Metagenome / Metatranscriptome Family F055140

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F055140
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	84 residues
Representative Sequence	MSRHALSVHYVDVLPMLGLALVFLWLWLSGVSVRELCAHAALTVTGYLRPRPDPAVERALRAAFTELDRDLAEILGDRTPRSTTDR
Number of Associated Samples	95
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.37 %
% of genes near scaffold ends (potentially truncated)	30.22 %
% of genes from short scaffolds (< 2000 bps)	79.86 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (77.698 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.425 % of family members)
Environment Ontology (ENVO)	Unclassified (28.058 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.324 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.14% β-sheet: 0.00% Coil/Unstructured: 43.86%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF13459	Fer4_15	43.17
PF02774	Semialdhyde_dhC	3.60
PF00440	TetR_N	1.44
PF12850	Metallophos_2	0.72
PF04028	DUF374	0.72
PF02575	YbaB_DNA_bd	0.72
PF13424	TPR_12	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	3.60
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	3.60
COG0718	DNA-binding nucleoid-associated protein YbaB/EfbC	Transcription [K]	0.72
COG2121	Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.70 %
Unclassified	root	N/A	22.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.70 %
Unclassified	root	N/A	22.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.70 %
Unclassified	root	N/A	22.30 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.98 %
Unclassified	root	N/A	22.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	76.98 %
Unclassified	root	N/A	22.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	49.64 %
Unclassified	root	N/A	22.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.72 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	33.81 %
Unclassified	root	N/A	22.30 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	3.60 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	30.94 %
Unclassified	root	N/A	22.30 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	3.60 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.44 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.72 %

Name	Rank	Taxonomy	Distribution
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	30.94 %
Unclassified	root	N/A	22.30 %
Catenuloplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Catenuloplanes	1.44 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.44 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.72 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.72 %

Name	Rank	Taxonomy	Distribution
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	30.94 %
Unclassified	root	N/A	22.30 %
Catenuloplanes japonicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Catenuloplanes → Catenuloplanes japonicus	1.44 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.44 %
Bradyrhizobium sp. cir1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. cir1	0.72 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10295743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	652	Open in IMG/M
3300002245\|JGIcombinedJ26739_101225998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	640	Open in IMG/M
3300002245\|JGIcombinedJ26739_101286232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	622	Open in IMG/M
3300002245\|JGIcombinedJ26739_101711382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	528	Open in IMG/M
3300003321\|soilH1_10290843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1549	Open in IMG/M
3300005093\|Ga0062594_100686509	Not Available	920	Open in IMG/M
3300005327\|Ga0070658_10055408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3222	Open in IMG/M
3300005329\|Ga0070683_100149691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2213	Open in IMG/M
3300005336\|Ga0070680_100739314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847	Open in IMG/M
3300005344\|Ga0070661_101654250	Not Available	542	Open in IMG/M
3300005434\|Ga0070709_10668246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	806	Open in IMG/M
3300005434\|Ga0070709_10930770	Not Available	689	Open in IMG/M
3300005435\|Ga0070714_100558968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1096	Open in IMG/M
3300005435\|Ga0070714_101357940	Not Available	694	Open in IMG/M
3300005436\|Ga0070713_102101899	Not Available	547	Open in IMG/M
3300005455\|Ga0070663_100073348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2496	Open in IMG/M
3300005455\|Ga0070663_100075374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2465	Open in IMG/M
3300005458\|Ga0070681_10166737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2125	Open in IMG/M
3300005548\|Ga0070665_100928525	Not Available	883	Open in IMG/M
3300005564\|Ga0070664_101704504	Not Available	597	Open in IMG/M
3300005610\|Ga0070763_10241990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	975	Open in IMG/M
3300005610\|Ga0070763_10271179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	925	Open in IMG/M
3300005618\|Ga0068864_100905508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	871	Open in IMG/M
3300006028\|Ga0070717_10899466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	806	Open in IMG/M
3300006173\|Ga0070716_100309028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1103	Open in IMG/M
3300006755\|Ga0079222_10813395	Not Available	766	Open in IMG/M
3300006804\|Ga0079221_10852463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	661	Open in IMG/M
3300006804\|Ga0079221_11676265	Not Available	517	Open in IMG/M
3300006806\|Ga0079220_11469696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	583	Open in IMG/M
3300006854\|Ga0075425_100840740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1051	Open in IMG/M
3300006954\|Ga0079219_10060653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1680	Open in IMG/M
3300007982\|Ga0102924_1009013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	8807	Open in IMG/M
3300007982\|Ga0102924_1125131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1237	Open in IMG/M
3300009093\|Ga0105240_10599917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212	Open in IMG/M
3300009551\|Ga0105238_10525147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1186	Open in IMG/M
3300009551\|Ga0105238_12804206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	524	Open in IMG/M
3300009826\|Ga0123355_10568948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1361	Open in IMG/M
3300010360\|Ga0126372_12837478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	536	Open in IMG/M
3300010373\|Ga0134128_10340409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1677	Open in IMG/M
3300010373\|Ga0134128_11989716	Not Available	640	Open in IMG/M
3300010379\|Ga0136449_100306728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2888	Open in IMG/M
3300010386\|Ga0136806_1113297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1373	Open in IMG/M
3300010396\|Ga0134126_10740412	Not Available	1115	Open in IMG/M
3300010396\|Ga0134126_11660796	Not Available	702	Open in IMG/M
3300010876\|Ga0126361_10657968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1231	Open in IMG/M
3300010876\|Ga0126361_11021419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3235	Open in IMG/M
3300010876\|Ga0126361_11171468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2239	Open in IMG/M
3300010880\|Ga0126350_12108035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1394	Open in IMG/M
3300010880\|Ga0126350_12164803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1941	Open in IMG/M
3300012683\|Ga0137398_10417773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	914	Open in IMG/M
3300012930\|Ga0137407_10795427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	893	Open in IMG/M
3300013102\|Ga0157371_10527728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300013102\|Ga0157371_10745999	Not Available	735	Open in IMG/M
3300013105\|Ga0157369_10114642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Catenuloplanes → Catenuloplanes japonicus	2862	Open in IMG/M
3300013105\|Ga0157369_10329844	Not Available	1586	Open in IMG/M
3300013307\|Ga0157372_10437844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1524	Open in IMG/M
3300014169\|Ga0181531_10064320	Not Available	2157	Open in IMG/M
3300014487\|Ga0182000_10329450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	649	Open in IMG/M
3300015242\|Ga0137412_10964414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	613	Open in IMG/M
3300017932\|Ga0187814_10252794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	668	Open in IMG/M
3300020077\|Ga0206351_10554654	Not Available	1247	Open in IMG/M
3300020081\|Ga0206354_10147185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1485	Open in IMG/M
3300020081\|Ga0206354_11354803	Not Available	521	Open in IMG/M
3300020082\|Ga0206353_10963911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	657	Open in IMG/M
3300020580\|Ga0210403_10429805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1077	Open in IMG/M
3300020583\|Ga0210401_11065359	Not Available	667	Open in IMG/M
3300020583\|Ga0210401_11472193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	538	Open in IMG/M
3300020610\|Ga0154015_1113772	Not Available	969	Open in IMG/M
3300020610\|Ga0154015_1214155	Not Available	1105	Open in IMG/M
3300020610\|Ga0154015_1510565	Not Available	547	Open in IMG/M
3300021180\|Ga0210396_10292184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1444	Open in IMG/M
3300021180\|Ga0210396_10983940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	715	Open in IMG/M
3300021180\|Ga0210396_11243154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300021180\|Ga0210396_11446908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	567	Open in IMG/M
3300021401\|Ga0210393_10293261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1321	Open in IMG/M
3300021402\|Ga0210385_10005919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7358	Open in IMG/M
3300021402\|Ga0210385_10020981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4139	Open in IMG/M
3300021403\|Ga0210397_10222008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1360	Open in IMG/M
3300021403\|Ga0210397_11126238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300021404\|Ga0210389_10007782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	8282	Open in IMG/M
3300021404\|Ga0210389_10263964	Not Available	1348	Open in IMG/M
3300021404\|Ga0210389_10300517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1258	Open in IMG/M
3300021405\|Ga0210387_10117186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2246	Open in IMG/M
3300021406\|Ga0210386_10306141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1362	Open in IMG/M
3300021406\|Ga0210386_10843455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	786	Open in IMG/M
3300021406\|Ga0210386_11168215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	651	Open in IMG/M
3300021474\|Ga0210390_10538761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	982	Open in IMG/M
3300021474\|Ga0210390_10883384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	736	Open in IMG/M
3300021475\|Ga0210392_10586915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	826	Open in IMG/M
3300021475\|Ga0210392_10651737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	783	Open in IMG/M
3300021475\|Ga0210392_10747935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300021477\|Ga0210398_11308193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	569	Open in IMG/M
3300021477\|Ga0210398_11601797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	505	Open in IMG/M
3300021478\|Ga0210402_10966260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	779	Open in IMG/M
3300022467\|Ga0224712_10080449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1343	Open in IMG/M
3300022557\|Ga0212123_10016962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	8807	Open in IMG/M
3300022557\|Ga0212123_10780321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	577	Open in IMG/M
3300024288\|Ga0179589_10051269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1554	Open in IMG/M
3300025904\|Ga0207647_10333475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	860	Open in IMG/M
3300025906\|Ga0207699_10261976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1195	Open in IMG/M
3300025912\|Ga0207707_11439916	Not Available	548	Open in IMG/M
3300025916\|Ga0207663_11456261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300025916\|Ga0207663_11694390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	509	Open in IMG/M
3300025919\|Ga0207657_10601387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. cir1	858	Open in IMG/M
3300025920\|Ga0207649_10374645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1060	Open in IMG/M
3300025928\|Ga0207700_10261485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1482	Open in IMG/M
3300025928\|Ga0207700_10714615	Not Available	895	Open in IMG/M
3300025929\|Ga0207664_10399247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1222	Open in IMG/M
3300025939\|Ga0207665_10806611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	742	Open in IMG/M
3300025939\|Ga0207665_11024248	Not Available	657	Open in IMG/M
3300025981\|Ga0207640_10904692	Not Available	771	Open in IMG/M
3300026067\|Ga0207678_10086110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Catenuloplanes → Catenuloplanes japonicus	2685	Open in IMG/M
3300026078\|Ga0207702_11825366	Not Available	600	Open in IMG/M
3300026116\|Ga0207674_10077029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3341	Open in IMG/M
3300026116\|Ga0207674_10078768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3300	Open in IMG/M
3300027496\|Ga0208987_1002821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2749	Open in IMG/M
3300027528\|Ga0208985_1001183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4231	Open in IMG/M
3300027817\|Ga0209112_10002003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5072	Open in IMG/M
3300027817\|Ga0209112_10111301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	892	Open in IMG/M
3300027855\|Ga0209693_10177773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1049	Open in IMG/M
3300027895\|Ga0209624_10798407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	620	Open in IMG/M
3300027908\|Ga0209006_10818647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	753	Open in IMG/M
3300028047\|Ga0209526_10294276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1100	Open in IMG/M
3300028379\|Ga0268266_10761293	Not Available	935	Open in IMG/M
3300031231\|Ga0170824_118115758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1148	Open in IMG/M
3300031708\|Ga0310686_100444449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1735	Open in IMG/M
3300031708\|Ga0310686_111057794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	819	Open in IMG/M
3300031708\|Ga0310686_111241225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2902	Open in IMG/M
3300031715\|Ga0307476_10121889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1857	Open in IMG/M
3300031715\|Ga0307476_11215004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	552	Open in IMG/M
3300031715\|Ga0307476_11401615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	508	Open in IMG/M
3300031823\|Ga0307478_10544892	Not Available	969	Open in IMG/M
3300032770\|Ga0335085_10094270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3889	Open in IMG/M
3300032896\|Ga0335075_10001637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	36675	Open in IMG/M
3300033475\|Ga0310811_10039545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6292	Open in IMG/M
3300033544\|Ga0316215_1016217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300033547\|Ga0316212_1021842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.14%
Host-Associated	Host-Associated	20.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.10%
Plants	Host-Associated → Plants	20.14%
Aquatic	Environmental → Aquatic	5.04%
Arthropoda	Host-Associated → Arthropoda	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.04%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.88%
Freshwater	Environmental → Aquatic → Freshwater	2.16%
Roots	Host-Associated → Plants → Roots	1.44%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.20%
Loam	Environmental → Terrestrial → Soil → Loam	24.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.47%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.04%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.44%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.44%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.72%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.47%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.04%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.44%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.72%
Mine Drainage	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage	0.72%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	5.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.60%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.60%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.16%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.16%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.44%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	1.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.44%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.72%
Sediment	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.72%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010386	Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033544	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5	Host-Associated	Open in IMG/M
3300033547	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_102957431	3300001867	Forest Soil	MPWHMLSVRYVDVLPMLGLALAFLWLRLIGVSVRAQFAHAALTVTGYLRPRPDPAVEEALRTAFADFDRDLARILGDRIREPHLTADRAREKR*
JGIcombinedJ26739_1012259982	3300002245	Forest Soil	MSRHALTFHYVDVLPMIGLALVFLWLWLSGISLRELLSHGALTVTGYLRHRPDPAVENALRAAFADLDRDLARILGDRSPRKGARDC*
JGIcombinedJ26739_1012862322	3300002245	Forest Soil	MSRHVPSVRYVDVPMLGLGLVLLWVRLTGVSVRGLCASAALTVTGYLRPRPDPAVERALRAAFAELDRDLAGILGDRMPRPA
JGIcombinedJ26739_1017113821	3300002245	Forest Soil	MSRHVLSVHYVDVLPMLGLALVFLCLWLTGVSLRELCAYAALTVTGYLRPRPDPAVERALRAAFSELDRDLALILGDRTPRNTPGR*
soilH1_102908432	3300003321	Sugarcane Root And Bulk Soil	MSRHMFTFHYVDVLPMLGLAFVLLWLRLIGVGVRELFGEAALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDRLG*
Ga0062594_1006865091	3300005093	Soil	MARHLFSVHYVDVLLMLSLALAFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTPTPHLIADRAREKH*
Ga0070658_100554085	3300005327	Corn Rhizosphere	MARHLFSVHYVDVLLMLSLALAFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVDRAREKH*
Ga0070683_1001496912	3300005329	Corn Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDRLG*
Ga0070680_1007393141	3300005336	Corn Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPRDRLG*
Ga0070661_1016542501	3300005344	Corn Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLTGVGVRELFGEAALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPRDRLG*
Ga0070709_106682462	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAQHVLSIRYLDVLPMLGLALMFLWLRLTGVSVREACAHAALTVTGYLRPRPDPAIEHALRMAFADLDRDLAAILGDRTPRDRQVPPEKQ*
Ga0070709_109307701	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSRPMFTSHYVDVLPMLGLAFVFLWLRLTGVCLRELFAQGALTVTGYLRRRPNPAAEHALRTAFATIDRELAEILGDRTPRDRLG*
Ga0070714_1005589682	3300005435	Agricultural Soil	MAQHVLSVRYMDVLPMLGLALMFLWLRLTGVSVREACAHAALTVTGYLRPRPDPAIEHALRTAFADLDRDLAAILGDRTPRDRQVPPEKQ*
Ga0070714_1013579401	3300005435	Agricultural Soil	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPTVEDTLRTAFADLDRDLARILGDRTP
Ga0070713_1021018991	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSRPMFTSHYVDVLPILGLAFVFLWLRLTGVCIRELFAQGALTVTGYLRRRPNPAAEHALRTAFATIDRELAEILGDRTPRDRLG*
Ga0070663_1000733485	3300005455	Corn Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHD
Ga0070663_1000753743	3300005455	Corn Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLTGVGVRELFGEAALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDRLG*
Ga0070681_101667371	3300005458	Corn Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPTVEDTLRTAFADLDRDLARILGDRTPTPHLIADRAREKH*
Ga0070665_1009285251	3300005548	Switchgrass Rhizosphere	MARHIFSVHYVDVLLMLGIALMFLWRRLIGVSVRALFANATLTVTGYLRPRPNPAVEETLRTAFADLDRDLARILGDRTPTPHLIADRAREKH*
Ga0070664_1017045041	3300005564	Corn Rhizosphere	MARHLFSVHYVDVLLMLSLALAFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTPTPHLIAD
Ga0070763_102419902	3300005610	Soil	MPRHALSVHYVDVLPMLGFALIFLWLWLTGISVREVCVNAALTVTGYLRHRPDPALECALRVAFAELDRDLAGILGDRTPNG*
Ga0070763_102711792	3300005610	Soil	MSRHALTFHYVDVLPMIGLALVFLWLWLSGISLRELLSHGALTVTGYLRHRPDPAVENALRAAFADLDKDLARILGDRSPRKGARDC*
Ga0068856_1019634761	3300005614	Corn Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLD
Ga0068864_1009055082	3300005618	Switchgrass Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPTIEDTLRTAFADLDRDLARILGDRTPTPHLIADRAREKH*
Ga0070717_108994662	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAQHVLSVRYMDVLPMLGLALMFLWLRLTGVSVREACAHAALTVTGYLRPRPDPAIEHALRMAFADLDRDLAAILGDRTPRDRQVPPEKQ*
Ga0070716_1003090282	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MARHIFSVHYVDVLLMLGIALMFLWRRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFANLDRDLARILGDRTPAPHLIADRAREKH*
Ga0079222_108133951	3300006755	Agricultural Soil	MTRHMFSVHYVDVLLMLSLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRAPTPHLIADRSREKH*
Ga0079221_108524632	3300006804	Agricultural Soil	MTRHMFSVHYVDVLPMLGLALMFLWLRLIGVSVRARFAHAALTVAGYLRPRPDPAVEDALRTAFADLDRDLARILGDRTPAPHLAADRASGKQ*
Ga0079221_116762651	3300006804	Agricultural Soil	GLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTPTPHLIADRAREKH*
Ga0079220_114696961	3300006806	Agricultural Soil	MTRHMFSVHYVDVLPMLGLALMFLWLRLIGVSVRARFAHAALTVAGYLRPRPDPAVEDALRTAFADLDRDLARILGDR
Ga0075425_1008407401	3300006854	Populus Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFAKATLTVTGYLRPRPNRAVEDTLRTAFADLDRDLARILGDRTPTPHLIADRAREKH*
Ga0079219_100606531	3300006954	Agricultural Soil	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTPTPHLIADRAREKH*
Ga0102924_10090131	3300007982	Iron-Sulfur Acid Spring	MSRQMLSVHYVDVLPLLGLALVFLLLRLLGVRVGERCAAAALTVSGYLRPRPDPAVERAVRTAFADLDRDLAGILGDRIPDGVLDREPTNSEMR*
Ga0102924_11251312	3300007982	Iron-Sulfur Acid Spring	MSRHALSVHYVDVLPMLGFALTFLWLSLTGISVREVCANAALTVTGYLRHRPDPAVECALRVAFAELDRDLAGILGDRTPTS*
Ga0105240_105999172	3300009093	Corn Rhizosphere	LASMARHLFSVHYVDVLLMLSLALAFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVDRAREKH*
Ga0105238_105251472	3300009551	Corn Rhizosphere	MFTFHYVDVLPMLGLAFVFLWLRLISVGVRELFGEAALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDRLG*
Ga0105238_128042061	3300009551	Corn Rhizosphere	MARHLFSVHYVDVLLMLGLALIFLWLRFIVVNVRALFANATLTVTGYLRPRPDPAVEDTLRTAFADLDRDLARILGDRTPTPHL
Ga0123355_105689482	3300009826	Termite Gut	MSGHVFTFHYVDVLPMLALAFVFLWLRLIGVCVREVFGYAALTVTGYLRRRPNPATEHALRAAFVTLDRDLAEILGDRTPYDKRG*
Ga0126372_128374781	3300010360	Tropical Forest Soil	MARQMFSVHYVDVLLMLGLALAFLWLRLIGVSLRAQFAHAALTVTGYFRPRPDPAVEDALHTAFADLDQDLARILGDRTP
Ga0134128_103404091	3300010373	Terrestrial Soil	MAQHLLSVRYMNVLPMLGLALMFLWLRLTGVSVREACTHAALTVTGYLRPRPDPAIEHALRTAFADLDRDLAAILSDRTPRDRQVPPEKQ*
Ga0134128_119897161	3300010373	Terrestrial Soil	MFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAE
Ga0136449_1003067284	3300010379	Peatlands Soil	MSRHDLNVHYVDVLPMLSLALVFLWLRLIGVSVRERCENAVLAVTGYLRPRPDPAVENALRVVFADLDRDLTQILGDRRIPRTRPDC*
Ga0136806_11132972	3300010386	Sediment	MSRHDLNVHYVEVLPLLGLASVFLWLRLIGVSVREFCENVVLTVTGYLRPPPDPALESALRAAFARFDADLAEILGDRLPHDGSNH*
Ga0134126_107404122	3300010396	Terrestrial Soil	VTGTLERRLAGMARHIFSVHYVDVLLMLGIALMFLWRRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVDRAREKH*
Ga0134126_116607961	3300010396	Terrestrial Soil	MFTSHYVDVLPMLGLAFVFLWLRLTGVCIRELFAQGALTVTGYLRRRPNPAAEHALRTAFATIDRELAEILGDRTPRDRLG*
Ga0126361_106579681	3300010876	Boreal Forest Soil	MLGLALVFLWLWLTGVSLRELCAYAALTVTGYLRPRPDPAVERALRTAFSELDRDLARILGDRTPRNTPGR*
Ga0126361_110214197	3300010876	Boreal Forest Soil	MLGLALVFLWLRLTGVSLRELFAHAALTVTGYLRPRPDPAVEHALRAAFADLDRDLAEILGDRIPREH*
Ga0126361_111714683	3300010876	Boreal Forest Soil	LGFALIFLWLWLTGINVREACANAALTVTGYLRHRPDPAVECALRVAFAEFDRDLAGILGDRTPNS*
Ga0126350_121080352	3300010880	Boreal Forest Soil	MSRHALSVHYVDVLPMLGFALIFLWLWLTGINVREACANAALTVTGYLRHRPDPAVECALRVAFAEFDRDLAGILGDRTPNS*
Ga0126350_121648032	3300010880	Boreal Forest Soil	SRHVLSVHYVDVLPMLGLALVFLWLWLTGVSLRELCAYAALTVTGYLRPRPDPAVERALRTAFSELDRDLARILGDRTPRNTPGR*
Ga0137398_104177731	3300012683	Vadose Zone Soil	MLGLALVFLWLWLTGVSLRELCAYAALTVTGYLRPRPDPAVERALRAAFGELDRDLARILGDRTPRNKPGR*
Ga0137407_107954272	3300012930	Vadose Zone Soil	MSRRLFSVHYVDVLPKLGLALIFLWPRLFGVSVRELCANAALTVTGYLRPRPDPAVEHALRTAFADLDRDLAEILGDRTTRNTLDR*
Ga0157371_105277281	3300013102	Corn Rhizosphere	VHYVDVLLMLSLALAFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVDRAREKH*
Ga0157371_107459991	3300013102	Corn Rhizosphere	MFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPRDRLG*
Ga0157369_101146424	3300013105	Corn Rhizosphere	MARHIFSVHYVDVLLMLGIALMFLWRRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVDRAREKH*
Ga0157369_103298441	3300013105	Corn Rhizosphere	MFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTP
Ga0157372_104378442	3300013307	Corn Rhizosphere	MRKPAPGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPRDRLG*
Ga0181531_100643201	3300014169	Bog	MSRHVLTFHYVDVLPMIGLALVFLWLWLSGISLRELLSHGALTVTGYLRHRPDPAVENALRAAFADLDKDLARILGDRSPRKGARDC*
Ga0182000_103294501	3300014487	Soil	MARHMFSVHYVDVLLMLGLALVFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAAEDALRTAFGDLDRDLARILGDRAPAPHLIADRAREKH*
Ga0137412_109644141	3300015242	Vadose Zone Soil	MLGLALVFLWLWLTGVSLRELCAYAALTVTGYLRPRPDPAVERALRAAFGELDRDLGRILGDRSPRN
Ga0187814_102527942	3300017932	Freshwater Sediment	MSRHVLSVHYVDVLPMLGLALVILWLWLTGVSLRELCAYASLTVTGYLRPRPDPAVEHALRVAFGELDRDLARILGDR
Ga0206351_105546542	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPRDRLG
Ga0206354_101471851	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MARHLFSVHYVDVLLMLSLALAFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVDRAREKH
Ga0206354_113548031	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELA
Ga0206353_109639111	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDRLG
Ga0210403_104298052	3300020580	Soil	MSRHVLSVHYVDVLPMLGLALVFLWLWLTGVSLRELCAYAALTVTGYLRPRPDPAVERALRAAFSELDRDLALILGDRTPRNTPGR
Ga0210401_110653591	3300020583	Soil	MSRHALSIGFVDVLPMLGVALVFLWLRLTRISVRELCAHAALTVTGYLRPRPAPALERALRTAFADLDTDLAAILGDRIPRSTLDH
Ga0210401_114721932	3300020583	Soil	MSRHALSVHYVDVLPMLGLALVFLWLWLRGVSVRGLCAYAALTVTGYLRRRPDPAVERALRAAFTELDRDLAEILGDRTPRNTA
Ga0154015_11137721	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MARHLFSVHYVDVLLMLSLALVFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVD
Ga0154015_12141551	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLTGVGVRELFGEAALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDR
Ga0154015_15105651	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MPRHMFTFHYIDVLPMLGLAFVFLWLRLISVGVRELFGEAALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDRLG
Ga0210396_102921842	3300021180	Soil	MSRHTFTFRCVDVVPMIGFAVVSLWVRLIGVSGLDVRKLCAQAALTVTGYLRPRPDPALENALRAAFEDLDRDLAGILGDRRRNR
Ga0210396_109839401	3300021180	Soil	GPSRGDWPIMSRHALSVHYLDVLPMLGLALVFLWLWLRGVSVRGLCAYAALTVTGYLRRRPDPAVERALRAAFTELDRDLAEILGDRTPRDTPDRGPSPQSRPTHRN
Ga0210396_112431542	3300021180	Soil	FHYVDVLPMIGLALVFLWLWLSGISLRELLSHGALTVTGYLRHRPDPAVENALRAAFADLDKDLARILGDRSPRKGARDC
Ga0210396_114469081	3300021180	Soil	MPRHALSVHYVDVLPMLGFALIFLWLWLTGISVREVCANAALTVTGYLRHRPDPALECALRAAFAELDRDLAGILGDRTPNG
Ga0210393_102932612	3300021401	Soil	MSRHALSVHYVDVLPMLGFALTFLWLSLTGISVREVCANAALTVTGYLRHRPDPAVECALRVAFAELDRDLAGILGDRTPNS
Ga0210385_100059195	3300021402	Soil	MSRHALTFRYVDVPPMIGLGLVSLWLWLIGVNRREVREVFEELALTVSGYLRPRPDPALENALRAAFADIDRDLAAILGHRRPDRQ
Ga0210385_100209814	3300021402	Soil	YVDVLPMLGLALFFLWLCLSGFSVRDLCASAALTVTGYLRPRPDPAVERALRAAFAELDRDLAEILGDRIPRSTPDR
Ga0210397_102220082	3300021403	Soil	MSRHALSVHYVDVLPMLGFALTFLWLSLTGISVREVCANAALTVTGYLRHRPDPAVECALRVAFAELDRDLAGILGDRTPNG
Ga0210397_111262382	3300021403	Soil	FRYVDVVPMIGFALIFLWLWLIGISGRDVRKLYAQAALTVTGYLRPRPDPALENALRAAFADLDRDLAGILGDRRRNRQ
Ga0210389_100077825	3300021404	Soil	MSRHTFTFRYVDVVPMIGFALIFLWLWLIGISGRDVRKLCAQAALTVTGYLRPRPDPALENALRAAFADLDRDLAGILGDRRRNRQ
Ga0210389_102639641	3300021404	Soil	MSRPALSIGFVDVLPMLGVALVFLWLRLTRISVRELCAHAALTVTGYLRPRPAPALERALRTAFADLDKDLAAILA
Ga0210389_103005171	3300021404	Soil	MIGFAVVSLWVRLIGVSGLDVRKLCAQAALTVTGYLRPRPDPALENALRAAFEDLDRDLAGILGDRRRNR
Ga0210387_101171861	3300021405	Soil	MPRHALSVHYVDVLPMLGFALIFLWLRLTGISVREVCANAALTVTGYLRHRPDPALECALRVAFAELDRDLAGILGDRTPNG
Ga0210386_103061412	3300021406	Soil	MLGLALFFLWLCLTGFSVRDLCASTALTVTGYLRPRPDPAVERALRAAFAELDRDLAGILGDRIPRGTPDR
Ga0210386_108434551	3300021406	Soil	VFLWLRLTRISVRELCAHAALTVTGYLRPRPAPALERALRTAFADLDTDLAAILGDRIPRSTLDH
Ga0210386_111682151	3300021406	Soil	MSRHALSVHYVDVLPMLGLALVFLWLWLRGLSVRALCAYAALTVTGYLRRRPDPAVERALRAAFTELDRDLAEILGDRTPRNTPDRGPSPQSRPSNRS
Ga0210390_105387612	3300021474	Soil	ALIFLWLRLTGISVREVCANVALTVTGYLRHRPDPALECALRVAFAELDRDLAGILGDRTPNG
Ga0210390_108833841	3300021474	Soil	PMIGLGLVSLWLWLIGVNRREVREVFEELALTVSGYLRPRPDPALENALRAAFADIDRDLAAILGHRRPDRQ
Ga0210392_105869151	3300021475	Soil	MTRHVPSVRYVDVLPMLGLGLVFLWLCLTGVSVRELCASAALTVTGYLRPRPDPAVERALRAAFAELDRDLAGILGDRIPRPRPDH
Ga0210392_106517371	3300021475	Soil	MSRHALSVHYVDVLPMLGFALIFLWLWLTGISVREVCANAALTVTGYLRHRPDPAVECALRVAFAELDRDLAGILGDRTPNS
Ga0210392_107479351	3300021475	Soil	MSRHMLSVRYVDVLPMLGLALVFLWLRITGFSVRKLCAHAALTVTGYLRPRPAPALERALRTAFADLDKDLAAILANRTPRNTLDH
Ga0210398_113081931	3300021477	Soil	RGDWPIMSRHALSVHYVDVLPMLGLALVFLWLWLRGVSVRGLCAYAALTVTGYLRRRPDPAVERALRAAFTELDRDLAEILGDRTPRNTADRGPSPQSRPSPQSRPSPQSRPSHRS
Ga0210398_116017971	3300021477	Soil	MSRYVPSVRYVDVLPMLGVALFFLWLCLSGFSVRDLCASAALTVTGYLRPRPDPAVERALRAAFAELDRDLAGIL
Ga0210402_109662601	3300021478	Soil	MSRHMLSVRYVDVLPMLGVALVFLWLRLTGISVRKHCAHAALTVAGYFRPRPAPALERALRAAFADLDRDLAAILADRTPRNTLDH
Ga0224712_100804491	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MARHLFSVHYVDVLLMLSLALAFLWLRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVDRAREKHPASSLPA
Ga0212123_100169621	3300022557	Iron-Sulfur Acid Spring	MSRQMLSVHYVDVLPLLGLALVFLLLRLLGVRVGERCAAAALTVSGYLRPRPDPAVERAVRTAFADLDRDLAGILGDRIPDGVLDREPTNSEMR
Ga0212123_107803211	3300022557	Iron-Sulfur Acid Spring	YVDVLPMLGFALIFLWLWLTGISVREVCANAALTVTGYLRHRPDPAVECALRAAFAELDRDLAGILGDRTPNS
Ga0179589_100512692	3300024288	Vadose Zone Soil	MSRHVLSVHYVDVLPMLGLAMVFLWLRLIGVSVRERCAHAVLTVTGYLRPRPDPAVERALRTAFADLDRDLAEILGDRTPRNTLDRSPSTRKRR
Ga0207647_103334752	3300025904	Corn Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALVANATLTVTGYLRPRPNPAVEDTLRTAFANLDRDLARILGDRTPAPHLIADRAREKH
Ga0207699_102619761	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSRPMFTSHYVDVLPMLGLAFVFLWLRLTGVCLRELFAQGALTVTGYLRRRPNPAAEHALRTAFATIDRELAEILGD
Ga0207707_114399161	3300025912	Corn Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPTVEDTLRTAFADLDRDLARILGDRTPTPHLIADRAREKH
Ga0207663_114562611	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TSHYVDVLPMLGLAFVFLWLRLTGVCLRELFAQGALTVTGYLRRRPNPAAEHALRTAFATIDRELAEILGDRTPRDRLG
Ga0207663_116943901	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSRHVLNVRYMDVLPMLGLALMFLWLRLTGVSVRDACAHAALTVTGYLRPRPDPAIEHALRTAFADLDRDLAAILGDRPPLNRRPPPEKQ
Ga0207657_106013872	3300025919	Corn Rhizosphere	MARHLFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTPTPHLIADRAREKH
Ga0207649_103746451	3300025920	Corn Rhizosphere	FVFLWLRLTGVGVRELFGEAALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDRLG
Ga0207700_102614853	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSRPMFTSHYVDVLPILGLAFVFLWLRLTGVCIRELFAQGALTVTGYLRRRPNPAAEHALRTAFATIDRELAEILGDRTPRDRLG
Ga0207700_107146151	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFANLDRDLARILGDRTPTPHLIADRAREKH
Ga0207664_103992471	3300025929	Agricultural Soil	MAQHVLSVRYMDVLPMLGLALMFLWLRLTGVSVREACAHAALTVTGYLRPRPDPAIEHALRTAFADLDRDLAAILGDRTPRDRQVPPEKQ
Ga0207665_108066111	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSRPMFTSHYVDVLPMLGLAFVFLWLRLTGVCLRELFAQGALTVTGYLRRRPNPAAEHALRTAFATIDRELAEILGDRTPRDRLG
Ga0207665_110242481	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MARHIFSVHYVDVLLMLGIALMFLWRRLIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFANLDRDLARILGDRTPAPHLIADRAREKH
Ga0207640_109046921	3300025981	Corn Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPAVEETLRTAFADLDRDLARILGDRTPTPHLIAD
Ga0207678_100861103	3300026067	Corn Rhizosphere	MARHLFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPAVEDTLRTAFADLDRDLARILGDRTSAPHLIVDRAREKH
Ga0207702_118253661	3300026078	Corn Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLIGVGVRELFGETALTVTGHLRRRPNPAAEQALRATFATLDR
Ga0207674_100770291	3300026116	Corn Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPTVEDTLRTAFADLDRDLARILGDRTPAPHLIADRAREKH
Ga0207674_100787681	3300026116	Corn Rhizosphere	MSRHMFTFHYVDVLPMLGLAFVFLWLRLTGVGVRELFGEAALTVTGHLRRRPNPAAEQALRATFATLDRELAEILGDRTPHDRLG
Ga0208987_10028213	3300027496	Forest Soil	MTRHVPSVRYVDVLPMLGLGLVFLWLWLTGVSVRELCASAALTVTGYLRPRPDPAVERALRAAFAELDRDLAGILGDRIPRPMPDL
Ga0208985_10011832	3300027528	Forest Soil	MSRHVPSVRYVGVLPMLGLGLVFLWRRLSGVSVRELCASAALTVTGYLRPRPDPAVERALRAAFAELDRDLAGVLGDRIPRPTPNR
Ga0209112_100020032	3300027817	Forest Soil	MSRHTFTFRCVDVVPMIGFALVSLWVRLIGVSGLDVRKLCAQAALTVTGYLRPRPDPALENALRAAFADLDRDLAEILGDRRPNRQ
Ga0209112_101113012	3300027817	Forest Soil	GLGLVLLWVRLTSVSVRGLCASAALTVTGYLRRRPDPAVERALRAAFAELDRDLAEILGDRMPRPAPDR
Ga0209693_101777731	3300027855	Soil	MPRHALSVHYVDVLPMLGFALIFLWLWLTGISVREVCVNAALTVTGYLRHRPDPALECALRVAFAELDRDLAEILGDRTPNG
Ga0209624_102935311	3300027895	Forest Soil	MSRHVPSVRYVDVPMLGLGLVLLWVRLTGVSVRGLCASAALTVTGYLRPRPDPAVERALRAAFAELDRDL
Ga0209624_107984071	3300027895	Forest Soil	MSRHVLSVRYVDVLPMLGLGLVFLWLCLTGVSVRELCASAALTVTGYLRPRPDPAVERALRAAFAELDRDLA
Ga0209006_108186471	3300027908	Forest Soil	MSRHVPSVRYVDVPMLGLGLVLLWVRLTGVSVRGLCASAALTVTGYLRPRPDPAVERALRAAFAELDRDLAGILGDRMPRPAPDR
Ga0209526_102942761	3300028047	Forest Soil	MSRHVLSVHYVDVLPMLGLALVFLCLWLTGVSLRELCAYAALTVTGYLRPRPDPAVERALRAAFSELDRDLARILGDRTPRNTPGR
Ga0268266_107612932	3300028379	Switchgrass Rhizosphere	MARHMFSVHYVDVLLMLGLALMFLWLRFIGVSVRALFANATLTVTGYLRPRPNPAVEETLRTAFADLDRDLARILGDRTPTPHLIADRAREKH
Ga0170824_1181157582	3300031231	Forest Soil	MSRHMLSGHYVDVLLVLGIVLVFLWLRLSAVNVRKFFAHAALTVTGYLRPRPDPAVERALCAAFAEFDRELSVILADRPPRDALGR
Ga0310686_1004444491	3300031708	Soil	MSRHDFNVHYVDVLAMLGLAFVFAWLGLIGVNVRALCANAALTVTGYLRPRTDPALENGLRAAFADLDRELAEILGDHIPRNRPDH
Ga0310686_1110577942	3300031708	Soil	MSRHVLSVHYVDVLPMLGLALVFLWLWLSGVSVRELCADAALTVTGYLRPRPDPAAEHALRAAFTELDRDLAEILGDRTPRNTPDR
Ga0310686_1112412253	3300031708	Soil	MSRHAFTFHYVDVLPMIGLALVFLWLWLSGISLRELLSHGALTVTGYLRHRPDPAVENALRAAFADLDKDLARILGDRSPRKGARDC
Ga0307476_101218893	3300031715	Hardwood Forest Soil	MSRHALSVHYVDVLPMLGLALVFLWLWLRGLSVRELCAYAALTVTGYLRRRPDPAVERALRAAFTELDRDLAEILGDRTPRNTPDRGPSPQSRPSNRS
Ga0307476_112150041	3300031715	Hardwood Forest Soil	MSRQVLSAQYVDVLPLLGLALVFLLVRLLGPRMGERCAAAALTVSGYLRPRPDPAVERAVRTAFADLDRDLAGILGDRTPAGVLDRQPTRSKLR
Ga0307476_114016151	3300031715	Hardwood Forest Soil	MSRHALSVHYVDVLPMLGLALVFLWLWLSGVSVRELCAHAALTVTGYLRPRPDPAVERALRAAFTELDRDLAEILGDRTPRSTTDR
Ga0307478_105448922	3300031823	Hardwood Forest Soil	MPRHALSVHYVDVLPMLGFALIFLWLWLTGISVREVCANAALTVTGYLRHRPDPALECALRVAFAELDRDLAGILGDRTPKS
Ga0335085_100942703	3300032770	Soil	MMRHVFSVHYVYALPMLGLAIVCLWLWLTGVSIRELFAYAALTVSGYLRPRPDPVAEHTLRGAFADLDKKLASILGDRTPYNTFDR
Ga0335075_100016376	3300032896	Soil	MSRHVLNVRYVDVLPMLGLALFILWLRLSRLSVRELCADAALTISGYVRPRPDPVTERRLRVAFADLDRELAAILGDRTKRTAFDG
Ga0310811_100395453	3300033475	Soil	MSRPMFTFHYVDVLPLLGLAFVFLWLRLIGVCFRELFAQGALTVTGYLRRPPNPAAERALRTAFATIDRELAEILGDRTPRDRLG
Ga0316215_10162172	3300033544	Roots	MIGLALVFLWLRLSGVNLRELLSHGALTVTGYLRHRPDPAVENALRAAFADLDKDLARILGDRSPRKGARDC
Ga0316212_10218422	3300033547	Roots	MSRHAFTFHYVDVLPMIGLALVFLWLRLSGVNLRELLSHGALTVTGYLRHRPDPAVENALRAAFADLDKDLARILGDRSPRKGARDC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055140

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences