Ga0105238_116207181	3300009551	Corn Rhizosphere	HMRTIMAFGFTALLALLAIGVWSGATTDSVDRAEASAASSRLINPHELMSNSTDLVHQQYDAH*
Ga0126313_116300261	3300009840	Serpentine Soil	TALLALLAISVWSGPTTHSVIRAEASAASSRLINPLELMMNSKELAHQQYDAN*
Ga0126308_104987882	3300010040	Serpentine Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPLELMRNSTELAHQQYDAH*
Ga0126310_109750022	3300010044	Serpentine Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMRNSTNLVHQQYDAN*
Ga0126311_112437322	3300010045	Serpentine Soil	EGSRHMRTFMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMRNSTNLVHQQYDAN*
Ga0134128_107650471	3300010373	Terrestrial Soil	MRTIMAFGFTALLALLAIGVWSGATTDSVDRAEASAASSRLINPHELMRNSTNLVDQQYDAN*
Ga0126317_106333891	3300011332	Soil	IRSDHMRTIMAFGFTALLALLAIGVWSDATTHSVNRAEASAASSRLINPLELMRNSTELAHQQYDAH*
Ga0150985_1019286161	3300012212	Avena Fatua Rhizosphere	MRTIMAFGFTALLVLLAVGVWSSATTHSVNRAEASAASSRLINPDELMRNSTKLLHQQYDAN*
Ga0150985_1131222332	3300012212	Avena Fatua Rhizosphere	MRTIMAFGFTALLVLLAVGVWSSATTHSVNRAEASAASSRLINPHELMRNSTNLLHQQYDAN*
Ga0150985_1149822771	3300012212	Avena Fatua Rhizosphere	LALLAIGVWSGATPHSVDRAEASAASSRLINPLELMRNSTELAHQQYDAH*
Ga0150984_1198525852	3300012469	Avena Fatua Rhizosphere	MRTIMAFGFTALLALLAIGVWSGATTHSANRAEASAASSRLINPHELMRNSANLAHQQYDAH*
Ga0137397_112748582	3300012685	Vadose Zone Soil	MRTIMAFGFAALLALLAIGAWSGATTHSVNRADASDAPINPLELMRNSKDLAHQQYDAH*
Ga0137394_116260722	3300012922	Vadose Zone Soil	MRTIMAFGFAALLSLLAIGAWSSATTHSANRAEASAASSWPINPLELMRNSKDLAHQQYDAH*
Ga0162650_1000036423	3300012939	Soil	MRTIMAFGFTALLALLAISVWSGPTTHSVIRAEASAASSRLINPLELMMNAKELAHQQYDAN*
Ga0164300_103008582	3300012951	Soil	MRTIMAFGFTALLALLAIGVWSDATTHSVNRAEASAESSRLINPHELMRNSTNLARQQYDAN*
Ga0164298_103486481	3300012955	Soil	MRTIMALGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMRTSTNLVHQQYDAH*
Ga0164298_106674851	3300012955	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMSNSTNLVHQQYDAH*
Ga0164299_101847001	3300012958	Soil	MAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY
Ga0164302_101824423	3300012961	Soil	MRTVMAFGFGALLALLAIGSWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY*
Ga0164307_100517991	3300012987	Soil	TIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVHQQYDAH
Ga0157378_100385565	3300013297	Miscanthus Rhizosphere	MRTIMAFGFTALLALLAIGVWSDATTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDAH*
Ga0163162_110224852	3300013306	Switchgrass Rhizosphere	MRTVMAFGFGALLALLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNAKDLAHQQYDAY*
Ga0163162_113731452	3300013306	Switchgrass Rhizosphere	AFGFTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDAH*
Ga0157372_123134212	3300013307	Corn Rhizosphere	DHMRTIMAFGFTALLALLAIGVWPGATTDSVNRAEASAASSRLINPHELMRNSTNLVDQQYDAN*
Ga0157376_127061382	3300014969	Miscanthus Rhizosphere	TALLALLAIGVWSDATTHSVNRAEASAESSRLINPHELMRNSTNLMHQQYDAN*
Ga0132256_1001437072	3300015372	Arabidopsis Rhizosphere	MAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKGLAHQQYDAY*
Ga0190266_106682892	3300017965	Soil	MRTIMAFGFAALLALLAIGVWSGETTHSANRAEASAASSRLINPHELMRNSTNLLHQQYDAN
Ga0184605_100833292	3300018027	Groundwater Sediment	MRTIMAFGFAALLSLLAIGAWSSATTHSVNRAEASAASGWPINPLELMRNSKDLAHQQYDAH
Ga0184619_102383461	3300018061	Groundwater Sediment	MRTIMAFGFAALLSLLSNGSWSSATTHSANRAEASAASGWPINPLELMRNSKDLAHQQYD
Ga0184617_12328661	3300018066	Groundwater Sediment	MRTIMAFGFTALLALLAIGVWSGATSHSVNRAEASAASSRLINPHELMRNSTNLVHQQYDAH
Ga0184624_100135762	3300018073	Groundwater Sediment	MRTIMAFGFAALLSLLAIGAWSSATTHSVNRAEASAVSSWPINPLELMRNSKDLAHQQYDAH
Ga0184624_101796881	3300018073	Groundwater Sediment	MRTIMAFGFAALLALLAIGVWSGETTHSANRAEASAASSRLINPHELMRNSTNLVHQQYDAH
Ga0184640_100490761	3300018074	Groundwater Sediment	MRTIMAFGFAALLSLLAIGAWSSATTHSANRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0184609_100272753	3300018076	Groundwater Sediment	MRTIMAFGFAALLALLAIGAWSGATTHSVDRADASAASINPLELMRNSKDLPHQQYDAH
Ga0184609_100871743	3300018076	Groundwater Sediment	MRTIMAFGFAALLSLLAIGAWSSATTHSANRAEASAASGWPINPLELMRNSKDLAHQQYDAH
Ga0190272_103158623	3300018429	Soil	MRTIMAFGFTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSNSTNLVHQQYDAH
Ga0190269_110356041	3300018465	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMRNSTN
Ga0190268_113080341	3300018466	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMSNSTNLVHQQYDAH
Ga0190274_100708862	3300018476	Soil	MRTIMAFGFTALLVLLAIGVWSSATTHSVNRAEASAASSRLINPHELMRNSTNLLHQQYDAN
Ga0190273_103230822	3300018920	Soil	MRTIMAFGFTALLALLAIGMWSGATTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDAH
Ga0173481_100801161	3300019356	Soil	MRTVMAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY
Ga0173481_100840353	3300019356	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVHRQYDAH
Ga0190267_102392632	3300019767	Soil	MRTIMAFGFTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDAH
Ga0193700_10695812	3300019873	Soil	MRTIMAFGFAALLSLLAIGAWSNATTHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0193703_10076013	3300019876	Soil	MRTIMAFGFAALLALLAIGVWSGETTHSANRAEASAASSRLINPHELMRNSTNLV
Ga0193757_10206752	3300020008	Soil	MRTIMAFGFAALLSLLAIGAWSSATTHSVNRAEASAASGWPINPLELMRNSKDLAHQQYD
Ga0193734_10669832	3300020015	Soil	MRKIMAFGFAALLSLLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0210380_101796111	3300021082	Groundwater Sediment	FVFAALLSLLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0222625_11460931	3300022195	Groundwater Sediment	TIMAFGFAALLSLLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0207697_101351171	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MRTIMAFGFTALLALLAIGVWSGATTRSVDRAEASAASSRLINPHELMSNSTNLVHQQYDAH
Ga0207645_101008952	3300025907	Miscanthus Rhizosphere	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMRNSTNLVDQQYDAN
Ga0207671_110599801	3300025914	Corn Rhizosphere	MEIAGEGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY
Ga0207687_101705221	3300025927	Miscanthus Rhizosphere	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVH
Ga0207687_102048441	3300025927	Miscanthus Rhizosphere	MAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVHQQYDAH
Ga0207690_112087221	3300025932	Corn Rhizosphere	TIMAFGFTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDA
Ga0207661_114425561	3300025944	Corn Rhizosphere	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNS
Ga0207679_112055703	3300025945	Corn Rhizosphere	RHMRTIMALGFTALLALLAIGVWSGATTHSVNRAEASAASSRLVNPHELMRTSTNLVHQQYDAH
Ga0207668_102005431	3300025972	Switchgrass Rhizosphere	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTNLVHQQYD
Ga0207640_119990221	3300025981	Corn Rhizosphere	TIMALGFTALLALLAIGVWSGATTHSVNRAEASAASSRLVNPHELMRTSTNLVHQQYDAH
Ga0207674_105249962	3300026116	Corn Rhizosphere	VMAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY
Ga0208997_10055141	3300027181	Forest Soil	MRTIMAFGFAALLSLLAIGAWSNATTHSVNRAEASSASSWPINLLELMRNSKDLAHQQYDAH
Ga0209179_11131331	3300027512	Vadose Zone Soil	MRTIMAFGFAALLALLAIGAWSGATTHSVNRADASDAPINPLELMRNSKDLAHQQYDAH
Ga0209106_10220651	3300027616	Forest Soil	MRTIMAFGFAALLALLAIGTWSSATINSVNRAEASASSRPINPLELMTNAKDLAHQEYDA
Ga0208981_10934041	3300027669	Forest Soil	MRTIMAFGFAALLVLLAIGAWSGATTHSVNRADASDAPINPLELMRNSKDLAHQQYDAH
Ga0208989_100002797	3300027738	Forest Soil	MRTIMAFGFAALLALLAIGTWSSATINSVNRAEASASSRPINPLELMTNAKDLAHQE
Ga0209813_101520461	3300027866	Populus Endosphere	MRTIMALGFTALLALLAIGVWSGATTHSVNRAEASAASSRLVNPHELMRTSTNLVHQQYDAH
Ga0209813_102588382	3300027866	Populus Endosphere	MRTIMALGLTALLALLAIGVWAGATTRSVNRAEASAASSVPINSLELMRNSTELAHQQYDAN
Ga0247828_100835763	3300028587	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMSNSTDLVHQQYDAH
Ga0307321_11374822	3300028704	Soil	MRTIMAFGFTALLVLLAVGVWSSATTHSVNRAEASAASSRLINPHELMRNSTNLLHQQYDAN
Ga0307291_11734402	3300028707	Soil	MRTIMAFGFAALLALLAIGVWSGETTHSANRAEASAASSRLINPHELMSNSTNLVHQQYDAH
Ga0307322_100017135	3300028710	Soil	MRTIMAFVFAALLSLLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0307322_100517743	3300028710	Soil	MRTIMAFGFTALLVLLAIGVWSSATTHSVNRAEASAASSRLINPHELMRNSTNLLHQQY
Ga0307293_101908701	3300028711	Soil	MRTIMAFGFAALLALLAIGAWSGATTHSVDRADASAASINPLELMRNSKD
Ga0307315_101115842	3300028721	Soil	SYHMRTIMAFVFAALLSLLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0307319_100209093	3300028722	Soil	TIMAFGFAALLSLLAIGAWSSATTHSVNRAEASAASGWPINPLELMRNSKDLAHQQYDAH
Ga0307319_100220803	3300028722	Soil	AFGFAALLSLLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0307297_100596532	3300028754	Soil	MRTIMAFGFAALLALLAIGVWSGETTHSANRAEASAASSRLINPHELMRNSTNLVHQQYDAN
Ga0307282_101993702	3300028784	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMRNSTNLVHQQYDAH
Ga0307290_103122332	3300028791	Soil	MRTIMAFGFAALLSLLAIGAWSNATTHSVNRAEASAASSWPINPLELMRNSKDL
Ga0307294_101883402	3300028810	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMRNSTNL
Ga0307289_100226751	3300028875	Soil	MRTIMAFGFAALLSLLAIGAWSSATTHSANRAEASAASSWPINPLELMRNSKDLAHQQYD
Ga0307277_100190685	3300028881	Soil	MRTIMAFVFAALLSLLAIGAWSSATTHSVNRAEASAASSWPINPLELMRNS
Ga0307304_103695262	3300028885	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMSNST
Ga0308202_10450502	3300030902	Soil	MRTIMAFGFTALLALLAISVWSGPTTHSVIRAEASAASSRLINPLELMMNSKELAHQQYDAN
Ga0308200_10401261	3300030905	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSWPINPLELMMNSKELAHQQYDAN
Ga0308155_10044002	3300030987	Soil	TIMAFGFAALLALLAIGAWSGATTHSVDRADASAASINPLELMRNSKDLAHQQYDAH
Ga0308183_10477072	3300030988	Soil	MRTIMAFGFAALLSLLAIGAWFSATTHSVNRAEASAASGWPINPLELMRNSKDLAHQQYDAH
Ga0308190_10375152	3300030993	Soil	MRTIMAFGFAALLSLLAIGAWSNATTHSVNRAEASAASGWPINPLELMRNSKDLAHQQYDAH
Ga0308189_105428581	3300031058	Soil	MRTIMAFGFAALLALLAIGAWSGATTHSVNRADASAAPINPLELMRNSKDLAHQQYDAH
Ga0308197_104910261	3300031093	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSANRAEASAASSRLINPHELMRNSTNL
Ga0308187_103732971	3300031114	Soil	MRTIMAFGFAALLALLAIGVWSGETTHSANRAEASAASSRLINPHELMRNSTNL
Ga0307498_100503873	3300031170	Soil	MRTIMAFGFAALLSFLAIGAWSSATTNSVNRAEASAASSWPINPLELMRNSKDLAHQQYDAH
Ga0307497_107418711	3300031226	Soil	MRTIMAFGFAALLALLAIGAWSEATTHSVNRAEASATSINPLELMRNSKDLPHQQYDAH
Ga0308194_100830252	3300031421	Soil	MRTIMAFGFAALLALLAIGAWSGATTHSVNRADASDAPINPLGLMRNSKDLAHQQYDAH
Ga0307505_100997782	3300031455	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSANRAEASAASSRLINPHELMSNSTNLVHQQYDAH
Ga0310887_103641192	3300031547	Soil	MRTIMAFGFTALLALLAIGVWSDATTHSVNRAEASAESSRLINPHELMSNSTNLVHQQYDAH
Ga0310904_101919753	3300031854	Soil	HRMRTVMAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAHQQYDAY
Ga0310904_104536512	3300031854	Soil	MRTIMAFGFTALLALLAIGVWSDATTHSVNRAEASAESSRLINPHELMRNSTNLARQQYDAN
Ga0310892_101165921	3300031858	Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEASAASSRLINPHELMRNSTNLARQQYDAN
Ga0310884_102647513	3300031944	Soil	MRTIMAFGFTALLALLAIGVWSGATTTHSVNRAEASAASSRLINPHELMSNS
Ga0310906_104085911	3300032013	Soil	MRTVMAFGFGALLALLAIGAWSSATTTSVNRAEASAASSGPINPLELMRNAKDLAPQQYDAY
Ga0307470_104855242	3300032174	Hardwood Forest Soil	MRTIMAFGFTALLALLATGVWSGATTTHSVNRAEASAASSRLINPHELMSNSTDLVHQQYDAH
Ga0307472_1015723961	3300032205	Hardwood Forest Soil	MRTIMAFGFTALLALLAIGVWSGATTHSVDRAEATAASSRLINPHELMSNSTNLVHQQYDAH
Ga0370545_133872_238_426	3300034643	Soil	MRTIMAFGFAALLSPLAIGAWSSATTHSVNRAEASAASNWPINPLELMRNSKDLAHQQYDAH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055861

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences