Metagenome / Metatranscriptome Family F055733

Basic Information
Family ID	F055733
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	47 residues
Representative Sequence	MTPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEANGLKYIVIENKED
Number of Associated Samples	105
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	13.77 %
% of genes near scaffold ends (potentially truncated)	23.19 %
% of genes from short scaffolds (< 2000 bps)	74.64 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (48.551 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (17.391 % of family members)
Environment Ontology (ENVO)	Unclassified (68.116 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (66.667 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72. 12200080864 2JGI12421J11937_1000144725 3B570J13895_10016268 4B570J14230_100065597 5B570J29624_1011197 6B570J29032_1095351421 7B570J29032_1096909443 8B570J29032_1097297354 9B570J40625_10001400020 10B570J40625_1014769821 11JGI25908J49247_100583021 12JGI25910J50241_100337652 13JGI25909J50240_10781063 14JGI25911J50253_100448241 15JGI25930J51415_10517832 16Ga0007856_10016376 17Ga0065166_101315964 18Ga0065166_103229133 19Ga0007787_100950303 20Ga0068876_102515003 21Ga0049081_101130451 22Ga0049080_100920952 23Ga0078894_105526714 24Ga0078894_108403343 25Ga0078894_111428512 26Ga0070744_100099311 27Ga0102874_11974942 28Ga0102879_11406531 29Ga0102817_11619702 30Ga0102917_13458762 31Ga0102919_11367581 32Ga0102921_10685301 33Ga0102923_10588392 34Ga0102896_11939251 35Ga0102863_10377164 36Ga0102870_10415651 37Ga0102895_10948923 38Ga0102903_10258161 39Ga0102859_10661182 40Ga0114340_10394083 41Ga0114341_104258402 42Ga0114336_11656122 43Ga0114336_13642892 44Ga0104242_10402792 45Ga0102829_10162667 46Ga0102829_11502251 47Ga0102830_10364194 48Ga0114973_101354501 49Ga0114973_104766772 50Ga0114962_100330318 51Ga0114980_100749812 52Ga0114980_101058594 53Ga0114968_101952604 54Ga0114977_100102149 55Ga0114981_101895832 56Ga0114966_104369922 57Ga0114966_104854891 58Ga0114979_101318933 59Ga0114969_101275691 60Ga0114974_101894014 61Ga0114976_104354792 62Ga0114972_100334368 63Ga0114982_100300415 64Ga0114964_105817472 65Ga0114967_102162021 66Ga0133913_106000766 67Ga0151620_12463592 68Ga0164293_101159563 69Ga0170791_116231953 70Ga0181357_13146201 71Ga0181346_10300672 72Ga0211732_10903481 73Ga0211732_11631801 74Ga0211732_11821944 75Ga0211732_13978003 76Ga0211736_103087094 77Ga0211736_103661864 78Ga0211736_103781401 79Ga0211736_105980544 80Ga0211736_106670233 81Ga0211736_108847241 82Ga0211736_108909441 83Ga0211734_102018871 84Ga0211734_104231504 85Ga0211733_102564803 86Ga0211733_105083541 87Ga0211726_101129256 88Ga0211729_114887604 89Ga0208234_10242421 90Ga0208232_10011638 91Ga0208232_10265323 92Ga0208599_10139691 93Ga0208082_10345921 94Ga0208485_10304975 95Ga0214163_10136304 96Ga0214163_10756971 97Ga0222713_100947584 98Ga0222713_102286214 99Ga0222712_100896925 100Ga0222712_103412522 101Ga0222712_104570782 102Ga0222712_106670022 103Ga0214923_1000461314 104Ga0244775_106986263 105Ga0244776_100572242 106Ga0207957_100038417 107Ga0255166_10524392 108Ga0255074_100048118 109Ga0208923_10627391 110Ga0208966_10490442 111Ga0255118_10187415 112Ga0255088_10063354 113Ga0208974_100177417 114Ga0208960_10530392 115Ga0209599_100247603 116Ga0209599_100305885 117Ga0209297_10606581 118Ga0209087_10792414 119Ga0209597_11383264 120Ga0209596_100713418 121Ga0209400_10089886 122Ga0209401_11720731 123Ga0315909_101582021 124Ga0334992_0299280_615_752 125Ga0334992_0514242_383_514 126Ga0334996_0000114_34817_34954 127Ga0334996_0239517_1_144 128Ga0334979_0065433_2208_2321 129Ga0334985_0125649_1_105 130Ga0334995_0442327_304_441 131Ga0335020_0055367_1695_1814 132Ga0335020_0409154_523_651 133Ga0335022_0599790_142_279 134Ga0335029_0465715_2_115 135Ga0335029_0481806_7_168 136Ga0335035_0063315_451_588 137Ga0335055_0310936_4_204 138Ga0335060_0551103_447_587
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72. 12200080864 2B570J29624_1011197 3B570J29032_1095351421 4JGI25909J50240_10781063 5JGI25930J51415_10517832 6Ga0007856_10016376 7Ga0102829_11502251 8Ga0214163_10756971 9Ga0222713_100947584
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 1Ga0049080_100920952 22200080864 3JGI25930J51415_10517832 4Ga0078894_105526714 5Ga0078894_111428512 6Ga0102896_11939251 7Ga0102859_10661182 8Ga0114341_104258402 9Ga0104242_10402792 10Ga0114982_100300415 11Ga0133913_106000766 12Ga0181357_13146201 13Ga0222713_102286214 14Ga0222712_104570782 15Ga0207957_100038417 16Ga0255074_100048118 17Ga0334996_0000114_34817_34954
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.32% β-sheet: 19.74% Coil/Unstructured: 53.95%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00160	Pro_isomerase	38.41
PF00166	Cpn10	5.07
PF03721	UDPG_MGDP_dh_N	2.90
PF13578	Methyltransf_24	2.90
PF05050	Methyltransf_21	2.17
PF00984	UDPG_MGDP_dh	1.45
PF04820	Trp_halogenase	1.45
PF01145	Band_7	0.72
PF10688	Imp-YgjV	0.72
PF00149	Metallophos	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0652	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	Posttranslational modification, protein turnover, chaperones [O]	38.41
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	5.07
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	4.35
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	4.35
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.90
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	2.90
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	2.90
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.72

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.45 %
Unclassified	root	N/A	48.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	27.54 %
Unclassified	root	N/A	48.55 %
Viruses	superkingdom	All Organisms → Viruses	23.91 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	2.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.91 %
Unclassified	root	N/A	48.55 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	22.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.91 %
Unclassified	root	N/A	48.55 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	2.17 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2.17 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	22.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.91 %
Unclassified	root	N/A	48.55 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2.17 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	22.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.91 %
Unclassified	root	N/A	48.55 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.91 %
Saprospiria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria	1.45 %
Unclassified	root	N/A	48.55 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.91 %
Saprospirales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales	1.45 %
Unclassified	root	N/A	48.55 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.91 %
Unclassified	root	N/A	48.55 %
unclassified Saprospirales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales	1.45 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.91 %
Saprospirales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1.45 %
Unclassified	root	N/A	48.55 %

Scaffold	Taxonomy	Length	IMG/M Link
2199352004\|2199903663	Not Available	816	Open in IMG/M
3300000756\|JGI12421J11937_10001447	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9589	Open in IMG/M
3300001274\|B570J13895_1001626	All Organisms → Viruses → Predicted Viral	3101	Open in IMG/M
3300001282\|B570J14230_10006559	All Organisms → Viruses → Predicted Viral	4584	Open in IMG/M
3300002363\|B570J29624_101119	All Organisms → Viruses → Predicted Viral	2066	Open in IMG/M
3300002408\|B570J29032_109535142	Not Available	847	Open in IMG/M
3300002408\|B570J29032_109690944	All Organisms → Viruses → Predicted Viral	1065	Open in IMG/M
3300002408\|B570J29032_109729735	All Organisms → Viruses → Predicted Viral	1151	Open in IMG/M
3300002835\|B570J40625_100014000	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	14178	Open in IMG/M
3300002835\|B570J40625_101476982	Not Available	558	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.83%
Terrestrial	Environmental → Terrestrial	2.17%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.17%
Freshwater	Environmental → Aquatic → Freshwater	78.99%
Marine	Environmental → Aquatic → Marine	18.84%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	13.04%
Lake	Environmental → Aquatic → Freshwater → Lake	46.38%
Lentic	Environmental → Aquatic → Freshwater → Lentic	28.26%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.72%
River	Environmental → Aquatic → Freshwater → River	2.90%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	9.42%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	13.04%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	46.38%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	18.12%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.80%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.90%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.17%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	13.04%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.45%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.35%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	13.77%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	12.32%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	9.42%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	4.35%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.90%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.72%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.72%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.72%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	17.39%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	10.14%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.62%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.90%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352004	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300001274	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental	Open in IMG/M
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300002363	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M

Showing 1 to 10 of 105 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2200080864	2199352004	Freshwater	MAPIIYMVQTMVWIAHNDRKRADSISRQITRVSESNGLKYIVIEN
JGI12421J11937_1000144725	3300000756	Freshwater And Sediment	MTPIIYMVQTMLWIAHNDKKRADTISKQVTRFGEVNGLKYIVIEN*
B570J13895_10016268	3300001274	Freshwater	MVQTMVWIAHNDRKRADSISRQITRVSESNGLKYIVIEN*
B570J14230_100065597	3300001282	Freshwater	MAPIIYMVQTMVWIAHNDRKRADSISRQITRVSESNGLKYIVIEN*
B570J29624_1011197	3300002363	Freshwater	YLMTYLKTISMTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKED*
B570J29032_1095351421	3300002408	Freshwater	MTAIIYMVQTMLWIAHNDRKRAEQISKQVTRTGEANGIRYIVIEN*
B570J29032_1096909443	3300002408	Freshwater	MTPIIYMVQTMLWIAHNDRKRAEQISKQVTRTGEANGLRYIVIEN*
B570J29032_1097297354	3300002408	Freshwater	MAPIIYMVQTMVWIAHNDRKRADNISKQVTRFGEANGLKYIVIENKED*
B570J40625_10001400020	3300002835	Freshwater	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKED*
B570J40625_1014769821	3300002835	Freshwater	MTPIIYMVQTMLWIAHNDKKRADTISKQVTRFGEANGLKYIVIET*
JGI25908J49247_100583021	3300003277	Freshwater Lake	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKED*
JGI25910J50241_100337652	3300003388	Freshwater Lake	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIEN*
JGI25909J50240_10781063	3300003393	Freshwater Lake	YMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKED*
JGI25911J50253_100448241	3300003411	Freshwater Lake	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIEN
JGI25930J51415_10517832	3300003499	Freshwater Lake	MAPIIYMTQTLLWIAHNDRERAEQISKQVTRVGEANGLRYVVIENKNQTNDIKKS*
Ga0007856_10016376	3300003815	Freshwater	MAPIVYMVQTMLWIAHKDMNRADEISKKVSRVEEVNGLKYIVIEN*
Ga0065166_101315964	3300004112	Freshwater Lake	MVQTMVWIAHNDRKRADNISKQVTRFGEANGLKYIVIENKED*
Ga0065166_103229133	3300004112	Freshwater Lake	MVQTMLWIAHNDRKRADNISKQITRIGEANGLKYIVIEN*
Ga0007787_100950303	3300004240	Freshwater Lake	MAPIIYMVQTMVWIAHNDRKQADNISKQVTRFGEANGLRYIVIENKED*
Ga0068876_102515003	3300005527	Freshwater Lake	MTQTLLWIAHNDRERAEQISKQVTRVGEANGLRYVVIENKNQTNDIKKS*
Ga0049081_101130451	3300005581	Freshwater Lentic	MTPIIYMVQTMVWIAHNDRKRADSISKKVTRFGEANGLKYIVIEN*
Ga0049080_100920952	3300005582	Freshwater Lentic	MTPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEANGLKYIVIENKED*
Ga0078894_105526714	3300005662	Freshwater Lake	MVQTMLWIAHNDRKQADSISKKMTRVGEANGLKYIVIEN*
Ga0078894_108403343	3300005662	Freshwater Lake	MTPIIYMVQTMLWIAHNDRKRAEEITKQVTRTGEANGIRYIVIEN*
Ga0078894_111428512	3300005662	Freshwater Lake	MAPIIYMVQTMLWIAHNDRKRADNISKQITRIGEANGLKYIVIEN*
Ga0070744_100099311	3300006484	Estuarine	LVKELKLDYLMTYLKTISMTPIIYMVQTMVWIAHNDRKRADAISKQVTRVGEANGLKYIVIENKED*
Ga0102874_11974942	3300007546	Estuarine	MAPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEANGLKYIVIENKED*
Ga0102879_11406531	3300007549	Estuarine	TMVWIAHNDRKRADTISKQVTRFGEVNGLKYIVIENKED*
Ga0102817_11619702	3300007555	Estuarine	QTMVWIAHNDRKRADTISKQVTRFGEVNGLKYIVIENKED*
Ga0102917_13458762	3300007590	Estuarine	MTPIIYMVQTMVWIAHNDRKRAENISKQVTRFGEANGLKYIVIENKED*
Ga0102919_11367581	3300007597	Estuarine	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEANGLKYIVIENKED*
Ga0102921_10685301	3300007603	Estuarine	YMVQTMLWIAHNDKKRADSISKQVTRFGEVNGLKYIVIENKED*
Ga0102923_10588392	3300007606	Estuarine	MTLIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKED*
Ga0102896_11939251	3300007618	Estuarine	MTPIIYMVQTMLWIAHNDRKRAEQISKQVTRTGEVNGIRYIVIEGD*
Ga0102863_10377164	3300007622	Estuarine	MAPIIYMIQTMVWIAHNDRKIADNISKKMTRVGEANGLKYIVIEN*
Ga0102870_10415651	3300007625	Estuarine	MTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEANGLKYIVIENKED*
Ga0102895_10948923	3300007629	Estuarine	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKE
Ga0102903_10258161	3300007630	Estuarine	MTPIIYMVQTMVWIAHNDRKRAEQISKQVARTGEANGIRYIVIEGD*
Ga0102859_10661182	3300007708	Estuarine	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEVNGLKYIVIENKED*
Ga0114340_10394083	3300008107	Freshwater, Plankton	MAPIIYMVQTMLWIAHNDRKQADSISKKMTRVGEANGLKYIVIEN*
Ga0114341_104258402	3300008108	Freshwater, Plankton	MAPIIYMVQTMVWIAHNDRKQADNISKQVTRFGEANGLRYIVIESKED*
Ga0114336_11656122	3300008261	Freshwater, Plankton	MAPIIYMVQTMLWIAHNDRKRADTISKQVTRFGEANGLKYIVIENKED*
Ga0114336_13642892	3300008261	Freshwater, Plankton	MAPIIYMVQTMVWIAHNDRKRADNISKQVTRFGEANGLKYIVIEN*
Ga0104242_10402792	3300008962	Freshwater	MAPIIYMTQTLLWIAHNDRKRADEISKQVTRIGEAGGLRYVVIENKNEANG*
Ga0102829_10162667	3300009026	Estuarine	MTPIIYMVQTMLWIAHNDKKRADSISKQVTRFGEVNGLKYIVIENKED*
Ga0102829_11502251	3300009026	Estuarine	MAPIIYMVQTRLWIAHNDRKRADSISKKVTRFGEANGLK
Ga0102830_10364194	3300009059	Estuarine	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEDNGLKYIVIENKED*
Ga0114973_101354501	3300009068	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEVNGLKYIVIENKED*
Ga0114973_104766772	3300009068	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRFDEANGLKYIVIEN*
Ga0114962_100330318	3300009151	Freshwater Lake	MTYLKTISMTPIIYMVQTMLWIAHNDRKQADTISRQVTRVGEVNGLKYIIIENKED*
Ga0114980_100749812	3300009152	Freshwater Lake	MTPIIYMIQTMLWIAHNDRKRADTISKQVTRFGEANGLKYIVIEN*
Ga0114980_101058594	3300009152	Freshwater Lake	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADAISKQVTRVGEANGLKYIVIENKED*
Ga0114968_101952604	3300009155	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEANGLKYIVIEN*
Ga0114977_100102149	3300009158	Freshwater Lake	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKED*
Ga0114981_101895832	3300009160	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRVGEANGLKYIVIENKED*
Ga0114966_104369922	3300009161	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADIISKQVTRFGEVNGLKYIVIENKED*
Ga0114966_104854891	3300009161	Freshwater Lake	ELKLDYLMTYLKTISMTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEANGLKYIVIEN
Ga0114979_101318933	3300009180	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADNISKQVTRFGEANGLKYIVIENKED*
Ga0114969_101275691	3300009181	Freshwater Lake	MTPIIYMIQTMLWIAHNDRKRADTISKQVTRFGEVNGLKYIVIENKED*
Ga0114974_101894014	3300009183	Freshwater Lake	MTPIIYMIQTMLWIAHNDRKRADTISKQVTRVGEANGLKYIVIE
Ga0114976_104354792	3300009184	Freshwater Lake	MVQTMVWIAHNDRKRADIISKQVTRFGEANGLKYIVIENKED*
Ga0114972_100334368	3300009187	Freshwater Lake	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEVNGLKYIVIENKED*
Ga0114982_100300415	3300009419	Deep Subsurface	MTPIIYMAQTMLWIAHNDSKRVEQISKQVTRVGEANGIRYIVIES*
Ga0114964_105817472	3300010157	Freshwater Lake	MTPIIYMVQTMLWIAHKDRKLADTISKQVTRFGEANGLKYIVIENKED*
Ga0114967_102162021	3300010160	Freshwater Lake	DYLMTYLKTISMTPIIYMVQTMVWITHNDRKRADTISKQVTRVGEVNGLKYIVIENKED*
Ga0133913_106000766	3300010885	Freshwater Lake	MAPIIYMVQTMLWIAHNDRKQADTISRQVTRVGEVNGLKYIIIENKED*
Ga0151620_12463592	3300011268	Freshwater	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENK
Ga0164293_101159563	3300013004	Freshwater	MAPIIYMVQTMLWIAHNDRKRADSISKQITRIGEANGLKYIVIEN*
Ga0170791_116231953	3300013295	Freshwater	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEANGLKYIVIEN*
Ga0181357_13146201	3300017777	Freshwater Lake	MTPIIYMVQTMLWIAHNDRKRAEQISKKVTRVGEANGLKYIVIENKED
Ga0181346_10300672	3300017780	Freshwater Lake	MAPIIYMVQTMLWIAHNDRKRADSISKKVTGFGEANGLKYIVIEN
Ga0211732_10903481	3300020141	Freshwater	MVQTMVWIAHNDRKRADNISKQVTRFGEANGLKYIVIENKED
Ga0211732_11631801	3300020141	Freshwater	MTPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEANGLKYIVIENKED
Ga0211732_11821944	3300020141	Freshwater	MAPIIYMIQTMVWIAHNDRKRAEQISKQVTRVGEANGLKYIVIENKED
Ga0211732_13978003	3300020141	Freshwater	MTPIIYMVQTMVWIAHNDRKRADTISKKVTRFGEVNGLKYIVIENKED
Ga0211736_103087094	3300020151	Freshwater	MTPIIYMVQTMVWIAHNDRKRADEITKQVTRFGEVNGLKYIVIEN
Ga0211736_103661864	3300020151	Freshwater	MTPIIYMVQTMVWIAHNDRKRAELISKQVTRFGEANGLKYIVIEN
Ga0211736_103781401	3300020151	Freshwater	MTPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEVNGLKYIVIENKED
Ga0211736_105980544	3300020151	Freshwater	MAPIIYMIQTMVWIAHNDRKIADNISKKMTRIGEANGLKYIVIEN
Ga0211736_106670233	3300020151	Freshwater	MTPIIYMVQTMLWIAHNDRKRAEHISKKVTRVGEAN
Ga0211736_108847241	3300020151	Freshwater	MTPIIYMVQTMVWIAHNDRKRAEQISKQVTRVGEANGLKYIVIENKED
Ga0211736_108909441	3300020151	Freshwater	MTPIIYMVQTMVWIAHNDRKRADNISKQVTRFGEANGLKYIVIENKED
Ga0211734_102018871	3300020159	Freshwater	TPIIYMVQTMVWIAHNDRKRAEQISKQVTRVGEANGLKYIVIENKED
Ga0211734_104231504	3300020159	Freshwater	MVQTMVWIAHNDRKRADNISKQVTRFGEANGLKYIVIENKE
Ga0211733_102564803	3300020160	Freshwater	MTPIIYMVQTMLWIAHNDRKRAEQISKQVTRVGEANGLKYIVIENKED
Ga0211733_105083541	3300020160	Freshwater	LVKELKLGYLMTYLKTISMTRIIYMVQTMVWIAHNDRKRADEISKQVTRFGEVNGLKYIVIEN
Ga0211726_101129256	3300020161	Freshwater	MVQTMVWIAHNDRKRADTISKQVTRFGEVNGLKYIVIENKED
Ga0211729_114887604	3300020172	Freshwater	MTRIIYMVQTMVWIAHNDRKRADEISKQVTRFGEVNGLKYIVIEN
Ga0208234_10242421	3300020515	Freshwater	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKED
Ga0208232_10011638	3300020527	Freshwater	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKED
Ga0208232_10265323	3300020527	Freshwater	MAPIIYMVQTMLWIAHNDRKQADSISKKMTRVGEANGLKYIVIEN
Ga0208599_10139691	3300020554	Freshwater	VWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKED
Ga0208082_10345921	3300020563	Freshwater	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEANGLKYIVIENKED
Ga0208485_10304975	3300020573	Freshwater	MVQTMVWIAHNDRKRADSISKKVTRFGEANGLKYIVIEN
Ga0214163_10136304	3300021141	Freshwater	MVQTMVWIAHNDRKRADSISRQITRVSESNGLKYIVIEN
Ga0214163_10756971	3300021141	Freshwater	LVKELKLVYLMTYLKTISMTPIIYMVQTMLWIAHNDRKRAEQISKQVTRTGEANGLRYIVIEN
Ga0222713_100947584	3300021962	Estuarine Water	MAKIIYMAQTIIWIAHNDSKRAEEISKQVKRVGETNGIRYLVIE
Ga0222713_102286214	3300021962	Estuarine Water	MTQTLLWIAHNDSQRAEQISKQVTRVGEANGLKYIVIENKED
Ga0222712_100896925	3300021963	Estuarine Water	MTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEANGLKYIVIENKED
Ga0222712_103412522	3300021963	Estuarine Water	MTPIIYMVQTMLWIAHNDSKRAEQISKQVTRVGEANGIRYIVIES
Ga0222712_104570782	3300021963	Estuarine Water	MAKIIYMAQTIIWIAHNDSKRAEEISKQVTRVSETNGIRYLVIENKDETNE
Ga0222712_106670022	3300021963	Estuarine Water	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKED
Ga0214923_1000461314	3300023179	Freshwater	MAPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEVNGLKYIVIENKED
Ga0244775_106986263	3300024346	Estuarine	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRVGEANGLKYIVIENKED
Ga0244776_100572242	3300024348	Estuarine	MTPIIYMVQTMVWIAHNDRKRADEISKQVTRFGEVNGLKYIVIEN
Ga0207957_100038417	3300025372	Freshwater	MAPIVYMVQTMLWIAHKDMNRADEISKKVSRVEEVNGLKYIVIEN
Ga0255166_10524392	3300026473	Freshwater	MAPIIYMTQTLLWIAHNDRKRADEISKQVTRIGEAGGLRYVVIENKNEANG
Ga0255074_100048118	3300027121	Freshwater	MAPIIYMIQTMVWIAHNDRKIADNISKKMTRVGEANGLKYIVIEN
Ga0208923_10627391	3300027320	Estuarine	MAPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEA
Ga0208966_10490442	3300027586	Freshwater Lentic	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGESNGLKYIVIEN
Ga0255118_10187415	3300027593	Freshwater	MVQTMVWIAHNDRKRADTISKQVTRFGEANGLKYIVI
Ga0255088_10063354	3300027597	Freshwater	MIQTMVWIAHNDRKIADNISKKMTRVGEANGLKYIVIEN
Ga0208974_100177417	3300027608	Freshwater Lentic	MTPIIYMVQTMLWIAHNDKKRADTISKQVTRFGEVNGLKYIVIEN
Ga0208960_10530392	3300027649	Freshwater Lentic	MTPIIYMVQTMVWIAHNDRKRADSISKKVTRFGEANGLKYIVIEN
Ga0209599_100247603	3300027710	Deep Subsurface	MTPIIYMAQTMLWIAHNDSKRVEQISKQVTRVGEANGIRYIVIES
Ga0209599_100305885	3300027710	Deep Subsurface	MAPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEANGLKYIVIENKED
Ga0209297_10606581	3300027733	Freshwater Lake	MTPIIYMIQTMLWIAHNDRKRADTISKQVTRFGEANGLKYIVIEN
Ga0209087_10792414	3300027734	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKE
Ga0209597_11383264	3300027746	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEVNGLKYIVIENKED
Ga0209596_100713418	3300027754	Freshwater Lake	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEANGLKYIVIEN
Ga0209400_10089886	3300027963	Freshwater Lake	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEVNGLKYIVIENKED
Ga0209401_11720731	3300027971	Freshwater Lake	DYLMTYLKTISMTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEVNGLKYIVIENKED
Ga0315909_101582021	3300031857	Freshwater	MAPIIYMTQTLLWIAHNDRQRAEQISKQVTRVGEANGLRYVVIENKNQTNDIKKS
Ga0334992_0299280_615_752	3300033992	Freshwater	IIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKED
Ga0334992_0514242_383_514	3300033992	Freshwater	MAPIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIE
Ga0334996_0000114_34817_34954	3300033994	Freshwater	MAPIIYMVQTMVWIAHNDRKRADEITKKVTRFGEANGLKYIVIEK
Ga0334996_0239517_1_144	3300033994	Freshwater	MAPIIYMVQTMVWIAHNDRKRADNISKQVTRFGEANGLKYIVIENKED
Ga0334979_0065433_2208_2321	3300033996	Freshwater	MAPIIYMVQTMLWIAHNDRKRADSISKQITRIGEANGL
Ga0334985_0125649_1_105	3300034018	Freshwater	MTAIIYMVQTMLWIAHNDRKRAEQISKQVTRTGEA
Ga0334995_0442327_304_441	3300034062	Freshwater	MTAIIYMVQTMLWIAHNDRKRAEQISKQVTRTGEANGIRYIVIEN
Ga0335020_0055367_1695_1814	3300034082	Freshwater	MVQTMLWIAHNDKKRADTISKQVTRFGEANGLKYIVIET
Ga0335020_0409154_523_651	3300034082	Freshwater	MVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKED
Ga0335022_0599790_142_279	3300034095	Freshwater	MTAIIYMVQTMLWIAHNDRKRAEQISKQVTRTGEANGLRYIVIEN
Ga0335029_0465715_2_115	3300034102	Freshwater	VWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKED
Ga0335029_0481806_7_168	3300034102	Freshwater	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEVNGLKYVVIEN
Ga0335035_0063315_451_588	3300034105	Freshwater	MTPIIYMVQTMLWIAHNDKKRADTISKQVTRFGEANGLKYIVIET
Ga0335055_0310936_4_204	3300034110	Freshwater	LVKELKLDYLMTYLKTISMTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKED
Ga0335060_0551103_447_587	3300034122	Freshwater	PIIYMVQTMLWIAHNDRKRADSISKKVTRFGEANGLKYIVIENKED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055733

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences