Metagenome Family F055511

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055511
Family Type	Metagenome
Number of Sequences	138
Average Sequence Length	53 residues
Representative Sequence	MTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA
Number of Associated Samples	116
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	24.64 %
% of genes near scaffold ends (potentially truncated)	35.51 %
% of genes from short scaffolds (< 2000 bps)	87.68 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.304 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.145 % of family members)
Environment Ontology (ENVO)	Unclassified (39.130 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.406 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.75% β-sheet: 0.00% Coil/Unstructured: 56.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF02627	CMD	27.54
PF13343	SBP_bac_6	19.57
PF01547	SBP_bac_1	8.70
PF00378	ECH_1	7.25
PF04879	Molybdop_Fe4S4	2.90
PF00528	BPD_transp_1	2.90
PF13561	adh_short_C2	2.17
PF01661	Macro	2.17
PF02515	CoA_transf_3	0.72
PF07690	MFS_1	0.72
PF07883	Cupin_2	0.72
PF02738	MoCoBD_1	0.72
PF00296	Bac_luciferase	0.72
PF00239	Resolvase	0.72
PF00005	ABC_tran	0.72
PF01656	CbiA	0.72
PF00696	AA_kinase	0.72
PF00196	GerE	0.72
PF13191	AAA_16	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	27.54
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	27.54
COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	Translation, ribosomal structure and biogenesis [J]	2.17
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.72
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.72
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.72
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.65 %
Unclassified	root	N/A	4.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.65 %
Unclassified	root	N/A	4.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.30 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.35 %
Unclassified	root	N/A	4.35 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.81 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	23.91 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	4.35 %
Unclassified	root	N/A	4.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.90 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.64 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	23.91 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	4.35 %
Unclassified	root	N/A	4.35 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.90 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	23.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	19.57 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	4.35 %
Unclassified	root	N/A	4.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.90 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	23.19 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	18.84 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	4.35 %
Unclassified	root	N/A	4.35 %
Parvibaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae	1.45 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.72 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.19 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	5.80 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	4.35 %
Unclassified	root	N/A	4.35 %
Candidatus Phaeomarinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Candidatus Phaeomarinobacter	1.45 %
Enhydrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter	0.72 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.19 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	5.80 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	4.35 %
Unclassified	root	N/A	4.35 %
Candidatus Phaeomarinobacter ectocarpi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Candidatus Phaeomarinobacter → Candidatus Phaeomarinobacter ectocarpi	1.45 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.72 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.19 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	5.80 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	4.35 %
Unclassified	root	N/A	4.35 %
Candidatus Phaeomarinobacter ectocarpi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Candidatus Phaeomarinobacter → Candidatus Phaeomarinobacter ectocarpi	1.45 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.72 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105291022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1018	Open in IMG/M
3300000890\|JGI11643J12802_12185717	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300003994\|Ga0055435_10097466	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300003995\|Ga0055438_10016843	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300003995\|Ga0055438_10233947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	566	Open in IMG/M
3300004156\|Ga0062589_100146121	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300004156\|Ga0062589_101229712	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	719	Open in IMG/M
3300004281\|Ga0066397_10079280	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300004463\|Ga0063356_100891259	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300004480\|Ga0062592_100505327	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300005093\|Ga0062594_100202198	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300005093\|Ga0062594_100535101	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300005093\|Ga0062594_100706533	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300005213\|Ga0068998_10162450	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005294\|Ga0065705_10417545	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300005295\|Ga0065707_10465483	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005295\|Ga0065707_10746089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	620	Open in IMG/M
3300005328\|Ga0070676_10186907	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300005334\|Ga0068869_101556274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	588	Open in IMG/M
3300005336\|Ga0070680_100681887	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300005338\|Ga0068868_102320502	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005340\|Ga0070689_102235628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	501	Open in IMG/M
3300005353\|Ga0070669_101094925	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005438\|Ga0070701_10561073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	751	Open in IMG/M
3300005441\|Ga0070700_101199474	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	634	Open in IMG/M
3300005444\|Ga0070694_101268297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	619	Open in IMG/M
3300005445\|Ga0070708_101006055	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	782	Open in IMG/M
3300005468\|Ga0070707_100497588	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300005526\|Ga0073909_10479217	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	599	Open in IMG/M
3300005546\|Ga0070696_100403789	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300005549\|Ga0070704_100185755	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300005617\|Ga0068859_101450351	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005618\|Ga0068864_101710370	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005713\|Ga0066905_100077462	All Organisms → cellular organisms → Bacteria	2169	Open in IMG/M
3300005718\|Ga0068866_10161846	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300005718\|Ga0068866_10609479	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005844\|Ga0068862_100306937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1461	Open in IMG/M
3300005844\|Ga0068862_101214233	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300006041\|Ga0075023_100434253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	576	Open in IMG/M
3300006846\|Ga0075430_100499410	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300006876\|Ga0079217_11345468	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300007004\|Ga0079218_11117504	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300007004\|Ga0079218_11957201	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	667	Open in IMG/M
3300009038\|Ga0099829_10005128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7934	Open in IMG/M
3300009087\|Ga0105107_10545966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	807	Open in IMG/M
3300009092\|Ga0105250_10413263	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	600	Open in IMG/M
3300009143\|Ga0099792_10728857	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	644	Open in IMG/M
3300009148\|Ga0105243_10611512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1051	Open in IMG/M
3300009148\|Ga0105243_11732870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	654	Open in IMG/M
3300009153\|Ga0105094_10479729	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	723	Open in IMG/M
3300009176\|Ga0105242_10660517	Not Available	1018	Open in IMG/M
3300009553\|Ga0105249_10172750	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2097	Open in IMG/M
3300009553\|Ga0105249_10577634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1177	Open in IMG/M
3300010373\|Ga0134128_12440534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	576	Open in IMG/M
3300010391\|Ga0136847_10780905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	593	Open in IMG/M
3300010391\|Ga0136847_11234160	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300010391\|Ga0136847_13188962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	585	Open in IMG/M
3300010396\|Ga0134126_13087096	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300010397\|Ga0134124_11045703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	830	Open in IMG/M
3300010400\|Ga0134122_10704014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	950	Open in IMG/M
3300010400\|Ga0134122_12245466	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	590	Open in IMG/M
3300011414\|Ga0137442_1059772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	784	Open in IMG/M
3300012189\|Ga0137388_11981241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	511	Open in IMG/M
3300012199\|Ga0137383_11062625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	588	Open in IMG/M
3300012353\|Ga0137367_10010172	All Organisms → cellular organisms → Bacteria → Proteobacteria	7514	Open in IMG/M
3300012906\|Ga0157295_10256856	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	589	Open in IMG/M
3300012929\|Ga0137404_11258697	Not Available	681	Open in IMG/M
3300012930\|Ga0137407_10267083	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300012931\|Ga0153915_11483809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Candidatus Phaeomarinobacter → Candidatus Phaeomarinobacter ectocarpi	793	Open in IMG/M
3300012931\|Ga0153915_11508371	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	786	Open in IMG/M
3300012944\|Ga0137410_10572610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	930	Open in IMG/M
3300012944\|Ga0137410_10619984	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300012957\|Ga0164303_10615866	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300012986\|Ga0164304_11306917	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300013297\|Ga0157378_11956285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	636	Open in IMG/M
3300014885\|Ga0180063_1011898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2326	Open in IMG/M
3300017927\|Ga0187824_10015821	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
3300017936\|Ga0187821_10197473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	773	Open in IMG/M
3300017993\|Ga0187823_10060808	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1059	Open in IMG/M
3300017997\|Ga0184610_1071927	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1058	Open in IMG/M
3300018052\|Ga0184638_1058694	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1405	Open in IMG/M
3300018075\|Ga0184632_10017879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2987	Open in IMG/M
3300018076\|Ga0184609_10185059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Candidatus Phaeomarinobacter → Candidatus Phaeomarinobacter ectocarpi	968	Open in IMG/M
3300018082\|Ga0184639_10023557	All Organisms → cellular organisms → Bacteria	3093	Open in IMG/M
3300018422\|Ga0190265_10345481	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300018422\|Ga0190265_10711810	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300018429\|Ga0190272_10697052	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	913	Open in IMG/M
3300019362\|Ga0173479_10638610	Not Available	564	Open in IMG/M
3300019879\|Ga0193723_1005814	All Organisms → cellular organisms → Bacteria	4159	Open in IMG/M
3300019883\|Ga0193725_1021044	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1783	Open in IMG/M
3300020004\|Ga0193755_1004846	All Organisms → cellular organisms → Bacteria	4322	Open in IMG/M
3300021073\|Ga0210378_10015325	All Organisms → cellular organisms → Bacteria → Proteobacteria	3149	Open in IMG/M
3300021080\|Ga0210382_10077067	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1359	Open in IMG/M
3300021344\|Ga0193719_10079962	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1420	Open in IMG/M
3300022756\|Ga0222622_10077448	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300025165\|Ga0209108_10134713	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1311	Open in IMG/M
3300025312\|Ga0209321_10357882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	697	Open in IMG/M
3300025521\|Ga0210083_1047788	Not Available	647	Open in IMG/M
3300025535\|Ga0207423_1009728	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1479	Open in IMG/M
3300025551\|Ga0210131_1065238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	606	Open in IMG/M
3300025558\|Ga0210139_1044735	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	889	Open in IMG/M
3300025560\|Ga0210108_1025855	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1080	Open in IMG/M
3300025580\|Ga0210138_1002983	All Organisms → cellular organisms → Bacteria	3061	Open in IMG/M
3300025917\|Ga0207660_10880749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	731	Open in IMG/M
3300025934\|Ga0207686_10606868	Not Available	862	Open in IMG/M
3300025961\|Ga0207712_10060999	All Organisms → cellular organisms → Bacteria	2675	Open in IMG/M
3300025961\|Ga0207712_10124082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1958	Open in IMG/M
3300025979\|Ga0210078_1056980	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300026035\|Ga0207703_11641032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300026089\|Ga0207648_10050416	All Organisms → cellular organisms → Bacteria	3640	Open in IMG/M
3300026888\|Ga0209900_1021253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	524	Open in IMG/M
3300027818\|Ga0209706_10209652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	943	Open in IMG/M
3300027909\|Ga0209382_11481974	Not Available	677	Open in IMG/M
3300028380\|Ga0268265_10323327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	1398	Open in IMG/M
3300028380\|Ga0268265_10568648	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300028381\|Ga0268264_12428337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	530	Open in IMG/M
3300028590\|Ga0247823_11532387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300028592\|Ga0247822_10841868	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	750	Open in IMG/M
3300028711\|Ga0307293_10033868	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300028812\|Ga0247825_11011922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	604	Open in IMG/M
3300028814\|Ga0307302_10442571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	644	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1012366	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1721	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1019261	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1087911	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300031548\|Ga0307408_100612490	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	969	Open in IMG/M
3300031548\|Ga0307408_100687702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	918	Open in IMG/M
3300031720\|Ga0307469_10421038	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1147	Open in IMG/M
3300031720\|Ga0307469_11764305	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300031740\|Ga0307468_100054772	All Organisms → cellular organisms → Bacteria	2111	Open in IMG/M
3300031740\|Ga0307468_100366257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1083	Open in IMG/M
3300031834\|Ga0315290_11479162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	553	Open in IMG/M
3300032770\|Ga0335085_10001596	All Organisms → cellular organisms → Bacteria → Proteobacteria	46800	Open in IMG/M
3300033407\|Ga0214472_10021828	All Organisms → cellular organisms → Bacteria	6620	Open in IMG/M
3300033475\|Ga0310811_11213933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	618	Open in IMG/M
3300033513\|Ga0316628_103160761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	600	Open in IMG/M
3300034074\|Ga0373894_034862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	735	Open in IMG/M
3300034165\|Ga0364942_0053267	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300034257\|Ga0370495_0238773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	592	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.54%
Host-Associated	Host-Associated	21.74%
Engineered	Engineered	0.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.90%
Aquatic	Environmental → Aquatic	24.64%
Plants	Host-Associated → Plants	21.74%
Bioremediation	Engineered → Bioremediation	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.59%
Freshwater	Environmental → Aquatic → Freshwater	10.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.14%
Marine	Environmental → Aquatic → Marine	7.97%
Sediment	Environmental → Aquatic → Sediment	6.52%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%
Metal	Engineered → Bioremediation → Metal	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.14%
Loam	Environmental → Terrestrial → Soil → Loam	8.70%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.52%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.62%
Lake	Environmental → Aquatic → Freshwater → Lake	2.90%
Sand	Environmental → Terrestrial → Soil → Sand	2.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.45%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.25%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.90%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.17%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.45%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.14%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.35%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.62%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	2.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.17%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.17%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.17%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.45%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.45%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.45%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.45%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.72%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.72%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025312	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4	Environmental	Open in IMG/M
3300025521	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025551	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025558	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025560	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025979	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026888	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034074	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.1	Engineered	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1052910222	3300000364	Soil	MAAMRERFDDAELVELGLITAAFVMLGRLHRAFGVARMGPKSHAVLEDGAGTAAGKDT*
JGI11643J12802_121857171	3300000890	Soil	TSMDDAFMAGMRERFTDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHAVLREG*
Ga0055435_100974661	3300003994	Natural And Restored Wetlands	MSEMRAHFTDAELVELGLITGAFIVLGRLHRTFGVAPMGPRSHAVLERGYDP*
Ga0055438_100168433	3300003995	Natural And Restored Wetlands	MSEMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP*
Ga0055438_102339472	3300003995	Natural And Restored Wetlands	MTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMSPRSHAVLERGYSS*
Ga0062589_1001461213	3300004156	Soil	VHFADDELVELGLLTGAFVMLGRLHRTFGVAPMTEASHAVLRPDGA*
Ga0062589_1012297121	3300004156	Soil	FTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS*
Ga0066397_100792801	3300004281	Tropical Forest Soil	TAIDDAFMIDMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPCSYAVLEGGYGP*
Ga0063356_1008912591	3300004463	Arabidopsis Thaliana Rhizosphere	MARLRECFTDAEVVELGLITGAFIMLGRLHRTFGVTPMGPNSHRVLAGE*
Ga0062592_1005053271	3300004480	Soil	AHAAIDDGFMASLRVHFADDELVELGLLTGAFVMLGRLHRTFGVAPMTEASHAVLRPDGA
Ga0062594_1002021981	3300005093	Soil	MAGMRERFTDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHA
Ga0062594_1005351011	3300005093	Soil	DHTSMDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREG*
Ga0062594_1007065332	3300005093	Soil	DGFMASLRTHFAEDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGP*
Ga0068998_101624501	3300005213	Natural And Restored Wetlands	TTIDDAFMSEMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP*
Ga0065705_104175452	3300005294	Switchgrass Rhizosphere	DDAFMTGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRGHAVLERGYDA*
Ga0065707_104654832	3300005295	Switchgrass Rhizosphere	VNHTTIDDAFMTGMRALFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS*
Ga0065707_107460892	3300005295	Switchgrass Rhizosphere	MDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREGRA
Ga0070676_101869073	3300005328	Miscanthus Rhizosphere	MAGLRAHFADDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGA*
Ga0068869_1015562742	3300005334	Miscanthus Rhizosphere	MAGMRERFTDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHAVLREG*
Ga0070680_1006818872	3300005336	Corn Rhizosphere	MAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREGRAE*
Ga0068868_1023205022	3300005338	Miscanthus Rhizosphere	DGFMASLRAHFADDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGA*
Ga0070689_1022356282	3300005340	Switchgrass Rhizosphere	MRTRFDDAELVELGLITGAFVMLGRLHRAFGVAPTGPQSHAVLADGAASGKDT*
Ga0070669_1010949252	3300005353	Switchgrass Rhizosphere	MTIMRTRFDDAELVELGLITGAFVMLGRLHRAFGVAPTGPQSHAVLADGAASGKDT*
Ga0070701_105610731	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREG
Ga0070700_1011994741	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MAGMRERFSDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHAVLREG*
Ga0070694_1012682973	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTALRAHFADDELVELGLVTGAFVMLGRLHRTFGVAPMTEASHAVLRPEGA*
Ga0070708_1010060551	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	FMAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREG*
Ga0070707_1004975882	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	GMRERFTDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHAVLREG*
Ga0073909_104792171	3300005526	Surface Soil	RFSDPELVELGLITAAFVMLGRLHKAFDVAPMGPNSHAVLREG*
Ga0070696_1004037893	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VNHTTIDDAFMAGMRALFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS*
Ga0070704_1001857552	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRGHAVLERGYDA*
Ga0068859_1014503512	3300005617	Switchgrass Rhizosphere	LATEHTSIDDAFMTIMRTRFDDAELVELGLITGAFVMLGRLHRAFGVAPTGPQSHAVLADGAASGKDT*
Ga0068864_1017103701	3300005618	Switchgrass Rhizosphere	AFMSGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA*
Ga0066905_1000774622	3300005713	Tropical Forest Soil	MIDMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPCSYAVLEGGYGP*
Ga0068866_101618463	3300005718	Miscanthus Rhizosphere	IDDGFMASLRAHFAEDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGP*
Ga0068866_106094792	3300005718	Miscanthus Rhizosphere	MAGMRERFSDPELVELGLITAAFVMLGRLHKAFGVAPMGPNSHAVLRER*
Ga0068862_1003069371	3300005844	Switchgrass Rhizosphere	FTDAELVELGLITGAFIMLGRLHRTFGVAPMSPRSHAVLERGYDS*
Ga0068862_1012142332	3300005844	Switchgrass Rhizosphere	MTIMRTRFDDAELVELGLITGAFVMLGRLHRAFGVAPMGPRSHAVLADGSGAASGKDT*
Ga0075023_1004342532	3300006041	Watersheds	VNHTTIDDAFMTGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLE
Ga0075430_1004994103	3300006846	Populus Rhizosphere	LRRHLSDGEIVELGLVTAAFVMLGRLHRAFGIAEMPAASHAVLDGRS*
Ga0079217_113454682	3300006876	Agricultural Soil	MARLRQVFSDAEVVELGLITAAFIMLGRLHRAFGVVPMGPHSHRVLAEG*
Ga0079218_111175042	3300007004	Agricultural Soil	MAQLRQVFSDPEVVELGLITAAFIMLGRLHRAFGVVPMGPHSHRVLAEG*
Ga0079218_119572012	3300007004	Agricultural Soil	DDVFIERMRRTLTDAELVELGLITGAFIVLGRLHRAFGVAPMGPRSHAVLAGTMPLPDTPDRKR*
Ga0099829_100051285	3300009038	Vadose Zone Soil	MTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAILERGYNS*
Ga0105107_105459662	3300009087	Freshwater Sediment	MIRMRTLFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA*
Ga0105250_104132631	3300009092	Switchgrass Rhizosphere	DDAFMAGMRALFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA*
Ga0099792_107288571	3300009143	Vadose Zone Soil	FMTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAILERGYNS*
Ga0105243_106115122	3300009148	Miscanthus Rhizosphere	MDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHAVLREG*
Ga0105243_117328702	3300009148	Miscanthus Rhizosphere	MTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS*
Ga0105094_104797292	3300009153	Freshwater Sediment	DDAFMTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP*
Ga0105242_106605172	3300009176	Miscanthus Rhizosphere	MDDAFMAGMRERFTDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHAVLREG*
Ga0105249_101727502	3300009553	Switchgrass Rhizosphere	MDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREGRAE*
Ga0105249_105776342	3300009553	Switchgrass Rhizosphere	IDDAFMTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS*
Ga0134128_124405341	3300010373	Terrestrial Soil	MDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKAFGVAPMGPNSHAVL
Ga0136847_107809052	3300010391	Freshwater Sediment	MTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA*
Ga0136847_112341603	3300010391	Freshwater Sediment	MTGMRQHFNDAELVELGLVTAAFTMLGRLHRTFGVAPMSPQSHAVLAGWPSSP*
Ga0136847_131889621	3300010391	Freshwater Sediment	MAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPIGPNSHAVPRKS*
Ga0134126_130870961	3300010396	Terrestrial Soil	YKPKNLPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREG*
Ga0134124_110457032	3300010397	Terrestrial Soil	MDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREG*
Ga0134122_107040141	3300010400	Terrestrial Soil	MDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKAFGVAPMGPNSHAVLREG*
Ga0134122_122454662	3300010400	Terrestrial Soil	RERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREG*
Ga0137442_10597722	3300011414	Soil	MTGMRSHFSDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA*
Ga0137388_119812412	3300012189	Vadose Zone Soil	MRQQFTDAEVVELGLITGAFIMLGRLHRAFGVAPMGPRSHTVLEKG*
Ga0137383_110626251	3300012199	Vadose Zone Soil	QQFTDAEVVELGLITGAFIMLGRLHRAFGVAPMGPRSHTVLEKG*
Ga0137367_100101726	3300012353	Vadose Zone Soil	MDDAFMARMREVFDDAELIELGLVTGAFIVLGRLHRAFGVAPMDPRTHAALAERRMIG*
Ga0157295_102568561	3300012906	Soil	MDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHTVLREG*
Ga0137404_112586972	3300012929	Vadose Zone Soil	EMRRHFTDPELVELGLITGAFLMLGRLHLAFGVAAMPPATHDVLHPPGM*
Ga0137407_102670833	3300012930	Vadose Zone Soil	VNHTTIDDAFMTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVPPMGPRSHAVLERGYDS*
Ga0153915_114838091	3300012931	Freshwater Wetlands	MKRMREHFTDAEMVELGLIAGAFIMLGRLHRAFGVAPMGPRSHAVLEKGYGQ*
Ga0153915_115083712	3300012931	Freshwater Wetlands	AGRLATSHTEIDDIFMQRMREHFTDAEMVELGLITGAFIMLGRLHRAFGVAPMGPRSHAVLEKGYGQ*
Ga0137410_105726102	3300012944	Vadose Zone Soil	VNHTTIDDAFMTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS*
Ga0137410_106199842	3300012944	Vadose Zone Soil	EKLAANHTTMDEAFMTGMRQHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS*
Ga0164303_106158661	3300012957	Soil	MASLRAHFAEDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGP*
Ga0164304_113069172	3300012986	Soil	AAIDDGFMASLRAHFAEDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGP*
Ga0157378_119562852	3300013297	Miscanthus Rhizosphere	MASLRAHFADDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGA*
Ga0180063_10118983	3300014885	Soil	EKLAAYQTTIDDAFMIRMRTLFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS*
Ga0187824_100158212	3300017927	Freshwater Sediment	MQRMREHFTDAEMVELGLIAGAFIMLGRLHRAFGVAPMGPRSHAVLEKGYGQ
Ga0187821_101974732	3300017936	Freshwater Sediment	MQRMREHFTDAEMVELGLIAGAFIMLGRLHRAFAVAPMGPRSHAVLEKGYGQ
Ga0187823_100608083	3300017993	Freshwater Sediment	MQRMREHFTDAEMVELGLIAGAFIMLGRLHRAFGVAPMGPRSHAVLEKEYGQ
Ga0184610_10719273	3300017997	Groundwater Sediment	MTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPSCHAVLERGYDA
Ga0184638_10586943	3300018052	Groundwater Sediment	MTGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAILERGYNS
Ga0184632_100178793	3300018075	Groundwater Sediment	MTGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPSCHAVLERGYDA
Ga0184609_101850592	3300018076	Groundwater Sediment	MTGMRSHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAILERGYNS
Ga0184639_100235576	3300018082	Groundwater Sediment	MTGMRQHFNDAELVELGLVTAAFTMLGRLHRTFGVAPMSPQSHAVLAGWPSSP
Ga0190265_103454812	3300018422	Soil	MRSHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGV
Ga0190265_107118103	3300018422	Soil	MTRLRERFTDAEVVELGLITGAFIMLGRLHRTFGVEPMGPNSHRVLAGE
Ga0190272_106970522	3300018429	Soil	MTGMRTHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYNA
Ga0173479_106386102	3300019362	Soil	MAGMRERFTDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHAVLREG
Ga0193723_10058143	3300019879	Soil	VNHTTIDDAFMTGMRALFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS
Ga0193725_10210442	3300019883	Soil	MTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAILERGYNS
Ga0193755_10048463	3300020004	Soil	MTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGGAPMGPRSHAILERGYNS
Ga0210378_100153253	3300021073	Groundwater Sediment	MTGMRRHFTDAELVELGLITGAFIMLGRLHRTIGVAPMGPSCHAVLERGYDA
Ga0210382_100770672	3300021080	Groundwater Sediment	MTGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA
Ga0193719_100799622	3300021344	Soil	VNHTTIDDAFMTGMRALFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPSSHAVLERGYDA
Ga0222622_100774481	3300022756	Groundwater Sediment	MSGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA
Ga0209108_101347133	3300025165	Soil	MARMRESFSDAELVELGLVTAAFIMLGRLHRTFGVAPMGPKSHAVLAGP
Ga0209321_103578821	3300025312	Soil	MARMRQSFSDAELVELGLITAAFIMLGRLHRTFGVAPMGPKSHTVLAGSPKEQSA
Ga0210083_10477883	3300025521	Natural And Restored Wetlands	DDAFMIEMRAHFTDAELVELGLITGAFIVLGRLHRTFGVAPMGPGSHAVLERGYDP
Ga0207423_10097282	3300025535	Natural And Restored Wetlands	MRNLRALFGDAEIVELGLVTGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP
Ga0210131_10652382	3300025551	Natural And Restored Wetlands	HFTDAELVELGLITGAFIVLGRLHRTFGVAPMGPRSHAVLERGYDP
Ga0210139_10447352	3300025558	Natural And Restored Wetlands	RDRTGGPVRERFTDAELVELGLVSAAFIMLGRLHPTFGVAPMSSEGHRALRGEWSA
Ga0210108_10258552	3300025560	Natural And Restored Wetlands	MSEMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP
Ga0210138_10029832	3300025580	Natural And Restored Wetlands	MSEMRAHFTDAELVELGLITGAFIVLGRLHRTFGVAPMGPRSHAVLERGYDP
Ga0207660_108807492	3300025917	Corn Rhizosphere	MAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLRED
Ga0207686_106068682	3300025934	Miscanthus Rhizosphere	MAGMRERFSDPELVELGLITAAFVMLGRLHKTFGIAPMGPNSHAVLREG
Ga0207712_100609993	3300025961	Switchgrass Rhizosphere	MAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREGRAE
Ga0207712_101240821	3300025961	Switchgrass Rhizosphere	IDDAFMTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS
Ga0210078_10569802	3300025979	Natural And Restored Wetlands	TTIDDAFMSEMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP
Ga0207703_116410322	3300026035	Switchgrass Rhizosphere	LATEHTSIDDAFMTIMRTRFDDAELVELGLITGAFVMLGRLHRAFGVAPTGPQSHAVLADGAASGKDT
Ga0207648_100504165	3300026089	Miscanthus Rhizosphere	MAGLRAHFADDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGA
Ga0209900_10212532	3300026888	Groundwater Sand	MIQMRALFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA
Ga0209706_102096523	3300027818	Freshwater Sediment	MIRMRTLFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA
Ga0209382_114819742	3300027909	Populus Rhizosphere	MARLRRVFSDAEVVELGLITAAFIMLGRLHRAFGIVPMGPHSHRVLAEGV
Ga0268265_103233273	3300028380	Switchgrass Rhizosphere	AGMRALFTDAELVELGLITGAFIMLGRLHRTFGVAPMSPRSHAVLERGYDS
Ga0268265_105686483	3300028380	Switchgrass Rhizosphere	MTIMRTRFDDAELVELGLITGAFVMLGRLHRAFGVAPMGPRSHAVLADGSGAASGKDT
Ga0268264_124283372	3300028381	Switchgrass Rhizosphere	MASLRAHFAEDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGP
Ga0247823_115323872	3300028590	Soil	DAFMTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS
Ga0247822_108418681	3300028592	Soil	RALFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDA
Ga0307293_100338682	3300028711	Soil	MSGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPSSHAVLERGYDA
Ga0247825_110119222	3300028812	Soil	VNHTAIDDAFMTGMRTHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS
Ga0307302_104425711	3300028814	Soil	AFMTGMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPSSHAVLERGYDA
(restricted) Ga0255311_10123662	3300031150	Sandy Soil	VNHPAIDDAFMTGMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDS
(restricted) Ga0255311_10192611	3300031150	Sandy Soil	MTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYSS
(restricted) Ga0255312_10879112	3300031248	Sandy Soil	MQRMREHFTDAEMVELGLIAGAFVMLGRLHRAFGVAPMGPRSHAVLEKGYGQ
Ga0307408_1006124902	3300031548	Rhizosphere	MADLRSQFADDELIELGLVTAAFVMLGRLHRAFGVAPMTPGSHAVLRPEGA
Ga0307408_1006877023	3300031548	Rhizosphere	MASLRAHFADDELVELGLITGAFVMLGRLHRTFGVAPMTEASHAVLRPDGA
Ga0307469_104210382	3300031720	Hardwood Forest Soil	MIDMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLDGGYGP
Ga0307469_117643052	3300031720	Hardwood Forest Soil	TDHAAIDDAFMAGLGAHFTDDELVELGLVTGAFVMLGRLHRTFGVAPMTEASHAVLRPEG
Ga0307468_1000547724	3300031740	Hardwood Forest Soil	MAGLRAHFTDDELVELGLVTGAFVMLGRLHRTFGVAPMTEASHAVLRPEGA
Ga0307468_1003662572	3300031740	Hardwood Forest Soil	MTGMRGHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGV
Ga0315290_114791621	3300031834	Sediment	MAGMRERFSDPELVELGLITAAFVMLGRLHKAFGVAPMGPNSHAVLREG
Ga0335085_1000159631	3300032770	Soil	MTGMRRHFSDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYGP
Ga0214472_100218285	3300033407	Soil	MARMRRTFSDAELVELGLVTGAFIVLGRLHRAFGVAPMGPRSHAVLAGAMPAPDVAD
Ga0310811_112139331	3300033475	Soil	MTDMRTRFDDAELVELGLISAAFVMLGRLHRAFGVAPMGPRSHAVLAAGAPTAPGKDT
Ga0316628_1031607612	3300033513	Soil	MTEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP
Ga0373894_034862_389_577	3300034074	Sediment Slurry	VNHTAIDDAFMIEMRRHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP
Ga0364942_0053267_1129_1290	3300034165	Sediment	MARMREAFSDAELVELGLITGAFIVLGRLHRAFGVAPMDPKTHAVLAERRMIE
Ga0370495_0238773_3_167	3300034257	Untreated Peat Soil	MDDAFMAGMRERFSDPELVELGLITAAFVMLGRLHKTFGVAPMGPNSHAVLREG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters