Metagenome / Metatranscriptome Family F055583

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055583
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	51 residues
Representative Sequence	MKDQILLHVEELEERIAPGVLGGGHPAQTANPENTANPEGSAIPENHPGH
Number of Associated Samples	82
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.54 %
% of genes near scaffold ends (potentially truncated)	31.16 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.899 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (31.884 % of family members)
Environment Ontology (ENVO)	Unclassified (59.420 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.043 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.13% β-sheet: 2.56% Coil/Unstructured: 92.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF01925	TauE	1.45
PF01226	Form_Nir_trans	1.45
PF13411	MerR_1	0.72
PF13620	CarboxypepD_reg	0.72
PF07714	PK_Tyr_Ser-Thr	0.72
PF13759	2OG-FeII_Oxy_5	0.72
PF13533	Biotin_lipoyl_2	0.72
PF07977	FabA	0.72
PF13683	rve_3	0.72
PF06685	DUF1186	0.72
PF16576	HlyD_D23	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.90
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.45
COG2116	Formate/nitrite transporter FocA, FNT family	Inorganic ion transport and metabolism [P]	1.45
COG0764	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase	Lipid transport and metabolism [I]	0.72
COG4706	Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain	Lipid transport and metabolism [I]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
All Organisms	root	All Organisms	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
cellular organisms	root	All Organisms → cellular organisms	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	31.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.88 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.88 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.88 %
Pseudogulbenkiania	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania	0.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.88 %
unclassified Pseudogulbenkiania	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania → unclassified Pseudogulbenkiania	0.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.88 %
Pseudogulbenkiania sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania → unclassified Pseudogulbenkiania → Pseudogulbenkiania sp.	0.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0889591	Not Available	1007	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101480132	Not Available	1862	Open in IMG/M
3300002558\|JGI25385J37094_10016235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2665	Open in IMG/M
3300005172\|Ga0066683_10053964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2376	Open in IMG/M
3300005172\|Ga0066683_10155742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1404	Open in IMG/M
3300005172\|Ga0066683_10610134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300005174\|Ga0066680_10029857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3073	Open in IMG/M
3300005174\|Ga0066680_10234591	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1164	Open in IMG/M
3300005175\|Ga0066673_10243050	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300005175\|Ga0066673_10427324	Not Available	777	Open in IMG/M
3300005178\|Ga0066688_10714342	Not Available	635	Open in IMG/M
3300005179\|Ga0066684_10994816	Not Available	542	Open in IMG/M
3300005445\|Ga0070708_101285141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300005446\|Ga0066686_10594294	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300005451\|Ga0066681_10608650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300005451\|Ga0066681_10705003	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300005540\|Ga0066697_10154093	Not Available	1358	Open in IMG/M
3300005555\|Ga0066692_10390881	Not Available	882	Open in IMG/M
3300005586\|Ga0066691_10095958	All Organisms → cellular organisms → Bacteria	1659	Open in IMG/M
3300006796\|Ga0066665_11245238	Not Available	569	Open in IMG/M
3300006796\|Ga0066665_11588029	Not Available	514	Open in IMG/M
3300006797\|Ga0066659_10553697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania → unclassified Pseudogulbenkiania → Pseudogulbenkiania sp.	929	Open in IMG/M
3300009012\|Ga0066710_100179285	All Organisms → cellular organisms → Bacteria	2990	Open in IMG/M
3300009012\|Ga0066710_101085966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1237	Open in IMG/M
3300009012\|Ga0066710_101431934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1070	Open in IMG/M
3300009012\|Ga0066710_101759833	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	939	Open in IMG/M
3300009012\|Ga0066710_102552460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
3300009012\|Ga0066710_102986191	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300009012\|Ga0066710_104582811	Not Available	516	Open in IMG/M
3300009090\|Ga0099827_11848708	Not Available	526	Open in IMG/M
3300009137\|Ga0066709_103871740	Not Available	544	Open in IMG/M
3300009137\|Ga0066709_103939744	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300010061\|Ga0127462_113528	Not Available	504	Open in IMG/M
3300010061\|Ga0127462_163511	Not Available	618	Open in IMG/M
3300010069\|Ga0127467_109383	Not Available	692	Open in IMG/M
3300010069\|Ga0127467_134299	Not Available	884	Open in IMG/M
3300010078\|Ga0127487_158545	Not Available	582	Open in IMG/M
3300010085\|Ga0127445_1055937	Not Available	536	Open in IMG/M
3300010091\|Ga0127485_1059160	Not Available	511	Open in IMG/M
3300010093\|Ga0127490_1073673	Not Available	608	Open in IMG/M
3300010093\|Ga0127490_1089573	Not Available	646	Open in IMG/M
3300010117\|Ga0127449_1054411	Not Available	517	Open in IMG/M
3300010122\|Ga0127488_1072048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1307	Open in IMG/M
3300010124\|Ga0127498_1160539	Not Available	511	Open in IMG/M
3300010126\|Ga0127482_1061106	Not Available	647	Open in IMG/M
3300010126\|Ga0127482_1082234	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300010126\|Ga0127482_1123431	Not Available	1064	Open in IMG/M
3300010133\|Ga0127459_1064830	Not Available	963	Open in IMG/M
3300010140\|Ga0127456_1062374	Not Available	572	Open in IMG/M
3300010141\|Ga0127499_1107758	Not Available	613	Open in IMG/M
3300010142\|Ga0127483_1046825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1392	Open in IMG/M
3300010142\|Ga0127483_1108946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1675	Open in IMG/M
3300010142\|Ga0127483_1188318	Not Available	660	Open in IMG/M
3300010142\|Ga0127483_1216551	Not Available	1225	Open in IMG/M
3300010303\|Ga0134082_10529823	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300010321\|Ga0134067_10395475	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300010323\|Ga0134086_10376288	Not Available	566	Open in IMG/M
3300010325\|Ga0134064_10469996	Not Available	516	Open in IMG/M
3300010329\|Ga0134111_10041531	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300010329\|Ga0134111_10305236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300010333\|Ga0134080_10165962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	942	Open in IMG/M
3300012198\|Ga0137364_10357541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1090	Open in IMG/M
3300012199\|Ga0137383_10269515	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1247	Open in IMG/M
3300012201\|Ga0137365_10063309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2792	Open in IMG/M
3300012201\|Ga0137365_10503367	Not Available	890	Open in IMG/M
3300012201\|Ga0137365_11190376	Not Available	545	Open in IMG/M
3300012204\|Ga0137374_10137695	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2208	Open in IMG/M
3300012204\|Ga0137374_10214490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1645	Open in IMG/M
3300012204\|Ga0137374_10435052	Not Available	1034	Open in IMG/M
3300012204\|Ga0137374_10522450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	918	Open in IMG/M
3300012204\|Ga0137374_11277337	Not Available	508	Open in IMG/M
3300012206\|Ga0137380_10205729	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300012206\|Ga0137380_10579340	Not Available	983	Open in IMG/M
3300012206\|Ga0137380_11128127	Not Available	667	Open in IMG/M
3300012207\|Ga0137381_10007294	All Organisms → cellular organisms → Bacteria → Proteobacteria	8277	Open in IMG/M
3300012207\|Ga0137381_10372752	All Organisms → cellular organisms → Bacteria → PVC group	1244	Open in IMG/M
3300012207\|Ga0137381_11101655	Not Available	683	Open in IMG/M
3300012210\|Ga0137378_11535179	Not Available	576	Open in IMG/M
3300012210\|Ga0137378_11587984	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300012350\|Ga0137372_10014071	All Organisms → cellular organisms → Bacteria → Proteobacteria	7617	Open in IMG/M
3300012350\|Ga0137372_10225829	Not Available	1484	Open in IMG/M
3300012350\|Ga0137372_10373598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1086	Open in IMG/M
3300012350\|Ga0137372_10377423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1079	Open in IMG/M
3300012350\|Ga0137372_10636533	Not Available	779	Open in IMG/M
3300012353\|Ga0137367_10096596	All Organisms → cellular organisms → Bacteria	2179	Open in IMG/M
3300012353\|Ga0137367_10128954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1853	Open in IMG/M
3300012353\|Ga0137367_10199273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1451	Open in IMG/M
3300012353\|Ga0137367_10600208	Not Available	771	Open in IMG/M
3300012353\|Ga0137367_10885115	Not Available	616	Open in IMG/M
3300012353\|Ga0137367_11101559	Not Available	536	Open in IMG/M
3300012354\|Ga0137366_10496401	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300012354\|Ga0137366_10555500	Not Available	826	Open in IMG/M
3300012354\|Ga0137366_10661302	Not Available	747	Open in IMG/M
3300012355\|Ga0137369_10714690	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300012355\|Ga0137369_10848201	Not Available	619	Open in IMG/M
3300012356\|Ga0137371_10307711	Not Available	1234	Open in IMG/M
3300012356\|Ga0137371_10955176	Not Available	651	Open in IMG/M
3300012357\|Ga0137384_11531621	Not Available	516	Open in IMG/M
3300012359\|Ga0137385_11049548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300012360\|Ga0137375_10822936	Not Available	745	Open in IMG/M
3300012371\|Ga0134022_1005300	Not Available	634	Open in IMG/M
3300012372\|Ga0134037_1194624	Not Available	753	Open in IMG/M
3300012376\|Ga0134032_1238971	Not Available	725	Open in IMG/M
3300012380\|Ga0134047_1040072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300012380\|Ga0134047_1251803	Not Available	643	Open in IMG/M
3300012380\|Ga0134047_1262250	Not Available	865	Open in IMG/M
3300012392\|Ga0134043_1147358	Not Available	536	Open in IMG/M
3300012392\|Ga0134043_1294924	Not Available	830	Open in IMG/M
3300012393\|Ga0134052_1055142	Not Available	1002	Open in IMG/M
3300012396\|Ga0134057_1058611	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300012403\|Ga0134049_1407362	Not Available	538	Open in IMG/M
3300012406\|Ga0134053_1002633	Not Available	1061	Open in IMG/M
3300012532\|Ga0137373_10531562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300012532\|Ga0137373_10920290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300012972\|Ga0134077_10073560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1292	Open in IMG/M
3300012977\|Ga0134087_10501585	Not Available	611	Open in IMG/M
3300015264\|Ga0137403_11154022	Not Available	621	Open in IMG/M
3300017659\|Ga0134083_10394478	Not Available	603	Open in IMG/M
3300018431\|Ga0066655_10030083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2636	Open in IMG/M
3300018431\|Ga0066655_10366803	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	947	Open in IMG/M
3300018433\|Ga0066667_11463546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300018433\|Ga0066667_11611465	Not Available	578	Open in IMG/M
3300018468\|Ga0066662_10919399	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300018482\|Ga0066669_10055462	All Organisms → cellular organisms → Bacteria	2532	Open in IMG/M
3300018482\|Ga0066669_10470536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300019233\|Ga0184645_1209872	Not Available	920	Open in IMG/M
3300019233\|Ga0184645_1219996	Not Available	656	Open in IMG/M
3300019249\|Ga0184648_1268732	Not Available	554	Open in IMG/M
3300019259\|Ga0184646_1212761	Not Available	634	Open in IMG/M
3300020070\|Ga0206356_10662300	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300026307\|Ga0209469_1122511	Not Available	630	Open in IMG/M
3300026316\|Ga0209155_1072257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1302	Open in IMG/M
3300026327\|Ga0209266_1054674	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1943	Open in IMG/M
3300026537\|Ga0209157_1212527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300026537\|Ga0209157_1358699	Not Available	525	Open in IMG/M
3300026538\|Ga0209056_10097453	All Organisms → cellular organisms → Bacteria	2412	Open in IMG/M
3300031114\|Ga0308187_10179508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300031114\|Ga0308187_10238712	Not Available	655	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.10%
Aquatic	Environmental → Aquatic	2.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.10%
Freshwater	Environmental → Aquatic → Freshwater	2.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.20%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.90%
Loam	Environmental → Terrestrial → Soil → Loam	2.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	65.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	28.99%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.72%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	31.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	31.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.32%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010061	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010069	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010078	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010085	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010091	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010093	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010117	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010122	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010124	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010126	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012371	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012403	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_08895912	2228664022	Soil	MKNIFELEVEELEERIAPDVLGGGHPAQTANPEGTANPEHSAVPEGPNTAGKP
INPhiseqgaiiFebDRAFT_1014801322	3300000364	Soil	MKNIFELEVEELEERIAPDVLGGGHPAQTANPEGTANPEHSAVPEGPNTAGKP*
JGI25385J37094_100162353	3300002558	Grasslands Soil	MKDQIPLHVEELEERIAPGVLGGGHPAQTANPEHTANPEGSAIPENHPGH*
Ga0066683_100539643	3300005172	Soil	MKDQILLHVEELEERIAPGVLGGGHPAHTANPENTANPEGSAIPENHPGH*
Ga0066683_101557422	3300005172	Soil	VEELEERIAPGVLGGGHPAQTANPENTANPEGSAIPENHPGH*
Ga0066683_106101342	3300005172	Soil	MKDQEQVLLEVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAVPEGGHHHHPH*
Ga0066680_100298571	3300005174	Soil	MRNRILLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPEGSAVPEGPNTAGNHHH*
Ga0066680_102345913	3300005174	Soil	MKDQIPLHVEELEERIAPGVLGGGHAAQTANPENTANPEGSAIPENHPGH*
Ga0066673_102430502	3300005175	Soil	MLLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPEGSAVPEGPNTAGHH*
Ga0066673_104273241	3300005175	Soil	MNEDVRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGGQHHHH*
Ga0066688_107143421	3300005178	Soil	MKEDVRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGGQHHHH*
Ga0066684_109948161	3300005179	Soil	NLLEVQELEERIAPSVLGGGHPAQTANPESTANPEGSAVPENKAGRH*
Ga0070708_1012851412	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	KVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAIPENKAGHH*
Ga0066686_105942941	3300005446	Soil	MKEDVRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGPNTAGR*
Ga0066681_106086502	3300005451	Soil	MENEIRLNVEELEQRIAPSPSPVLTNSSQTANPEGTANPEGSAVPEGGHHHH*
Ga0066681_107050032	3300005451	Soil	MNEDVRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGGQHHHHATEATG*
Ga0066697_101540935	3300005540	Soil	MNEHVRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGGQHHHH*
Ga0066692_103908813	3300005555	Soil	MKDQIQLNVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGGQHHHH*
Ga0066691_100959583	3300005586	Soil	MKDQILLHVEELEARIAPGVLGGGHPAQTANPEHTANPEGSAIPENHPGH*
Ga0066665_112452381	3300006796	Soil	VGTISLKIEELEERIAPSVLGGGHPAHTANPENTANPEGSAVPENKAGK*
Ga0066665_115880292	3300006796	Soil	MKDTIRLQVEELEERIAPSVLGGGHPAQSANPENTANPEGSAIPENRAGKH*
Ga0066659_105536972	3300006797	Soil	MENEIRLNVEQLEQRIAPIPSPVLTNSSQTANPEGTANPEGSAVPEGGHHHH*
Ga0066710_1001792854	3300009012	Grasslands Soil	VGTISLKIEELEERIAPSVLGGGHPAHTANPENTANPEGSAVPENKAGK
Ga0066710_1010859664	3300009012	Grasslands Soil	MADTVRLQVEELEQRIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENQSGKH
Ga0066710_1014319341	3300009012	Grasslands Soil	MKANPMVELQVEDLEERIAPSVLGGGHPAQTANPEGTANPEGSAVPEGPNRAGKP
Ga0066710_1017598331	3300009012	Grasslands Soil	LCRGGKRHTMRNQMLLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPEGSAVPEGPNTAGHH
Ga0066710_1025524601	3300009012	Grasslands Soil	MKDQEQVLLEVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAVPEGGHHHHPH
Ga0066710_1029861912	3300009012	Grasslands Soil	MENEIRLNVEELEQRIAPSPSPVLTNSSHTANPEGTANPEGSAVPEGGHHH
Ga0066710_1045828112	3300009012	Grasslands Soil	MENEIRLNVEELEQRIAPSPSPVLTNSSQTANPEGTANPEGSAVPEGGHHHH
Ga0099827_118487081	3300009090	Vadose Zone Soil	MKTLELEIEPLEERIAPGVLGGGNPAQTANPEGTANPEGSAIPENHPGH*
Ga0066709_1038717402	3300009137	Grasslands Soil	MKSQQLEIEPLEERIAPDVLGGGNPAQTANPEHTANPEGSAIPENHPGH*
Ga0066709_1039397441	3300009137	Grasslands Soil	RNQMLLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPEGSAVPEGPNTAGHH*
Ga0127462_1135281	3300010061	Grasslands Soil	MSDQIQLSVEELEERIAPEVLGGGKPAQSANPENTANPEGSAVPEGGHHHH
Ga0127462_1635111	3300010061	Grasslands Soil	TNLVKKGGESEMKSQQLEIEPLEERIAPDVLGGGNPAQTANPEHTANPEGSAIPENHPGH
Ga0127467_1093833	3300010069	Grasslands Soil	MKDQIQLNVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGG
Ga0127467_1342994	3300010069	Grasslands Soil	MNEDVRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGG
Ga0127487_1585451	3300010078	Grasslands Soil	MEDTVRLQVEELEQRIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENQSGKH*
Ga0127445_10559373	3300010085	Grasslands Soil	MKDEALLNLEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEG
Ga0127485_10591601	3300010091	Grasslands Soil	VKDTIRLQVEELEERIAPSVLGGGHPAQSANPENTANPEGSAVPENHAGKH*
Ga0127490_10736731	3300010093	Grasslands Soil	MKDQILLHVEELEERIAPGVLGGGHPAHTANPENTANPEGS
Ga0127490_10895732	3300010093	Grasslands Soil	MADTVRLQVEELEQRIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENQSGKH*
Ga0127449_10544112	3300010117	Grasslands Soil	MKDTVRLQVEELEQRIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENQSGKH*
Ga0127488_10720481	3300010122	Grasslands Soil	MKDQILLHVEELEERIAPGVLGGGHPAHTANPENT
Ga0127498_11605392	3300010124	Grasslands Soil	MKDSVRLQIEELEERIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENQAGNH*
Ga0127482_10611061	3300010126	Grasslands Soil	MKDQILLTVEELEQRIAPDVLGGGNPAQTANPEGTANPEGSAVPK
Ga0127482_10822341	3300010126	Grasslands Soil	MKDLILLNVEELEERIAPDVLGGGNPAQTANPEGTANPEGSA
Ga0127482_11234313	3300010126	Grasslands Soil	GGESEMKSQQLEIEPLEERIAPDVLGGGNPAQTANPEHTANPEGSAIPENHPGH*
Ga0127459_10648301	3300010133	Grasslands Soil	MNNQVQLEVEELEPRIAPSVLGGGNPAQTANPEHTANPEGSAIPENHPGH*
Ga0127456_10623742	3300010140	Grasslands Soil	MKDSVRLQIEELEERIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENQAGKH*
Ga0127499_11077582	3300010141	Grasslands Soil	MENEIRLNVEELEQRIAPSPSPVLTNSSQTANPEGTANPEGSAV
Ga0127483_10468254	3300010142	Grasslands Soil	MKDQILLHVEELEERIAPGVLGGGHPAQTANPENTANPEGSAIPENHPGH*
Ga0127483_11089465	3300010142	Grasslands Soil	MRNRILLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPERSAVPEGPNTAGH*
Ga0127483_11883182	3300010142	Grasslands Soil	MADTVRLQVEELEQRIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPQNQSGKH*
Ga0127483_12165511	3300010142	Grasslands Soil	MENEIRLNVEELEQRIAPSPSPVLTNSSQTANPEGTANPEGSAVPEGPNTAGHHH*
Ga0134082_105298232	3300010303	Grasslands Soil	EELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGGQHHHH*
Ga0134067_103954751	3300010321	Grasslands Soil	MENEIRLNVKELEQRIAPSPSPVLTNSSQTANPEGTANPEGSAVPEGGHHHH*
Ga0134086_103762881	3300010323	Grasslands Soil	TMKDQIPLHVEELEERIAPGVLGGGHAAQTANPENTANPEGSAIPENHPGH*
Ga0134064_104699961	3300010325	Grasslands Soil	RIAPGVLGGGHAAQTANPENTANPEGSAIPENHPGH*
Ga0134111_100415311	3300010329	Grasslands Soil	MENEILLNVEELEQRIAPSPSPVLTNSSHTANPEGTANPEGSAVPEGGHHHH*
Ga0134111_103052362	3300010329	Grasslands Soil	MKDQEQVLLEVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAVPEGGH
Ga0134080_101659621	3300010333	Grasslands Soil	MENEIRLNVEELEQRIAPSPSPVLTNSSHTANPEGTANPEGSAVPEGGHHH*
Ga0137364_103575415	3300012198	Vadose Zone Soil	MKDQIPLHVEELEERIAPGVLGGGHPAQTANPEHTANPEGSAIRENHV
Ga0137383_102695152	3300012199	Vadose Zone Soil	MKTEIILTVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGGQHHHH*
Ga0137365_100633095	3300012201	Vadose Zone Soil	VEELEERIAPGVLGGGHAAQTANPENTANPEGSAIPENHPGH*
Ga0137365_105033673	3300012201	Vadose Zone Soil	LNAEELEDRIAQSVLGGGNPAHTANPEGTANPEGSAVPENKAGHH*
Ga0137365_111903762	3300012201	Vadose Zone Soil	MKDQILPNVEELEERIAPSVLGGGKPAQSANPENTANPEGSAIPENKAGN*
Ga0137374_101376951	3300012204	Vadose Zone Soil	MKERLTFEVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAVPEGPNTAGNHHHH*
Ga0137374_102144901	3300012204	Vadose Zone Soil	MKDRILLDVEELEDRIAPSVLGGGHPAQTANPEGTANPEGSAVPEGPNTAGKH*
Ga0137374_104350522	3300012204	Vadose Zone Soil	MKDQILNVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAIPENKAGN*
Ga0137374_105224501	3300012204	Vadose Zone Soil	MKDQIILNAEELEERIAPSVLGGGHPAQTANPENTANPEGSAIPENKAGN*
Ga0137374_112773372	3300012204	Vadose Zone Soil	MKDELKELKVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGGQHHHH*
Ga0137380_102057292	3300012206	Vadose Zone Soil	MKDQILLNVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGSHHHH*
Ga0137380_105793402	3300012206	Vadose Zone Soil	MKSQRLEIEPLEERTAPDVLGGGNPAQTANPEHTANPEGSAIPENHPGH*
Ga0137380_111281271	3300012206	Vadose Zone Soil	MENEIRLNVEELEQRIAPSPSPVLTNGSHTANPEGTANPEGSAVP
Ga0137381_100072941	3300012207	Vadose Zone Soil	MKDQILLHVEELEERIAPGVLGGGHAAQTANPENTANPEGSAIPENHPGH*
Ga0137381_103727522	3300012207	Vadose Zone Soil	MKDLLELEVEELEERIAPDVLGGGHPARTANPEGTANPEGSAVPEGPNTAGKP*
Ga0137381_111016552	3300012207	Vadose Zone Soil	MKDQILLHVEELEERFAPGVLGGGHPAQTANPEHTANPEGSAIPENHPGH*
Ga0137378_115351791	3300012210	Vadose Zone Soil	MRNGILLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPEGSAVPEGPNTAGH*
Ga0137378_115879841	3300012210	Vadose Zone Soil	MENEIRLNVEELEQRIAPSPSPVLTNSSHTANPEGTANPEGSAVPEGPNTAGHH*
Ga0137372_100140713	3300012350	Vadose Zone Soil	MKDRILLDVEELEDRIAPSVLGGGHPAQTANPEGTANPEGSAVP*
Ga0137372_102258292	3300012350	Vadose Zone Soil	MMLNVEELEERIAPDVLGSGNPAQTANPENTANPEGSAVPEGGHHHH*
Ga0137372_103735982	3300012350	Vadose Zone Soil	MKEPILLDVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAIPENKAGH*
Ga0137372_103774231	3300012350	Vadose Zone Soil	VKNLVLTIEELEPRIAPGVLGGGHPAQTANPENTANPEGSAIPEGPAGNRGH*
Ga0137372_106365331	3300012350	Vadose Zone Soil	MKDPLPFEVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAVPEGPNTAGNHHN*
Ga0137367_100965962	3300012353	Vadose Zone Soil	MKDQILLNVEELEERIAPDVLGGGHPAQTANPEGTANPEGSAVPEGPNTAGH*
Ga0137367_101289542	3300012353	Vadose Zone Soil	MEDTVRLQVEELEQRIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENQAGH*
Ga0137367_101992736	3300012353	Vadose Zone Soil	MKEQILLNVEELEERIAPDVLGGGHPAQTANPEGTANP
Ga0137367_106002081	3300012353	Vadose Zone Soil	MKDVTRFEVEELEERIAPGVLGGGHPAQTANPEGTANPEGSAVPEGPNTAGKPGH*
Ga0137367_108851152	3300012353	Vadose Zone Soil	ELEERIAPSVLGGGHPAQTANPEGTANPEGSTVPEGPNTAGNHHH*
Ga0137367_111015592	3300012353	Vadose Zone Soil	MKDQIQLNVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVP
Ga0137366_104964012	3300012354	Vadose Zone Soil	MKHQIQLNVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGGQHHHH*
Ga0137366_105555002	3300012354	Vadose Zone Soil	MKDQILLNVEELEERIAPSVLGGGNPAKTANPENTANPEGSAIPENKAGH*
Ga0137366_106613022	3300012354	Vadose Zone Soil	MEDTVRLQVEELEQRIAPSLLGHGHPAQSANPENTANPEGSANPEGSAVPENQAGH*
Ga0137369_107146901	3300012355	Vadose Zone Soil	KKPMKDQILLNVEELEERIAPSVLGGGNPAKTANPENTANPEGSAIPENKAGN*
Ga0137369_108482011	3300012355	Vadose Zone Soil	MMKDQELIMLEVEELEQRIAPDVLGDGNPAQTANPEGTANPEGSAVPEGGRHHHH*
Ga0137371_103077111	3300012356	Vadose Zone Soil	MKDQIQLNVEELEERIAPEVLGGGKPAQSANPENTANPEGSAVPEGGHHHHL*
Ga0137371_109551762	3300012356	Vadose Zone Soil	MKDQILPNVEELEERIAPSVLGGGNPAKTANPENTANPEGSAIPENKAGH*
Ga0137384_115316211	3300012357	Vadose Zone Soil	MKDPLPFEVEELEERIAPSVLGGGHPAQTANPEGTANPEGSAVPEGPNTAGNHHH*
Ga0137385_110495482	3300012359	Vadose Zone Soil	MRNRILLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPEGSAVPEGPNTAGH*
Ga0137375_108229361	3300012360	Vadose Zone Soil	MMKDQELIMLEVEELEQRIAPDVLGGGNPAQTANPEGTANPEGSAVPEGGRHHHH*
Ga0134022_10053003	3300012371	Grasslands Soil	MKDQIQLNVEELEERIAPEVLGGGKPAQSANPENTANPEGSAVPEGGHH
Ga0134037_11946241	3300012372	Grasslands Soil	MKSQRLEIEPLEERIAPDVLGGGNPAQTANPEHTANPEGSAIPENHPGH*
Ga0134032_12389712	3300012376	Grasslands Soil	MKDQVLLNVEELEERIAPDVLGGGKPAQSANPENTANPEGSAVPEGGHHHH
Ga0134047_10400721	3300012380	Grasslands Soil	MKDQILLNVEELEQRIAPDVLGGGNPAQTANPEGTANPEG
Ga0134047_12518033	3300012380	Grasslands Soil	MKDQIQLNVEELEERIAPEVLGGGKPAQSANPENTANPEGSAVPEGGHHH
Ga0134047_12622502	3300012380	Grasslands Soil	VEELEERIAPGVLGGGHPAHTANPENTANPEGSAIPENHPGH*
Ga0134043_11473582	3300012392	Grasslands Soil	MKDQVLLNIEELEERIAPDVLGGGNPAQTANPENTANPEG
Ga0134043_12949244	3300012392	Grasslands Soil	VKDQILLNVEELEERIAPDVLGGGNPAQTANPENTANPEGSAV
Ga0134052_10551421	3300012393	Grasslands Soil	MNEHDRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGGQHHHH*
Ga0134057_10586111	3300012396	Grasslands Soil	SEMKSQRLEIEPLEERIAPDVLGGGNPAQTANPEHTANPEGSAIPENHPGH*
Ga0134049_14073621	3300012403	Grasslands Soil	MKDQILLHVEELEERIAPGVLGGGHPGSAIPENHPGH*
Ga0134053_10026333	3300012406	Grasslands Soil	ESEMKSQRLEIEPLEERIAPDVLGGGNPAQTANPEHTANPEGSAIPENHPGH*
Ga0137373_105315621	3300012532	Vadose Zone Soil	MKEQILLNVEELEERIAPDVLGGGHPAQTANPEGTANPEGSAVPEG
Ga0137373_109202902	3300012532	Vadose Zone Soil	KTELLLNVEELEERIAPDVLSGGNPAQTANPEGTASPEGSAVPEGGRHHHP*
Ga0134077_100735601	3300012972	Grasslands Soil	VEELEERIAPGVLGGGHPAQTANPEHTANPEGSAIPENHPGH*
Ga0134087_105015852	3300012977	Grasslands Soil	MKDQIPLHVGELEERIAPGVLGGGHPAQTANPENTANPEGSAIPENHPGH*
Ga0137403_111540221	3300015264	Vadose Zone Soil	MKHEILPKVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGGQ
Ga0134083_103944782	3300017659	Grasslands Soil	MKDQIPLHVEELEERIASGVLGGGHPAQTANPENTANPEGSAIPENHPGH
Ga0066655_100300835	3300018431	Grasslands Soil	VEELEERIAPGVLGGGHPAQTANPENTANPEGSAIPENHPGH
Ga0066655_103668031	3300018431	Grasslands Soil	MKDQIPLHVEELEERIAPGVLGGGHPAQTANPEHTANPEGSAIPENHPGH
Ga0066667_114635462	3300018433	Grasslands Soil	TTMKDQIPLHVEELEERIAPGVLGGGHPAQTANPEHTANPEGSAIPENHPGH
Ga0066667_116114651	3300018433	Grasslands Soil	MKEDVRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGGQHHHH
Ga0066662_109193992	3300018468	Grasslands Soil	MKDQIPLHVEELEERIAPGVLGGGHAAQTANPENTANPEGSAIPENHPGH
Ga0066669_100554626	3300018482	Grasslands Soil	MNEDVRLEVEELEERIAPDSTSVLTNSSHTANPEGTANPEGSAVPEGGQHHHH
Ga0066669_104705364	3300018482	Grasslands Soil	MENEIRLNVEELEQRIAPSPSPVLTNSSQTANPEGTANPEGSAVPEGPNTAGHHH
Ga0184645_12098723	3300019233	Groundwater Sediment	MKDTVRLQVEELEERIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENKAGKHH
Ga0184645_12199961	3300019233	Groundwater Sediment	MKDSVRLQIEELEERIAPSVLGHGHPAHSANPENTANPEGSANPEGSAVPENQAGKH
Ga0184648_12687322	3300019249	Groundwater Sediment	MNEFPIPLRVDELEERIAPSVLGGGHPAQSANPEGSANPEGSAVPENRAGHH
Ga0184646_12127613	3300019259	Groundwater Sediment	MKDSVRLQIEELEERIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPEN
Ga0206356_106623006	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MKAKVSEQVLLQIEELEERVAPDVLGGGNPAQTANPEGTANPEGSAIPENKAGH
Ga0209469_11225111	3300026307	Soil	MKDQILLHVEELEERIAPGVLGGGHPAQTANPEHTANPEGSAIRENHVQDLG
Ga0209155_10722572	3300026316	Soil	MLLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPEGSAVPEGPNTAGHH
Ga0209266_10546743	3300026327	Soil	MKDQILLHVEELEERIAPGVLGGGHPAHTANPENTANPEGSAIPENHPGH
Ga0209157_12125272	3300026537	Soil	MRNRILLHVEELEQRIAPGSSPVLTNSAKTANPEGTANPEGSAVPEGPNTAGNHHH
Ga0209157_13586991	3300026537	Soil	MKDQIPLHVEELEERIAPGVLGGGHAAQTANPENTANPEGSAIPENHPG
Ga0209056_100974536	3300026538	Soil	MKDQIQLNVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGGQHHHH
Ga0308187_101795082	3300031114	Soil	VDKQQIERSNMKTEMLLNVEELEERIAPDVLGGGNPAQTANPEGTANPEGSAVPEGGRHHHP
Ga0308187_102387122	3300031114	Soil	MKDTVRLQVEELEERIAPSVLGHGHPAQSANPENTANPEGSANPEGSAVPENQAGKH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055583

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences