Metagenome / Metatranscriptome Family F055706

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F055706
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	70 residues
Representative Sequence	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVAG
Number of Associated Samples	111
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.14 %
% of genes near scaffold ends (potentially truncated)	42.03 %
% of genes from short scaffolds (< 2000 bps)	86.23 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (97.826 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (10.145 % of family members)
Environment Ontology (ENVO)	Unclassified (51.449 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.391 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 21.13% Coil/Unstructured: 78.87%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00528	BPD_transp_1	28.26
PF00571	CBS	21.74
PF00231	ATP-synt	0.72
PF05221	AdoHcyase	0.72
PF00005	ABC_tran	0.72
PF00753	Lactamase_B	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0224	FoF1-type ATP synthase, gamma subunit	Energy production and conversion [C]	0.72
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.83 %
Unclassified	root	N/A	2.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.83 %
Unclassified	root	N/A	2.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.83 %
Unclassified	root	N/A	2.17 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	39.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	33.33 %
Unclassified	root	N/A	2.17 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.86 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	32.61 %
Unclassified	root	N/A	2.17 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.72 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.61 %
Unclassified	root	N/A	2.17 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.61 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	26.09 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.17 %
Unclassified	root	N/A	2.17 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.45 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.72 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.61 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.09 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.17 %
Unclassified	root	N/A	2.17 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.45 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.72 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.61 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.09 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.17 %
Unclassified	root	N/A	2.17 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.45 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.72 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.61 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.09 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.17 %
Unclassified	root	N/A	2.17 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.72 %
Nakamurella lactea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella lactea	0.72 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.61 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.09 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.17 %
Unclassified	root	N/A	2.17 %
Streptomyces sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp.	0.72 %
Nakamurella lactea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella lactea	0.72 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0948362	Not Available	518	Open in IMG/M
2228664021\|ICCgaii200_c0948701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300000890\|JGI11643J12802_11779531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1152	Open in IMG/M
3300004157\|Ga0062590_100673181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	926	Open in IMG/M
3300004157\|Ga0062590_102470263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300004480\|Ga0062592_100098432	All Organisms → cellular organisms → Bacteria	1803	Open in IMG/M
3300004803\|Ga0058862_12655258	Not Available	532	Open in IMG/M
3300005093\|Ga0062594_102106037	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300005329\|Ga0070683_100216173	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300005329\|Ga0070683_101072900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	773	Open in IMG/M
3300005335\|Ga0070666_10816020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300005336\|Ga0070680_100257901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1475	Open in IMG/M
3300005336\|Ga0070680_100712414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	864	Open in IMG/M
3300005338\|Ga0068868_100261909	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300005338\|Ga0068868_100262957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella lactea	1456	Open in IMG/M
3300005340\|Ga0070689_101778227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300005341\|Ga0070691_10023737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2849	Open in IMG/M
3300005344\|Ga0070661_100033838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3704	Open in IMG/M
3300005344\|Ga0070661_100630923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	868	Open in IMG/M
3300005354\|Ga0070675_100322583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1365	Open in IMG/M
3300005354\|Ga0070675_101487693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300005355\|Ga0070671_100353299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1255	Open in IMG/M
3300005356\|Ga0070674_100460508	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300005364\|Ga0070673_100198579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1727	Open in IMG/M
3300005364\|Ga0070673_100346994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1317	Open in IMG/M
3300005367\|Ga0070667_101066840	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005441\|Ga0070700_100042746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2784	Open in IMG/M
3300005441\|Ga0070700_100135410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1667	Open in IMG/M
3300005455\|Ga0070663_100249067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1405	Open in IMG/M
3300005457\|Ga0070662_101708134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300005466\|Ga0070685_10452656	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300005466\|Ga0070685_10710781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300005530\|Ga0070679_100169423	All Organisms → cellular organisms → Bacteria	2156	Open in IMG/M
3300005530\|Ga0070679_101006378	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300005535\|Ga0070684_100320656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1423	Open in IMG/M
3300005546\|Ga0070696_101258169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	627	Open in IMG/M
3300005563\|Ga0068855_100514263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1300	Open in IMG/M
3300005564\|Ga0070664_101165291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300005564\|Ga0070664_101193458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300005577\|Ga0068857_101171572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	743	Open in IMG/M
3300005578\|Ga0068854_100519152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300005615\|Ga0070702_100124349	All Organisms → cellular organisms → Bacteria	1619	Open in IMG/M
3300005616\|Ga0068852_101949047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300005843\|Ga0068860_101430670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	713	Open in IMG/M
3300006579\|Ga0074054_11253725	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300006881\|Ga0068865_102099952	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300006904\|Ga0075424_100739869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1050	Open in IMG/M
3300009098\|Ga0105245_13189956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300009100\|Ga0075418_11111944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	856	Open in IMG/M
3300009148\|Ga0105243_10187809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1802	Open in IMG/M
3300009148\|Ga0105243_10665022	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1011	Open in IMG/M
3300009148\|Ga0105243_12592702	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300009174\|Ga0105241_11024535	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300009177\|Ga0105248_11002715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	943	Open in IMG/M
3300009868\|Ga0130016_10001178	All Organisms → cellular organisms → Bacteria	98680	Open in IMG/M
3300009870\|Ga0131092_10086351	All Organisms → cellular organisms → Bacteria	5037	Open in IMG/M
3300009873\|Ga0131077_10164249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2451	Open in IMG/M
3300010375\|Ga0105239_10730881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1133	Open in IMG/M
3300010375\|Ga0105239_13425369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300010399\|Ga0134127_10207891	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300010400\|Ga0134122_11022251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300010401\|Ga0134121_11654616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300012895\|Ga0157309_10013225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp.	1699	Open in IMG/M
3300012901\|Ga0157288_10047804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300012943\|Ga0164241_10033250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3893	Open in IMG/M
3300012943\|Ga0164241_10039329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3527	Open in IMG/M
3300012943\|Ga0164241_10711739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	729	Open in IMG/M
3300012985\|Ga0164308_10202451	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300012985\|Ga0164308_11622529	Not Available	598	Open in IMG/M
3300012989\|Ga0164305_10038146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2706	Open in IMG/M
3300013102\|Ga0157371_10054594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2837	Open in IMG/M
3300013104\|Ga0157370_10627087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	983	Open in IMG/M
3300013307\|Ga0157372_13442158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300014326\|Ga0157380_10959162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300014969\|Ga0157376_10452161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1253	Open in IMG/M
3300014969\|Ga0157376_13095261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300015371\|Ga0132258_11487326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1710	Open in IMG/M
3300017792\|Ga0163161_10929500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300019356\|Ga0173481_10098350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1120	Open in IMG/M
3300019361\|Ga0173482_10016052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2039	Open in IMG/M
3300020070\|Ga0206356_10136840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2507	Open in IMG/M
3300020077\|Ga0206351_10300877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	744	Open in IMG/M
3300020082\|Ga0206353_10601346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300022467\|Ga0224712_10263265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	799	Open in IMG/M
3300022880\|Ga0247792_1025009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1017	Open in IMG/M
3300022898\|Ga0247745_1042138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300022899\|Ga0247795_1067317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300023266\|Ga0247789_1068671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	674	Open in IMG/M
3300024055\|Ga0247794_10292699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300025321\|Ga0207656_10074042	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300025899\|Ga0207642_10571465	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300025904\|Ga0207647_10121373	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300025907\|Ga0207645_10033387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3308	Open in IMG/M
3300025908\|Ga0207643_10466991	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300025909\|Ga0207705_10689677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	794	Open in IMG/M
3300025911\|Ga0207654_10636321	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300025912\|Ga0207707_10489689	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300025919\|Ga0207657_10493910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	959	Open in IMG/M
3300025920\|Ga0207649_10453193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	969	Open in IMG/M
3300025920\|Ga0207649_10935904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300025923\|Ga0207681_11295333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300025926\|Ga0207659_10190862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1630	Open in IMG/M
3300025927\|Ga0207687_10096847	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300025927\|Ga0207687_10204246	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300025930\|Ga0207701_10383692	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300025932\|Ga0207690_10175690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1608	Open in IMG/M
3300025932\|Ga0207690_10650784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863	Open in IMG/M
3300025933\|Ga0207706_10150037	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300025937\|Ga0207669_10077719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2112	Open in IMG/M
3300025938\|Ga0207704_10115751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1823	Open in IMG/M
3300025938\|Ga0207704_10315831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1203	Open in IMG/M
3300025944\|Ga0207661_10284734	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300025944\|Ga0207661_10752227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	897	Open in IMG/M
3300025944\|Ga0207661_11934958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300025981\|Ga0207640_10267676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1335	Open in IMG/M
3300026067\|Ga0207678_10040907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4019	Open in IMG/M
3300026089\|Ga0207648_11552416	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300026142\|Ga0207698_11241943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	759	Open in IMG/M
3300026943\|Ga0207486_1018973	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300027475\|Ga0207607_103699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300027876\|Ga0209974_10322529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300027907\|Ga0207428_10103008	All Organisms → cellular organisms → Bacteria	2204	Open in IMG/M
3300028380\|Ga0268265_12089989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300028381\|Ga0268264_11219388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	762	Open in IMG/M
3300028589\|Ga0247818_10427918	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300028589\|Ga0247818_10484808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300028596\|Ga0247821_10706821	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300031562\|Ga0310886_10397642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	812	Open in IMG/M
3300031847\|Ga0310907_10085244	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300031901\|Ga0307406_11346323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300031908\|Ga0310900_10128676	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300031940\|Ga0310901_10407047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300031996\|Ga0308176_12515884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300032012\|Ga0310902_10150738	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300032013\|Ga0310906_11453264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300032075\|Ga0310890_10552706	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300032075\|Ga0310890_10688293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	800	Open in IMG/M
3300032122\|Ga0310895_10059550	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.72%
Environmental	Environmental	47.10%
Engineered	Engineered	2.17%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.00%
Terrestrial	Environmental → Terrestrial	47.10%
Wastewater	Engineered → Wastewater	2.17%
Human	Host-Associated → Human	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.06%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.94%
Activated Sludge	Engineered → Wastewater → Activated Sludge	2.17%
Digestive System	Host-Associated → Human → Digestive System	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.22%
Loam	Environmental → Terrestrial → Soil → Loam	13.77%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	2.17%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.04%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.90%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	2.17%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	10.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.25%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.17%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.45%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026943	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-10 (SPAdes)	Environmental	Open in IMG/M
3300027475	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06.2A5a-11 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_09483622	2228664021	Soil	VRQTPMQNESLPDWMRPXGXMLSVCPEXGCXXLTMGGTXVEHDPPXTVXFXRGRPYVAEXAADAVRVPIVG
ICCgaii200_09487012	2228664021	Soil	VRQTPMQNESLPDWMRPRGTMLSVCPEPGCTTLTMGGTCVEHDPPVTVTFTRGRPYVAEVAAETVRVSVAG
JGI11643J12802_117795313	3300000890	Soil	VRQTPMQNESLPDWMRPQGSMLSVCPETGCARLTMGGTCVEHDPPATVAFVRGRPYVAE
Ga0062590_1006731811	3300004157	Soil	VRQTPMQNESLPDWMRPRGTMLSVCPEPGCRTLTMGGTCVEHDPPVTVTFTRGRPYVAEPAGETVRVPVAG*
Ga0062590_1024702632	3300004157	Soil	VRQTPMQNESLPDWMRPQGSMLSVCPETGCARLTMGGTCVEHDPPATVAFVRGRPYVAEAAADAVRVPIVG*
Ga0062592_1000984323	3300004480	Soil	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0058862_126552582	3300004803	Host-Associated	MQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0062594_1021060371	3300005093	Soil	RQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVAG*
Ga0070683_1002161732	3300005329	Corn Rhizosphere	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVAG*
Ga0070683_1010729001	3300005329	Corn Rhizosphere	GGAAVRQTPMQNESLPDWMRSRGTMLSVCPEPGCRTLTMGGTCVEHDPPVTVTFTRGRPYVAEPAGEAVRVPVAG*
Ga0070666_108160202	3300005335	Switchgrass Rhizosphere	VRQTPMQNEPLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAA
Ga0070680_1002579013	3300005336	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0070680_1007124142	3300005336	Corn Rhizosphere	SVIIHPEVATVRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0068868_1002619093	3300005338	Miscanthus Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0068868_1002629571	3300005338	Miscanthus Rhizosphere	PDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0070689_1017782272	3300005340	Switchgrass Rhizosphere	MRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0070691_100237372	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VRQTPMQSESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0070661_1000338382	3300005344	Corn Rhizosphere	VRQTPMQNEPLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0070661_1006309233	3300005344	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTQPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0070675_1003225833	3300005354	Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTESGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0070675_1014876931	3300005354	Miscanthus Rhizosphere	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVA*
Ga0070671_1003532991	3300005355	Switchgrass Rhizosphere	SESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0070674_1004605082	3300005356	Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPQGSLLSVCTEPGCPTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0070673_1001985793	3300005364	Switchgrass Rhizosphere	VRQTPMQNEALPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0070673_1003469943	3300005364	Switchgrass Rhizosphere	VRQTPMPNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0070667_1010668402	3300005367	Switchgrass Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTQPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRV
Ga0070700_1000427464	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0070700_1001354102	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPAETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0070663_1002490674	3300005455	Corn Rhizosphere	VRQTPVQNESLPDWMRPQGSMLSVCTESGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0070662_1017081342	3300005457	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSLLSVCTEPGCPTLTMGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPVAG*
Ga0070685_104526561	3300005466	Switchgrass Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCPTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVG*
Ga0070685_107107812	3300005466	Switchgrass Rhizosphere	VRQTPMPNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTSAADAVRVPVVG*
Ga0070679_1001694233	3300005530	Corn Rhizosphere	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPVAG*
Ga0070679_1010063781	3300005530	Corn Rhizosphere	VRQTPMQNESLPDWMRPHGSMLSVCTESGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0070684_1003206563	3300005535	Corn Rhizosphere	MQNESLPDWMRPRGTMLSVCPEPGCTTLTMGGTCVEHDPPVTVTFTRGRPYVAEVAAETVRVSVAG*
Ga0070696_1012581691	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	SLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0068855_1005142631	3300005563	Corn Rhizosphere	LPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0070664_1011652912	3300005564	Corn Rhizosphere	VRQTPMQNESLPDWMRPRGTMLSVCPEPGCRTLTMGGTCVEHDPPVTVTFTRGRPYVAEPAGEAVRVPVAG*
Ga0070664_1011934581	3300005564	Corn Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCTEPGCTMLTMGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPVAG*
Ga0068857_1011715723	3300005577	Corn Rhizosphere	RQTPMQNESLPDWMRPRGSMLSVCPEPGCRTLTMGGTCVEHDPPVTVTFTRGRPYVAEPAGEAVRVPVAG*
Ga0068854_1005191522	3300005578	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVAG*
Ga0070702_1001243492	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCPTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0068852_1019490471	3300005616	Corn Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCTEPGCTMLTMGGTCVEHDPPVTVTFARSRPYVANAAADAVRVPVAG*
Ga0068860_1014306702	3300005843	Switchgrass Rhizosphere	QTGNRSVIIHPEVATVRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0074054_112537251	3300006579	Soil	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADVVRVRV
Ga0068865_1020999522	3300006881	Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVSFARGRPYVTTAAADAVRVPVV
Ga0075424_1007398692	3300006904	Populus Rhizosphere	VRQTPMQNESLPDWMRQRGPMLSVCPEPGCTTVTMGGTCVEHDPPATVAFVRGRPYVAEAAVDALRIPVAG*
Ga0105245_131899561	3300009098	Miscanthus Rhizosphere	MQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVAG*
Ga0075418_111119441	3300009100	Populus Rhizosphere	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTTGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPVAG*
Ga0105243_101878092	3300009148	Miscanthus Rhizosphere	MQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAAEAVRIPVAG*
Ga0105243_106650221	3300009148	Miscanthus Rhizosphere	MQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVAG*
Ga0105243_125927021	3300009148	Miscanthus Rhizosphere	TPMPNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTSAADAVRVPVVG*
Ga0105241_110245351	3300009174	Corn Rhizosphere	MQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPVAG*
Ga0105248_110027151	3300009177	Switchgrass Rhizosphere	REFAPGRRRVVGLSSSSPGGADVRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0130016_1000117853	3300009868	Wastewater	MPSGEVLVESLRPPGPMLSVCPVEGCTTLTMGGTCVEHDLPVTVTFERGRPFVATTPASVDRAPVAS*
Ga0131092_100863517	3300009870	Activated Sludge	VPQTLITNETLPDWLRPHGSLLSVCPVPGCTTLTMGGTCVAHDPPVTATFTRGRPFVAKTPAHAGRVSVLR*
Ga0131077_101642492	3300009873	Wastewater	MRQMPVQNELLPTWSQPRGSMLSVCPIPGCTTLTLGGTCVAHDLPVTATFERGRPFVAKAPADDVRAPVPG*
Ga0105239_107308812	3300010375	Corn Rhizosphere	LPDWMRAQGSMLSVCTEPGCTTLTTGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPVAG*
Ga0105239_134253692	3300010375	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTA
Ga0134127_102078911	3300010399	Terrestrial Soil	MQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVA*
Ga0134122_110222512	3300010400	Terrestrial Soil	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0134121_116546161	3300010401	Terrestrial Soil	MQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0157309_100132251	3300012895	Soil	GNRSVIIHPEVATVRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0157288_100478041	3300012901	Soil	MQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRVPIVG*
Ga0164241_100332509	3300012943	Soil	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVEHDPPATVAFVRGRPYVAEAAADAVRVPVAG*
Ga0164241_100393295	3300012943	Soil	MQYESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVAHDPPATVTFVRGRPYFAEAAVDTVRVPVAG*
Ga0164241_107117392	3300012943	Soil	GGAAVRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVAHDPPATVTFVRGRPYVAETALDAVRLPVAG*
Ga0164308_102024511	3300012985	Soil	IPPGGADVRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADVVRVRVAS*
Ga0164308_116225292	3300012985	Soil	MIPSGGAALRQTQIQNDLLPDWMRPRGSMLSVCPEPGCTTLTMGGTCVAHDPPVKATFTRGRPFVSETAAHDVRAPV*
Ga0164305_100381464	3300012989	Soil	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADVVRVRVAS*
Ga0157371_100545943	3300013102	Corn Rhizosphere	MQNEALPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0157370_106270872	3300013104	Corn Rhizosphere	QTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG*
Ga0157372_134421581	3300013307	Corn Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVAG*
Ga0157380_109591622	3300014326	Switchgrass Rhizosphere	MQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAV
Ga0157376_104521611	3300014969	Miscanthus Rhizosphere	NESLPDWMRPQGSMLSVCTEPGCPTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG*
Ga0157376_130952611	3300014969	Miscanthus Rhizosphere	DWMRPKGSMLSVCPEPGCSTLTMGGTCVEHDPPATVTFTRGRPYVANATTDAVRVPVAG*
Ga0132258_114873265	3300015371	Arabidopsis Rhizosphere	VRQSPMQNESLPDWMRPHGSMLSVCPVPGCTALTMGGTCVEHDPPVTVTYVRGRPYVAEAAADPALVRVPG*
Ga0163161_109295002	3300017792	Switchgrass Rhizosphere	VRQTPMQNEPLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0173481_100983501	3300019356	Soil	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPAETVAFVRGRPYVAEAAADAVRIPVAG
Ga0173482_100160522	3300019361	Soil	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0206356_101368402	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAAEAVRIPVAG
Ga0206351_103008772	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	VATVRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0206353_106013462	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	PEVAAVRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0224712_102632652	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	ATVRQTPMQNEPLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0247792_10250092	3300022880	Soil	VRQTPMQSESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0247745_10421381	3300022898	Soil	VRQTPMQNESLPDWMRPQGSMLSVCPETGCARLTMGGTCVEHDPPATVAFVRGRPYVAEAAADAVRVPIVG
Ga0247795_10673172	3300022899	Soil	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIP
Ga0247789_10686712	3300023266	Soil	TREVAAVRQTPMQNESLPDWMRPQGSMLSVCPETGCARLTMGGTCVEHDPPATVAFVRGRPYVAEAAADAVRIPVAG
Ga0247794_102926991	3300024055	Soil	PLRRRVTGLSSSTREVAAVRQTPMQNESLPDWMRPQGSMLSVCPETGCARLTMGGTCVEHDPPATVAFVRGRPYVAEAAADAVRVPIVG
Ga0207656_100740423	3300025321	Corn Rhizosphere	VRQTPMPNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVAG
Ga0207642_105714652	3300025899	Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTESGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPV
Ga0207647_101213732	3300025904	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTESGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0207645_100333873	3300025907	Miscanthus Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCTEPGCTMLTMGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPVAG
Ga0207643_104669911	3300025908	Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDLPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0207705_106896771	3300025909	Corn Rhizosphere	PMRNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0207654_106363212	3300025911	Corn Rhizosphere	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPVAG
Ga0207707_104896892	3300025912	Corn Rhizosphere	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVAG
Ga0207657_104939102	3300025919	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0207649_104531931	3300025920	Corn Rhizosphere	PMQNESLPDWMRPRGTMLSVCPEPGCRTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0207649_109359042	3300025920	Corn Rhizosphere	APVRQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVAG
Ga0207681_112953331	3300025923	Switchgrass Rhizosphere	GGAPVRQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0207659_101908623	3300025926	Miscanthus Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCTEPGCTMLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVA
Ga0207687_100968473	3300025927	Miscanthus Rhizosphere	MQNESLPDWMRPRGTMLSVCPEPGCTTLTMGGTCVEHDPPVTVTFTRGRPYVAEVAAETVRVSVAG
Ga0207687_102042461	3300025927	Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVAG
Ga0207701_103836923	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVALAAVLEATRLQLGRLLG
Ga0207690_101756901	3300025932	Corn Rhizosphere	NESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0207690_106507842	3300025932	Corn Rhizosphere	MQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0207706_101500373	3300025933	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSLLSVCTEPGCPTLTMGGTCVEHDPPVTVTFARGRPYVTTSAADAVRVPVVG
Ga0207669_100777193	3300025937	Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTSAADAVRVPVVG
Ga0207704_101157516	3300025938	Miscanthus Rhizosphere	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEA
Ga0207704_103158311	3300025938	Miscanthus Rhizosphere	LPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVA
Ga0207661_102847341	3300025944	Corn Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVSFARGRPYVTTAAADAVRVPVVG
Ga0207661_107522272	3300025944	Corn Rhizosphere	VRQTPMQNESLPDWMRQRGPMLSVCPEPGCTTVTMGGTCVEHDPPATVAFVRGRPYVAEAAVDALRIPVAG
Ga0207661_119349581	3300025944	Corn Rhizosphere	LPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVA
Ga0207640_102676761	3300025981	Corn Rhizosphere	YVIIHPEVAIVRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0207678_100409071	3300026067	Corn Rhizosphere	VAIVRQTPMQNESLPDWIRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0207648_115524162	3300026089	Miscanthus Rhizosphere	PVRQTPMQNESLPDWMRPQGSMLSVCPEPGCSTLTMGGTCVEHDPPVTVTFTRGRPYVANATTDAVRVPVAG
Ga0207698_112419432	3300026142	Corn Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCTEPGCTMLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVAG
Ga0207486_10189732	3300026943	Soil	VRQTPMQNESLPDWMRPQGSMLSVCPETGCARLTMGGTCVEHDPPATVAFVRGRPYVAEAAADAVRIPVAG
Ga0207607_1036991	3300027475	Soil	AVRQTPMQNESLPDWMRPQGSMLSVCPETGCARLTMGGTCVEHDPPATVAFVRGRPYVAEAAADAVRVPIVG
Ga0209974_103225292	3300027876	Arabidopsis Thaliana Rhizosphere	VRQTPMQNESLPDWMRPQGSMLSVCPETGCARLTMGGTCVEHDPPATVAFVRGRPYVAEAAAERARVHDRGIAEDLALHL
Ga0207428_101030085	3300027907	Populus Rhizosphere	MRQTPMQNESLPDWMRPQGSMLSVCTEPGCTMLTMGGTCVEHDPPVTVTFARGRPYVANAAADAVRVPV
Ga0268265_120899891	3300028380	Switchgrass Rhizosphere	ESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTSAADAVRVPVVG
Ga0268264_112193881	3300028381	Switchgrass Rhizosphere	QTGNRSVIIHPEVATVRQTPMQSESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVQHDPPETVAFVRGRPYVAEAAADAVRIPVAG
Ga0247818_104279183	3300028589	Soil	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVAD
Ga0247818_104848081	3300028589	Soil	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0247821_107068212	3300028596	Soil	MRQTPMQNESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVA
Ga0310886_103976421	3300031562	Soil	MQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0310907_100852442	3300031847	Soil	VRQTPMQNESLPDWMRPQGSMLSVCTESGCSTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVAG
Ga0307406_113463232	3300031901	Rhizosphere	QTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVEHDPPATVTFVRGRPYVAEAALDGVRVPVAG
Ga0310900_101286764	3300031908	Soil	VRQTPMQNESLPDWMRPQGSLLSVCTEPGCPTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0310901_104070472	3300031940	Soil	ESLPDWMRAQGSMLSVCTEPGCTTLTMGGTCVEHDPPVTVTFARGRPYVTTVAADAVRVPVVG
Ga0308176_125158842	3300031996	Soil	VRQTPMQNESLPDWMRPHGSMLSVCPEPGCTTLTMGGTCVEHDPPATVTFVRGRPYVAEKALDAVRV
Ga0310902_101507383	3300032012	Soil	VRQTPMQNESLPDWMRPQGSMLSVCTQPGCSTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0310906_114532641	3300032013	Soil	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVMVTFARGRPYVTTAAADAVRVPVV
Ga0310890_105527062	3300032075	Soil	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCPTLTMGGTCVEHDPPVTVTFARGRPYVTTAAADAVRVPVVG
Ga0310890_106882931	3300032075	Soil	AAVRQTPMQNESLPDWMRPRGTMLSVCPEPGCTALTMGGTCVAHDPPVTVTFTRGRPYVAKAAAEMARVPVAG
Ga0310895_100595503	3300032122	Soil	VRQTPMQNESLPDWMRPQGSMLSVCTEPGCSTLTMGGTCVEHDPPVTVTFARGRPYVAKAAADAVRVPVAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055706

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences