Metagenome / Metatranscriptome Family F054924

Basic Information
Family ID	F054924
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	54 residues
Representative Sequence	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Number of Associated Samples	110
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.06 %
% of genes near scaffold ends (potentially truncated)	38.13 %
% of genes from short scaffolds (< 2000 bps)	82.73 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (73.381 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (33.093 % of family members)
Environment Ontology (ENVO)	Unclassified (54.676 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (97.842 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1BB_Man_B_Liq_inBBDRAFT_10224712 2BB_Man_B_Liq_inBBDRAFT_10414901 3BB_Man_A_Liq_inBBDRAFT_10067992 4ACM22_10046273 5GOS2251_10194273 6GOS2238_10424053 7GOS2237_10217144 8GOS2237_10280231 9GOS2266_10006654 10GOS2243_10418793 11GOS2243_10426561 12GOS2245_11133751 13GOS2242_10505595 14GOScombined01_1013783915 15GOScombined01_1028632803 16JGI26064J46334_10672312 17Ga0063241_10176865 18Ga0068514_10136152 19Ga0070431_11246542 20Ga0072505_14579401 21Ga0066845_100718903 22Ga0066825_101387361 23Ga0066825_104029642 24Ga0066861_100792293 25Ga0066835_100232782 26Ga0066377_101228342 27Ga0066377_101380521 28Ga0066377_102013152 29Ga0066364_100374263 30Ga0075478_101489122 31Ga0075462_100692301 32Ga0075462_100746163 33Ga0068495_16875601 34Ga0075514_10421062 35Ga0075514_10550693 36Ga0075510_109548041 37Ga0075486_18446472 38Ga0101668_10368572 39Ga0101670_10615262 40Ga0105011_10795743 41Ga0075480_100535434 42Ga0111541_101199572 43Ga0118730_11126932 44Ga0123364_10501361 45Ga0115012_100505301 46Ga0129351_10414113 47Ga0129351_11233163 48Ga0123365_10434231 49Ga0129353_15067632 50Ga0129352_103497431 51Ga0160422_106215002 52Ga0160423_102053561 53Ga0160423_102222331 54Ga0160423_102369762 55Ga0160423_103316951 56Ga0163109_104516701 57Ga0163109_105712162 58Ga0163111_101672692 59Ga0116834_10693711 60Ga0116814_10289901 61Ga0182083_14385522 62Ga0182078_109024933 63Ga0182072_10737701 64Ga0182072_11854551 65Ga0182080_11454302 66Ga0181565_102277023 67Ga0181565_102547952 68Ga0181552_100226132 69Ga0181552_102974812 70Ga0181584_100360963 71Ga0181584_105476011 72Ga0181577_105151561 73Ga0181580_103274042 74Ga0181571_107139442 75Ga0181582_101036011 76Ga0181581_100813473 77Ga0181581_106253162 78Ga0181589_103089752 79Ga0181590_101003214 80Ga0181590_101302904 81Ga0181576_103772161 82Ga0181576_108368071 83Ga0181579_103665501 84Ga0181572_102611141 85Ga0181572_106417342 86Ga0181567_106413331 87Ga0181567_108814651 88Ga0181592_102703542 89Ga0181592_106680481 90Ga0181591_104403941 91Ga0181568_101808573 92Ga0181568_104808301 93Ga0181568_108704922 94Ga0182065_12210001 95Ga0182059_15853311 96Ga0181594_103375732 97Ga0211501_10038714 98Ga0211501_10274733 99Ga0211529_10170993 100Ga0211648_10535632 101Ga0211484_10546691 102Ga0211606_10282212 103Ga0211482_10045521 104Ga0211471_10432502 105Ga0211490_10484751 106Ga0211595_10190502 107Ga0211485_10064065 108Ga0211507_10672442 109Ga0211706_11081422 110Ga0211488_100205981 111Ga0211500_10160525 112Ga0211500_10326103 113Ga0211647_102112362 114Ga0211498_103047772 115Ga0211618_101333072 116Ga0211659_100035919 117Ga0211556_104945112 118Ga0211539_100215781 119Ga0211486_100393333 120Ga0211713_100202973 121Ga0211503_101107161 122Ga0213859_100101754 123Ga0255754_101527483 124Ga0255778_102800761 125Ga0255784_103158242 126Ga0255743_103993772 127Ga0255751_105893312 128Ga0255761_101651752 129Ga0255761_103351972 130Ga0255766_104763481 131Ga0255776_101249413 132Ga0255777_104592653 133Ga0208427_12544863 134Ga0208878_10208693 135Ga0208127_10327312 136Ga0207993_10325442 137Ga0208277_12331212 138Ga0209036_11708052 139Ga0310343_100995762
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1BB_Man_B_Liq_inBBDRAFT_10224712 2BB_Man_B_Liq_inBBDRAFT_10414901 3GOS2251_10194273 4GOS2266_10006654 5JGI26064J46334_10672312 6Ga0066845_100718903 7Ga0066377_101380521 8Ga0075478_101489122 9Ga0075462_100746163 10Ga0075480_100535434 11Ga0208277_12331212
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1BB_Man_B_Liq_inBBDRAFT_10224712 2BB_Man_B_Liq_inBBDRAFT_10414901 3GOS2251_10194273 4GOS2266_10006654 5JGI26064J46334_10672312 6Ga0066845_100718903 7Ga0066377_101380521 8Ga0075478_101489122 9Ga0075462_100746163 10Ga0075480_100535434 11Ga0208277_12331212
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 80.00% β-sheet: 0.00% Coil/Unstructured: 20.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF01292	Ni_hydr_CYTB	25.18
PF16491	Peptidase_M48_N	17.99
PF00033	Cytochrome_B	12.95
PF01255	Prenyltransf	12.95
PF00557	Peptidase_M24	2.88
PF09851	SHOCT	1.44
PF01435	Peptidase_M48	1.44
PF02012	BNR	0.72
PF00756	Esterase	0.72
PF15902	Sortilin-Vps10	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	25.18
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	25.18
COG3038	Cytochrome b561	Energy production and conversion [C]	25.18
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	25.18
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	25.18
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	12.95
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	12.95
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	0.72
COG2314	Uncharacterized membrane protein YozV, TM2 domain, contains pTyr	General function prediction only [R]	0.72

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.38 %
Unclassified	root	N/A	26.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.38 %
Unclassified	root	N/A	26.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.38 %
Unclassified	root	N/A	26.62 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.16 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.91 %
Unclassified	root	N/A	26.62 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.44 %
Unclassified	root	N/A	26.62 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.44 %
Unclassified	root	N/A	26.62 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis	0.72 %
Unclassified	root	N/A	26.62 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.04 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.04 %
SAR324 cluster	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster	0.72 %
Unclassified	root	N/A	26.62 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000401\|BB_Man_B_Liq_inBBDRAFT_1022471	Not Available	762	Open in IMG/M
3300000401\|BB_Man_B_Liq_inBBDRAFT_1041490	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300000422\|BB_Man_A_Liq_inBBDRAFT_1006799	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300001846\|ACM22_1004627	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300001944\|GOS2251_1019427	All Organisms → cellular organisms → Bacteria	2532	Open in IMG/M
3300001949\|GOS2238_1042405	All Organisms → cellular organisms → Bacteria	2737	Open in IMG/M
3300001955\|GOS2237_1021714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2060	Open in IMG/M
3300001955\|GOS2237_1028023	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300001956\|GOS2266_1000665	All Organisms → cellular organisms → Bacteria → Proteobacteria	6109	Open in IMG/M
3300001965\|GOS2243_1041879	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.56%
Host-Associated	Host-Associated	1.44%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.56%
Porifera	Host-Associated → Porifera	1.44%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	96.40%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.16%
Unclassified	Host-Associated → Porifera → Unclassified	1.44%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	12.23%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	39.57%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.72%
Oceanic	Environmental → Aquatic → Marine → Oceanic	23.74%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified	18.70%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified	1.44%
Unclassified	Host-Associated → Porifera → Unclassified → Unclassified	1.44%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.44%

Habitat	Taxonomy	Distribution
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	6.47%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	33.09%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	18.70%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	17.27%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	12.23%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	6.47%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.44%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified	1.44%
Unclassified	Host-Associated → Porifera → Unclassified → Unclassified → Unclassified	1.44%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	7.91%
Bioluminescent Bay	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay	1.44%
Bioluminescent Bay	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Bioluminescent Bay	0.72%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.44%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	18.70%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	15.83%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	6.47%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.44%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.72%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.72%
Marine Benthic Sponge Stylissa Massa Associated	Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated	1.44%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.72%
Marine Water	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water	0.72%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	33.09%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.72%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.72%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.72%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	5.04%
Volcanic Co2 Seep	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep	0.72%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.72%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000401	Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid	Environmental	Open in IMG/M
3300000422	Marine sediment microbial community from La Parguera, Puerto Rico - BB Mangrove A Sediment	Environmental	Open in IMG/M
3300001846	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b	Environmental	Open in IMG/M
3300001944	Marine microbial communities from Cabo Marshall, Isabella Island, Equador - GS036	Environmental	Open in IMG/M
3300001949	Marine microbial communities from Panama City, Panama - GS022	Environmental	Open in IMG/M
3300001955	Marine microbial communities from Gulf of Panama, Panama - GS021	Environmental	Open in IMG/M
3300001956	Marine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051	Environmental	Open in IMG/M
3300001965	Marine microbial communities from Coastal Floreana, Equador - GS028	Environmental	Open in IMG/M
3300001966	Marine microbial communities from Roca Redonda, Equador - GS030	Environmental	Open in IMG/M
3300001967	Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027	Environmental	Open in IMG/M

Showing 1 to 10 of 110 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BB_Man_B_Liq_inBBDRAFT_10224712	3300000401	Bioluminescent Bay	MISLKLIRRIQTVKTVEVKIRRIPGMXISLLLLYXTAVVSIFFLKVAFFFAAIGVVFKSFSNK*
BB_Man_B_Liq_inBBDRAFT_10414901	3300000401	Bioluminescent Bay	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFF
BB_Man_A_Liq_inBBDRAFT_10067992	3300000422	Bioluminescent Bay	MISLRLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK*
ACM22_10046273	3300001846	Marine Plankton	MISLKLIERIKAVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK*
GOS2251_10194273	3300001944	Marine	VKTAEIKARRNPRIIISLLFLYLTAVVSIFVLKFAFFFAAVAVIFKSLTK*
GOS2238_10424053	3300001949	Marine	VKTAEIKARRNPGIIISLLLLYLTAVVSIFVLKFAFFFAAVAVIFKSLTK*
GOS2237_10217144	3300001955	Marine	MIGFKLIERIKAVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKAAFFFAAIGVIFKSFTK*
GOS2237_10280231	3300001955	Marine	MKTIEVKTRRIPGMIISLLLLYLTAAVSIFVLKVAFV
GOS2266_10006654	3300001956	Marine	VKTVELKIRRIPGMIISLLLLYLTAVVSIIFLKVAFFFAAIGVVFKSFSNK*
GOS2243_10418793	3300001965	Marine	MISLKLIKRIKVVKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGFIFKSLTK*
GOS2243_10426561	3300001965	Marine	VKTVEIKVRRIPGIIISLLLLYLTSVVSIFVLKVAFFFAAVAVIFKSLTK*
GOS2245_11133751	3300001966	Marine	IKARRNPGIIISLLFLYLTAVVSIFVLKFAFFFAAVAVIFKSLTK*
GOS2242_10505595	3300001967	Marine	VKTVEVKVKRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK*
GOScombined01_1013783915	3300002040	Marine	MISLRLIRRIHTVKTVELKIRRIPGMIISLLLLYLTAVVSIIFLKVAFFFAAIGVVFKSFSNK*
GOScombined01_1028632803	3300002040	Marine	VKTAEIKARRNPGIIISLLFLYLTAVVSIFVLKFAFFFAAVAVIFKSLTK*
JGI26064J46334_10672312	3300003185	Marine	LKLIKRIKVVKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK*
Ga0063241_10176865	3300003894	Marine	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK*
Ga0068514_10136152	3300004941	Marine Water	MISLKLIKRIKVVKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK*
Ga0070431_11246542	3300005074	Marine Benthic Sponge Stylissa Massa Associated	MISLKLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK*
Ga0072505_14579401	3300005097	Marine Benthic Sponge Stylissa Massa Associated	MISLKLIERIKAVKTVEVKIRRVPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK*
Ga0066845_100718903	3300005432	Marine	MKTIEVKTRRIPGMIISLLLLYLTAAVSIFVLKVAFVLAAVAVIFKSFSNQK*
Ga0066825_101387361	3300005510	Marine	MISLKLIKRIKVVKTVEVKTRKIPGIIISLLLLYLTAVVSVFVLKVAFFFAAIGVIFKSLTK*
Ga0066825_104029642	3300005510	Marine	VKTVEVKTRKIPGIIVSLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK*
Ga0066861_100792293	3300005522	Marine	MIGFKLIERIKAVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK*
Ga0066835_100232782	3300005606	Marine	VKTVEVKVRRNPGIIISLLFLYLTAVVSIFVLKVAFFFAAVAVIFKSLTK*
Ga0066377_101228342	3300005934	Marine	RIKAVKTVEIKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK*
Ga0066377_101380521	3300005934	Marine	MIGFKLIERIKAVKTVEVKIRRIPGMIISLLLLYLTAAVSIFVLKVAFVLAAV
Ga0066377_102013152	3300005934	Marine	VKTAEIKARRNPGIIISLLFLYLTAVVSIFVLKVAFFFAAVAVIFKSLTK*
Ga0066364_100374263	3300005960	Marine	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK*
Ga0075478_101489122	3300006026	Aqueous	MERIQTVKTVEVKIGRIPGIIISLLFLYLTALVSMFVLKVAFFLAAVVVVLKSFSNRK*
Ga0075462_100692301	3300006027	Aqueous	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSSN*
Ga0075462_100746163	3300006027	Aqueous	VKTVEVKIGRIPGIIISLLFLYLTALVSMFVLKVAFFLAAVV
Ga0068495_16875601	3300006337	Marine	VKTVEVKVRRSPGIIISLLLLYLTAVVSIFVLKVAFFFAAVAVIFKSLTK*
Ga0075514_10421062	3300006403	Aqueous	VKTVEVKIRRIPGMVISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK*
Ga0075514_10550693	3300006403	Aqueous	MISLKLIRKIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK*
Ga0075510_109548041	3300006405	Aqueous	VKTVEVKIGRIPGIIISLLFLYLTALVSMFVLKVAFFLAAVVVVLK
Ga0075486_18446472	3300006425	Aqueous	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFS
Ga0101668_10368572	3300007114	Volcanic Co2 Seep Seawater	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK*
Ga0101670_10615262	3300007144	Volcanic Co2 Seep	MIGFKLIERIKAVKTVEVKTRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK*
Ga0105011_10795743	3300007508	Marine	VKTVEVKIGRIPGIIISLLFLYLTAAVSIFVLKVAFVLAAAVVVFKSFSNQN*
Ga0075480_100535434	3300008012	Aqueous	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGLFLNR*
Ga0111541_101199572	3300008097	Marine	VKTVEVKVRRSPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK*
Ga0118730_11126932	3300009132	Marine	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK*
Ga0123364_10501361	3300009754	Marine	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIG
Ga0115012_100505301	3300009790	Marine	MKTVEVKIGRIPGIIISLLFLYLTALVSMFVLKVAFFLAAVVVVLKS
Ga0129351_10414113	3300010300	Freshwater To Marine Saline Gradient	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIRVIFKSFTK*
Ga0129351_11233163	3300010300	Freshwater To Marine Saline Gradient	QTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK*
Ga0123365_10434231	3300012394	Marine	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIG
Ga0129353_15067632	3300012525	Aqueous	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFESFTK*
Ga0129352_103497431	3300012528	Aqueous	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAI
Ga0160422_106215002	3300012919	Seawater	VKTVEVKARRNPGIIISLLFLYLTAVVSIFVLKVAFFLAAVAVIFKSLTK*
Ga0160423_102053561	3300012920	Surface Seawater	VKTAEIKARRNPGIITSLLFLYLTAVVSIFVLKFAFFFAAVAVIFKSLTK*
Ga0160423_102222331	3300012920	Surface Seawater	VKTVEIKVRRIPGIIISLLLLYLTSVVSIFVLKVAFFFAA
Ga0160423_102369762	3300012920	Surface Seawater	MKTIEVKTRRIPGIIISLLLLYLTAAVSIFVLKVAFVLAAVAVIFKSFSNQK*
Ga0160423_103316951	3300012920	Surface Seawater	TVKTVEIKVRRIPGIIISLLLLYLTSVVSIFVLKVAFFFAAIGVIFQSLTK*
Ga0163109_104516701	3300012936	Surface Seawater	AVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK*
Ga0163109_105712162	3300012936	Surface Seawater	VKTVEIKVRRTPGIIISLLLLYLTVVVSIFVLKVAFFFAAIGVIFKSLTK*
Ga0163111_101672692	3300012954	Surface Seawater	VKTVEIKVRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK*
Ga0116834_10693711	3300013188	Marine	SLKLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSSN*
Ga0116814_10289901	3300013230	Marine	MISFKLIERIKAVKTVEVKIGRIPGMIISLLFLYLSAAVSIFVLKVAFVLAAVVVVFKSFSNQK*
Ga0182083_14385522	3300016743	Salt Marsh	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVVFFFAAIGVVFKSFSSN
Ga0182078_109024933	3300016747	Salt Marsh	QTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFTAIGIVFKSFSNN
Ga0182072_10737701	3300016754	Salt Marsh	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSS
Ga0182072_11854551	3300016754	Salt Marsh	KLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSSN
Ga0182080_11454302	3300016787	Salt Marsh	MISLKLIRKIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNKY
Ga0181565_102277023	3300017818	Salt Marsh	IQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0181565_102547952	3300017818	Salt Marsh	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTN
Ga0181552_100226132	3300017824	Salt Marsh	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNN
Ga0181552_102974812	3300017824	Salt Marsh	MISLKLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSSN
Ga0181584_100360963	3300017949	Salt Marsh	MIGFKLIERIKAVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Ga0181584_105476011	3300017949	Salt Marsh	LIQMISLRLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFVAIGVVFKSFSNK
Ga0181577_105151561	3300017951	Salt Marsh	MISLKLIRRIQTVKTVEVKIRRIPGMVISLLLLYLTAVVSIFFLKVAFFFA
Ga0181580_103274042	3300017956	Salt Marsh	MISLKLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0181571_107139442	3300017957	Salt Marsh	LIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFVAIGVVFKSFSNK
Ga0181582_101036011	3300017958	Salt Marsh	ISLKLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNN
Ga0181581_100813473	3300017962	Salt Marsh	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIWVIFKSFTK
Ga0181581_106253162	3300017962	Salt Marsh	ISLKLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFLLKVAFFFAAIGVVFKSFSNK
Ga0181589_103089752	3300017964	Salt Marsh	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFVAIGVVFKSFSNK
Ga0181590_101003214	3300017967	Salt Marsh	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Ga0181590_101302904	3300017967	Salt Marsh	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSN
Ga0181576_103772161	3300017985	Salt Marsh	QTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFLK
Ga0181576_108368071	3300017985	Salt Marsh	LKLIRKIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0181579_103665501	3300018039	Salt Marsh	MISLKLIKRIKVVKTVEVKTRKIPGIIISLLLLYLTAIVSIFVLKVTFFFAAIGVIFKSLTK
Ga0181572_102611141	3300018049	Salt Marsh	TVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFVAIGVVFKSFSNK
Ga0181572_106417342	3300018049	Salt Marsh	MISLKLIRKIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0181567_106413331	3300018418	Salt Marsh	VKIRRIPGMIISLLLLYLTAVVSMFFLKVAFFFAAIGVVFKSFLK
Ga0181567_108814651	3300018418	Salt Marsh	ILIRMISLKLIRRIQTVKTVEVKIRRIPGMVISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0181592_102703542	3300018421	Salt Marsh	VKTVEVKSRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFLK
Ga0181592_106680481	3300018421	Salt Marsh	ISLRLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFVAIGVVFKSFSNK
Ga0181591_104403941	3300018424	Salt Marsh	LIQMISLRLIRRIQTVKTVEVKIRRIPGMIISLLILYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0181568_101808573	3300018428	Salt Marsh	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFLAAIGVVFKTFLK
Ga0181568_104808301	3300018428	Salt Marsh	KRIKVVKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK
Ga0181568_108704922	3300018428	Salt Marsh	MIGFKLIERIKSVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Ga0182065_12210001	3300019271	Salt Marsh	QTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSSN
Ga0182059_15853311	3300019272	Salt Marsh	RMISLKLIRRIQTVKTVEVKIRRIPGIIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSSN
Ga0181594_103375732	3300020054	Salt Marsh	MISLRLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSSN
Ga0211501_10038714	3300020239	Marine	MKTIEVKTRRIPGMIISLLLLYLTAAVSIFVLKVAFVLAAVAVIFKSFSNQK
Ga0211501_10274733	3300020239	Marine	MMSLKLIRRIQTVKTVEVRIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVIFKSFTK
Ga0211529_10170993	3300020258	Marine	VKTVEVKVRRNPGIIISLLFLYLTAVVSIFVLKVAFFFAAVAVIFKSLTK
Ga0211648_10535632	3300020267	Marine	VKTAEIKARRNPGIIISLLFLYLTAVVSIFVLKFAFFFAAVAVIFKSLTK
Ga0211484_10546691	3300020269	Marine	KLIERIKAVKTVEVKIRKMPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Ga0211606_10282212	3300020278	Marine	VKTVEVKVRRIPGIIISLLFLYLTAVVSIFVLKVAFFFAAVAVIFKSLTK
Ga0211482_10045521	3300020283	Marine	ISLKLIKRIKVVKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLT
Ga0211471_10432502	3300020287	Marine	LMIGFKLIERIKAVKTVEVKIRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Ga0211490_10484751	3300020297	Marine	FKLIERIKAVKTVEVKIRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVILKSFTK
Ga0211595_10190502	3300020302	Marine	VEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Ga0211485_10064065	3300020313	Marine	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Ga0211507_10672442	3300020325	Marine	MISLKLIKRIKVVKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK
Ga0211706_11081422	3300020345	Marine	VKTAEIKARRNPGIIISLLFLYLTAVVSIFVLKVGFFFAAVAVIFKSLTK
Ga0211488_100205981	3300020362	Marine	VEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0211500_10160525	3300020371	Marine	MIGFKLIERIKAVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0211500_10326103	3300020371	Marine	VKTVEVRIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVIFKSFTK
Ga0211647_102112362	3300020377	Marine	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKFAFFFAAVAVIFKSLTK
Ga0211498_103047772	3300020380	Marine	MISLRLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0211618_101333072	3300020393	Marine	MIGFKLIERIKAVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVILKSFTK
Ga0211659_100035919	3300020404	Marine	MERKQTVKTVEIKVRRIPGIIISLLLLYLTSVVSIFVLKVAFFFAAIGVIFKSLTK
Ga0211556_104945112	3300020432	Marine	MIGFKLIESIKAVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVILKSFTK
Ga0211539_100215781	3300020437	Marine	ILMIGFKLIERIKAVKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVILKSFTK
Ga0211486_100393333	3300020460	Marine	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTR
Ga0211713_100202973	3300020467	Marine	VKTVEVKVRRSPGIIISLLLLYLTAVVSIFVLKVAFFFATIAVIFKSLTK
Ga0211503_101107161	3300020478	Marine	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGV
Ga0213859_100101754	3300021364	Seawater	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSSN
Ga0255754_101527483	3300022939	Salt Marsh	VKTVEVKIRRIPGMVISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0255778_102800761	3300023084	Salt Marsh	MISLKLIRKIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSF
Ga0255784_103158242	3300023108	Salt Marsh	LIQMISLRLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFVAIGVVFKSFSNKY
Ga0255743_103993772	3300023110	Salt Marsh	VKTVEVKIRRIPGMFISLLLLYLTAVVSVFFLKVAFFFAAIGVVFKSFLK
Ga0255751_105893312	3300023116	Salt Marsh	MISLRLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFLLKVAFFFAAIGVVFKSFSNK
Ga0255761_101651752	3300023170	Salt Marsh	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFLK
Ga0255761_103351972	3300023170	Salt Marsh	MILLKLIRKIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFLK
Ga0255766_104763481	3300023172	Salt Marsh	MILLKLIRKIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAA
Ga0255776_101249413	3300023173	Salt Marsh	VKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGIIFKSLTK
Ga0255777_104592653	3300023175	Salt Marsh	VKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAA
Ga0208427_12544863	3300025771	Aqueous	ILTPMISLKLIRKIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK
Ga0208878_10208693	3300026083	Marine	VKTAEIKARRNPGIIISLLFLYLTAVVSIFVLKVAFFFAAVAVIFKSLTK
Ga0208127_10327312	3300026201	Marine	VKTVEVKTRKIPGIIVSLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK
Ga0207993_10325442	3300026270	Marine	MKTIEVKTRRIPGMIISLLLLYLTAAVSIFVLKVAFLLAAVAVIFKSFSNQK
Ga0208277_12331212	3300026292	Marine	MKTIDVKIRRIPGILITLLFLYLTAAVSVLVLKVAFF
Ga0209036_11708052	3300027702	Marine	MISLKLTRRIQTVKTVEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSLTK
Ga0310343_100995762	3300031785	Seawater	VKTVEVKIRRIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVILKSFTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054924

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences