Metagenome / Metatranscriptome Family F055067

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055067
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	40 residues
Representative Sequence	HESLGYELAAVAGEGGFEPSELVVPGVPEESTEPPDQPD
Number of Associated Samples	113
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.40 %
% of genes from short scaffolds (< 2000 bps)	88.49 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.590 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.460 % of family members)
Environment Ontology (ENVO)	Unclassified (19.424 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.799 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF02781	G6PD_C	7.19
PF13193	AMP-binding_C	2.88
PF01593	Amino_oxidase	2.16
PF01872	RibD_C	2.16
PF00083	Sugar_tr	2.16
PF00561	Abhydrolase_1	1.44
PF03704	BTAD	1.44
PF13450	NAD_binding_8	1.44
PF07969	Amidohydro_3	1.44
PF00266	Aminotran_5	1.44
PF09126	NaeI	1.44
PF01636	APH	1.44
PF00155	Aminotran_1_2	1.44
PF00005	ABC_tran	0.72
PF01906	YbjQ_1	0.72
PF00067	p450	0.72
PF12679	ABC2_membrane_2	0.72
PF00248	Aldo_ket_red	0.72
PF12804	NTP_transf_3	0.72
PF00313	CSD	0.72
PF04961	FTCD_C	0.72
PF04909	Amidohydro_2	0.72
PF05336	rhaM	0.72
PF07702	UTRA	0.72
PF12681	Glyoxalase_2	0.72
PF13469	Sulfotransfer_3	0.72
PF00768	Peptidase_S11	0.72
PF08044	DUF1707	0.72
PF07883	Cupin_2	0.72
PF07730	HisKA_3	0.72
PF04014	MazE_antitoxin	0.72
PF01047	MarR	0.72
PF04402	SIMPL	0.72
PF01545	Cation_efflux	0.72
PF13602	ADH_zinc_N_2	0.72
PF13191	AAA_16	0.72
PF00730	HhH-GPD	0.72
PF00196	GerE	0.72
PF03795	YCII	0.72
PF01979	Amidohydro_1	0.72
PF03551	PadR	0.72
PF12802	MarR_2	0.72
PF12680	SnoaL_2	0.72
PF05977	MFS_3	0.72
PF00440	TetR_N	0.72
PF13006	Nterm_IS4	0.72
PF01243	Putative_PNPOx	0.72
PF02560	Cyanate_lyase	0.72
PF07992	Pyr_redox_2	0.72
PF12730	ABC2_membrane_4	0.72
PF01828	Peptidase_A4	0.72
PF07722	Peptidase_C26	0.72
PF00102	Y_phosphatase	0.72
PF03793	PASTA	0.72
PF00113	Enolase_C	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	7.19
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.16
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.16
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	1.44
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	1.44
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.72
COG2453	Protein-tyrosine phosphatase	Signal transduction mechanisms [T]	0.72
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.72
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	0.72
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	0.72
COG3254	L-rhamnose mutarotase	Cell wall/membrane/envelope biogenesis [M]	0.72
COG3404	Formiminotetrahydrofolate cyclodeaminase	Amino acid transport and metabolism [E]	0.72
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	0.72
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.72
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.72
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.72
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.72
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.72
COG5599	Protein tyrosine phosphatase	Signal transduction mechanisms [T]	0.72
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.72
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.72
COG2124	Cytochrome P450	Defense mechanisms [V]	0.72
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.72
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.72
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.72
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.72
COG1513	Cyanate lyase	Inorganic ion transport and metabolism [P]	0.72
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.72
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.72
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.72
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.72
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.72
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.72
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.59 %
Unclassified	root	N/A	37.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.59 %
Unclassified	root	N/A	37.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.59 %
Unclassified	root	N/A	37.41 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.13 %
Unclassified	root	N/A	37.41 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.25 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.18 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5.76 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.44 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.72 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.72 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.72 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.32 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.44 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.72 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.32 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1.44 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.72 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.72 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.72 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.72 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.32 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.72 %
Actinomadura barringtoniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura barringtoniae	0.72 %
Micromonospora deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora deserti	0.72 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	0.72 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.72 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.72 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.41 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.32 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	0.72 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.72 %
Actinomadura barringtoniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura barringtoniae	0.72 %
Micromonospora deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora deserti	0.72 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.72 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.72 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_107455778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	663	Open in IMG/M
3300000956\|JGI10216J12902_106955350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	858	Open in IMG/M
3300001356\|JGI12269J14319_10331568	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300001471\|JGI12712J15308_10011385	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M
3300001653\|JGI20275J16321_101118	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300004082\|Ga0062384_100166146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1268	Open in IMG/M
3300004152\|Ga0062386_101387597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300005437\|Ga0070710_10404549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	916	Open in IMG/M
3300005437\|Ga0070710_10414804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	905	Open in IMG/M
3300005439\|Ga0070711_102049721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	503	Open in IMG/M
3300005547\|Ga0070693_100773050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	710	Open in IMG/M
3300005549\|Ga0070704_100242916	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300005578\|Ga0068854_100386316	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300005602\|Ga0070762_11099171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300005610\|Ga0070763_10979286	Not Available	506	Open in IMG/M
3300005921\|Ga0070766_10548140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	773	Open in IMG/M
3300005921\|Ga0070766_11033624	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300006175\|Ga0070712_100457759	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300006175\|Ga0070712_101506972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300006176\|Ga0070765_101421212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	653	Open in IMG/M
3300006804\|Ga0079221_10892489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	651	Open in IMG/M
3300006806\|Ga0079220_10709435	Not Available	741	Open in IMG/M
3300006953\|Ga0074063_14075228	Not Available	703	Open in IMG/M
3300009520\|Ga0116214_1278142	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300009521\|Ga0116222_1524410	All Organisms → cellular organisms → Bacteria → Terrabacteria group	519	Open in IMG/M
3300009698\|Ga0116216_10368839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	872	Open in IMG/M
3300009698\|Ga0116216_10897793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300010043\|Ga0126380_11754370	Not Available	560	Open in IMG/M
3300010362\|Ga0126377_12594797	Not Available	582	Open in IMG/M
3300010373\|Ga0134128_12872795	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300010373\|Ga0134128_13076236	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010376\|Ga0126381_102818905	Not Available	693	Open in IMG/M
3300010379\|Ga0136449_100505021	Not Available	2098	Open in IMG/M
3300010396\|Ga0134126_12747051	Not Available	534	Open in IMG/M
3300010398\|Ga0126383_11768425	Not Available	707	Open in IMG/M
3300010877\|Ga0126356_10427124	Not Available	1217	Open in IMG/M
3300011120\|Ga0150983_15475935	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300012200\|Ga0137382_10591033	All Organisms → cellular organisms → Bacteria → Terrabacteria group	792	Open in IMG/M
3300012486\|Ga0157331_1032888	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300012971\|Ga0126369_13617318	Not Available	506	Open in IMG/M
3300013100\|Ga0157373_10988105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	628	Open in IMG/M
3300014325\|Ga0163163_12316654	Not Available	596	Open in IMG/M
3300014501\|Ga0182024_10858046	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300016294\|Ga0182041_11124711	Not Available	714	Open in IMG/M
3300016294\|Ga0182041_11478116	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300016357\|Ga0182032_11586855	Not Available	569	Open in IMG/M
3300016387\|Ga0182040_11801587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	524	Open in IMG/M
3300016404\|Ga0182037_12048028	Not Available	514	Open in IMG/M
3300017821\|Ga0187812_1019618	All Organisms → cellular organisms → Bacteria	2336	Open in IMG/M
3300017924\|Ga0187820_1005924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2859	Open in IMG/M
3300017928\|Ga0187806_1060443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1165	Open in IMG/M
3300017932\|Ga0187814_10036156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1831	Open in IMG/M
3300017942\|Ga0187808_10263656	Not Available	772	Open in IMG/M
3300017942\|Ga0187808_10454125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300017955\|Ga0187817_11023941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300017961\|Ga0187778_10101164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1791	Open in IMG/M
3300017961\|Ga0187778_10699410	Not Available	685	Open in IMG/M
3300017974\|Ga0187777_10563096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	801	Open in IMG/M
3300018001\|Ga0187815_10245738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	757	Open in IMG/M
3300018007\|Ga0187805_10056940	Not Available	1756	Open in IMG/M
3300018030\|Ga0187869_10262972	Not Available	834	Open in IMG/M
3300018043\|Ga0187887_10031850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3314	Open in IMG/M
3300018046\|Ga0187851_10852480	Not Available	512	Open in IMG/M
3300018085\|Ga0187772_11454383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura barringtoniae	510	Open in IMG/M
3300018086\|Ga0187769_10070915	Not Available	2457	Open in IMG/M
3300020581\|Ga0210399_10521831	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300021171\|Ga0210405_10369770	Not Available	1130	Open in IMG/M
3300021180\|Ga0210396_10775259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	824	Open in IMG/M
3300021180\|Ga0210396_10950072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	730	Open in IMG/M
3300021181\|Ga0210388_10098851	All Organisms → cellular organisms → Bacteria	2496	Open in IMG/M
3300021181\|Ga0210388_10634062	Not Available	933	Open in IMG/M
3300021181\|Ga0210388_11223494	Not Available	636	Open in IMG/M
3300021402\|Ga0210385_10179022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1532	Open in IMG/M
3300021407\|Ga0210383_11765980	Not Available	505	Open in IMG/M
3300021432\|Ga0210384_10152182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2076	Open in IMG/M
3300021432\|Ga0210384_10950488	Not Available	761	Open in IMG/M
3300021432\|Ga0210384_11281914	All Organisms → cellular organisms → Bacteria → Terrabacteria group	637	Open in IMG/M
3300021477\|Ga0210398_10004801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12636	Open in IMG/M
3300021478\|Ga0210402_10644718	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300022715\|Ga0242678_1017113	Not Available	846	Open in IMG/M
3300024279\|Ga0247692_1049077	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300025901\|Ga0207688_10070935	All Organisms → cellular organisms → Bacteria	1977	Open in IMG/M
3300025912\|Ga0207707_10916771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300025915\|Ga0207693_10081592	All Organisms → cellular organisms → Bacteria	2532	Open in IMG/M
3300025915\|Ga0207693_10540734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora deserti	909	Open in IMG/M
3300025929\|Ga0207664_10161145	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300025929\|Ga0207664_11211135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	673	Open in IMG/M
3300025929\|Ga0207664_11691207	Not Available	555	Open in IMG/M
3300025941\|Ga0207711_10796425	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300027652\|Ga0209007_1103049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	717	Open in IMG/M
3300027767\|Ga0209655_10284771	Not Available	535	Open in IMG/M
3300027853\|Ga0209274_10429547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	683	Open in IMG/M
3300027889\|Ga0209380_10076011	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300028780\|Ga0302225_10342610	Not Available	706	Open in IMG/M
3300028806\|Ga0302221_10170369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	956	Open in IMG/M
3300028879\|Ga0302229_10326432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	687	Open in IMG/M
3300030580\|Ga0311355_10307842	Not Available	1589	Open in IMG/M
3300030617\|Ga0311356_10185353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2134	Open in IMG/M
3300031233\|Ga0302307_10177634	Not Available	1101	Open in IMG/M
3300031474\|Ga0170818_103038402	Not Available	591	Open in IMG/M
3300031525\|Ga0302326_11062816	Not Available	1129	Open in IMG/M
3300031545\|Ga0318541_10557680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	641	Open in IMG/M
3300031561\|Ga0318528_10334651	Not Available	813	Open in IMG/M
3300031572\|Ga0318515_10635950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	566	Open in IMG/M
3300031680\|Ga0318574_10757430	Not Available	569	Open in IMG/M
3300031681\|Ga0318572_10478301	Not Available	742	Open in IMG/M
3300031681\|Ga0318572_10635552	Not Available	636	Open in IMG/M
3300031708\|Ga0310686_103363765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1761	Open in IMG/M
3300031723\|Ga0318493_10055804	All Organisms → cellular organisms → Bacteria	1883	Open in IMG/M
3300031723\|Ga0318493_10331830	Not Available	825	Open in IMG/M
3300031744\|Ga0306918_10229701	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300031747\|Ga0318502_10199762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1156	Open in IMG/M
3300031747\|Ga0318502_10651431	Not Available	635	Open in IMG/M
3300031779\|Ga0318566_10494093	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031792\|Ga0318529_10180761	Not Available	976	Open in IMG/M
3300031912\|Ga0306921_12759925	Not Available	503	Open in IMG/M
3300031942\|Ga0310916_10534253	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300031942\|Ga0310916_11395434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	574	Open in IMG/M
3300032063\|Ga0318504_10631396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	515	Open in IMG/M
3300032064\|Ga0318510_10014587	All Organisms → cellular organisms → Bacteria	2383	Open in IMG/M
3300032076\|Ga0306924_12383078	Not Available	534	Open in IMG/M
3300032174\|Ga0307470_11067681	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300032261\|Ga0306920_101437914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	987	Open in IMG/M
3300032770\|Ga0335085_11928597	Not Available	601	Open in IMG/M
3300032805\|Ga0335078_10805612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1144	Open in IMG/M
3300032805\|Ga0335078_12706141	Not Available	505	Open in IMG/M
3300032828\|Ga0335080_10801965	All Organisms → cellular organisms → Bacteria → Terrabacteria group	973	Open in IMG/M
3300032828\|Ga0335080_11878966	Not Available	583	Open in IMG/M
3300032896\|Ga0335075_10070923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4721	Open in IMG/M
3300032896\|Ga0335075_11439328	Not Available	578	Open in IMG/M
3300032898\|Ga0335072_10670425	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300033134\|Ga0335073_11441797	Not Available	669	Open in IMG/M
3300033134\|Ga0335073_11999078	Not Available	530	Open in IMG/M
3300033158\|Ga0335077_10543856	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300033290\|Ga0318519_10636752	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300034268\|Ga0372943_0741175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	650	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.40%
Host-Associated	Host-Associated	3.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.89%
Aquatic	Environmental → Aquatic	11.51%
Plants	Host-Associated → Plants	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.86%
Freshwater	Environmental → Aquatic → Freshwater	11.51%
Peat	Environmental → Terrestrial → Peat	5.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.44%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.64%
Loam	Environmental → Terrestrial → Soil → Loam	17.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.95%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.51%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.44%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.32%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.44%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.44%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.46%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.47%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.04%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.04%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.60%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.16%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.16%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001653	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1074557782	3300000955	Soil	AREPLGYELAAVTGDGSFEPGELVVPSIPEESTGPPDKPD*
JGI10216J12902_1069553502	3300000956	Soil	LGYELAAVAGEGGFEPGELVIPSVPEESTGPPDKPA*
JGI12269J14319_103315681	3300001356	Peatlands Soil	TPVPAARESLGYELAAVAAEGGFEPAELVVPASPEQSAEPPDQPN*
JGI12712J15308_100113854	3300001471	Forest Soil	AESLGYELAAVAGEGAFEPSGLVPAAGEEGTETSDTPD*
JGI20275J16321_1011182	3300001653	Forest Soil	RQSLSEELAAVAGEGAFEPSELVVPGVPEESTEPPDKPR*
Ga0062384_1001661461	3300004082	Bog Forest Soil	PVPAAHESLGYELAAVAGEGGFEPSELVVPDVRGKSTEPPDKPD*
Ga0062386_1013875972	3300004152	Bog Forest Soil	PAARESLGYELAAVAGEGSFEPGELVVPGVPEQSTEPPDKPG*
Ga0070710_104045491	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AHESLGYELAAVAGEGGFEPSELVVPGVSEESAEPPDQLD*
Ga0070710_104148041	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ESLGYELAAVAGEGGFEPSELVVPDVAGEGAELPGKPADPD*
Ga0070711_1020497213	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	AREPLGYELAAVAGEGGFEPGELVVPSVPEESTGPPDKPD*
Ga0070693_1007730502	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	AREPLGYELAAVAGEGGFEPSELAVPGVPEESTEPPDKPD*
Ga0070704_1002429161	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	AAREPLGYELAAVAGDGSFEPGELVVPSIPEESTGPPDKPD*
Ga0068854_1003863162	3300005578	Corn Rhizosphere	LGYELAAVAGDGSFEPGELVVPSIPEESTGPPDKPD*
Ga0070762_110991712	3300005602	Soil	SLGYELAAVAGEGGFEPSELVVPDATGEGAEPPGKTGKRD*
Ga0070763_109792861	3300005610	Soil	RESLGYELAAVAGEGGFEPGELVPGIPEESTEPPDKPG*
Ga0070766_105481403	3300005921	Soil	ARESLGYELAAVAAEGVFEPSELVVPGVPEESTEPPDKPS*
Ga0070766_110336241	3300005921	Soil	ESLGYELAAVAGEGGFEPGELVVPSVLEESTEPPDNPD*
Ga0070712_1004577591	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GYELAAVAGEGGFEPSELVVPGVPEQGTEPPDQPD*
Ga0070712_1015069722	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LGYELAAGAAEGGFEPSELVIPEMPEESAEPPGPQ*
Ga0070765_1014212121	3300006176	Soil	AAHESLGYELAAVAGEGGFEPSELVVPGVPEQSTEPPDKPG*
Ga0079221_108924892	3300006804	Agricultural Soil	RTLAPAAPEPLGYELAAVAGDGSFEPGELVVPSGPEESTAPPDKPD*
Ga0079220_107094352	3300006806	Agricultural Soil	GYELAAVAGEGGFEPSELVVPGVPEESTEPPDKPD*
Ga0074063_140752282	3300006953	Soil	ESLGYELAAVAGEGGFEPGELIVPSVPEESTGPPDKPA*
Ga0116214_12781422	3300009520	Peatlands Soil	AAVAAEGSFEPSELVVPDVPGDGAERPDKPPEPD*
Ga0116222_15244102	3300009521	Peatlands Soil	YELAAVAAEGGFEPSELVVPGVQEESTEPPDKPG*
Ga0116216_103688391	3300009698	Peatlands Soil	AARESLGYELAAVAGEGGFEPSELVVPGLPEESTEPSDKPD*
Ga0116216_108977932	3300009698	Peatlands Soil	APAGHESLGYELAAVAGEGGFEPSELVVPGVPEQSTEPPDKPG*
Ga0126380_117543702	3300010043	Tropical Forest Soil	RRTPAPAAPESLGYELAAVAGEGGFEPSELVVPSVPDESTGPPAKPD*
Ga0126377_125947971	3300010362	Tropical Forest Soil	SLGYELAAVAGEGGFEPSELVVPSVPDESTGPPAKPD*
Ga0134128_128727952	3300010373	Terrestrial Soil	YELAAVAGEGSFEPGELVVPSIPEESTGPPDKPD*
Ga0134128_130762361	3300010373	Terrestrial Soil	RRTLVPAAREPLGYELAAVAGDGSFEPGELVVPSLPEESTGPPDKPD*
Ga0126381_1028189051	3300010376	Tropical Forest Soil	YELAAVAAEGGFEPSELVVPGVPEESAEPPDRSD*
Ga0136449_1005050211	3300010379	Peatlands Soil	LGYELAAVAGEGGFEPGELVVPGVPEESTEPPDKPD*
Ga0134126_127470511	3300010396	Terrestrial Soil	GYELAAVAGEGGFEPSELVVPGVPEESTEPPDQPD*
Ga0126383_117684252	3300010398	Tropical Forest Soil	TPAAHESLGYELAAVAGEGGFEPGELVIPSVPEESTGPPDKPD*
Ga0126356_104271245	3300010877	Boreal Forest Soil	GYELAAAAGEGGFEPSPLVVPTSGEESAETSDSPD*
Ga0150983_154759351	3300011120	Forest Soil	LSEELAAVAGEGGFEPSELVVPGVPEESTGPPDKPR*
Ga0137382_105910331	3300012200	Vadose Zone Soil	HESLGYELAAVAGEGGFEPSELVVPGVPEESTEPPDQPD*
Ga0157331_10328881	3300012486	Soil	MGARRTHELAAVAAEGAFEPSELVVPDVPEPTTEPPGKPGKPG*
Ga0126369_136173182	3300012971	Tropical Forest Soil	ESLGYELAAVAAEGGFEPSELVVSDAPEESTQPPDKPGKPG*
Ga0157373_109881052	3300013100	Corn Rhizosphere	AREPLGYELAAVAGEGGFEPGELVVPCVPEESAGPPDKPD*
Ga0163163_123166541	3300014325	Switchgrass Rhizosphere	PEPLGAELAAVSAEGGFEPSELVITDAQDERTEPPG*
Ga0182024_108580462	3300014501	Permafrost	YELAAVAGEGGFEPSELVVPGVPEESTEPPDKPD*
Ga0182041_111247111	3300016294	Soil	LGYELAAVAGEGGFEPGELVVPGVPEESAEPPDQPD
Ga0182041_114781162	3300016294	Soil	HESLGYELAAVAGEGGFEPGELVIPSAPEESTGPPDQPD
Ga0182032_115868552	3300016357	Soil	SLGYELAAVAGEGGFEPGELVIPSAPEESTGPPDQPD
Ga0182040_118015871	3300016387	Soil	RTTVPAGPEALGYELAAVAGEGSFEPGELVVPSIPEENTGPPDQPD
Ga0182037_120480282	3300016404	Soil	LGYELAAVAGEGGFEPGELVVPSVPEESTGPPDQPD
Ga0187812_10196182	3300017821	Freshwater Sediment	PVPASRQSLGYELAAVAAEGGFEPTELVVPGAPEESTEPSDKPEK
Ga0187820_10059241	3300017924	Freshwater Sediment	GYELAAVAGEGGFEPSELVVPGVPEQSTELPEKPG
Ga0187806_10604432	3300017928	Freshwater Sediment	SLGYELAAVAAEGGFEPGEPVVPGVPEASTEPPDKPG
Ga0187806_11384821	3300017928	Freshwater Sediment	GRRTPVPAAREPLGYELAAVAGEGGFEPGELVVPGVPEESTEPPDKPG
Ga0187814_100361561	3300017932	Freshwater Sediment	AAREPLGYELAAVAGEGGFEPGELVVPGVPEESTEPPDKPD
Ga0187808_102636563	3300017942	Freshwater Sediment	GYELAAVAGEGGFEPSELVVPTGPEESTEPPDRPG
Ga0187808_104541251	3300017942	Freshwater Sediment	AAVAAEGGFEPAELVVPATPEPSTEPPDQPDQGRR
Ga0187817_110239412	3300017955	Freshwater Sediment	GYELAAVAAEGGFEPAELVVPATPEPSTEPPDQPD
Ga0187778_101011641	3300017961	Tropical Peatland	PAAHESLGYELAAVAGEGGFEPGELVVPSVPEESTGPPDKPD
Ga0187778_106994101	3300017961	Tropical Peatland	APAAHESLGYELAAVAGEGGFEPGELVVPGVPEESIRAPDQPD
Ga0187777_105630961	3300017974	Tropical Peatland	ESLGYELAAVAGEGGFEPGELVPGVPEESTGPPDQPD
Ga0187815_102457382	3300018001	Freshwater Sediment	AARESLGYELAAVAAEGGFEPAELVVPAAPEPSTEPPDQPD
Ga0187805_100569401	3300018007	Freshwater Sediment	PAAREPLGYELAAVAGEGGFEPSELVPGVPEESTEPPDRPD
Ga0187869_102629723	3300018030	Peatland	ESLGYELAAVAGEGVFEPTELVVPEESTEPPDQPG
Ga0187887_100318507	3300018043	Peatland	PVPAARESLGYELAAVAGEGVFEPTELVVPEESTEPPDQPG
Ga0187851_108524801	3300018046	Peatland	RESLGYELAAVAGEGGFEPSELVVPEESTEPPDQPD
Ga0187772_114543831	3300018085	Tropical Peatland	LAAVAGEGGFEPSELVIPDAAEEGTEPPGKPGPSG
Ga0187769_100709157	3300018086	Tropical Peatland	GRRTPAPAAHESLGFELAGVAGEGGFEPSELVVPGVPEQSTEPPHKPD
Ga0210399_105218311	3300020581	Soil	RTPAPAAHESLGYELAAVAGEGGFEPSELVVPGVPEESTEPPDKPD
Ga0210405_103697702	3300021171	Soil	AAHDSLGYELAAVAGEGGFEPSELVVPGVPEQSTEPPDNPG
Ga0210396_107752591	3300021180	Soil	PESLGSELAAVAAEGGFEPTELVVPNAAEESTTEQRDKAD
Ga0210396_109500722	3300021180	Soil	AVAAEGGFEPSELVVPDGVPDVSGEGAELPDKPPQPG
Ga0210388_100988514	3300021181	Soil	VAAEGGFEPSELVVPDGVPDVSGEGAELPDKPPQPG
Ga0210388_106340621	3300021181	Soil	PVDTAPQSLGYELAAVAAEGAFEPSELVVPGVPEESTEPPDQPG
Ga0210388_112234942	3300021181	Soil	SLGYELAAVAGEGGFEPSELVVPAAPEQSSEPPDKSG
Ga0210385_101790223	3300021402	Soil	GYELAAVSAEGGFEPSELVVPDAHEESGESPGNPVNPD
Ga0210383_117659801	3300021407	Soil	VPAAHESLGYELAAVAGEGGFEPSELVVPDVRGKSTEPPDKSD
Ga0210384_101521824	3300021432	Soil	TLAPAAPESLGYELAAVAGEGGFEPSGLVPDVREDATESPAKPAKPD
Ga0210384_109504882	3300021432	Soil	RTPAPAARESLGYELAAVAGEGGFEPGELVVPGGLEESTEPPDNPD
Ga0210384_112819141	3300021432	Soil	LGYELAAVAGEGGFEPSELVVPGVPEESTEPPDQPG
Ga0210398_1000480114	3300021477	Soil	LSEELAAVAGEGGFEPSELVVPGVPEESTGPPDKPR
Ga0210402_106447181	3300021478	Soil	APAAHESLGYELAAVAGEGGFEPSELVVPGVPEESTEPPDKPD
Ga0242678_10171131	3300022715	Soil	QSLGYELAAVAAEGAFEPSELVVPGVPEESTEPPDQPG
Ga0247692_10490771	3300024279	Soil	GYELAAVAGEGSFEPGELVVPSIPEESTGPPDKPD
Ga0207688_100709352	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	RRTPAPAAHESLGYELAAVAGEGSFEPGELVVPSIPEESTGPPDKPD
Ga0207707_109167712	3300025912	Corn Rhizosphere	AAHESLGYELAAVAGEGGFEPSELVVPGVPEESTEPPDKPD
Ga0207693_100815923	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RRTPAPAAHESLGYELAAVAGEGGFEPSELVVPGVPEESTEPPDQPD
Ga0207693_105407341	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	PAPAARESLGYELAAVAGEGSFEPGELVVPSAPEGSTEPPGKPG
Ga0207664_101611451	3300025929	Agricultural Soil	TPAPAGHESLGYELAAVAGEGGFEPSELVVPGVPEESTEPPDQPD
Ga0207664_112111351	3300025929	Agricultural Soil	GRRTPVPAARESLGYELAAVAGEGGFEPGELVPGIPEESTEPPDQPG
Ga0207664_116912072	3300025929	Agricultural Soil	RTPAPAAHESLGYELAAVAGEGGFEPSELVVPGVPEQGTEPPDQPD
Ga0207711_107964252	3300025941	Switchgrass Rhizosphere	RRTLVPAAREPLGYELAAVAGEGSFEPGELVVPSIPEESTGPPDKPD
Ga0209007_11030491	3300027652	Forest Soil	EPLGYDLAAVAGEGAFEPSELVVPDVPEESAESPDKPGKPD
Ga0209655_102847712	3300027767	Bog Forest Soil	PVPAAHESLGYELAAVAGEGGFEPSELVVPDVRGKSTEPPDKPD
Ga0209274_104295471	3300027853	Soil	HESLGYELAAVAGEGGFEPSELVIPDESTEPPDTPS
Ga0209380_100760111	3300027889	Soil	VPDSVGYELAAVAAEGSFEPSELVVPDVPGDGAERPDKPPEPD
Ga0302225_103426102	3300028780	Palsa	GRRTPVPATREPLGYELAAVAGEGGFEPSELVVPEESTEPPEKPG
Ga0302221_101703691	3300028806	Palsa	RRTPAPANRESLGYELAAVAGEGGFEPSELVVPGAPEESTDPPDQPG
Ga0302229_103264321	3300028879	Palsa	PAAHQSLGYELAAVAGEGGFEPSELVVPRAPEESTEPPDQPG
Ga0311355_103078421	3300030580	Palsa	LAAVAGEGTFEPSELVVPEVAESVVESTTEVADKPGITG
Ga0311356_101853533	3300030617	Palsa	PVPATREPLGYELAAVAGEGGFEPSELVVPEESTEPPDKPG
Ga0302307_101776341	3300031233	Palsa	RESLGYELAAVAGEGGFEPSELVVPEESTEPPDKPG
Ga0170818_1030384022	3300031474	Forest Soil	LLLLPAPESLGYELAAVAGEGGFEPSELVVPSATESGSG
Ga0302326_110628163	3300031525	Palsa	TPVPATREPLGYELAAVAGEGGFEPSELVVPEESTEPPDKPG
Ga0318541_105576801	3300031545	Soil	VPAGPEALGYELAAVAGEGGFEPGELVVPSIPEENTGPPDQPD
Ga0318528_103346512	3300031561	Soil	VGYELAAVAGEGGFEPGELVLPGVPEESTEPPDKPD
Ga0318515_106359502	3300031572	Soil	RESLGYELAAVAGEGGFEPSELVVPGVPDESPQPPDQPD
Ga0318574_107574301	3300031680	Soil	SLGYELAAVAGEGGFEPGELVVPSVPEESTEPPDEPD
Ga0318572_104783011	3300031681	Soil	AARESLGYELAAVAGEGGFEPGELVVPSVPDESSGPPDQPD
Ga0318572_106355522	3300031681	Soil	GPRKQAPAAPESLGYELAAVAGEGSFEPGELVVPSAPEESTGPPDQPD
Ga0310686_1033637651	3300031708	Soil	RESLGYELAAVAGEGGFEPSELVVSDVPEKSIEPPDKPG
Ga0318493_100558043	3300031723	Soil	PAPAAHESLGYELAAVAGEGGFEPGELVVPSVPEESTGPPDQPD
Ga0318493_103318302	3300031723	Soil	YELAAVAAEGGFEPSGLVVPDGPQGSTEPPDKPGKP
Ga0306918_102297011	3300031744	Soil	RRTPAPAAHESLGYELAAVAGEGGFEPGELVVPSVPEESTGPPDQPD
Ga0318502_101997623	3300031747	Soil	GYELAAVAGEGGFEPGELVVPSIPEENTGPPDQPD
Ga0318502_106514312	3300031747	Soil	RTPAPAAHESLGYELAAVAGEGGFEPGELVVPSVPEESTGPPDQPD
Ga0318566_104940932	3300031779	Soil	PTPAGHESLGYELAAVAGEGGFEPGELVIPSAPEESTGPPDQPD
Ga0318529_101807611	3300031792	Soil	RARAPAAHESLGYELAAVAGEGSFEPSELVVPGVPEESTGPSDHPD
Ga0306925_106369721	3300031890	Soil	GPRTPAPAAHEALGYELAAVAGEGGFEPNELVVPSVPDQSTGPPDQPD
Ga0306921_127599251	3300031912	Soil	AHESLGYELAAVAGEGSFEPSELVVPGVPEESTGPSDHPD
Ga0310916_105342531	3300031942	Soil	TPAPAAHESLGYELAAVAGEGGFEPGELVVPSVPEESTGPPDQPD
Ga0310916_113954342	3300031942	Soil	PEALGYELAAVAGEGGFEPGELVVPSIPEENTGPPDQPD
Ga0318504_106313961	3300032063	Soil	TAAHESVGYELAAVAGEGGFEPGELVVPSVPEESTGPPDQPD
Ga0318510_100145873	3300032064	Soil	ESLGYELAAVAGEGGFEPGELVVPSVPEESTGPPDQPD
Ga0306924_123830781	3300032076	Soil	RAPAPAARESLGYELAAVAAEGGFEPSGLVVPDGPEGSTEPPDKPGKP
Ga0307470_110676811	3300032174	Hardwood Forest Soil	LGYELAAVAGEGGFEPSELVVPGVPEESTEPPDKPD
Ga0306920_1014379141	3300032261	Soil	TTVPAGPEALGYELAAVAGEGSFEPGELVVPSIPEENTGPPDQPD
Ga0335085_118856181	3300032770	Soil	GRRTPAPAAHESLGYELAAVAGEGAFEPGELVVPGVPEESTGPSDQPD
Ga0335085_119285971	3300032770	Soil	RRTPAPAAHESLGYELAAVAGEGGFEPGELVVPSIPEDSAEPPDKPD
Ga0335078_108056124	3300032805	Soil	ARESLGYELAAVAGEGSFEPGELVVPAVQEESTEPPDKPI
Ga0335078_127061412	3300032805	Soil	RRTPAPAAHESLGYELAAVAGEGGFEPGELVVPSVPEESTGTPDTPD
Ga0335080_108019653	3300032828	Soil	TPAPAVRESLGYELAAVAGEGGFEPGELVLPGVPEESTEPPDKPD
Ga0335080_118789662	3300032828	Soil	PAPATRESLGYELAAVAGEGGFEPGELVVPAVPDQSTGPPDKPD
Ga0335075_100709236	3300032896	Soil	LGYELAAVTAEGGFEPAELIVPGIPEQSTEPPDKPD
Ga0335075_114393281	3300032896	Soil	PLGYELAAVAAEGSFEPSELVIPVTEAVAQEESTESPPDQPAKPG
Ga0335072_106704251	3300032898	Soil	LGYELAAAAAEGGFEPSGIVVPSGQEDSPEAAEQSE
Ga0335073_114417971	3300033134	Soil	APAGESLGYELAAAAAEGGFEPTGLVVPAAPDEGAEPADHVE
Ga0335073_119990782	3300033134	Soil	QSLGYELAAVASEGGFEPSELVVPGIPEESTEQPDKPG
Ga0335077_105438561	3300033158	Soil	GSLGYELAAVAGEGGFEPGELVVPGVPEESTAPPDQPD
Ga0318519_106367521	3300033290	Soil	GYELAAVAGEGGFEPGELVIPSAPEESTGPPDQPD
Ga0372943_0741175_511_648	3300034268	Soil	RTKVPAARESLGYELAAVAGEGGFEPGELVPGIPEESTEPPDQPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055067

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences