Metagenome / Metatranscriptome Family F054262

Basic Information
Family ID	F054262
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	42 residues
Representative Sequence	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDG
Number of Associated Samples	129
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.10 %
% of genes near scaffold ends (potentially truncated)	97.14 %
% of genes from short scaffolds (< 2000 bps)	94.29 %
Associated GOLD sequencing projects	125
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Most Common Taxonomy
Group	Bacteria (87.857 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.857 % of family members)
Environment Ontology (ENVO)	Unclassified (20.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.143 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.90% β-sheet: 8.96% Coil/Unstructured: 70.15%
Feature Viewer

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Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF00496	SBP_bac_5	29.29
PF08240	ADH_N	7.14
PF01408	GFO_IDH_MocA	2.14
PF02614	UxaC	1.43
PF05988	DUF899	1.43
PF02894	GFO_IDH_MocA_C	1.43
PF01385	OrfB_IS605	1.43
PF08352	oligo_HPY	1.43
PF08044	DUF1707	0.71
PF12708	Pectate_lyase_3	0.71
PF00378	ECH_1	0.71
PF01243	Putative_PNPOx	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG0673	Predicted dehydrogenase	General function prediction only [R]	1.43
COG0675	Transposase	Mobilome: prophages, transposons [X]	1.43
COG1904	Glucuronate isomerase	Carbohydrate transport and metabolism [G]	1.43
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	1.43

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.86 %
Unclassified	root	N/A	12.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.86 %
Unclassified	root	N/A	12.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.86 %
Unclassified	root	N/A	12.14 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	65.00 %
Unclassified	root	N/A	12.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.71 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.71 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.71 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.57 %
Unclassified	root	N/A	12.14 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.43 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.71 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.14 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.14 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	2.14 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.14 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.57 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2.14 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.43 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.71 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.14 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	3.57 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	2.14 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.43 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.71 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.14 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	3.57 %
Acidithrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix	1.43 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.43 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.71 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.14 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.57 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1.43 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.43 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	0.71 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.14 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.57 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1.43 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.43 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	0.71 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573003\|GZIR7W402HJ56M	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300002245\|JGIcombinedJ26739_100208435	All Organisms → cellular organisms → Bacteria	1847	Open in IMG/M
3300002245\|JGIcombinedJ26739_100314169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1450	Open in IMG/M
3300004091\|Ga0062387_100689999	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300004476\|Ga0068966_1393831	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300005332\|Ga0066388_104507229	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300005434\|Ga0070709_11418102	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300005435\|Ga0070714_100937116	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300005435\|Ga0070714_102372377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	516	Open in IMG/M
3300005436\|Ga0070713_101088007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	772	Open in IMG/M
3300005439\|Ga0070711_101986133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	511	Open in IMG/M
3300005440\|Ga0070705_100393342	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300005456\|Ga0070678_102212704	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005548\|Ga0070665_100528423	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300005548\|Ga0070665_101679723	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300005560\|Ga0066670_10827708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300005577\|Ga0068857_101620983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300005587\|Ga0066654_10650572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	587	Open in IMG/M
3300005602\|Ga0070762_10367822	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300005610\|Ga0070763_10198390	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300005614\|Ga0068856_101454304	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300005712\|Ga0070764_10412333	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005764\|Ga0066903_107249993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	574	Open in IMG/M
3300006173\|Ga0070716_101415288	Not Available	566	Open in IMG/M
3300006174\|Ga0075014_101027912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300006237\|Ga0097621_102029484	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300006576\|Ga0074047_11877854	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006606\|Ga0074062_10003974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1099	Open in IMG/M
3300006804\|Ga0079221_10463729	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300006854\|Ga0075425_101814357	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300006904\|Ga0075424_100818633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993	Open in IMG/M
3300009698\|Ga0116216_10293324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	991	Open in IMG/M
3300010339\|Ga0074046_10705416	Not Available	592	Open in IMG/M
3300010360\|Ga0126372_12365018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300010371\|Ga0134125_11480266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300010373\|Ga0134128_11653123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300010375\|Ga0105239_10926687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1000	Open in IMG/M
3300010376\|Ga0126381_100805831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1348	Open in IMG/M
3300010379\|Ga0136449_101179497	Not Available	1209	Open in IMG/M
3300010396\|Ga0134126_10848321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1030	Open in IMG/M
3300010398\|Ga0126383_11464615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300010880\|Ga0126350_11350233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	823	Open in IMG/M
3300011078\|Ga0138565_1027163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	791	Open in IMG/M
3300011120\|Ga0150983_11713510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1135	Open in IMG/M
3300012469\|Ga0150984_100546702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300012480\|Ga0157346_1005005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	806	Open in IMG/M
3300012492\|Ga0157335_1031401	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300012499\|Ga0157350_1003584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1028	Open in IMG/M
3300012507\|Ga0157342_1010534	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300012958\|Ga0164299_10903638	Not Available	641	Open in IMG/M
3300013104\|Ga0157370_10691317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	931	Open in IMG/M
3300013308\|Ga0157375_11420488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	818	Open in IMG/M
3300017822\|Ga0187802_10328516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300017933\|Ga0187801_10072377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1278	Open in IMG/M
3300017942\|Ga0187808_10074615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1457	Open in IMG/M
3300017973\|Ga0187780_11138827	Not Available	571	Open in IMG/M
3300017974\|Ga0187777_11110842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	575	Open in IMG/M
3300018035\|Ga0187875_10306426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	859	Open in IMG/M
3300018035\|Ga0187875_10420721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300018035\|Ga0187875_10599825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300020070\|Ga0206356_10144509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300020076\|Ga0206355_1144417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	721	Open in IMG/M
3300020078\|Ga0206352_10687209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	714	Open in IMG/M
3300020081\|Ga0206354_10383738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300020082\|Ga0206353_11475521	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300020580\|Ga0210403_10571246	Not Available	915	Open in IMG/M
3300020581\|Ga0210399_10871137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	732	Open in IMG/M
3300020583\|Ga0210401_10625953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	938	Open in IMG/M
3300021088\|Ga0210404_10398578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	769	Open in IMG/M
3300021168\|Ga0210406_10335688	Not Available	1222	Open in IMG/M
3300021180\|Ga0210396_11436805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300021404\|Ga0210389_10375430	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300021406\|Ga0210386_10469831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1087	Open in IMG/M
3300021433\|Ga0210391_10776281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300021444\|Ga0213878_10172908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	902	Open in IMG/M
3300021474\|Ga0210390_10265065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1455	Open in IMG/M
3300021560\|Ga0126371_12959925	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300022521\|Ga0224541_1004578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1478	Open in IMG/M
3300022530\|Ga0242658_1192616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300022531\|Ga0242660_1119801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	663	Open in IMG/M
3300022718\|Ga0242675_1017789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300022724\|Ga0242665_10156846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	723	Open in IMG/M
3300022873\|Ga0224550_1070843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300024176\|Ga0224565_1043208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	524	Open in IMG/M
3300025504\|Ga0208356_1006792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	2671	Open in IMG/M
3300025912\|Ga0207707_11090528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300025928\|Ga0207700_10851811	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300026310\|Ga0209239_1199814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	722	Open in IMG/M
3300027110\|Ga0208488_1068058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300027117\|Ga0209732_1091978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300027334\|Ga0209529_1018379	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300027648\|Ga0209420_1163528	Not Available	605	Open in IMG/M
3300027674\|Ga0209118_1061773	Not Available	1091	Open in IMG/M
3300027879\|Ga0209169_10291282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	857	Open in IMG/M
3300027882\|Ga0209590_10054375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2245	Open in IMG/M
3300027882\|Ga0209590_10768961	Not Available	613	Open in IMG/M
3300027884\|Ga0209275_10612363	Not Available	625	Open in IMG/M
3300027898\|Ga0209067_10957936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300027911\|Ga0209698_10125782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2120	Open in IMG/M
3300028381\|Ga0268264_10200034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1827	Open in IMG/M
3300028808\|Ga0302228_10222737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	855	Open in IMG/M
3300029943\|Ga0311340_10776331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	811	Open in IMG/M
3300029951\|Ga0311371_10797654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1164	Open in IMG/M
3300029999\|Ga0311339_11005802	Not Available	781	Open in IMG/M
3300030549\|Ga0210257_10860742	Not Available	528	Open in IMG/M
3300030580\|Ga0311355_11184937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	675	Open in IMG/M
3300030737\|Ga0302310_10586917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300030743\|Ga0265461_10630794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	940	Open in IMG/M
3300031199\|Ga0307495_10240065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300031640\|Ga0318555_10438569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	708	Open in IMG/M
3300031744\|Ga0306918_11231818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	577	Open in IMG/M
3300031747\|Ga0318502_10168785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1255	Open in IMG/M
3300031747\|Ga0318502_10579457	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300031748\|Ga0318492_10662663	Not Available	558	Open in IMG/M
3300031782\|Ga0318552_10604105	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031846\|Ga0318512_10028526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	2375	Open in IMG/M
3300031879\|Ga0306919_11245325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300031890\|Ga0306925_10470486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1341	Open in IMG/M
3300031912\|Ga0306921_10752450	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300031942\|Ga0310916_11350781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	585	Open in IMG/M
3300031947\|Ga0310909_11177091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	621	Open in IMG/M
3300031954\|Ga0306926_11590788	Not Available	750	Open in IMG/M
3300032008\|Ga0318562_10494013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	710	Open in IMG/M
3300032035\|Ga0310911_10350668	Not Available	852	Open in IMG/M
3300032042\|Ga0318545_10138019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300032042\|Ga0318545_10252098	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300032063\|Ga0318504_10263360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300032064\|Ga0318510_10113783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041	Open in IMG/M
3300032091\|Ga0318577_10067020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1638	Open in IMG/M
3300032160\|Ga0311301_12535849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300032174\|Ga0307470_11473164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300032895\|Ga0335074_10980265	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300032896\|Ga0335075_10086837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	4161	Open in IMG/M
3300032896\|Ga0335075_10105047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3681	Open in IMG/M
3300032896\|Ga0335075_10814622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	872	Open in IMG/M
3300033134\|Ga0335073_11745202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300033134\|Ga0335073_11804804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300033158\|Ga0335077_10490719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1301	Open in IMG/M
3300033289\|Ga0310914_11151507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	677	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.57%
Host-Associated	Host-Associated	11.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.43%
Plants	Host-Associated → Plants	11.43%
Aquatic	Environmental → Aquatic	7.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.00%
Peat	Environmental → Terrestrial → Peat	5.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.71%
Freshwater	Environmental → Aquatic → Freshwater	5.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.00%
Sediment	Environmental → Aquatic → Sediment	2.14%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.71%
Roots	Host-Associated → Plants → Roots	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Loam	Environmental → Terrestrial → Soil → Loam	17.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.14%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.71%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.71%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.43%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.86%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.14%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.71%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.29%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.29%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.14%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.14%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.14%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.14%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.14%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.43%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.43%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.43%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.71%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.71%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.71%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.71%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.71%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.71%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.71%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.71%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011078	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental	Open in IMG/M
3300024176	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030549	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054262

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE2_07612840	2189573003	Grass Soil	VLSRIAFSTLAFPDVPLAAAVSAGRRWGYSGVELRLIDGELIDP
JGIcombinedJ26739_1002084352	3300002245	Forest Soil	VSMQLRIAFSTLAFPDASLATAVSLGRQWGYGGVELRLIDG
JGIcombinedJ26739_1003141692	3300002245	Forest Soil	MNTLPIAFTTLAFPDATLAEATSLGRSWGYAGVELRLIDGQVF
Ga0062387_1006899992	3300004091	Bog Forest Soil	MNPSVRIAFSTLAFPDASLASAVSLGRRWGYAGVEFRLIDGEL
Ga0068966_13938312	3300004476	Peatlands Soil	MNPPVRIAFSTLAFPDASLASAVSLGRRWGYAGVELRLIDGELI
Ga0066388_1045072291	3300005332	Tropical Forest Soil	VPSRIAFSTLAFPDATLAAALSAGRRWGYSGVELRLIDGELIDPSWRSPR*
Ga0070709_114181022	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGE
Ga0070714_1009371161	3300005435	Agricultural Soil	VPSRIAFSTLAFPDVTLAAAVSAGRRWGYSGVELRLIDGELIDPELPA
Ga0070714_1023723771	3300005435	Agricultural Soil	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGELI
Ga0070713_1010880071	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VPEERGVPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRL
Ga0070711_1019861332	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VRAEGRSEPSRIAFSTLAFPDATLAAALSAGRRWGYSGVELRLIDGEL
Ga0070705_1003933421	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNALRIAFSTLAFPDASLEEAISLGRTWGYAGVELRLIDGQ
Ga0070678_1022127041	3300005456	Miscanthus Rhizosphere	VLSRIAFSTLAFPDATLAAAICAGRRWGYSGVELRLIDGELI
Ga0070665_1005284231	3300005548	Switchgrass Rhizosphere	VLSRIAFSTLAFPDATLAAAISAGRRWGYSGVELRLIDGEL
Ga0070665_1016797231	3300005548	Switchgrass Rhizosphere	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGELIDPAM
Ga0066670_108277081	3300005560	Soil	MPPRIAFSTLAFPDATLAAAVSLGRRWGYAGIELRL
Ga0068857_1016209831	3300005577	Corn Rhizosphere	MPPRIAFSTLAFPDATLAAAVSLGRRWGYAGIELRLIDGELIDP
Ga0066654_106505722	3300005587	Soil	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELR
Ga0070762_103678221	3300005602	Soil	MHMNALRIAFSTLAFPDATLAEATSLGRSWGYAGVELRLIDGQLIDS
Ga0070763_101983902	3300005610	Soil	VPSRIAFSTLAFPDATLAAALFAGRRWGYSGVELRLIDGELIDPAM
Ga0068856_1014543042	3300005614	Corn Rhizosphere	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDG
Ga0070764_104123331	3300005712	Soil	MQPPIAFSTLAFPDASLATAVSLGRKWGYGGVELRLIDGELI
Ga0066903_1072499932	3300005764	Tropical Forest Soil	MPPRIAFSTLAFPDATLAAAVSLGRRWGYAGIELRLIDGELID
Ga0070716_1014152883	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNPSRIAYSTLAFPDATLAEATTLGRSWGYAGVELR
Ga0075014_1010279122	3300006174	Watersheds	MHPPSRVAFSTLAFPDATLASAVSLGRRWGYAGVELRLIDGELIDP
Ga0097621_1020294841	3300006237	Miscanthus Rhizosphere	VPSRIAFSTLAFPDVTLAAAVSAGRRWGYSGVELRLIDGELID
Ga0074047_118778542	3300006576	Soil	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLVDGEL
Ga0074062_100039741	3300006606	Soil	VPSRIAFSTLAFPDATLAAAASAGRRWGYSGPSPS
Ga0079221_104637291	3300006804	Agricultural Soil	VLSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRL
Ga0075425_1018143571	3300006854	Populus Rhizosphere	MPPRIAFSTLAFPDATLAAAVSLGRRWGYAGIELRLIDGE
Ga0075424_1008186331	3300006904	Populus Rhizosphere	VRGRRKERPSRIAFSTLAFPDATLAAALSAGRRWGYSG
Ga0116216_102933242	3300009698	Peatlands Soil	MSVPARVAFSTLAFPDATLASATSLGRRWGYSGIELRLIDGELIDP
Ga0074046_107054161	3300010339	Bog Forest Soil	MSAPPRIAFSTLAFPNAILASAASLGCRWGYSGIELRL
Ga0126372_123650182	3300010360	Tropical Forest Soil	MSVPPRIAFSTLAFPDAALAAAVGAGRRWGYAGVELRLIDGELIDP
Ga0134125_114802661	3300010371	Terrestrial Soil	VRSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRL
Ga0134128_116531231	3300010373	Terrestrial Soil	MNALRIAFSTLAFPDASLEEAISLGRTWGYAGVELRLI
Ga0105239_109266871	3300010375	Corn Rhizosphere	VPSRIAFSTLAFPDATLAAAISAGRRWGYSGVELRL
Ga0126381_1008058311	3300010376	Tropical Forest Soil	MNEMRFAFSTLAFPGAALATTVSLGRSWGYAGVELRLVDGQ
Ga0136449_1011794971	3300010379	Peatlands Soil	MDMNTLRIAFSTLAFPDATLAEAITLGRSWGYAGVELRLIDGQ
Ga0134126_108483211	3300010396	Terrestrial Soil	MPPRIAFSTLAFPDATLAAAVSLGRRWGYAGIELRLIDG
Ga0126383_114646151	3300010398	Tropical Forest Soil	MSAPRIAFSTLAFPKASLATAVRLGREWGYAGVELRLIDGALI
Ga0126350_113502331	3300010880	Boreal Forest Soil	MLPMSAPPRIAFSTLAFPGATLAEAASLGRRWGYAGIEL
Ga0138565_10271632	3300011078	Peatlands Soil	MNPPVRIAFSTLAFPDASLASAVSLGRRWGYAGVELRLIDGELID
Ga0150983_117135102	3300011120	Forest Soil	MSVPPRIAFSTLAFPQATLAAAASLGRRWGYSGIELRLIDG
Ga0150984_1005467021	3300012469	Avena Fatua Rhizosphere	VPSRIAFSTLAFPDTTLAAAVSAGRRWGYSGVELRLIDG
Ga0157346_10050051	3300012480	Arabidopsis Rhizosphere	VLSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELR
Ga0157335_10314011	3300012492	Arabidopsis Rhizosphere	VLSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGELIDPAA
Ga0157350_10035841	3300012499	Unplanted Soil	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGELID
Ga0157342_10105342	3300012507	Arabidopsis Rhizosphere	VLSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGELIDPAAYPH
Ga0164299_109036381	3300012958	Soil	MNALRIAFSTLAFPEATLEEAVTLGHACGYAGVELRLIDGQMID
Ga0157370_106913171	3300013104	Corn Rhizosphere	VRAEGRSEPSRIAFSTLAFPDATLAAAASAGRRWGYSGIELRLIDGELID
Ga0157375_114204882	3300013308	Miscanthus Rhizosphere	VSSRIAFSTLAFPDATLAAAISAGRRWGYSGVELRLIDGELI
Ga0187802_103285162	3300017822	Freshwater Sediment	MSVAPRIAFSTLAFPDATLVAAAAAGRRWGYAGIEL
Ga0187801_100723772	3300017933	Freshwater Sediment	VPVVSAEADRSPGLLSRFAFSTLAFPGTTLAAAASLGRRWGYTGVELRLIDGE
Ga0187808_100746151	3300017942	Freshwater Sediment	MMHPPPRVAFSTLAFPDATLASAVSLGRRWGYAGVELRLI
Ga0187783_114197562	3300017970	Tropical Peatland	VSVVSLDADRSPGVLPRFAFSTLAFPDTTLAAAVSLGRRWGYTGVELRLIDGEL
Ga0187780_111388271	3300017973	Tropical Peatland	MSVPARIAFSTLAFPGATLAAAAAAGRRWGYSGIELR
Ga0187777_111108421	3300017974	Tropical Peatland	MTHRPPRVVFSTLALPDATLASAVSLGRRWGYAGVELRLIDGELADRMEVTP
Ga0187875_103064262	3300018035	Peatland	MPVNAMPLAFSTLAFPDTPLATAASLGRSWGYSGIELRLIDGELI
Ga0187875_104207212	3300018035	Peatland	MSAPSRIAFSTLAFPDATLASAASLGRRWGYAGIELRLID
Ga0187875_105998252	3300018035	Peatland	MPPRIAFSTLAFPAATLAAAVSLGRRWGYAGIELR
Ga0206356_101445091	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MPSRIAFSTLAFPDATLAAAVSLGRRWGYADVKRDK
Ga0206355_11444171	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGE
Ga0206352_106872091	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	VPSRIAFSTLAFPDATLAAAISAGRRWGYSGVELRLID
Ga0206354_103837381	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	VRAEGRSEPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLI
Ga0206353_114755212	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGELIDP
Ga0210403_105712462	3300020580	Soil	MKALRIAFSTLAFPDATLAEATALGRSWGYAGVELRLIDGQLI
Ga0210399_108711372	3300020581	Soil	MHPPSRVSFSTLAFPDATLASAVSLGRRWGYAGVELRLI
Ga0210401_106259531	3300020583	Soil	VPSRIAFSTLAFPDATLAAAASAGRRWGYSGIELRLIDGEVIDPA
Ga0210404_103985781	3300021088	Soil	MSPASAERRSVPSRIAFSTLAFPDATLAAAASAGRRWGYSGIELRLIDGE
Ga0210406_103356881	3300021168	Soil	MKALRIAFSTLAFPDATLAEATALGRSWGYAGVELRLI
Ga0210396_114368051	3300021180	Soil	MLASAPRIAFSTLAFPDATLATAVSLGRSWGYAGVE
Ga0210389_103754301	3300021404	Soil	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGELIDPA
Ga0210386_104698311	3300021406	Soil	MTGSSRLAFSTLAFPGTTLARAVALGREYGYQGIELR
Ga0210391_107762811	3300021433	Soil	MTRSPRIAFSTLAFPGTTLARAASLGRRYGYQGIEL
Ga0213878_101729084	3300021444	Bulk Soil	MKPLRIAFSTLAFPEATLAEATALGRSWGYAGVELRL
Ga0210390_102650651	3300021474	Soil	VTAPRLAFSTLAFPAATLATALSLGRSWGYSGVELRLIDGELIDPSM
Ga0126371_129599252	3300021560	Tropical Forest Soil	MNEMRFAFSTLAFPGATLATAVTLGRSWGYAGVELLLVDGQLIDSSMSA
Ga0224541_10045781	3300022521	Soil	MIRSADPLSRVAFSTLAFPDATLASAVSLGRRWGYRGVELRLIDGELIDP
Ga0242658_11926161	3300022530	Soil	MPPRIAFSTLAFPDATLASAASLGRGWGYSGIELRLIDGELIDPSM
Ga0242660_11198012	3300022531	Soil	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLI
Ga0242675_10177891	3300022718	Soil	MSPASAERRSVPSRIAFSTLAFPDATLAAAASAGRRWGYSGIELRLIDGEL
Ga0242665_101568461	3300022724	Soil	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLID
Ga0224550_10708431	3300022873	Soil	MIRSADPLSRVAFSTLAFPDATLASAVSLGRRWGYRGVELRLIDGEL
Ga0224565_10432081	3300024176	Plant Litter	VSAGPPIAFSTLAFPGASVATALSLGGAWGYGGVELRLIDGELI
Ga0208356_10067923	3300025504	Arctic Peat Soil	MSARRIAFSTLAFPDTPLARAVALGSSWGYTGVELRLIDG
Ga0207707_110905281	3300025912	Corn Rhizosphere	MPSRIAFSTLAFPDATLAAAVSLGRRWGYAGIELRLID
Ga0207700_108518111	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MNALRIAFSTLAFPDASLEEAISLGRTWGYAGVELRLIDGQLIDSSM
Ga0209239_11998141	3300026310	Grasslands Soil	VSSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGELID
Ga0208488_10680581	3300027110	Forest Soil	MSGPSRIAFSTLAFPDATLASAASLGRRWGYAGIELRLIDGELIDPS
Ga0209732_10919781	3300027117	Forest Soil	MTARHIAFSTLAFPDTTLARAVALGRSWGYTGVELRLI
Ga0209529_10183792	3300027334	Forest Soil	VSMQPRIAFSTLAFPDASLATAVSLGRKWGYDGVELRLIDG
Ga0209420_11635282	3300027648	Forest Soil	MSAPPRIAFSTLAFPDATLASAASYGRRWGYAGIEL
Ga0209118_10617732	3300027674	Forest Soil	MPVKALPTAFSTLAFPDATLAEATSLGRSWGYAGVEL
Ga0209169_102912821	3300027879	Soil	MTRSPRIAFSTLAFPGTTLARAASLGRQYGYQGIELRLI
Ga0209590_100543751	3300027882	Vadose Zone Soil	MSVPPRIAFSTLAFPDATLAAAAALGRRWGYSGIELR
Ga0209590_107689612	3300027882	Vadose Zone Soil	MSVPPRIAFSTLAFPDATLAAAAAAGRRWGYSGIELRLV
Ga0209275_106123631	3300027884	Soil	MNALRIAFSTLAFPDATLAEATSLGRSWGYAGVELRLI
Ga0209067_109579362	3300027898	Watersheds	MSMPPRIAFSTLAFPDATLAAAAAAGRRWGYSGIELRLIDG
Ga0209698_101257821	3300027911	Watersheds	MHPPSRVCFSTLAFPDATLASAVSLGRRWGYAGVELRLIDGELIDPSM
Ga0268264_102000341	3300028381	Switchgrass Rhizosphere	VPSRIAFSTLAFPDATLAAAVSAGRRWGYSGVELRLIDGEL
Ga0302228_102227372	3300028808	Palsa	MSASSRIAFSTLAFPDATLASAASLGRRWGYGGIELRLIDGELIDP
Ga0311340_107763311	3300029943	Palsa	MSGPSRIAFSTLAFPDATLASAASLGRRWGYAGIELRLIDGEL
Ga0311371_107976541	3300029951	Palsa	MTGSSRLAFSTLAFPGTTLARAASLGREYGYQGIELRLI
Ga0311339_110058021	3300029999	Palsa	MAFMRVRLPPVNASRIAFSTLAFPDATLAEATSLGRSWGYSGVELRLIDGQ
Ga0210257_108607421	3300030549	Soil	MSGPSRIAFSTLAFPDATLASAASLGRRWGYAGIELRLID
Ga0311355_111849371	3300030580	Palsa	MTGSSRLAFSTLAFPGTTLARAASLGREYGYQGIELRLID
Ga0302310_105869171	3300030737	Palsa	MSASSRIAFSTLAFPDATLASAASLGRRWGYGGIELRL
Ga0265461_106307942	3300030743	Soil	MSALSRIAFSTLAFPDATLAAAASLGRRWGYGGIELRLKK
Ga0307495_102400651	3300031199	Soil	MPPRIAFSTLAFPDATLAAAVSHGRRWGYAGIELRLI
Ga0318555_104385692	3300031640	Soil	MTQPPPRVAFSTLAFPDATLASAVSLGRRWGYAGVEL
Ga0306918_112318182	3300031744	Soil	VPSRIAFSTLAFPDATLAAATSAGRRWGYSGIELRLIDV
Ga0318502_101687852	3300031747	Soil	AVPDATLAAAASAGRRWGYSGIELRLIDGELIDPSFRRPR
Ga0318502_105794572	3300031747	Soil	MSPPRIAFSTLAFPYASLATAISLGRSWGYAGVELRLIDGELID
Ga0318492_106626632	3300031748	Soil	MTQPPPRVAFSTLAFPDATLASAVSLGRRWGYAGVE
Ga0318552_106041051	3300031782	Soil	MRIAFSTLAFPNQPLAEVISLGRSWGYSGVELRVIDGHMVESSM
Ga0318512_100285261	3300031846	Soil	VPSRIAFSTLAYPDATLAAAASAGRRWGYSGIELRLIDGELIDPAM
Ga0306919_112453251	3300031879	Soil	VPSRIAFSTLAFPDATLAAATSAGRRWGYSGIELRL
Ga0306925_104704862	3300031890	Soil	VPSRIAFSTLAFPDATLAAATSAGRRWGYSGIELRLIDVGLLTAGGY
Ga0306921_107524503	3300031912	Soil	MHVAPLRIAFSTLAFPDATLAEATALGRSWGYAGVELRLIDGQLIDSS
Ga0310916_113507812	3300031942	Soil	MILSADPPPRVAFSTLAFPDATLARAVSLGRRWGYAGVELRL
Ga0310909_111770912	3300031947	Soil	MTQPPPRVAFSTLAFPDATLASAVSLGRRWGYAGVELRLIDGELI
Ga0306926_115907882	3300031954	Soil	MSPPLIAFSTLAFPDASLAAAVSLGREWGYAGVEL
Ga0318562_104940131	3300032008	Soil	RIAFSTLAFPDATLAAAASAGRRWGYSGIELRLIDGELIDPSFRRPR
Ga0310911_103506682	3300032035	Soil	MHVAPLRIAFSTLAFPDATLAEATALGRSWRYAGV
Ga0318545_101380191	3300032042	Soil	MILSADPPPRVAFSTLAFPDATLARAVSLGRRWGYAGVELRLIDG
Ga0318545_102520981	3300032042	Soil	MQIAFSTLAFPNQPLAEVISLGRSWGYSGVELRVIDGHMVESSMPA
Ga0318504_102633601	3300032063	Soil	VPSRIAFSTLAFPDATLAAAASAGRRWGYSGIELRLIDGEL
Ga0318510_101137831	3300032064	Soil	VAFSTLAFPDATLASAVSLGRRWGYAGVELRLIDGELIDPSMP
Ga0318577_100670202	3300032091	Soil	MTQPPPRVAFSTLAFPDATLASAVSLGRRWGYAGVELRLIDG
Ga0311301_125358491	3300032160	Peatlands Soil	MDMNTLRIAFSTLAFPDATLAEAITLGRSWGYAGVELRLIDG
Ga0307470_114731642	3300032174	Hardwood Forest Soil	VPSRIAFSTLAFPDATLAAALFAGRRWGYSGVELRLIDG
Ga0335074_109802652	3300032895	Soil	VSMQPRIAFSTLAFPDASLATAVSLGRKWGYGGVELRLIDGELIDPSMP
Ga0335075_100868371	3300032896	Soil	MSRPRIAFSTLAFPDATLARAVSLGRSWGYEGVELRL
Ga0335075_101050471	3300032896	Soil	MPQEAPITTARIAFSTLAFPDADLATAVSLGRSWGYAGVELRLIDGELID
Ga0335075_108146221	3300032896	Soil	MSQPPPRVAFSTLAFPDATLASAVSLGRRWGYAGVELRLID
Ga0335073_117452023	3300033134	Soil	MSAARIAFSTLAFPGASLATAISLGRSWGYAGVELRLIDGELI
Ga0335073_118048041	3300033134	Soil	MTQPPPRVAFSTLAFPGATLASVVSLGRRWGYGGVELRLID
Ga0335077_104907191	3300033158	Soil	FPDATLAAAASAGRRWGYSGIELRLIDGEPIDPSCRSPR
Ga0310914_111515072	3300033289	Soil	IAFSTLAFPDATLAAAASAGRRWGYSGIELRLIDGELIDPSFRRPR

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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